Citrus Sinensis ID: 012683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK
Secondary Structure (PSIPRED)
ccccccccHHHccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccEEcccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELkldvdtqdedgetpllHAARQGHTETAKYLfehganptipsnlgatalhhsaGIGNIELLTYLLSkgaevdsesdagtpliwaaGHGQQEAVKVLLEhhanpnaetedniTPLLSAVAAGSLTCLDLLIQAGANanivaggatplhiaadIGSTEIIKCLLkagadpnvtdedgqkPIQVAAARGNREAVEILFpltsedpsipkwtVDGILEYmqsesgkqlEETRnlkennapkdkapmkelpevrPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTqaidfdpsdatllsnRSLCWIRLGQAEHALADAKACRalrpdwpkacYREGAALRLLEKFDEAANAFYegvtldpenKELVFAFREAVEAGRKFHGTDKK
Flexible Loop (DISEMBL)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAlhfaaregktDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGadpnvtdedgQKPIQVAAARGNREAVEIlfpltsedpsipKWTVDGILEYMQSESGKQleetrnlkennapkdkapmkelpevrpEIKKKAAeakargdeafkqKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVeagrkfhgtdkk
Low Complexity Region (SEG)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQagananivaggaTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIkkkaaeakaRGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK
Disordered region (IsUnstruct)
*********AVRERVQQFLNAACTGNLDLLKKIAKQLD********TVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVD******************TETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV*****AGTPLIWAAGHGQQEAVKVLLEHHA******EDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA********************NREAVEILFPLTSEDPSIPKWTVDGILEY******************************************************KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE***********
Disordered Region (DISOPRED)
****ASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG*********
Disordered Region (DISEMBL)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIK**********DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG*********
Disordered Region (DISPRO)
*****SHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.530	0.129	0.368	8e-31
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.530	0.130	0.360	2e-29
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.510	0.237	0.330	6e-26
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.524	0.203	0.314	8e-26
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.515	0.120	0.340	1e-24
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.515	0.053	0.336	4e-24
Q7T163	1672	Kinase D-interacting subs	no	no	0.489	0.133	0.337	6e-24
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.486	0.056	0.340	1e-23
Q08DV6	525	Ankyrin repeat and SOCS b	no	no	0.528	0.460	0.348	2e-23
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.486	0.057	0.340	3e-23

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 138/255 (54%), Gaps = 12/255 (4%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct: 411 ASFMGHLPIVKNLLQ------RGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQN-K 460

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
             V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct: 461 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 520

Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct: 521 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 580

Query: 200 SLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 581 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 640

Query: 259 VAAARGNREAVEILF 273
           +AA  G+ E V +L 
Sbjct: 641 LAAQEGHAEMVALLL 655

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 135/255 (52%), Gaps = 12/255 (4%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+   
Sbjct: 407 ASFMGHLPIVKNLLQ------RGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQNKA 457

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
                  +D +TPL  AAR GHT   K L E+GA+P + +  G T LH +A  G+++   
Sbjct: 458 KANAKAKDD-QTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTAL 516

Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLEH A+PNA  ++ +TPL  AV   
Sbjct: 517 ALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAVHHN 576

Query: 200 SLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 577 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLH 636

Query: 259 VAAARGNREAVEILF 273
           +AA  G+ E V +L 
Sbjct: 637 LAAQEGHTEMVALLL 651

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score =  119 bits (297), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

Query: 46  KTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTET 105
           K  A+IKD+     L +A+  G  +  K L+E+  +DV+T+D+   TPL  A+     E 
Sbjct: 92  KANANIKDSAGNTPLQWASSRGHLECIKLLVEKGGVDVNTKDDKNGTPLHKASLFASAEC 151

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAG 164
             YL    A+P   +  G T LHH++  GN + +  L+   ++V++ ++D  TPL  A+ 
Sbjct: 152 VLYLLNGKADPRAVTTNGETPLHHASAGGNPQCVELLIKADSKVNAVDNDCITPLHQASF 211

Query: 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP 223
            G    V +LL+  A  +      I+PL +A +AG + C++ L++ G N N V   G TP
Sbjct: 212 SGHSSCVSLLLKKGAKVDPRDIHGISPLHNAASAGYVDCVEQLVRNGENINCVDIEGVTP 271

Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSI 282
           LH     G+ ++ K L++ GA  N+ DE G+ P+  AA  G++E  E L  L   DP++
Sbjct: 272 LHHTCFNGNLQLTKRLIELGAKINMVDEMGETPLHKAAFNGHKEVCEYLLYL---DPTM 327

Dictyostelium discoideum (taxid: 44689)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  118 bits (296), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 138/254 (54%), Gaps = 14/254 (5%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           AA  GNLDL K +AK   D          + K  N    LH+A + G   + K+L+E  +
Sbjct: 645 AAKNGNLDLAKLLAKNGAD---------VNAKTDNGETVLHYAVKSGNLHLVKWLIEN-Q 694

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
            ++  + ++GET L +A    +++    L  +GA+    ++ G TALH++   GN++L++
Sbjct: 695 ANIHAKTDNGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNLDLVS 754

Query: 141 YLLSKGAEVDSESDAGTPLIWAA-GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            L+S GA+V++++++G  ++++A  +G  + V +L+ + A+ NA+T++  T L  AV +G
Sbjct: 755 LLISHGADVNAKTNSGETILYSAVDYGSPDLVYLLIAYGADVNAKTDNGETVLHYAVESG 814

Query: 200 SLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
           +L  + LLI  GAN N      T LH AA  G+  ++  L+K  AD +     G+  +  
Sbjct: 815 NLDLVSLLIHNGANVN---NAKTILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHF 871

Query: 260 AAARGNREAVEILF 273
           AA  GN   V  L 
Sbjct: 872 AAESGNLNLVNWLI 885

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 32  KIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91
           K+AK L D+     K   + K  N    LH A ++ +  V + LL+     +    E G 
Sbjct: 364 KVAKVLLDK-----KASPNAKALNGFTPLHIACKKNRIRVMELLLKH-GASIQAVTESGL 417

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TP+  AA  GH      L  HGA+P   +  G TALH +A  G  E++ YL+  GA+V++
Sbjct: 418 TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEA 477

Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           ++ D  TPL  +A  G+ + V+ LL+  A+PNA T    TPL  A   G       L+  
Sbjct: 478 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDH 537

Query: 211 GANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
           GA+ +I    G TPLH+AA  G  E+   LL+  A P+   + G  P+ VAA   N++  
Sbjct: 538 GASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 597

Query: 270 EILF 273
            +L 
Sbjct: 598 LLLL 601

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  113 bits (282), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 8/244 (3%)

Query: 32  KIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91
           K+AK L D+     K   + K  N    LH A ++ +  V + LL+     +    E G 
Sbjct: 381 KVAKVLLDK-----KANPNAKALNGFTPLHIACKKNRIKVMELLLKH-GASIQAVTESGL 434

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TP+  AA  GH      L  HGA+P   +  G TALH +A  G  E++ YL+  GA+V++
Sbjct: 435 TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEA 494

Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           ++ D  TPL  +A  G+ + V+ LL+  A+PNA T    TPL  +   G       L+  
Sbjct: 495 KAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDH 554

Query: 211 GANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
           GA+ +I    G TPLH+AA  G  E+   LL+  A P+   + G  P+ VAA   N++  
Sbjct: 555 GASLSITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVA 614

Query: 270 EILF 273
            +L 
Sbjct: 615 LLLL 618

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 4/228 (1%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
            D +  N +  L  A+ +G  ++ + L+     +V+  D D  + L+ AA++GH E  K 
Sbjct: 31  VDGRSDNGQTPLMLASEQGSLEIVQELIRR-GANVNLDDVDCWSALISAAKEGHVEVVKE 89

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHG 166
           L E+ A        G TAL  ++  G +E+ T LL  GA  ++  +  +  P+IWAAG G
Sbjct: 90  LLENSAYIEHRDMGGWTALTWASYKGRVEVATVLLENGANPNTTGQQYSVYPIIWAAGRG 149

Query: 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH 225
             E VK+LLEH A  N   +   TPL+ A   G   C+  L++ GA+ +   A   T L 
Sbjct: 150 HAEIVKLLLEHGAKVNCSDKYGTTPLIWAARKGHYDCVMHLLENGADVDQEGANSMTALI 209

Query: 226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           +A   G TE++K LLK   + N+TD+DG   + +AA  G  E V+ L 
Sbjct: 210 VAVKGGYTEVVKELLKRNPNVNMTDKDGNTALMIAAKEGYTEIVQDLL 257

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 3/226 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+ +     ALH AAR G+ +V + LL    L VD +  + +TPL  A+R G TE  + L
Sbjct: 458 DVTNIRGETALHMAARAGQVEVVRCLLRNGAL-VDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            +H A+P   +  G T LH SA  G +++ + LL  GA     +  G TPL  AA +G  
Sbjct: 517 LQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSL 576

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIA 227
           +  K+LL+  A  ++  ++ +TPL  A    +     LL++ GA+ +  A  G TPLHIA
Sbjct: 577 DVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIA 636

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A     +I   LL  GA+ N+  + G  P+ +A+  G+ + V +L 
Sbjct: 637 AKKNQMQIASTLLNYGAETNIVTKQGVTPLHLASQEGHTDMVTLLL 682

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q08DV6|ASB3_BOVIN Ankyrin repeat and SOCS box protein 3 OS=Bos taurus GN=ASB3 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 138/270 (51%), Gaps = 28/270 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL--HFAAREGKTDVCKYLL-- 76
           AA  GN+ +L+K+ K      KG S  VAD      RG +  H A+     +  + L+  
Sbjct: 17  AAREGNVKVLRKLLK------KGRSIDVAD-----NRGWMPIHEASYHNSVECLRMLIRA 65

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           +  +  + T+  +G   L  AA QGH +  + L E GA+P   +    T L  +   G I
Sbjct: 66  DSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQI 125

Query: 137 ELLTYLLSKGAEVD-SESDAGTPLIWAAGH-----GQQEAVKVLLEHHANPNAETEDNIT 190
           ++L  LL  GA V+ S S  G    W A H     G  E +K+LL+  AN   + +  IT
Sbjct: 126 DVLRLLLRYGANVNGSHSMCG----WNALHQASFQGNAEIIKLLLKKGANKECQDDFGIT 181

Query: 191 PLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNV- 248
           PL  A   G L  L +LI +GA+ N  A   ATPL IAA  G TE ++ LL +GADP++ 
Sbjct: 182 PLFVAAQYGKLESLSILISSGADVNCQALDKATPLFIAAQEGHTECVELLLSSGADPDLY 241

Query: 249 -TDEDGQKPIQVAAARGNREAVEILFPLTS 277
             +++ Q PI  AA  G+ + +++L PLT+
Sbjct: 242 CNEDNWQLPIHAAAQMGHTKILDLLIPLTN 271

Probable substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes TNFRSF1B.

Bos taurus (taxid: 9913)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+ +     ALH AAR G+ +V + LL    L VD +  + +TPL  A+R G TE  + L
Sbjct: 458 DVTNIRGETALHMAARAGQVEVVRCLLRNGAL-VDARAREEQTPLHIASRLGKTEIVQLL 516

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            +H A+P   +  G T LH SA  G +++ + LL  GA     +  G TPL  AA +G  
Sbjct: 517 LQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSL 576

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIA 227
           +  K+LL+  A  ++  ++ +TPL  A    +     LL++ GA+ +  A  G TPLHIA
Sbjct: 577 DVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIA 636

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A     +I   LL  GA+ N   + G  P+ +A+  G+ + V +L 
Sbjct: 637 AKKNQMQIASTLLNYGAETNTVTKQGVTPLHLASQEGHTDMVTLLL 682

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
225453006	458	PREDICTED: ankyrin-1 [Vitis vinifera] gi	0.995	0.995	0.812	0.0
255580917	463	ankyrin repeat-containing protein, putat	0.995	0.984	0.783	0.0
449483017	458	PREDICTED: ankyrin-1-like [Cucumis sativ	0.995	0.995	0.781	0.0
356504107	678	PREDICTED: uncharacterized protein LOC10	0.991	0.669	0.763	0.0
363807266	460	uncharacterized protein LOC100793914 [Gl	0.991	0.986	0.771	0.0
224125660	451	predicted protein [Populus trichocarpa]	0.958	0.973	0.742	0.0
449442947	454	PREDICTED: LOW QUALITY PROTEIN: ankyrin-	0.986	0.995	0.772	0.0
224130626	474	predicted protein [Populus trichocarpa]	0.993	0.959	0.720	0.0
147788021	433	hypothetical protein VITISV_032631 [Viti	0.941	0.995	0.753	0.0
334185083	680	ankyrin repeat family protein [Arabidops	0.978	0.658	0.715	0.0

>gi|225453006|ref|XP_002263664.1| PREDICTED: ankyrin-1 [Vitis vinifera] gi|296087918|emb|CBI35201.3| unnamed protein product [Vitis vinifera]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/458 (81%), Positives = 409/458 (89%), Gaps = 2/458 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDA  ALA R +VQQFLNAACTGNLDL KK+A QLDD GKGL+ TVAD+KDANKRGAL
Sbjct: 1   MAPDAYAALATRNKVQQFLNAACTGNLDLFKKLAAQLDD-GKGLAGTVADVKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T+VCKYLLEELKLDVD +DEDGETPLLHAARQGHT TAKYL +H A+P IPS
Sbjct: 60  HFAAREGRTEVCKYLLEELKLDVDAKDEDGETPLLHAARQGHTVTAKYLLDHSADPAIPS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIG+IELL +LLSKG ++DS+SDAGTPLIWAAGHGQ +AVKVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGDIELLRFLLSKGVDIDSQSDAGTPLIWAAGHGQHDAVKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+DNITPLLSAVAAGSL CL+LLIQAGA  NI+AGGATPLHIAADIGS EII CLL
Sbjct: 180 PNAETDDNITPLLSAVAAGSLACLELLIQAGARVNIIAGGATPLHIAADIGSPEIINCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPNVTDEDGQK IQVAAARGNR  VEILFPLTS   S+P+WT+DGI+E+MQSE GK
Sbjct: 240 KAGADPNVTDEDGQKAIQVAAARGNRGVVEILFPLTSPIQSVPEWTIDGIIEHMQSEMGK 299

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA 360
           Q +ETRN+KE N  +     +++P+V PE KKKAAEAK+RGD+AFK KDY MAVDAYTQA
Sbjct: 300 QQDETRNVKEANV-ETTLSKQDIPQVSPEAKKKAAEAKSRGDDAFKAKDYYMAVDAYTQA 358

Query: 361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420
           ID DP+DATLLSNRSLCWIRLGQAEHAL DAKACRALRPDW KACYREGAALRLL KFDE
Sbjct: 359 IDVDPTDATLLSNRSLCWIRLGQAEHALDDAKACRALRPDWSKACYREGAALRLLLKFDE 418

Query: 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           AAN+FYEGV LDPENKELV AFREAVEAGRKFH  D++
Sbjct: 419 AANSFYEGVKLDPENKELVNAFREAVEAGRKFHARDQE 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580917|ref|XP_002531277.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223529110|gb|EEF31090.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/462 (78%), Positives = 403/462 (87%), Gaps = 6/462 (1%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALAVR++VQ FL AACTGNLDLLK IA QLDD GKG++KTVADIKDANKRGAL
Sbjct: 1   MAPDASDALAVRQKVQNFLTAACTGNLDLLKNIAAQLDD-GKGMAKTVADIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREGKT+VCKYLLE+LKLDVDT+D+DGETPL+HAARQGHT TA YL EHGANP + S
Sbjct: 60  HFAAREGKTEVCKYLLEDLKLDVDTKDDDGETPLIHAARQGHTATAMYLLEHGANPAVAS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGNIELL YLLSKG EVDS+SDAGTPLIWAAGH Q +A+KVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGNIELLRYLLSKGVEVDSQSDAGTPLIWAAGHAQPDALKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAETEDNITPLLSAVAAGS+ CL+ L+QAGAN NI AGGATPLHIAAD GS+EI+ CLL
Sbjct: 180 PNAETEDNITPLLSAVAAGSVACLESLVQAGANVNITAGGATPLHIAADNGSSEILHCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAG DPNV DEDGQKPIQVAAARGNR AVEILFPLTS+   I +WTVDGIL +M +E  K
Sbjct: 240 KAGTDPNVIDEDGQKPIQVAAARGNRAAVEILFPLTSKVDDIAEWTVDGILGHMHTEFDK 299

Query: 301 QLEETRNLK----ENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDA 356
           QL   R+LK    + +      P K++ EV PE K++AAEAKARGD+AFK+KDY MAVDA
Sbjct: 300 QL-VLRSLKFAFCKFSLKGTTVPKKDISEVSPEAKRRAAEAKARGDDAFKRKDYRMAVDA 358

Query: 357 YTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE 416
           YTQAID DP+DA LLSNRSLCWIRLGQ EHALADAK CR+LRPDW KACYREGAALRLL+
Sbjct: 359 YTQAIDLDPTDAILLSNRSLCWIRLGQPEHALADAKTCRSLRPDWTKACYREGAALRLLQ 418

Query: 417 KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           +FDEAAN+FYEGV LDPENKELV AFREAV+ G+KFHGTD++
Sbjct: 419 RFDEAANSFYEGVKLDPENKELVAAFREAVDTGKKFHGTDQE 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483017|ref|XP_004156471.1| PREDICTED: ankyrin-1-like [Cucumis sativus]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/458 (78%), Positives = 395/458 (86%), Gaps = 2/458 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA RE VQQFLNAA  GN+DLLK +A +LDD GKGLS TVADIKDANKRGAL
Sbjct: 1   MAPDASDALAARETVQQFLNAARIGNIDLLKNLAARLDD-GKGLSGTVADIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREGKT+VC++L+EELKLDVDT+DEDGETPL+HAARQGHT+TAKYL E GANP I S
Sbjct: 60  HFAAREGKTEVCRFLIEELKLDVDTRDEDGETPLIHAARQGHTDTAKYLVERGANPAIAS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGNIELL +LLS+G +V+S+SDAGTPLIWAAGH QQEAVK+LLEHHAN
Sbjct: 120 DLGATALHHSAGIGNIELLNFLLSRGPDVNSQSDAGTPLIWAAGHAQQEAVKLLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D+ITPLLSAVAAGSL CLDLLIQAGA  NI AGGATPLHIAAD G+ EII  LL
Sbjct: 180 PNAETDDDITPLLSAVAAGSLACLDLLIQAGAKVNISAGGATPLHIAADSGNLEIINSLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           +AGADPN TDEDG KPIQVAAARG+R  VEIL PLTS    I  WT DGILEYMQ+E  K
Sbjct: 240 QAGADPNATDEDGLKPIQVAAARGSRAGVEILLPLTSAVKEISNWTTDGILEYMQNEINK 299

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA 360
               +RN  E+N  KD    ++LPEV PE KKKAAEAK+RGD+AF  KD+  AVDAYTQA
Sbjct: 300 DQAVSRN-PEDNKHKDSTAREDLPEVSPEAKKKAAEAKSRGDDAFNTKDFHTAVDAYTQA 358

Query: 361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420
           ID DP+D TLLSNRSLCWIRLGQAEHALADAKACRAL+PDWPKACYREGAALRLL++F+E
Sbjct: 359 IDLDPTDGTLLSNRSLCWIRLGQAEHALADAKACRALKPDWPKACYREGAALRLLQRFEE 418

Query: 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           AAN+FYEGV LDP N  LV AFREAVEAGRKFHGTDK+
Sbjct: 419 AANSFYEGVQLDPNNMALVNAFREAVEAGRKFHGTDKQ 456

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504107|ref|XP_003520840.1| PREDICTED: uncharacterized protein LOC100798118 [Glycine max]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/456 (76%), Positives = 393/456 (86%), Gaps = 2/456 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA R++VQ FLNAA TG++DLLKK+A QLD +GK L+K+V  IKDANKRGAL
Sbjct: 219 MAPDASDALAARQKVQLFLNAARTGSIDLLKKLALQLD-EGKDLAKSVEAIKDANKRGAL 277

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T VC YLL +LKL VD+QD+DGET L+HA RQGHT TAKYL +HGA+PT+ S
Sbjct: 278 HFAAREGQTAVCDYLLTDLKLSVDSQDDDGETALIHATRQGHTATAKYLIDHGADPTVAS 337

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           NLGAT LHHSAGIG+ ELL YLLS+G   D ESD+GTPL+WAAGH Q  +V VLLEH AN
Sbjct: 338 NLGATVLHHSAGIGDTELLKYLLSRGVNPDLESDSGTPLVWAAGHAQPASVSVLLEHGAN 397

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D ITPLLSAVAA SL CL+LLIQAGA  NI AGGATPLHIAAD GS E++ CLL
Sbjct: 398 PNAETDDGITPLLSAVAASSLACLELLIQAGAKVNISAGGATPLHIAADNGSLELLNCLL 457

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPNV+DEDG KPIQV AARG  +AVEILFPLTS+  +IP WTVDGILEYMQSE+ K
Sbjct: 458 KAGADPNVSDEDGVKPIQVGAARGYLKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRK 517

Query: 301 QLEETRNLKENNAPKD-KAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           QL+E+ N KE N PK+   P + +PEV PE KK+AAE+K+RGDEAFK+ DY MA+D+YTQ
Sbjct: 518 QLDESINDKETNQPKEADFPKQNVPEVAPEAKKRAAESKSRGDEAFKRNDYHMAIDSYTQ 577

Query: 360 AIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419
           AID +P+DATLLSNRSLCWI+LGQAEHALADAKACRALRPDWPKACYREGAALRLL+KFD
Sbjct: 578 AIDLNPTDATLLSNRSLCWIKLGQAEHALADAKACRALRPDWPKACYREGAALRLLQKFD 637

Query: 420 EAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455
           EAANAFYEGV LDPENKELV AFREAVEAGRKFHGT
Sbjct: 638 EAANAFYEGVKLDPENKELVNAFREAVEAGRKFHGT 673

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807266|ref|NP_001242105.1| uncharacterized protein LOC100793914 [Glycine max] gi|255635001|gb|ACU17859.1| unknown [Glycine max]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/456 (77%), Positives = 394/456 (86%), Gaps = 2/456 (0%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALAVR++VQ FLNAA TG++DLLKK+A QLD +GK L+K+V  IKDANKRGAL
Sbjct: 1   MAPDASDALAVRQKVQLFLNAARTGSIDLLKKLALQLD-EGKDLAKSVEAIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T VC+YLL +LKL VD+QD+DGET L+HAARQGHT TAKYL +HGA+PT+ S
Sbjct: 60  HFAAREGQTSVCEYLLTDLKLSVDSQDDDGETALIHAARQGHTATAKYLIDHGADPTVAS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           NLGATALHHSAGIG+ ELL YLLS+G   D ESDAGTPL+WAAGH Q  AV VLLEH AN
Sbjct: 120 NLGATALHHSAGIGDAELLKYLLSRGVNPDLESDAGTPLVWAAGHAQPAAVSVLLEHGAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D ITPLLSAVAAGSL CL+LLIQAGA ANI AGGATPLHIAAD GS E++ CLL
Sbjct: 180 PNAETDDGITPLLSAVAAGSLACLELLIQAGAKANISAGGATPLHIAADNGSLELLNCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           K GADP+V+DEDG KPIQVAAARG  +AVEILFPLTS+  +IP WTVDGILEYMQSE+ K
Sbjct: 240 KVGADPDVSDEDGVKPIQVAAARGYPKAVEILFPLTSKVDTIPTWTVDGILEYMQSETRK 299

Query: 301 QLEETRNLKENNAPKD-KAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQ 359
           Q +E+ N KE N PK+   P + +PEV PE KK+AAEAK RGD AFK+ D+ MA+D YTQ
Sbjct: 300 QQDESINAKETNQPKEADFPEQNVPEVAPEAKKRAAEAKPRGDGAFKRNDHHMAIDFYTQ 359

Query: 360 AIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD 419
           AID +P DATLLSNRSLCWI+LGQAEHALADAKACRALRPDWPKACYREGAALRLL+KFD
Sbjct: 360 AIDLNPIDATLLSNRSLCWIKLGQAEHALADAKACRALRPDWPKACYREGAALRLLQKFD 419

Query: 420 EAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT 455
           EAANAFYEGVTLDPENKELV AFREAVEA RKFHGT
Sbjct: 420 EAANAFYEGVTLDPENKELVNAFREAVEARRKFHGT 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125660|ref|XP_002319644.1| predicted protein [Populus trichocarpa] gi|222858020|gb|EEE95567.1| predicted protein [Populus trichocarpa]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/458 (74%), Positives = 394/458 (86%), Gaps = 19/458 (4%)

Query: 9   LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK 68
           +A R++VQ FL AAC GNLDLLK IA QLD +G G+S TVADIKDANKRGALHFAAREG+
Sbjct: 1   IAARQKVQHFLTAACVGNLDLLKNIASQLD-EGSGMSNTVADIKDANKRGALHFAAREGQ 59

Query: 69  TDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           T+VCKYL+EELKLDVDT+DEDGETP++HAARQGHT TAKYL + GANP + S++GATALH
Sbjct: 60  TEVCKYLIEELKLDVDTKDEDGETPIIHAARQGHTATAKYLLDQGANPVMRSDVGATALH 119

Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDN 188
           HSAGIGN EL+ YLLSKGAEVDS+SDAGTPLIWAAGHGQQ+A+KVLLEHHANPNAETED 
Sbjct: 120 HSAGIGNNELMEYLLSKGAEVDSQSDAGTPLIWAAGHGQQDALKVLLEHHANPNAETEDG 179

Query: 189 ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNV 248
           +TPLLSAVAAGSLTCL+LL+QAGA+ N+ +GGATPLHIAADIGS EI+ CLL+AGADPNV
Sbjct: 180 VTPLLSAVAAGSLTCLELLVQAGADVNVASGGATPLHIAADIGSPEILNCLLEAGADPNV 239

Query: 249 TDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL 308
           TDEDGQKPIQVAAARGNR AVEILFPLT++  SI KWTVDGILE+MQSE+ K+      +
Sbjct: 240 TDEDGQKPIQVAAARGNRAAVEILFPLTTKVQSISKWTVDGILEHMQSEANKK------V 293

Query: 309 KENNAPKDKAPMK-ELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD 367
           KE +A  D   +K +LPEV PE K++AAEAK+RGD+AFK+ +YL AV+ Y QAID DP++
Sbjct: 294 KEVDASGDTETLKRDLPEVSPEAKERAAEAKSRGDDAFKRNEYLTAVNDYAQAIDLDPTN 353

Query: 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE----------- 416
           A +LSNRSLCWIRLG+ + ALADAKACR L+PDWPKA YREGAALRLL+           
Sbjct: 354 AAVLSNRSLCWIRLGKPDQALADAKACRELKPDWPKAWYREGAALRLLQACLFFFLFSMG 413

Query: 417 KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454
           +FDEAAN+FYEGV LDPENKELV +FREAV+AGRKFHG
Sbjct: 414 RFDEAANSFYEGVKLDPENKELVKSFREAVDAGRKFHG 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442947|ref|XP_004139242.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin-1-like [Cucumis sativus]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/458 (77%), Positives = 391/458 (85%), Gaps = 6/458 (1%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA RE VQQFLNAA  GN+DLLK +A +LDD GKGLS TVADIKDAN     
Sbjct: 1   MAPDASDALAARETVQQFLNAARIGNIDLLKNLAARLDD-GKGLSGTVADIKDANX---- 55

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREGKT+VC++L+EELKLDVDT+DEDGETPL+HAARQGHT+TAKYL E GANP I S
Sbjct: 56  HFAAREGKTEVCRFLIEELKLDVDTRDEDGETPLIHAARQGHTDTAKYLVERGANPAIAS 115

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGNIELL +LLS+G +V+S+SDAGTPLIWAAGH QQEAVK+LLEHHAN
Sbjct: 116 DLGATALHHSAGIGNIELLNFLLSRGPDVNSQSDAGTPLIWAAGHAQQEAVKLLLEHHAN 175

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+D+ITPLLSAVAAGSL CLDLLIQAGA  NI AGGATPLHIAAD G+ EII  LL
Sbjct: 176 PNAETDDDITPLLSAVAAGSLACLDLLIQAGAKVNISAGGATPLHIAADSGNLEIINSLL 235

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           +AGADPN TDEDG KPIQVAAARG+R  VEIL PLTS    IP WT DGILEYMQ+E  K
Sbjct: 236 QAGADPNATDEDGLKPIQVAAARGSRAGVEILLPLTSAVKEIPNWTTDGILEYMQNEINK 295

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA 360
               +RN  E+N  KD    ++LPEV PE KKKAAEAK+RGD+AF  KD+  AVDAYTQA
Sbjct: 296 DQAVSRN-PEDNKHKDSTAREDLPEVSPEAKKKAAEAKSRGDDAFNTKDFHTAVDAYTQA 354

Query: 361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420
           ID DP+D TLLSNRSLCWIRLGQAEHALADAKACRAL+PDWPKACYREGAALRLL++F+E
Sbjct: 355 IDLDPTDGTLLSNRSLCWIRLGQAEHALADAKACRALKPDWPKACYREGAALRLLQRFEE 414

Query: 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           AAN+FYEGV LDP N  LV AFREAVEAGRKFHGTDK+
Sbjct: 415 AANSFYEGVQLDPNNMALVNAFREAVEAGRKFHGTDKQ 452

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130626|ref|XP_002328336.1| predicted protein [Populus trichocarpa] gi|222838051|gb|EEE76416.1| predicted protein [Populus trichocarpa]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/473 (72%), Positives = 402/473 (84%), Gaps = 18/473 (3%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MA DAS ALAVR++VQQFL AAC GNLDLLK IA QLD +GKG+SKTVA+IKDANKRGAL
Sbjct: 1   MASDASDALAVRQKVQQFLTAACIGNLDLLKNIAAQLD-EGKGMSKTVAEIKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAARE +T+VCKYL+EELKLDVDT+DEDGETPL+HAARQGHT TAKYL + GANP IPS
Sbjct: 60  HFAAREAQTEVCKYLIEELKLDVDTKDEDGETPLVHAARQGHTATAKYLLDQGANPAIPS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIGN EL+ YLLSKGAEV+S+SDAGTPL+WAAGHGQ +A+KVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGNTELMEYLLSKGAEVESQSDAGTPLLWAAGHGQLDALKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNA TED++TPLLSAVAAGSL CL+LL+QAGA+ N+ AGGATPLHIAAD+GS EI+  LL
Sbjct: 180 PNAATEDDVTPLLSAVAAGSLACLELLVQAGADVNVTAGGATPLHIAADLGSPEILNRLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           +AGAD NVTDEDGQKPIQVAAARGNREAVEILFPLT++  S+ +WTVDGIL +M SE+ K
Sbjct: 240 EAGADSNVTDEDGQKPIQVAAARGNREAVEILFPLTTKVQSVREWTVDGILVHMLSEANK 299

Query: 301 QLEETRNLKENNAPKD-KAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYT- 358
           + EETR +KE +A ++   P ++LPEV PE K++A EAK RGD+AF++K+YL AV+ YT 
Sbjct: 300 E-EETRIVKEIDASENMDMPKRDLPEVSPEAKERATEAKLRGDDAFRRKEYLTAVNDYTQ 358

Query: 359 -----QAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413
                QAID DP++AT+LSNRSL W+RLGQ + ALADA+AC+ L+PDW KA YREG+ALR
Sbjct: 359 VDVHLQAIDLDPTNATVLSNRSLSWMRLGQPDQALADARACKELKPDWSKAWYREGSALR 418

Query: 414 ---------LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK 457
                    L   F+EAAN+FYEGV LDP NKELV +FREAV+AGRKFHGTD+
Sbjct: 419 LLQACLLFLLFHGFEEAANSFYEGVRLDPGNKELVKSFREAVDAGRKFHGTDQ 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788021|emb|CAN69337.1| hypothetical protein VITISV_032631 [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/458 (75%), Positives = 381/458 (83%), Gaps = 27/458 (5%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDA  ALA R +VQQFL+      + +  ++A QLDD GKGL+ TVAD+KDANKRGAL
Sbjct: 1   MAPDAYAALATRNKVQQFLSMQLAQAILISSRLAAQLDD-GKGLAGTVADVKDANKRGAL 59

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T+VCKYLLEELKLDVD +DEDGETPLLHAARQGHT TAKYL +HGA+P IPS
Sbjct: 60  HFAAREGRTEVCKYLLEELKLDVDAKDEDGETPLLHAARQGHTVTAKYLLDHGADPAIPS 119

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
           +LGATALHHSAGIG+IELL +LLSKG ++DS+SDAGTPLIWAAGHGQ +AVKVLLEHHAN
Sbjct: 120 DLGATALHHSAGIGDIELLRFLLSKGVDIDSQSDAGTPLIWAAGHGQHDAVKVLLEHHAN 179

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAET+DNITPLLSAVAAGSL CL+LLIQAGA  NI+AGGATPLHIAADIGS EII CLL
Sbjct: 180 PNAETDDNITPLLSAVAAGSLACLELLIQAGARVNIIAGGATPLHIAADIGSPEIINCLL 239

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPNVTDEDGQK IQVAAARGNR  VEILFPLTS   S+P+WT+DGI+E+MQSE GK
Sbjct: 240 KAGADPNVTDEDGQKAIQVAAARGNRGVVEILFPLTSPIQSVPEWTIDGIIEHMQSEMGK 299

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA 360
           Q                       +V PE KKKAAEAK+RGD+AFK KDY MAVDAYTQA
Sbjct: 300 Q-----------------------QVSPEAKKKAAEAKSRGDDAFKAKDYYMAVDAYTQA 336

Query: 361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420
           ID DP+DATLLSNRSLCWIRLGQAEHAL DAKACRALRPDW KACYREGAA   L     
Sbjct: 337 IDVDPTDATLLSNRSLCWIRLGQAEHALDDAKACRALRPDWSKACYREGAA---LRLLLA 393

Query: 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           +AN+FYEGV LDPENKELV AFREAVEAGRKFH  D++
Sbjct: 394 SANSFYEGVKLDPENKELVNAFREAVEAGRKFHARDQE 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185083|ref|NP_001189808.1| ankyrin repeat family protein [Arabidopsis thaliana] gi|332640603|gb|AEE74124.1| ankyrin repeat family protein [Arabidopsis thaliana]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/454 (71%), Positives = 382/454 (84%), Gaps = 6/454 (1%)

Query: 1   MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
           MAPDAS ALA RE+VQQ LNAACTGNL+ LK +AKQLD +GK L+KTV  IKDANKRGAL
Sbjct: 225 MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLD-EGKDLTKTVESIKDANKRGAL 283

Query: 61  HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
           HFAAREG+T++C+YLLEELKL+ D +DE G+TPL+HAARQG  ET KYL E GA+P I S
Sbjct: 284 HFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIAS 343

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
            LGATALHH+AG G IELL  LLS+G  VDSES++GTPLIWAAGH Q+ AV+VLLEH+AN
Sbjct: 344 ELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNAN 403

Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL 240
           PNAETEDNITPLLSAVAAGSL+CL+LL++AGA AN+ AGGATPLHIAADIG+ E+I CLL
Sbjct: 404 PNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLL 463

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
           KAGADPN  DE+G +P++VAAAR NR+ VEILFPLT++  ++  WTVDGIL +M  ES K
Sbjct: 464 KAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHM--ESNK 521

Query: 301 QLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA 360
           + EE  N  ++   ++    K+LP V PE K KAAEAKARG +AF +KD+ MA+DAYTQA
Sbjct: 522 EQEENSNKAKS---QETGIKKDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQA 578

Query: 361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420
           IDFDP+D TL SNRSLCW+RLGQAEHAL+DAKACR L PDWPK C+REGAALRLL++FDE
Sbjct: 579 IDFDPTDHTLFSNRSLCWLRLGQAEHALSDAKACRELNPDWPKGCFREGAALRLLQRFDE 638

Query: 421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454
           AANAFYEGV L PE+KEL+ AFREAV+AGRKFHG
Sbjct: 639 AANAFYEGVLLSPESKELIDAFREAVDAGRKFHG 672

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2084868	456	TPR10 "AT3G04710" [Arabidopsis	0.978	0.982	0.680	3.4e-164
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.528	0.128	0.362	2.8e-31
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.528	0.128	0.358	4.5e-31
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.528	0.129	0.354	4.9e-30
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.528	0.130	0.354	2.1e-29
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.528	0.126	0.354	2.3e-29
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.528	0.213	0.358	3.7e-29
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.528	0.125	0.338	3.3e-26
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.486	0.216	0.336	7.8e-26
ZFIN|ZDB-GENE-010501-6	1173	ehmt2 "euchromatic histone-lys	0.447	0.174	0.344	9.8e-25

TAIR|locus:2084868 TPR10 "AT3G04710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1598 (567.6 bits), Expect = 3.4e-164, P = 3.4e-164
 Identities = 309/454 (68%), Positives = 363/454 (79%)

Query:     1 MAPDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGAL 60
             MAPDAS ALA RE+VQQ LNAACTGNL+ LK +AKQLD+ GK L+KTV  IKDANKRGAL
Sbjct:     1 MAPDASTALAAREKVQQILNAACTGNLEFLKNVAKQLDE-GKDLTKTVESIKDANKRGAL 59

Query:    61 HFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
             HFAAREG+T++C+YLLEELKL+ D +DE G+TPL+HAARQG  ET KYL E GA+P I S
Sbjct:    60 HFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIETVKYLLEQGADPNIAS 119

Query:   121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHAN 180
              LGATALHH+AG G IELL  LLS+G  VDSES++GTPLIWAAGH Q+ AV+VLLEH+AN
Sbjct:   120 ELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAGHDQKNAVEVLLEHNAN 179

Query:   181 PNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
             PNAETEDNITPLLSAVAAGSL+CL+LL++            TPLHIAADIG+ E+I CLL
Sbjct:   180 PNAETEDNITPLLSAVAAGSLSCLELLVKAGAKANVFAGGATPLHIAADIGNLELINCLL 239

Query:   241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
             KAGADPN  DE+G +P++VAAAR NR+ VEILFPLT++  ++  WTVDGIL +M  ES K
Sbjct:   240 KAGADPNQKDEEGNRPLEVAAARDNRKVVEILFPLTTKPETVSDWTVDGILAHM--ESNK 297

Query:   301 QLEETRNLKENNAPKDKAPMKELPEVRPEIXXXXXXXXXRGDEAFKQKDYLMAVDAYTQA 360
             + EE  N  ++     K   K+LP V PE          RG +AF +KD+ MA+DAYTQA
Sbjct:   298 EQEENSNKAKSQETGIK---KDLPVVSPEAKAKAAEAKARGQDAFHRKDFQMAIDAYTQA 354

Query:   361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE 420
             IDFDP+D TL SNRSLCW+RLGQAEHAL+DAKACR L PDWPK C+REGAALRLL++FDE
Sbjct:   355 IDFDPTDHTLFSNRSLCWLRLGQAEHALSDAKACRELNPDWPKGCFREGAALRLLQRFDE 414

Query:   421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHG 454
             AANAFYEGV L PE+KEL+ AFREAV+AGRKFHG
Sbjct:   415 AANAFYEGVLLSPESKELIDAFREAVDAGRKFHG 448

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000741 "karyogamy" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 346 (126.9 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 92/254 (36%), Positives = 133/254 (52%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +  S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   444 ASFMGHLPIVKNLLQ------RDASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 493

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E   
Sbjct:   494 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETAL 553

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL KGA     +  G TPL  AA +G+    ++LLEH A+PNA  ++ +TPL  AV   
Sbjct:   554 ALLEKGASQACMTKKGFTPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHN 613

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   614 HLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLH 673

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   674 LAAQEGHAEMVALL 687

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 342 (125.4 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
 Identities = 91/254 (35%), Positives = 134/254 (52%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   411 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 460

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct:   461 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 520

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct:   521 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 580

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   581 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 640

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   641 LAAQEGHAEMVALL 654

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 339 (124.4 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
 Identities = 90/254 (35%), Positives = 134/254 (52%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   407 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 456

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
                + + +D +TPL  AAR GHT   K L E+GA+P + +  G T LH +A  G+++   
Sbjct:   457 AKANAKAKDDQTPLHCAARIGHTGMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTAL 516

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LLEH A+PNA  ++ +TPL  AV   
Sbjct:   517 ALLEKEASQACMTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGLTPLHVAVHHN 576

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   577 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLH 636

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   637 LAAQEGHTEMVALL 650

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 328 (120.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 90/254 (35%), Positives = 130/254 (51%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   405 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 454

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G +E   
Sbjct:   455 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGQVETAL 514

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LL   A+PNA  ++ +TPL  AV   
Sbjct:   515 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHN 574

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   575 HLDIVRLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLH 634

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   635 LAAQEGHAEMVALL 648

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 328 (120.5 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 90/254 (35%), Positives = 130/254 (51%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   415 ASFMGHLPIVKNLLQ------RGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 464

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G +E   
Sbjct:   465 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGQVETAL 524

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LL   A+PNA  ++ +TPL  AV   
Sbjct:   525 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHN 584

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   585 HLDIVRLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLH 644

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   645 LAAQEGHAEMVALL 658

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 336 (123.3 bits), Expect = 3.7e-29, P = 3.7e-29
 Identities = 91/254 (35%), Positives = 131/254 (51%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             A+  G+L ++K + +      +  S  V+++K       LH AAR G T+V KYLL+  K
Sbjct:   410 ASFMGHLPIVKSLLQ------REASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN-K 459

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E   
Sbjct:   460 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETAL 519

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL K A     +  G TPL  AA +G+    ++LLEH A+PNA  +  +TPL  AV   
Sbjct:   520 ALLEKEASQTCMTKKGFTPLHVAAKYGKVRMAELLLEHDAHPNAAGKSGLTPLHVAVHHN 579

Query:   200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct:   580 HLDVVRLLLPRGGSPHSPALNGYTPLHIAAKQNQLEVARSLLQYGGSANAESVQGVTPLH 639

Query:   259 VAAARGNREAVEIL 272
             +AA  G+ E V +L
Sbjct:   640 LAAQEGHAEMVALL 653

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 318 (117.0 bits), Expect = 3.3e-26, P = 3.3e-26
 Identities = 86/254 (33%), Positives = 129/254 (50%)

Query:    21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
             AA  G+L+++K + +      +G S   +++K       LH AAR G  +V ++LL+   
Sbjct:   444 AAFMGHLNIVKSLLQ------RGASPNASNVKVETP---LHMAARAGHCEVAQFLLQN-N 493

Query:    81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
               VD + +D +TPL  AAR GH E  K L EH ANP   +  G T LH +A  G+ +   
Sbjct:   494 AQVDAKAKDDQTPLHCAARMGHKELVKLLMEHKANPDSATTAGHTPLHIAAREGHAQTTR 553

Query:   141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
              LL + A+    +  G TPL  A  +G+ + V++LLE  ANPNA  ++ +TPL  AV   
Sbjct:   554 ILLDENAQQTKMTKKGFTPLHVACKYGKVDVVELLLERGANPNAAGKNGLTPLHVAVHHN 613

Query:   200 SLTCLDLLIQXXXX-XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +L  + LL+              T LHIAA     E+   LL+ GA+ N     G  P+ 
Sbjct:   614 NLDVVKLLVSKGGSPHSTARNGYTALHIAAKQNQLEVASSLLQYGANANSESLQGITPLH 673

Query:   259 VAAARGNREAVEIL 272
             +A+  G  + V +L
Sbjct:   674 LASQEGQPDMVALL 687

GO:0007165 "signal transduction" evidence=IEA

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 314 (115.6 bits), Expect = 7.8e-26, P = 7.8e-26
 Identities = 76/226 (33%), Positives = 117/226 (51%)

Query:    49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
             AD K  + +  L +AA +GK  V + LL+      D+++  G+TP+ +AA +GH    + 
Sbjct:   633 ADSKTISGKTPLSYAASKGKESVVRLLLQH-GAQADSKNNTGQTPISYAASKGHESVVRL 691

Query:   109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQ 167
             L  HGA     +N G T L  +A  G+  ++   L  GA+ D  + D GTPL  AA  G 
Sbjct:   692 LLTHGAQADSKANWGQTPLSRAAFDGHESVVRLFLEHGAQADCKDGDGGTPLSSAAATGH 751

Query:   168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXX-TPLHI 226
             +  V++LL+H A  +++ +D  TPL  A + G  + + LL++             TPL  
Sbjct:   752 ESVVRLLLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEHGARADSKDDDFRTPLSY 811

Query:   227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             AA  G   ++K LL+ GA  +  D+D Q P+  AA+RG    V IL
Sbjct:   812 AASYGYESVVKLLLEHGARTDSKDKDSQTPLSYAASRGYESVVRIL 857

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-010501-6 ehmt2 "euchromatic histone-lysine N-methyltransferase 2" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 9.8e-25, P = 9.8e-25
 Identities = 72/209 (34%), Positives = 112/209 (53%)

Query:    55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
             N+R ALH AA+ G  ++C YLL +    VD QD+   TPLL A    H +  KYL + GA
Sbjct:   649 NRRCALHAAAQRGLLEIC-YLLVQAGAKVDAQDKSLRTPLLEAIVNNHVDVVKYLIQSGA 707

Query:   115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVK 172
                   + G+T LHH+A +GN+E++  LLS G  +++++   G TP+IWAA H   E ++
Sbjct:   708 CVYHAEDDGSTGLHHAAKLGNLEVVMLLLSTGQVDINAQDSGGWTPVIWAAEHRHIEVIR 767

Query:   173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIG 231
              LL   A+     ++    L  A  AGS    +L++              TPLHI+A  G
Sbjct:   768 ALLNRGADVTLRDKEMNVCLHWASFAGSAEIAELVLNAGCPLSSVNVHGDTPLHISAREG 827

Query:   232 STEIIKCLLKAGADPNVTDEDGQKPIQVA 260
              ++ +   L  GAD ++ +++G  P+ +A
Sbjct:   828 YSDCVTLFLSRGADIDIVNKEGDTPLSLA 856

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0022008 "neurogenesis" evidence=IGI

GO:0031017 "exocrine pancreas development" evidence=IGI

GO:0051570 "regulation of histone H3-K9 methylation" evidence=IGI

GO:0016740 "transferase activity" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-29
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-20
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-16
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	6e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-13
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-12
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-11
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-07
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	6e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	3e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.003
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.003
cd00851	103	cd00851, MTH1175, This uncharacterized conserved p	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  119 bits (299), Expect = 3e-32
 Identities = 53/117 (45%), Positives = 74/117 (63%), Gaps = 1/117 (0%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPL  AA +G  E VK+LLE+ A+ NA+  D  TPL  A   G L  + LL++ GA+ N 
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 217 V-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
               G TPLH+AA  G+ +++K LLK GAD N  D+DG+ P+ +AA  G+ E V++L
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  115 bits (290), Expect = 5e-31
 Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 2/127 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           + +D + R  LH AA  G  +V K LLE    DV+ +D DG TPL  AA+ GH E  K L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            E GA+       G T LH +A  GN++++  LL  GA+V++    G TPL  AA +G  
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 169 EAVKVLL 175
           E VK+LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  110 bits (276), Expect = 4e-29
 Identities = 58/158 (36%), Positives = 74/158 (46%), Gaps = 33/158 (20%)

Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           + +DEDG TPL  AA  GH E  K L E+GA+     N G T LH               
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLH--------------- 45

Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
                             AA +G  E VK+LLE  A+ NA  +D  TPL  A   G+L  
Sbjct: 46  -----------------LAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV 88

Query: 204 LDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240
           + LL++ GA+ N     G TPLH+AA  G  E++K LL
Sbjct: 89  VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           L  AA+ G+ E  K L E GA+  +      TALH +A  GN+E++  LL  GA+V+++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
             G T L  AA +G  E VK+LLEH A+ N +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 7e-21
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 1/92 (1%)

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240
           NA  ED  TPL  A + G L  + LL++ GA+ N     G TPLH+AA  G  EI+K LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           + GAD N  D+DG  P+ +AA  GN + V++L
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV- 217
           L  AA +G  E VK+LLE  A+ N    D  T L  A   G+L  + LL++ GA+ N   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 218 AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
             G T LH+AA  G+ EI+K LL+ GAD N+ D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.5 bits (207), Expect = 8e-20
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           LH AA+ G  ++ K LLE+   DV+  D D  T L  AAR G+ E  K L EHGA+    
Sbjct: 1   LHLAAKNGNLELVKLLLEK-GADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSE 152
              G TALH +A  GN+E++  LL  GA+++ +
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 30/224 (13%)

Query: 61  HFAAREGKT-DVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT-----ETAKYLFEHGA 114
            + A+E +  DV K LL+    D+++  ++  TPL + +   +      E  K L E+GA
Sbjct: 39  LYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGA 97

Query: 115 NPTIPSNLGATALHHSAG--IGNIELLTYLLSKGAEVDSESDAGTPLIWAA---GHGQQE 169
           N   P N G T L ++      +  ++ YLL  GA V+ ++  G  L+           +
Sbjct: 98  NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK 157

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA 228
            +K+L++   + NA+                   ++ L+  G   NI    G TPLH A 
Sbjct: 158 ILKLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVYGFTPLHYAV 200

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
              + E +K LL  GA+PN+ ++ G  P+ +A    N+E  ++L
Sbjct: 201 YNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 81.1 bits (201), Expect = 6e-19
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)

Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE 186
           LH +A  GN+EL+  LL KGA+V+   D  T L  AA +G  E VK+LLEH A+ NA+ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL-GDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV 217
           D  T L  A   G+L  + LL++ GA+ N+ 
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.5 bits (194), Expect = 5e-18
 Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 12/98 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           AA  GNL+L+K + +      KG     AD+   +   ALH AAR G  ++ K LL E  
Sbjct: 4   AAKNGNLELVKLLLE------KG-----ADVNLGDTDTALHLAARNGNLEIVKLLL-EHG 51

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            DV+ +D+DG T L  AAR G+ E  K L EHGA+  +
Sbjct: 52  ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 8e-17
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 192 LLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
           L  A   G+L  + LL++ GA+ N+     T LH+AA  G+ EI+K LL+ GAD N  D+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD-TALHLAARNGNLEIVKLLLEHGADVNAKDK 59

Query: 252 DGQKPIQVAAARGNREAVEIL 272
           DG   + +AA  GN E V++L
Sbjct: 60  DGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 81.2 bits (200), Expect = 1e-16
 Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 19/240 (7%)

Query: 32  KIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE 91
            I K L D G  +  ++  I    K             D+ K +L+   +DV+ +D + +
Sbjct: 82  DIIKLLIDNG--VDTSILPIPCIEK-------------DMIKTILDC-GIDVNIKDAELK 125

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           T L +A ++G  E+ K LFE+GA+  I  + G   +H +      +++  LL KGA  + 
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 152 ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           + + G +PL  AA +G    +K+L++H  +   + ++  TPL +A+     + ++LLI  
Sbjct: 186 KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINN 244

Query: 211 GANANIVAGGATPLHIAADIG-STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
            +  +    G+TPLH A +     +II  LL   AD ++ D  G+ PI  A    N++ V
Sbjct: 245 ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPV 304

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 2/173 (1%)

Query: 47  TVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
            + D+K  +    LH A  EG     + LL+  K   D   +DG TPL  A      +  
Sbjct: 59  AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIM 118

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
           K L   GA+P IP+    + LH +  +G+I+ +  L+   A +D E   G TPLI A   
Sbjct: 119 KLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK 178

Query: 166 GQQEAVKVLLEHHANPNAETED-NITPLLSAVAAGSLTCLDLLIQAGANANIV 217
           G     K+LL+  AN +   ++  +  L  A+    +  + L I+ GA+ NI+
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 80.0 bits (197), Expect = 3e-16
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 4/231 (1%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
             + AL  A   G+ D+ + LL+ + ++ + +  DG +P+  A +   +E  K L +HGA
Sbjct: 1   MDQVALCDAILFGELDIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGA 59

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHGQQEAVK 172
            P +      + LH +   G+++ +  LL  G   D     D  TPL  A    + + +K
Sbjct: 60  IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIG 231
           +L+   A+P+    D  +PL  AV  G +  ++LLI   A  +I    G TPL IA   G
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG 179

Query: 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSI 282
              I K LL +GA+ +   ++G       A   N+  +  LF     D +I
Sbjct: 180 DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 73/295 (24%), Positives = 105/295 (35%), Gaps = 54/295 (18%)

Query: 11  VRERVQQFLNAACTGNLD------LLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHF 62
           VR  +    +    G          L   ++++ D  + L +  AD+   +      LH 
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 63  AAREGKT-DVCKYLLEELKLDVDTQDEDGETPLLHAARQG---HTETAKYLFEHGANPTI 118
                 T DV K L++    DV+ +D+ G TPL H    G   + +  + L   GA+   
Sbjct: 90  YLYNATTLDVIKLLIK-AGADVNAKDKVGRTPL-HVYLSGFNINPKVIRLLLRKGADVNA 147

Query: 119 PSNLGATALH---HSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLL 175
               G T L     S    N+ELL  L+  GA+V +  D                 + LL
Sbjct: 148 LDLYGMTPLAVLLKSRNA-NVELLRLLIDAGADVYAVDDRF---------------RSLL 191

Query: 176 EHHAN------------------PNAETEDNITPLLSAVAAGSLTCLDL--LIQAGANAN 215
            HH                    P A      TPL S     S     +  L+ AG + N
Sbjct: 192 HHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN 251

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                G TPLH AA   +    + L+  GAD N    DG  P+ +     N  AV
Sbjct: 252 ARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAV 306

Length = 471

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 75.6 bits (186), Expect = 6e-15
 Identities = 40/101 (39%), Positives = 57/101 (56%)

Query: 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA 393
           A + + +  EAF   D+ +AVD YTQAID DP++A L ++R+   I+LG    A+ADA  
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 394 CRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE 434
              L P   KA  R+G A   LE++  A  A  +G +L P 
Sbjct: 62  AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102

Length = 356

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.8 bits (175), Expect = 3e-14
 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 11/183 (6%)

Query: 43  GLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH 102
            L  +    K  N    L        ++    L   +   +  +D DG  PL  AA +G 
Sbjct: 28  SLDLSNPSDKKLNLYLELALLPAASLSE--LLLKLIVDRHLAARDLDGRLPLHSAASKGD 85

Query: 103 TETAKYLFEHGANPTIPSNLGATALHHSA-----GIGNIELLTYLLSKGAEVD---SESD 154
            +  K L   GA+       G T LH +A       GNIE+   LL  GA++D      +
Sbjct: 86  DKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 155 AG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
            G TPL WAA +G  + V++LLE  A+PN+     +T L  A   G +  + LL+  G +
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Query: 214 ANI 216
            ++
Sbjct: 206 LSL 208

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.0 bits (173), Expect = 5e-14
 Identities = 58/199 (29%), Positives = 83/199 (41%), Gaps = 13/199 (6%)

Query: 87  DEDGETPLLHAARQGH----TETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
            +   + LL   +             L    +NP+         L         ELL  L
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +        + D   PL  AA  G  + VK+LL   A+ NA+  D  TPL  A   G+  
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP 120

Query: 203 -----CLDLLIQAGANANIVA----GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
                   LL++AGA+ ++       G TPLH AA  G  +I++ LL+AGADPN  +  G
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYG 180

Query: 254 QKPIQVAAARGNREAVEIL 272
              +  AA  G  E V++L
Sbjct: 181 VTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 73.4 bits (180), Expect = 5e-14
 Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 36/189 (19%)

Query: 75  LLEELKLDVDTQDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
           LL     D++ +D   G T L +A         + L  +GAN  IP     + LHH+   
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH 211

Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ-EAVKVLLEHHANPNAETEDNITP 191
            N  ++  LL  GA  D+    G TPL  + G+ +  + +K+LLEH  + NA++      
Sbjct: 212 YNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS------ 265

Query: 192 LLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
                       L L               T LH +  I S   +K LL+ GAD N  + 
Sbjct: 266 ----------YILGL---------------TALHSS--IKSERKLKLLLEYGADINSLNS 298

Query: 252 DGQKPIQVA 260
               P+  A
Sbjct: 299 YKLTPLSSA 307

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 50  DIKDANK-RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           ++KD +K   ALH+A       + + LL     +V+  D+   +PL HA +  +      
Sbjct: 161 NMKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 109 LFEHGANPTIPSNLGATALHHSAG-IGNIELLTYLLSKGAEVDSESDAGTPLIWAAGH-- 165
           L E+GA+       G T LH S G   + ++L  LL  G +V+++S     L   A H  
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS---YILGLTALHSS 276

Query: 166 -GQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
              +  +K+LLE+ A+ N+     +TPL SAV
Sbjct: 277 IKSERKLKLLLEYGADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQE 169
           EH  +P + SNL   A       GN  LL  LL    + D  +S   TPL  AA  G ++
Sbjct: 519 EHD-DPNMASNLLTVA-----STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED 572

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAAD 229
            V VLL+H  N +    +  T L +A++A       +L    + ++  A G   L  AA 
Sbjct: 573 CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL-LCTAAK 631

Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                 +K LLK G + +  D  G   +QVA A  + + V +L
Sbjct: 632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.8 bits (173), Expect = 3e-13
 Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 20/196 (10%)

Query: 88  EDGETPLLHAARQGHTETAKYLFEHGA-----NPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  TPL+ A R G  +  +   +HGA     N  IP  L  TA+     IG  +++  L
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPL-LTAIK----IGAHDIIKLL 87

Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +  G  VD+ S    P I      +++ +K +L+   + N +  +  T L  A+  G L 
Sbjct: 88  IDNG--VDT-SILPIPCI------EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLE 138

Query: 203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            + +L + GA+ NI    G  P+HIA      +IIK LL+ GA  NV D +G+ P+  AA
Sbjct: 139 SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA 198

Query: 262 ARGNREAVEILFPLTS 277
             G+   +++L    +
Sbjct: 199 EYGDYACIKLLIDHGN 214

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.9 bits (165), Expect = 6e-13
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ-----EAVKVLLE 176
           G   LH +A  G+ +++  LL+ GA+V+++   G TPL  AA +G       E  K+LLE
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 177 HHA---NPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGS 232
             A     N   ED  TPL  A   G    ++LL++AGA+ N     G T L  AA  G 
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192

Query: 233 TEIIKCLLKAG 243
            E++K LL  G
Sbjct: 193 IELVKLLLDKG 203

Length = 235

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 63.9 bits (156), Expect = 8e-13
 Identities = 33/97 (34%), Positives = 51/97 (52%)

Query: 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397
              G+  +K  DY  A++ Y +A++ DP +A    N +  + +LG+ E AL D +    L
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 398 RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE 434
            PD  KA Y  G A   L K++EA  A+ + + LDP 
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 65.2 bits (158), Expect = 6e-12
 Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 16/141 (11%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKT-----DVC 72
             +AA  G+  ++K +     D          + KDA+    LH AA  G       +V 
Sbjct: 77  LHSAASKGDDKIVKLLLASGAD---------VNAKDADGDTPLHLAALNGNPPEGNIEVA 127

Query: 73  KYLLE--ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
           K LLE        + +DEDG TPL  AA  G  +  + L E GA+P   ++ G TAL  +
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187

Query: 131 AGIGNIELLTYLLSKGAEVDS 151
           A  G IEL+  LL KG  +  
Sbjct: 188 AKNGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 65.4 bits (159), Expect = 3e-11
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 12/136 (8%)

Query: 297 ESGKQLEETRNLKENNAPKDKA--PMKELPEV---------RPEIKKKAAEAKARGDEAF 345
           ++ K+ E     K++ APK+    P  ELPE+           E KK AA+ K +G++A+
Sbjct: 79  QAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAY 138

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           + KD+  A+  Y++AI+  P D    SNR+ C   LG  E  + D  A   L PD+ KA 
Sbjct: 139 RNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197

Query: 406 YREGAALRLLEKFDEA 421
            R   A   L K+ +A
Sbjct: 198 NRRANAYDGLGKYADA 213

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 6/214 (2%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH-TETAKYLFE 111
           D  K   LH A++          L E   DV+ ++  GETPL   A+ G+ TE  + L  
Sbjct: 270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM 329

Query: 112 HGANPTIPSNLGATALHHSAGIG-NIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQQE 169
            GA+      L  T LH ++ +  N +++  LL  GA V++      TP+ +AA      
Sbjct: 330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVV 389

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAV-AAGSLTCLDLLIQAGANANIVAGG-ATPLHIA 227
            +  LL++ A+  A ++   T L  A+        +  LI  GAN N      +TPLH A
Sbjct: 390 IINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449

Query: 228 ADIG-STEIIKCLLKAGADPNVTDEDGQKPIQVA 260
                  ++I+ LL  GAD N  +   Q P+ +A
Sbjct: 450 CKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 18/178 (10%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE 78
           L  A TGN  LL+++ K         +K   DI D+  R  LH AA +G  D C  +L +
Sbjct: 530 LTVASTGNAALLEELLK---------AKLDPDIGDSKGRTPLHIAASKGYED-CVLVLLK 579

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAK--YLFEHGANPTIPSNLGATALHHSAGIGNI 136
              +V  +D +G T L +A    H +  +  Y F   ++P    +L  TA    A   ++
Sbjct: 580 HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTA----AKRNDL 635

Query: 137 ELLTYLLSKGAEVDSES-DAGTPLIWAAGHGQQEAVKVLLEHHAN-PNAETEDNITPL 192
             +  LL +G  VDSE     T L  A      + V++L+ + A+   A T+D+ +P 
Sbjct: 636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT 693

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 11/216 (5%)

Query: 75  LLEEL---KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131
           LLEEL   KLD D  D  G TPL  AA +G+ +    L +H  N  I    G TAL ++ 
Sbjct: 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599

Query: 132 GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
              + ++   +L   A +     AG  L  AA      A+K LL+   N ++E     T 
Sbjct: 600 SAKHHKIF-RILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658

Query: 192 LLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
           L  A+A   +  + LLI  GA+ +         +   D   TE+ + L K     ++T  
Sbjct: 659 LQVAMAEDHVDMVRLLIMNGADVDKA-------NTDDDFSPTELRELLQKRELGHSITIV 711

Query: 252 DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTV 287
           D     +    R        L   +S++   P+ ++
Sbjct: 712 DSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPRVSI 747

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           R ALH AA  G+ ++ KYLLE   +D++  DEDG T L  AA  G+ E  K L
Sbjct: 2   RTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 19/121 (15%)

Query: 49  ADIKDANKRG--ALHFAAR--EGKTDVCKYLLE---------------ELKLDVDTQDED 89
           A++   N  G   LH      +    + K L++                  + ++ +D  
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVY 191

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           G TPL +A    + E  KYL + GANP + +  G T LH +    N E+   LL+ G  +
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Query: 150 D 150
            
Sbjct: 252 K 252

Length = 422

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALAD 390
             A   K  G+  FK  DY  A++AY +A++ DP +A    N +L +++LG   E AL D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 391 AKACRALRP 399
            +    L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 182 NAETEDNITP---------LLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIG 231
           N  TE+ I P         L    A+G      +L+  GA+ N     G TPLHIA   G
Sbjct: 67  NLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG 126

Query: 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             ++++ LL+ GADP + D+DG+ P+++A   G RE V++L
Sbjct: 127 HVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 14/205 (6%)

Query: 82  DVDTQDEDGETPL---LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN-IE 137
           DV+ + E G+TPL   LH + +   +  + L E GA+   P   G T LH        ++
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 138 LLTYLLSKGAEVDSESDAG-TPL-IWAAGHGQQEAV-KVLLEHHANPNAETEDNITPL-- 192
           ++  L+  GA+V+++   G TPL ++ +G      V ++LL   A+ NA     +TPL  
Sbjct: 99  VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Query: 193 -LSAVAAGSLTCLDLLIQAGAN-ANIVAGGATPLHIAADI--GSTEIIKCLLKAGADPNV 248
            L +  A ++  L LLI AGA+   +     + LH           I++ L++AG DP  
Sbjct: 159 LLKSRNA-NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA 217

Query: 249 TDEDGQKPIQVAAARGNREAVEILF 273
           TD  G  P+   A   + +   +L 
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLP 242

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 23/52 (44%), Positives = 27/52 (51%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           T L  AA  G  E  KYL E G +       G TALH +A  GN+E+L  LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 53/215 (24%), Positives = 77/215 (35%), Gaps = 45/215 (20%)

Query: 49  ADI--KDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDGETPL--LHAARQGH 102
           AD+  KD   R  LH           V + LL     DV+  D  G TPL  L  +R  +
Sbjct: 108 ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNALDLYGMTPLAVLLKSRNAN 166

Query: 103 TETAKYLFEHGAN-----------------------------------PTIPSNLGATAL 127
            E  + L + GA+                                   P     LG T L
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Query: 128 HHSAGIGNIE--LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
           H  A   + +  L+  LL  G  +++ +  G TPL +AA      A + L+   A+ NA 
Sbjct: 227 HSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAV 286

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG 219
           + D  TPL   V   +   +   +    +A  VA 
Sbjct: 287 SSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA 321

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA-----DIGSTEI 235
            A   D   PL SA + G    + LL+ +GA+ N   A G TPLH+AA       G+ E+
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 236 IKCLLKAGA---DPNVTDEDGQKPIQVAAARGNREAVEILFP 274
            K LL+AGA     N+ DEDG  P+  AA  G+ + VE+L  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE 168

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 58.2 bits (140), Expect = 5e-09
 Identities = 77/262 (29%), Positives = 110/262 (41%), Gaps = 30/262 (11%)

Query: 11  VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD 70
           ++ER+QQ          D L  IA+ L + G  +     + KD      +H+AA  G   
Sbjct: 149 IKERIQQ----------DELL-IAEMLLEGGADV-----NAKDIYCITPIHYAAERGNAK 192

Query: 71  VCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
           +   LL     DV+    D  + L  A    + +T K + ++       SN+    L   
Sbjct: 193 MVNLLLS-YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN------RSNINKNDLSLL 245

Query: 131 AGIGNIELLTYLL--SKGAEVDSESD-AGTPLIWAA-GHGQQEAVKVLLEHHANPNAETE 186
             I N +L T LL    G  V+S  D   TPL  A+        V  LLE  A+ NA+  
Sbjct: 246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI 305

Query: 187 DNITPLLSAVAAGSLT-CLDLLIQAGANANIVAG-GATPLHIAADIG-STEIIKCLLKAG 243
              TPL      G  T  +  LI  GA+ N       TPLH A+ +  + +I+  LL+ G
Sbjct: 306 KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG 365

Query: 244 ADPNVTDEDGQKPIQVAAARGN 265
           A+ N  D   + PI  AA R N
Sbjct: 366 ANVNARDYCDKTPIHYAAVRNN 387

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 26  NLDLLKKIAKQLDDQGKGLSKTV-------ADIKDANKRG--ALHFAAREGKTDVCKYLL 76
           ++D  K        Q   LS+ V       AD+   N +G   L+  A+ G        L
Sbjct: 268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL 327

Query: 77  EELKLDVDTQDEDGETPLLHAAR-QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
             L  DV+  D    TPL  A+    + +    L E GAN         T +H++A   N
Sbjct: 328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN 387

Query: 136 IELLTYLLSKGAEVDSESDA-GTPLIWA-AGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
           + ++  LL  GA++++ S   GT L +A  G     +VK L++  AN N++ +D  TPL 
Sbjct: 388 VVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH 447

Query: 194 SAVAAG-SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245
            A      L  +++L+  GA+ N +      PL IA  +    I+  LL  GA+
Sbjct: 448 YACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGAE 499

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 7/205 (3%)

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           +L E   DV+ +D    TP+ +AA +G+ +    L  +GA+  I +    + L  +    
Sbjct: 163 MLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSK 222

Query: 135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
           NI+ +  ++   + ++        L+ A  +   E   +L +   + N+  +   TPL  
Sbjct: 223 NIDTIKAIIDNRSNINKND---LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 195 AVAAGSLTCL-DLLIQAGANANIV-AGGATPLHIAADIG-STEIIKCLLKAGADPNVTDE 251
           A  A SL+ L   L++ GA+ N     G TPL++ A  G  TE I+ L+  GAD N  D 
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR 339

Query: 252 DGQKPI-QVAAARGNREAVEILFPL 275
               P+ Q +    N++ V  L  L
Sbjct: 340 LYITPLHQASTLDRNKDIVITLLEL 364

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           T LH AA  G  E++K LL+ G D N TDEDG   + +AA  GN E +++L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 22/52 (42%), Positives = 26/52 (50%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
           T L  AA  G+ E VK LLE   + N   ED  T L  A   G+L  L LL+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
           G TPLH+AA  G  E++K LL+AGAD N  D+
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED-NITPLLSAVAAGSLTCLDLLIQ 209
           SE+    PLI+A      +A K+L+ + A+ N   E+  ITPL  +V  G L CL++L+ 
Sbjct: 66  SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLS 125

Query: 210 AGANANIVAGG-ATPLHIAADI 230
            GA+ NI      TP+ +A  I
Sbjct: 126 YGADINIQTNDMVTPIELALMI 147

Length = 300

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           LLE   +D++  D +G TPL  AA+ G  E  ++L + G +  +  + G TAL 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 51.2 bits (122), Expect = 6e-07
 Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 43/193 (22%)

Query: 127 LHHSAGIGNIE--LLTYLLSKGAEVDSESDAGT-PLIWAAGHGQQEAVKVLLEHHANPNA 183
           LH   GI  ++   +  LL +G   +   D G  PL  A+       V +LL H A+PNA
Sbjct: 41  LHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA 100

Query: 184 ETEDNITPL--LSAVAAGSLTCLDLLIQAGA--NANIVAGGATPL--------------- 224
             + + TPL  LS      +  ++LL+Q GA  N ++   G  PL               
Sbjct: 101 CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIM 160

Query: 225 -------------------HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR-- 263
                              H+ +D      I  ++K G  P+  D DG  P+ +  ++  
Sbjct: 161 SIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV 220

Query: 264 GNREAVEILFPLT 276
            N + + +L P T
Sbjct: 221 KNVDIINLLLPST 233

Length = 446

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 176 EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE 234
             H +PN  +      LL+  + G+   L+ L++A  + +I  + G TPLHIAA  G  +
Sbjct: 518 GEHDDPNMASN-----LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYED 572

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS-EDPSI 282
            +  LLK   + ++ D +G   +  A +  + +   IL+   S  DP  
Sbjct: 573 CVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA 621

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 190 TPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL 240
           T L  A  +G L  +  L++ G + N     G T LHIAA+ G+ E++K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 207 LIQAGANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
           L++ G          G TPLH+AA  G+ E+++ LLK G D N+ D DG   + +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 16/33 (48%), Positives = 17/33 (51%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSN 121
           DG TPL  AAR GH E  K L E GA+      
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 166 GQQEAVKVLLEHHAN-PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN-IVAGGATP 223
           G  EA++ ++++  N  N   ++  TPL+ A+ +G    ++L I+ GA+ N I      P
Sbjct: 12  GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP 71

Query: 224 LHIAADIGSTEIIKCLLKAGADPNV 248
           L  A  IG+ +IIK L+  G D ++
Sbjct: 72  LLTAIKIGAHDIIKLLIDNGVDTSI 96

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 40/182 (21%), Positives = 64/182 (35%), Gaps = 3/182 (1%)

Query: 93  PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE 152
           PL  A    + +  K L   G N   P +   T LH      N   +  ++    +  S 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINK-CSV 98

Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212
                 +  A  +   E  K++L +        +       S           LL+  GA
Sbjct: 99  FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA 158

Query: 213 NANIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
           + N+     G T LH A +     + + LL  GA+ N+ D+    P+  A    N+  V 
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVH 218

Query: 271 IL 272
           IL
Sbjct: 219 IL 220

Length = 477

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 26/146 (17%)

Query: 15  VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKY 74
           V+ F+N     N++ L       ++    L   +++IKD                D+ K 
Sbjct: 54  VKLFINLG--ANVNGLD------NEYSTPLCTILSNIKDYKH-----------MLDIVKI 94

Query: 75  LLEELKLDVDTQDEDGETP---LLHAARQGHTETAKYLFEHGANPTIPSNLGATALH--- 128
           L+E    D++ ++ DGETP   LL      + E   ++ E+GA+ T+    G T L    
Sbjct: 95  LIEN-GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153

Query: 129 HSAGIGNIELLTYLLSKGAEVDSESD 154
            S    +IE++  LL KG ++++ ++
Sbjct: 154 QSNHHIDIEIIKLLLEKGVDINTHNN 179

Length = 489

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNV 248
           G TPLH+AA+ G+ E++K LL  GAD N 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 45/215 (20%), Positives = 71/215 (33%), Gaps = 43/215 (20%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG-HTETAKYLFEHGAN 115
           +  L  A R     V + L E  KL+++  D  G + L  AA +  + E  + L      
Sbjct: 19  KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCR 78

Query: 116 PTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKV 173
             +    G T LH  +   +  +E +   L        +S                    
Sbjct: 79  GAV----GDTLLHAISLEYVDAVEAILLHLLA---AFRKSGPLELANDQYT--------- 122

Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA------------ 221
                   +  T   IT L  A    +   + LL++ GA+    A G             
Sbjct: 123 --------SEFTPG-ITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY 173

Query: 222 ---TPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
              +PL+ AA +GS  I+  L +  AD    D  G
Sbjct: 174 HGESPLNAAACLGSPSIVALLSEDPADILTADSLG 208

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 182 NAETEDNITPLLSAVAA--GSLTCLDLLIQAGANAN--IVAGGATPLHIAADIG---STE 234
           N   +   TP+ S +     ++  L  LI+ GA+ N        + LH           E
Sbjct: 45  NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPE 104

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQV 259
           I+K L+ +G+     DEDG+  + +
Sbjct: 105 ILKILIDSGSSITEEDEDGKNLLHM 129

Length = 209

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 10/209 (4%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           LH A      DV K LL     +V+  D    TPL    ++ +    K +       ++ 
Sbjct: 41  LHQAVEARNLDVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 120 SNLGA--TALHHSAGIGNIELLTYLLSKGAEVDSESD-AGTPLIWAAGHGQQEAVKVLLE 176
             L A   A ++     N+E+   +L+   +     D             + E  K+LL 
Sbjct: 100 YTLVAIKDAFNNR----NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLS 155

Query: 177 HHANPNAETEDNI-TPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE 234
           + A+ N +      T L  A         +LL+  GAN NI      +PLH A    +  
Sbjct: 156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKP 215

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           I+  LL+ GA  +  D+ G  P+ ++   
Sbjct: 216 IVHILLENGASTDARDKCGNTPLHISVGY 244

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLL 175
           TALH +A  G +EL+ YLL KG +++ ++ D  T L  AA +G  E +K+LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETE 186
           TPL  AA +G  E VK+LLE  A+ NA  +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNV 248
           G TPLH+AA  G+ E++K LL+ GAD N 
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 205 DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           DLL   G   +     +  L +A+  G+  +++ LLKA  DP++ D  G+ P+ +AA++G
Sbjct: 511 DLLGDNGGEHDDPNMASNLLTVAS-TGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKG 569

Query: 265 NREAVEIL 272
             + V +L
Sbjct: 570 YEDCVLVL 577

Length = 823

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTI 118
           DG TPL  AAR G+ E  K L EHGA+   
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 142 LLSKGAEV--DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           LL  G      ++ +  TPL  AA +G  E V+ LL+   + N    D +T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTI 118
           DG TPL  AA  G+ E  K L + GA+   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.3 bits (100), Expect = 2e-04
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 321 KELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-DATLLSNRSLCWI 379
           ++  E+ PE+ + A    A G        Y  A++   +A+  +P  DA  L N  L ++
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213

Query: 380 RLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           +LG+ E AL   +    L PD  +A Y     L  L +++EA  A  + + LDP+   L
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272

Length = 291

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 169 EAVKVLLEHHANPNAETEDN----ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA--T 222
           + +  +L+  A+P A    +      PL+ A+   +     LLI+ GA+ N  A  A  T
Sbjct: 47  DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106

Query: 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
           PL+I+   G  + ++ LL  GAD N+   D   PI++A
Sbjct: 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144

Length = 300

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL---IQAGANANIVAG-GATPLHI 226
           VK+L+E+ A+ N +  D  TPL   ++ G +  L++L   I+ GA+  ++   G T L +
Sbjct: 92  VKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV 151

Query: 227 AADIGST---EIIKCLLKAGADPNV 248
                     EIIK LL+ G D N 
Sbjct: 152 YLQSNHHIDIEIIKLLLEKGVDINT 176

Length = 489

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 190 TPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVT 249
           + L  A+A  ++  +  L+ AGA  N++     PLH AA +  T+I+K LL +G D +  
Sbjct: 32  SALYYAIADNNVRLVCTLLNAGALKNLLEN-EFPLHQAATLEDTKIVKILLFSGMDDSQF 90

Query: 250 DEDGQKPIQVAAARGNREAVEIL 272
           D+ G   +  A   GN + V++ 
Sbjct: 91  DDKGNTALYYAVDSGNMQTVKLF 113

Length = 284

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 22/101 (21%), Positives = 41/101 (40%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +GD      +  +A+ AY +AI   P++  +L   +   I  G+ E A   A A     P
Sbjct: 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAP 258

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF 440
           + P A Y +       + +++A     + +   PE    + 
Sbjct: 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALL 299

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SE 152
           L   A  G    A+ L   GA+P      G T LH +   G+++++  LL  GA+    +
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEH 177
            D  TPL  A  +G +E V++L  H
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           D + +D DG TPL  A   GH +  + L E GA+PT+    G T L   A       +  
Sbjct: 107 DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL-ELAEENGFREVVQ 165

Query: 142 LLSKGAEVDSESDAGTP 158
           LLS+ ++   E  A   
Sbjct: 166 LLSRHSQCHFELGANAK 182

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97
            +  D N    LH AA+ G  ++ ++LL+   +D++ +D DG T L  A
Sbjct: 8  DLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 25/98 (25%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVT----------DED----GQKPIQVAAARGN 265
           G T LH+AA   + EI+K LL+ GA                 D    G+ P+  AA  G+
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

Query: 266 REAVEILFPLTSEDPSIPK------WTVDGILEYMQSE 297
              V     L SEDP+          T+  +L  M++E
Sbjct: 188 PSIVA----LLSEDPADILTADSLGNTLLHLLV-MENE 220

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)

Query: 136 IELLTYLLSKGAEVDSESDAGTPLI------WAAGHGQQEAVKVLLEHHANPNAETEDNI 189
           I+++  L+  GA+V+ +    TPL           +  ++ VK+LL+  A+ N +T + +
Sbjct: 50  IKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGV 109

Query: 190 TPLLSAVAAGSLTCLD---LLIQAGANANIVAG--GATPLHIAAD--IGSTEIIKCLLKA 242
           +P++  +   ++   D    L+  G N N V    G   LH+  +      ++IK LL  
Sbjct: 110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF 169

Query: 243 GADP 246
           G + 
Sbjct: 170 GVNL 173

Length = 494

>gnl|CDD|238431 cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 82  DVDTQDEDG----ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH--HSAGI 133
           DV+T         E P  HA      + A++L + G +  I   +G  AL+   +AGI
Sbjct: 28  DVETGKIKNVEVIENPAAHATGGAGGKAAEFLADEGVDVVIVGGIGPRALNKLRNAGI 85

This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea). Length = 103

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESD 154
           G T LH +A  G++E++  LL  GA+V++   
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TPL  AA +G  E VK+LLEH A+ NA
Sbjct: 4   TPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.98
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0553	304	consensus TPR repeat-containing protein [General f	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.8
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
PRK15359	144	type III secretion system chaperone protein SscB;	99.72
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG4234	271	consensus TPR repeat-containing protein [General f	99.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.63
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.55
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
PRK11189	296	lipoprotein NlpI; Provisional	99.52
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.48
PRK15359	144	type III secretion system chaperone protein SscB;	99.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.45
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
PRK12370	553	invasion protein regulator; Provisional	99.38
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.38
PRK15331	165	chaperone protein SicA; Provisional	99.37
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.37
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.37
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.35
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.34
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.33
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.33
PRK12370	553	invasion protein regulator; Provisional	99.32
KOG1126	638	consensus DNA-binding cell division cycle control	99.31
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.31
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.3
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.3
KOG1125	579	consensus TPR repeat-containing protein [General f	99.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.29
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.29
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
KOG4555	175	consensus TPR repeat-containing protein [Function	99.27
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.27
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.27
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.26
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.25
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.24
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.23
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.23
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.22
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.19
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.17
KOG2076	895	consensus RNA polymerase III transcription factor	99.16
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.15
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.14
PRK10803	263	tol-pal system protein YbgF; Provisional	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.14
PLN02789	320	farnesyltranstransferase	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.11
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.07
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.06
KOG1125	579	consensus TPR repeat-containing protein [General f	99.06
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.04
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.03
PLN02789	320	farnesyltranstransferase	99.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.02
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.02
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.01
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.01
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.99
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.99
KOG2003	840	consensus TPR repeat-containing protein [General f	98.99
PF13371	73	TPR_9: Tetratricopeptide repeat	98.98
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.96
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.93
PF13371	73	TPR_9: Tetratricopeptide repeat	98.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.92
PF13512	142	TPR_18: Tetratricopeptide repeat	98.92
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.9
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.89
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.88
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.86
PF12688	120	TPR_5: Tetratrico peptide repeat	98.86
PRK14574	822	hmsH outer membrane protein; Provisional	98.86
KOG0553	304	consensus TPR repeat-containing protein [General f	98.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.8
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.8
PF13606	30	Ank_3: Ankyrin repeat	98.8
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.8
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.8
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.77
KOG1129	478	consensus TPR repeat-containing protein [General f	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.76
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.75
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.75
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.74
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.73
PF13606	30	Ank_3: Ankyrin repeat	98.73
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.73
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.71
PRK14574	822	hmsH outer membrane protein; Provisional	98.7
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.7
PLN03077	857	Protein ECB2; Provisional	98.68
PRK11906	458	transcriptional regulator; Provisional	98.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.64
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.64
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.63
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.63
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.62
PRK15331	165	chaperone protein SicA; Provisional	98.62
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.61
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.6
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.6
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.59
PF12688	120	TPR_5: Tetratrico peptide repeat	98.58
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.56
KOG2076	895	consensus RNA polymerase III transcription factor	98.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.54
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.52
KOG2003	840	consensus TPR repeat-containing protein [General f	98.5
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.49
PRK11906	458	transcriptional regulator; Provisional	98.48
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.48
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.46
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.46
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.45
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.45
KOG0511	516	consensus Ankyrin repeat protein [General function	98.42
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.42
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.4
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.4
KOG1310	758	consensus WD40 repeat protein [General function pr	98.39
KOG1129	478	consensus TPR repeat-containing protein [General f	98.39
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.38
KOG0522	560	consensus Ankyrin repeat protein [General function	98.38
PLN03218	1060	maturation of RBCL 1; Provisional	98.36
PRK10803	263	tol-pal system protein YbgF; Provisional	98.36
KOG4234	271	consensus TPR repeat-containing protein [General f	98.35
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.33
PF13428	44	TPR_14: Tetratricopeptide repeat	98.33
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.32
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.31
PF13431	34	TPR_17: Tetratricopeptide repeat	98.3
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.29
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.26
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.24
PF13428	44	TPR_14: Tetratricopeptide repeat	98.24
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.24
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.23
PF13431	34	TPR_17: Tetratricopeptide repeat	98.21
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.2
PLN03077	857	Protein ECB2; Provisional	98.18
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.18
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.16
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.16
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.16
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.11
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.1
PLN03218	1060	maturation of RBCL 1; Provisional	98.1
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.09
KOG2384	223	consensus Major histocompatibility complex protein	98.08
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.07
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.05
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.01
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.0
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.98
KOG4555	175	consensus TPR repeat-containing protein [Function	97.97
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.97
KOG2384	223	consensus Major histocompatibility complex protein	97.93
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.91
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.9
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.89
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.86
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.85
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.85
KOG0511	516	consensus Ankyrin repeat protein [General function	97.85
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.84
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.83
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.8
PF13512	142	TPR_18: Tetratricopeptide repeat	97.79
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.78
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.77
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.72
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.71
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.7
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.65
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.63
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.58
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.56
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.54
KOG3364	149	consensus Membrane protein involved in organellar	97.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.51
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.48
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.47
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.41
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PRK10941	269	hypothetical protein; Provisional	97.37
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.36
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.3
KOG2505	591	consensus Ankyrin repeat protein [General function	97.23
KOG2471	696	consensus TPR repeat-containing protein [General f	97.22
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.2
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.2
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.2
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.17
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.14
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.1
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.09
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.06
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.06
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.04
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.02
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.02
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.01
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.0
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.0
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.99
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.98
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.98
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.98
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.93
PRK10941	269	hypothetical protein; Provisional	96.93
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.89
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.88
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.86
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.84
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.84
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.79
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.76
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.74
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.74
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.69
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.56
PRK04841	903	transcriptional regulator MalT; Provisional	96.54
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.54
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.52
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.44
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.4
PRK04841	903	transcriptional regulator MalT; Provisional	96.39
KOG1586	288	consensus Protein required for fusion of vesicles	96.32
KOG2505	591	consensus Ankyrin repeat protein [General function	96.05
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.89
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.87
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.85
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.83
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.82
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.73
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.68
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.67
COG2912	269	Uncharacterized conserved protein [Function unknow	95.58
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.57
KOG3364	149	consensus Membrane protein involved in organellar	95.51
KOG2471	696	consensus TPR repeat-containing protein [General f	95.5
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.38
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.29
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.29
KOG1586	288	consensus Protein required for fusion of vesicles	95.18
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.18
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.17
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.15
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.08
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.07
KOG1585	308	consensus Protein required for fusion of vesicles	95.0
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.0
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.96
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	94.96
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.81
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.68
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.63
KOG1585	308	consensus Protein required for fusion of vesicles	94.5
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.36
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.26
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.24
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.1
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.09
COG2912	269	Uncharacterized conserved protein [Function unknow	94.01
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.98
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.94
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.86
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.84
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.71
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.63
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.27
KOG1310	758	consensus WD40 repeat protein [General function pr	93.26
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.18
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.98
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.91
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.82
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.17
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.13
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	92.09
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.93
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.75
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.65
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.57
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.11
KOG1258	577	consensus mRNA processing protein [RNA processing	90.99
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.46
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.42
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.0
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.82
KOG2047	835	consensus mRNA splicing factor [RNA processing and	89.77
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.74
COG3898	531	Uncharacterized membrane-bound protein [Function u	89.7
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.38
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.36
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.32
PHA02537	230	M terminase endonuclease subunit; Provisional	88.61
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.56
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.56
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.56
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	88.45
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	88.31
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	88.15
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.13
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	88.1
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.0
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.53
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.23
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.08
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.95
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.72
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.17
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.05
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.88
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.82
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.8
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.56
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	85.42
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	85.31
COG3947	361	Response regulator containing CheY-like receiver a	85.23
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.16
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	85.14
COG3947	361	Response regulator containing CheY-like receiver a	84.82
COG5191	435	Uncharacterized conserved protein, contains HAT (H	84.23
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	83.99
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.69
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	83.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.09
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.98
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	82.73
KOG2047	835	consensus mRNA splicing factor [RNA processing and	82.68
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.06
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	81.89
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	81.82
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.18
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	81.08
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.04
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	80.19

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-39  Score=315.35  Aligned_cols=286  Identities=24%  Similarity=0.345  Sum_probs=246.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~   95 (458)
                      ..|..|+..||++.|++|++.        .+...+..+..|.||||.|+..|+.++|++|++. |++++..+..|.||||
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~--------~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~   73 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKN--------KGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLL   73 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHc--------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHH
Confidence            368899999999999999976        2223456677899999999999999999999997 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCC-----------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 012683           96 HAARQGHTETAKYLFEHGAN-----------------------PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE  152 (458)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  152 (458)
                      .|+..|+.+++++|+++|++                       ++..+..|.||||+|+..|+.+++++|++.|++++..
T Consensus        74 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~  153 (434)
T PHA02874         74 TAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE  153 (434)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc
Confidence            99999999999999987654                       5567889999999999999999999999999999877


Q ss_pred             CCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683          153 SDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (458)
Q Consensus       153 ~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (458)
                      +..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||.|+..
T Consensus       154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            6655 9999999999999999999999999999999999999999999999999999999999877 7799999999998


Q ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhh
Q 012683          231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLK  309 (458)
Q Consensus       231 ~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  309 (458)
                      +. +++.+|+ .|++++.+|..|+||||+|+..+ +.+++++|+.++.+. +..+..+.+++.++.... .....+..++
T Consensus       234 ~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~-n~~d~~g~TpL~~A~~~~-~~~~~ik~ll  309 (434)
T PHA02874        234 NR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADI-SIKDNKGENPIDTAFKYI-NKDPVIKDII  309 (434)
T ss_pred             Ch-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHhC-CccHHHHHHH
Confidence            65 5677776 58999999999999999999876 899999999987654 445555666666554322 2344556666


Q ss_pred             cCCCC
Q 012683          310 ENNAP  314 (458)
Q Consensus       310 ~~~~~  314 (458)
                      .....
T Consensus       310 ~~~~~  314 (434)
T PHA02874        310 ANAVL  314 (434)
T ss_pred             HhcCc
Confidence            65543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7e-40  Score=324.63  Aligned_cols=258  Identities=29%  Similarity=0.465  Sum_probs=239.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHH-----HHHcCCHHHHHHHHHhCCCCCCC
Q 012683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF-----AAREGKTDVCKYLLEELKLDVDT   85 (458)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~-----A~~~g~~~~v~~ll~~~~~~~~~   85 (458)
                      .+...++||.|+..|+.++|+.|++.    |..+     +..+..|.||||+     |+..|+.+++++|++. |++++.
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~----g~~~-----~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~  101 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDN----GADI-----NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNA  101 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHc----CCCC-----CCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCC
Confidence            34567899999999999999999986    3332     4567789999999     9999999999999997 999999


Q ss_pred             CCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCC-cHHH
Q 012683           86 QDEDGETPLLHAA--RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDSESDAG-TPLI  160 (458)
Q Consensus        86 ~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-t~l~  160 (458)
                      .+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||.|+..|  +.+++++|++.|++++..+..+ ||||
T Consensus       102 ~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~  181 (480)
T PHA03100        102 PDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLH  181 (480)
T ss_pred             CCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence            9999999999999  999999999999999999999999999999999999  9999999999999998766544 9999


Q ss_pred             HHHhCCCHHHHHHHHhcCCCCCCCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC
Q 012683          161 WAAGHGQQEAVKVLLEHHANPNAETEDN------ITPLLSAVAAGS--LTCLDLLIQAGANANIV-AGGATPLHIAADIG  231 (458)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~  231 (458)
                      +|+..|+.+++++|+++|++++..+..|      .||+|.|+..|+  .+++++|++.|++++.. ..|.||||+|+..|
T Consensus       182 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        182 IAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             HHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999999999998888      899999999999  99999999999999987 77999999999999


Q ss_pred             cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       232 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      +.+++++|+++|++++.+|..|.||+|+|+..++.+++++|+++++.
T Consensus       262 ~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        262 NPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999998874

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=309.80  Aligned_cols=256  Identities=27%  Similarity=0.398  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHh--------------
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE--------------   78 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~--------------   78 (458)
                      .+.++||.|+..|+.++|++|++.    |+.+     +..+..|.||||.|+..|+.+++++|++.              
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~----Ga~~-----n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~  104 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKH----GADI-----NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEK  104 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCH
Confidence            456899999999999999999986    3333     45677899999999999999999999875              


Q ss_pred             --------CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 012683           79 --------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD  150 (458)
Q Consensus        79 --------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  150 (458)
                              .|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC
Confidence                    134567788899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683          151 SESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (458)
Q Consensus       151 ~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (458)
                      ..+..+ ||||+|+..|+.+++++|++.|.+++..+..|.||||.|+..+. +.+.+|+ .|++++.. ..|.||||+|+
T Consensus       185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~  262 (434)
T PHA02874        185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAI  262 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHH
Confidence            766555 99999999999999999999999999999999999999999865 5666666 58888877 77999999999


Q ss_pred             hcC-cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhcCCCCCC
Q 012683          229 DIG-STEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILFPLTSED  279 (458)
Q Consensus       229 ~~~-~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~  279 (458)
                      ..+ +.+++++|+++|++++.+|..|+||||+|+.++ +.++++.|+..+...
T Consensus       263 ~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        263 NPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             hcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence            876 899999999999999999999999999999987 778899999876543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.5e-39  Score=287.86  Aligned_cols=232  Identities=17%  Similarity=0.171  Sum_probs=206.9

Q ss_pred             cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683           24 TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT  103 (458)
Q Consensus        24 ~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  103 (458)
                      .++.++++.|++.    ++       +..|.+|.||||+|+..|+.+++++|++. |++++..+  |.||||+|+..|+.
T Consensus         9 ~~~~~~~~~Lis~----~a-------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d--~~TpLh~Aa~~g~~   74 (284)
T PHA02791          9 WKSKQLKSFLSSK----DA-------FKADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQAATLEDT   74 (284)
T ss_pred             cCHHHHHHHHHhC----CC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC--CCCHHHHHHHCCCH
Confidence            4678888988875    21       35788999999999999999999999997 88887754  78999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHHHHhCCCHHHHHHHHhcCCCC
Q 012683          104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANP  181 (458)
Q Consensus       104 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~A~~~~~~~~~~~Ll~~~~~~  181 (458)
                      +++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..+  ||||+|+..|+.+++++|++++.+.
T Consensus        75 eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791         75 KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999998766543  8999999999999999999987543


Q ss_pred             CCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH-HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683          182 NAET-EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP-LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ  258 (458)
Q Consensus       182 ~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~  258 (458)
                        .+ ..|.||||+|+..|+.++++.|+++|++++.. ..|.|| ||+|+..|+.++|++|+++|++++.+|..| +++ 
T Consensus       155 --~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l-  230 (284)
T PHA02791        155 --FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL-  230 (284)
T ss_pred             --cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC-
Confidence              23 35899999999999999999999999999987 557766 999999999999999999999999999854 555 


Q ss_pred             HHHHcCCHHHHHhhcCCCCC
Q 012683          259 VAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       259 ~A~~~~~~~~v~~Ll~~~~~  278 (458)
                           ++.|++++|+++..+
T Consensus       231 -----~~~e~~~~ll~~~~~  245 (284)
T PHA02791        231 -----DDAEIAKMIIEKHVE  245 (284)
T ss_pred             -----CCHHHHHHHHHhhhh
Confidence                 889999999987653

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=299.46  Aligned_cols=251  Identities=19%  Similarity=0.288  Sum_probs=159.8

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCC
Q 012683           10 AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQD   87 (458)
Q Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~   87 (458)
                      .+..+.-+++.++..|+.+.++.+++....              ..+.++||.++.  .++.++|++|+++ |++++.+|
T Consensus         5 ~~~~~~~sl~~~~~~~n~~~~~~~l~~~~~--------------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~d   69 (446)
T PHA02946          5 MSAEYYLSLYAKYNSKNLDVFRNMLQAIEP--------------SGNYHILHAYCGIKGLDERFVEELLHR-GYSPNETD   69 (446)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHhccCC--------------CCCChHHHHHHHhcCCCHHHHHHHHHC-cCCCCccC
Confidence            455666677777777777777777654111              113466666543  2345666666665 66666666


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCC-CC-CCCcHHHHHH
Q 012683           88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDS-ES-DAGTPLIWAA  163 (458)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~-~~-~~~t~l~~A~  163 (458)
                      ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..+  ..+++++|++.|++++. .+ .+.|||+ |+
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa  148 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC  148 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH
Confidence            66777777777777777777777777776666666777777666544  35666667776666653 22 3336665 44


Q ss_pred             hCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC--cHHHHHH
Q 012683          164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS--LTCLDLLIQAGANANIV-AGGATPLHIAADIG--STEIIKC  238 (458)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~--~~~iv~~  238 (458)
                      ..++.+++++|++.|++++..+..|+||||.|+..++  .+++++|+++|++++.. ..|+||||+|+..|  +.+++++
T Consensus       149 ~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l  228 (446)
T PHA02946        149 TDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINL  228 (446)
T ss_pred             HCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence            5566666777777666666666667777766655433  46666677777666655 45667777776654  5666666


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCCCC
Q 012683          239 LLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPLTS  277 (458)
Q Consensus       239 Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~  277 (458)
                      |++ |++++.+|..|+||||+|+..++ .+++++|+.++.
T Consensus       229 Ll~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        229 LLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            664 66666666677777777666665 366666666654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-38  Score=312.08  Aligned_cols=285  Identities=24%  Similarity=0.281  Sum_probs=229.0

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC---CHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683           18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG---KTDVCKYLLEELKLDVDTQDEDGETPL   94 (458)
Q Consensus        18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L   94 (458)
                      .+.++..+++++|+.|++.    |+++     +..+..|.||||+|+..|   +.+++++|++. |++++.++..|.|||
T Consensus        18 ~~~~~~~~~~~~v~~Ll~~----ga~v-----n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpL   87 (471)
T PHA03095         18 YLLNASNVTVEEVRRLLAA----GADV-----NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPL   87 (471)
T ss_pred             HHHcCCCCCHHHHHHHHHc----CCCc-----ccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence            3667888889999988876    3333     566778889999999888   88889988887 888888888899999


Q ss_pred             HHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--CH
Q 012683           95 LHAARQG-HTETAKYLFEHGANPTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQ  168 (458)
Q Consensus        95 ~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--~~  168 (458)
                      |+|+..| +.+++++|+++|++++..+..|.||||+|+  ..++.+++++|++.|++++..+..+ ||||+|+..+  +.
T Consensus        88 h~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~  167 (471)
T PHA03095         88 HLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANV  167 (471)
T ss_pred             HHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCH
Confidence            9999988 588999999999998888888999999988  4567888999999988888766555 8998888765  57


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcH--HHHHHHHHcC
Q 012683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAA--GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST--EIIKCLLKAG  243 (458)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~--~iv~~Ll~~g  243 (458)
                      +++++|+++|++++..+..|.||||.++..  ++.++++.|++.|++++.. ..|+||||+|+..|+.  .+++.|++.|
T Consensus       168 ~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g  247 (471)
T PHA03095        168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG  247 (471)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC
Confidence            888999998888888888888999888765  6778888888988888877 6788999999888864  5788888888


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCC
Q 012683          244 ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK  315 (458)
Q Consensus       244 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (458)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++ ++..+..+.+++.++  ......+.+..++..++..
T Consensus       248 ~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A--~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        248 ISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLM--VRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHH--HHhCCHHHHHHHHHhCCCH
Confidence            88888888899999999988889999998888754 344444455554443  4445667777777776654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-38  Score=312.84  Aligned_cols=278  Identities=27%  Similarity=0.345  Sum_probs=248.9

Q ss_pred             ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHH-----HHHc
Q 012683           26 NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH-----AARQ  100 (458)
Q Consensus        26 ~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-----A~~~  100 (458)
                      ..++++++++.         ....+..+..+.||||.|+..|+.++|++|++. |++++..+..+.||||+     |+..
T Consensus        14 ~~~~~~~~~~~---------~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~~~~~~t~L~~~~~~~a~~~   83 (480)
T PHA03100         14 KVKNIKYIIME---------DDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLT   83 (480)
T ss_pred             HHHHHHHHHhc---------CccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCccccCcCHHHHHHHHHHHhh
Confidence            34556666643         133456778899999999999999999999998 99999999999999999     9999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--CHHHHHHHH
Q 012683          101 GHTETAKYLFEHGANPTIPSNLGATALHHSA--GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQEAVKVLL  175 (458)
Q Consensus       101 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--~~~~~~~Ll  175 (458)
                      |+.+++++|+++|++++..+..|.||||+|+  ..|+.+++++|++.|++++..+..+ ||||+|+..+  +.+++++|+
T Consensus        84 ~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll  163 (480)
T PHA03100         84 DVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI  163 (480)
T ss_pred             chHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH
Confidence            9999999999999999999999999999999  9999999999999999998776655 9999999999  999999999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC------CcHHHHHHhcCc--HHHHHHHHHcCCCC
Q 012683          176 EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG------ATPLHIAADIGS--TEIIKCLLKAGADP  246 (458)
Q Consensus       176 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g------~t~L~~A~~~~~--~~iv~~Ll~~g~~~  246 (458)
                      ++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|      .||||.|+..|+  .+++++|+++|+++
T Consensus       164 ~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di  243 (480)
T PHA03100        164 DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI  243 (480)
T ss_pred             HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999999977 556      899999999999  99999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCC
Q 012683          247 NVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKD  316 (458)
Q Consensus       247 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (458)
                      +.+|..|.||||+|+..|+.+++++|++.|+ +.+..+..+.+++.++.  .....+.+..+++.++...
T Consensus       244 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga-d~n~~d~~g~tpl~~A~--~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        244 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA-NPNLVNKYGDTPLHIAI--LNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCCcHHHHHH--HhCCHHHHHHHHhcCCCHH
Confidence            9999999999999999999999999999988 55555555666655544  4467888888988887543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.5e-38  Score=308.78  Aligned_cols=255  Identities=24%  Similarity=0.278  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHcC---ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC-CHHHHHHHHHhCCCCCCCCCCC
Q 012683           14 RVQQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG-KTDVCKYLLEELKLDVDTQDED   89 (458)
Q Consensus        14 ~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~   89 (458)
                      +.++||.|+..|   +.++++.|++.    |++     .+..+..|.||||+|+..| +.+++++|++. |++++..+..
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~----Gad-----in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~-ga~in~~~~~  116 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEA----GAD-----VNAPERCGFTPLHLYLYNATTLDVIKLLIKA-GADVNAKDKV  116 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHC----CCC-----CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc-CCCCCCCCCC
Confidence            467999999999   99999999986    444     3667789999999999999 59999999998 9999999999


Q ss_pred             CCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHh
Q 012683           90 GETPLLHAA--RQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG--NIELLTYLLSKGAEVDSESDAG-TPLIWAAG  164 (458)
Q Consensus        90 g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~  164 (458)
                      |.||||+|+  ..++.+++++|+++|++++..+..|.||||+|+..+  +.+++++|++.|++++..+..+ ||||+++.
T Consensus       117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~  196 (471)
T PHA03095        117 GRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ  196 (471)
T ss_pred             CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            999999999  556899999999999999999999999999998876  6899999999999987765544 99999987


Q ss_pred             C--CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHH
Q 012683          165 H--GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL--TCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL  239 (458)
Q Consensus       165 ~--~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~L  239 (458)
                      .  +..++++.|++.|++++.++..|.||||+|+..|+.  .+++.|++.|++++.. ..|.||||+|+..|+.++|++|
T Consensus       197 ~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~L  276 (471)
T PHA03095        197 SFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRL  276 (471)
T ss_pred             HCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5  788999999999999999999999999999999975  6889999999999988 6899999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          240 LKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       240 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      +++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus       277 L~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        277 IALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999987653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.9e-37  Score=307.91  Aligned_cols=283  Identities=22%  Similarity=0.246  Sum_probs=186.1

Q ss_pred             HcCChHHHHHHHHHhhhcC-CCchhhhhhhc-ccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 012683           23 CTGNLDLLKKIAKQLDDQG-KGLSKTVADIK-DANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAA   98 (458)
Q Consensus        23 ~~g~~~~v~~ll~~~~~~~-~~~~~~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~   98 (458)
                      +.++.++|++|++.    | +++     +.. +..|.||||.|+.  +++.+++++|++. |++++..|..|.||||+|+
T Consensus       151 ~~v~leiVk~LLe~----G~ADI-----N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa  220 (764)
T PHA02716        151 RGIDLDLIKYMVDV----GIVNL-----NYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYL  220 (764)
T ss_pred             cCCCHHHHHHHHHC----CCCCc-----ccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            35777777777765    3 222     333 5667777777653  3567777777776 7777777777777777777


Q ss_pred             HcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH-------------------------------------HHcCCHHHH
Q 012683           99 RQGH--TETAKYLFEHGANPTIPSNLGATALHHS-------------------------------------AGIGNIELL  139 (458)
Q Consensus        99 ~~g~--~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-------------------------------------~~~~~~~~~  139 (458)
                      ..|+  .++|++|+++|++++.++..|.||||.|                                     +..|+.+++
T Consensus       221 ~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiV  300 (764)
T PHA02716        221 ITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV  300 (764)
T ss_pred             HcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHH
Confidence            7774  4777777777777777777777777754                                     334667777


Q ss_pred             HHHHhCCCCCCCCCCCC-cHHHHHHh--CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--------------cCCHH
Q 012683          140 TYLLSKGAEVDSESDAG-TPLIWAAG--HGQQEAVKVLLEHHANPNAETEDNITPLLSAVA--------------AGSLT  202 (458)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~-t~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--------------~~~~~  202 (458)
                      ++|++.|++++..+..+ ||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.              .++.+
T Consensus       301 klLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~e  380 (764)
T PHA02716        301 YSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLD  380 (764)
T ss_pred             HHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHH
Confidence            77777777777665544 77777653  346777777777777777777777777777654              25677


Q ss_pred             HHHHHHHcCCCcccc-CCCCcHHHH----HHhcCcHHHHHHHHHcCC---------------------------------
Q 012683          203 CLDLLIQAGANANIV-AGGATPLHI----AADIGSTEIIKCLLKAGA---------------------------------  244 (458)
Q Consensus       203 ~~~~Ll~~g~~~~~~-~~g~t~L~~----A~~~~~~~iv~~Ll~~g~---------------------------------  244 (458)
                      ++++|+++|++++.. ..|.||||.    |...++.+++++|++.|+                                 
T Consensus       381 VVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~  460 (764)
T PHA02716        381 VIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIP  460 (764)
T ss_pred             HHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcc
Confidence            777777777777766 567777773    222356677777666432                                 


Q ss_pred             ----------------------------CCCCCCCCCCcHHHHHHHcCCH-----HHHHhhcCCCCCCCCCCCcchhhHH
Q 012683          245 ----------------------------DPNVTDEDGQKPIQVAAARGNR-----EAVEILFPLTSEDPSIPKWTVDGIL  291 (458)
Q Consensus       245 ----------------------------~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~~~~~~~~~~~  291 (458)
                                                  +++..|..|+||||+|+..|+.     +++++|++.|.. .+..+..+.+++
T Consensus       461 ~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD-IN~~d~~G~TPL  539 (764)
T PHA02716        461 TDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN-INIPTKNGVTPL  539 (764)
T ss_pred             hhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC-CcccCCCCCCHH
Confidence                                        1233466777777777777765     344777777654 334455555555


Q ss_pred             HHHHhhcc---chhHHhhhhhcCCCCCC
Q 012683          292 EYMQSESG---KQLEETRNLKENNAPKD  316 (458)
Q Consensus       292 ~~~~~~~~---~~~~~~~~l~~~~~~~~  316 (458)
                      .++.....   .+.+.+..+++.++..+
T Consensus       540 h~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        540 MLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             HHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            55443321   13466777777665554

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=319.33  Aligned_cols=257  Identities=26%  Similarity=0.320  Sum_probs=211.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHH-----------------------------
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAA-----------------------------   64 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~-----------------------------   64 (458)
                      ..++||.||..|+.++|+.|+++.        +......|..|.||||+|+                             
T Consensus        41 ~~t~LH~A~~~g~~e~V~~ll~~~--------~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  112 (682)
T PHA02876         41 PFTAIHQALQLRQIDIVEEIIQQN--------PELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIIL  112 (682)
T ss_pred             cchHHHHHHHHHhhhHHHHHHHhC--------cccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHH
Confidence            478999999999999999999983        3334556667788888555                             


Q ss_pred             -----------------------------------------HcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683           65 -----------------------------------------REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT  103 (458)
Q Consensus        65 -----------------------------------------~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  103 (458)
                                                               ..|+.+++++|++. |++++.+|..|.||||+|+..|+.
T Consensus       113 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~-Gadvn~~d~~G~TpLh~Aa~~G~~  191 (682)
T PHA02876        113 NKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG-GADVNAKDIYCITPIHYAAERGNA  191 (682)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCH
Confidence                                                     55778899999987 999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-----------------------------CCCCCCC
Q 012683          104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-----------------------------EVDSESD  154 (458)
Q Consensus       104 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-----------------------------~~~~~~~  154 (458)
                      ++|++|+++|++++..+..|.||||+|+..++.+++++|++.+.                             +++..+.
T Consensus       192 ~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~  271 (682)
T PHA02876        192 KMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD  271 (682)
T ss_pred             HHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            99999999999999888889999999998888887776665443                             3443333


Q ss_pred             -CCcHHHHHHhCCCH-HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683          155 -AGTPLIWAAGHGQQ-EAVKVLLEHHANPNAETEDNITPLLSAVAAG-SLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (458)
Q Consensus       155 -~~t~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (458)
                       +.||||+|+..++. +++++|++.|++++..+.+|.||||+|+..| +.++++.|+..|++++.. ..|.||||+|+..
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence             34899999988886 5888888889988888888999999998888 588888888888888877 6688888888875


Q ss_pred             -CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          231 -GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       231 -~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                       ++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++++...
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~  401 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI  401 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence             4678888888888888888888888888888888888888888877653

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=294.12  Aligned_cols=281  Identities=16%  Similarity=0.170  Sum_probs=239.0

Q ss_pred             HHHHHHHH--HcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           15 VQQFLNAA--CTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        15 ~~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      ...||.++  ..++.++|+.|++.    |.+     .+.+|.+|.||||+|+..|+.+++++|+++ |++++.+|..|.|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~----Gad-----vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~T  107 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHR----GYS-----PNETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKT  107 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHC----cCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCC
Confidence            34566655  44577899999986    333     356788999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcC--CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--
Q 012683           93 PLLHAARQG--HTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--  166 (458)
Q Consensus        93 ~L~~A~~~g--~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--  166 (458)
                      |||+|+..+  ..+++++|+++|++++. .+..|.|||| |+..++.+++++|++.|++++..+..+ ||||+|+..+  
T Consensus       108 pLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~  186 (446)
T PHA02946        108 PLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNP  186 (446)
T ss_pred             HHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCC
Confidence            999999876  48999999999999985 6889999997 666799999999999999998877666 9999988755  


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc-HHHHHHHHHc
Q 012683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAG--SLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKA  242 (458)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~iv~~Ll~~  242 (458)
                      +.+++++|+++|++++..|.+|.||||+|+..|  +.+++++|++ |++++.. ..|.||||+|+..++ .+++++|+++
T Consensus       187 ~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        187 KASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence            468999999999999999999999999999986  7899999985 8999988 789999999999988 5899999999


Q ss_pred             CCCCCCC---------------------CCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccch
Q 012683          243 GADPNVT---------------------DEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQ  301 (458)
Q Consensus       243 g~~~~~~---------------------~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (458)
                      |++++.+                     +..|+||||+|+.+|+.++|++|++++        ....+  ++..+...+.
T Consensus       266 g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~--------~~~~t--~L~~A~~~~~  335 (446)
T PHA02946        266 SNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND--------IICED--AMYYAVLSEY  335 (446)
T ss_pred             CCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC--------Ccccc--HHHHHHHhCH
Confidence            8766321                     235779999999999999999999864        25555  4445555677


Q ss_pred             hHHhhhhhcCCCCCCC
Q 012683          302 LEETRNLKENNAPKDK  317 (458)
Q Consensus       302 ~~~~~~l~~~~~~~~~  317 (458)
                      .+.+..++..++..+.
T Consensus       336 ~~~v~~Ll~~ga~~n~  351 (446)
T PHA02946        336 ETMVDYLLFNHFSVDS  351 (446)
T ss_pred             HHHHHHHHHCCCCCCC
Confidence            8888899988888764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-36  Score=302.00  Aligned_cols=246  Identities=19%  Similarity=0.249  Sum_probs=203.3

Q ss_pred             ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCC--HHHHHHHHHhCCCCCCCCCCCCCcHHHHH------
Q 012683           26 NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK--TDVCKYLLEELKLDVDTQDEDGETPLLHA------   97 (458)
Q Consensus        26 ~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~g~t~L~~A------   97 (458)
                      +.++++.|++.    |+++     +..|..|.||||+|+..|+  .++|++|++. |++++.++..|+||||.|      
T Consensus       191 ~~eIVklLLe~----GADV-----N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai~~a~n  260 (764)
T PHA02716        191 DIDILEWLCNN----GVNV-----NLQNNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYIINIDN  260 (764)
T ss_pred             CHHHHHHHHHc----CCCC-----CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhhhc
Confidence            45777777765    4443     5678899999999999995  4899999987 999999999999999965      


Q ss_pred             -------------------------------HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHh
Q 012683           98 -------------------------------ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG--IGNIELLTYLLS  144 (458)
Q Consensus        98 -------------------------------~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~  144 (458)
                                                     +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|++
T Consensus       261 ~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe  340 (764)
T PHA02716        261 INPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHE  340 (764)
T ss_pred             cCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHH
Confidence                                           34578889999999999999999999999998764  467899999999


Q ss_pred             CCCCCCCCCCCC-cHHHHHHh--------------CCCHHHHHHHHhcCCCCCCCCCCCCcHHHH----HHHcCCHHHHH
Q 012683          145 KGAEVDSESDAG-TPLIWAAG--------------HGQQEAVKVLLEHHANPNAETEDNITPLLS----AVAAGSLTCLD  205 (458)
Q Consensus       145 ~~~~~~~~~~~~-t~l~~A~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~----a~~~~~~~~~~  205 (458)
                      .|++++..+..+ ||||+|+.              .++.+++++|+++|++++..+..|.||||.    |...++.++++
T Consensus       341 ~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvk  420 (764)
T PHA02716        341 YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIID  420 (764)
T ss_pred             cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHH
Confidence            999998777655 99998865              368899999999999999999999999994    23356789999


Q ss_pred             HHHHcCCCc-------------------------------------------------------------ccc-CCCCcH
Q 012683          206 LLIQAGANA-------------------------------------------------------------NIV-AGGATP  223 (458)
Q Consensus       206 ~Ll~~g~~~-------------------------------------------------------------~~~-~~g~t~  223 (458)
                      +|++.|+..                                                             +.. ..|.||
T Consensus       421 lLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TP  500 (764)
T PHA02716        421 CLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTP  500 (764)
T ss_pred             HHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCH
Confidence            998865311                                                             111 358999


Q ss_pred             HHHHHhcCcH-----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-----HHHHhhcCCCCCCCC
Q 012683          224 LHIAADIGST-----EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR-----EAVEILFPLTSEDPS  281 (458)
Q Consensus       224 L~~A~~~~~~-----~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~  281 (458)
                      ||+|+..|+.     +++++|++.|++++.+|..|+||||+|+.+|+.     ++|+.|++.++....
T Consensus       501 Lh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~  568 (764)
T PHA02716        501 LHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI  568 (764)
T ss_pred             HHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence            9999999876     455999999999999999999999999999976     999999987765433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.2e-37  Score=300.98  Aligned_cols=244  Identities=27%  Similarity=0.305  Sum_probs=140.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~   95 (458)
                      ++||.||..|+.++|+.|++.    |+++     +..|.+|.||||+||..|+.++++.|+.. +...+.  ..+.+|++
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~----gadv-----n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-~~~~~~--~~~~~~l~  106 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTR----GHNV-----NQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCSV--FYTLVAIK  106 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHCccHhHHHHHHHH-Hhcccc--ccchhhHH
Confidence            467777777777777777764    2222     44566677777777777777777777765 322222  34566677


Q ss_pred             HHHHcCCHH---------------------------------HHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHH
Q 012683           96 HAARQGHTE---------------------------------TAKYLFEHGANPTIPSNL-GATALHHSAGIGNIELLTY  141 (458)
Q Consensus        96 ~A~~~g~~~---------------------------------~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~  141 (458)
                      .|+..|+.+                                 ++++|+++|++++..+.. |.||||+|+..|+.+++++
T Consensus       107 ~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~  186 (477)
T PHA02878        107 DAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTEL  186 (477)
T ss_pred             HHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHH
Confidence            666665544                                 334444445555555555 5666666666666666666


Q ss_pred             HHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCccccC-
Q 012683          142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA-GSLTCLDLLIQAGANANIVA-  218 (458)
Q Consensus       142 Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~-  218 (458)
                      |++.|++++..+..+ ||||.|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++... 
T Consensus       187 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            666665555444333 566666666666666666666666655555566666665543 45566666666666555542 


Q ss_pred             -CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHhhc
Q 012683          219 -GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG-NREAVEILF  273 (458)
Q Consensus       219 -~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll  273 (458)
                       .|.||||+|  .++.+++++|+++|++++..|..|.||||+|+..+ +.+++++|+
T Consensus       267 ~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li  321 (477)
T PHA02878        267 ILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI  321 (477)
T ss_pred             CCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHH
Confidence             355666665  34555566666666666666666666666655432 344444444

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=294.40  Aligned_cols=237  Identities=21%  Similarity=0.345  Sum_probs=181.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~   95 (458)
                      .+|+.|+..|+.+++++|++.    |.+     .+..+.+|.||||+|+..|+.+++++|++. |++++..+..+.||||
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~----g~~-----~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~   73 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDI----GIN-----PNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELH   73 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHC----CCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHH
Confidence            357888888888888888865    322     234556788888888888888888888876 7777777777888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683           96 HAARQGHTETAKYLFEHGANPT-IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV  173 (458)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~  173 (458)
                      .|+..|+.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~  153 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL  153 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            8888888888888888776553 345667888888888888888888888888877665544 88888888888888888


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CCcHHHHHHhcCcHHHHHHHHHcCCCCCCC--
Q 012683          174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGSTEIIKCLLKAGADPNVT--  249 (458)
Q Consensus       174 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~--  249 (458)
                      |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. .. +.||+|+|+..|+.+++++|+++|++++..  
T Consensus       154 Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~  233 (413)
T PHA02875        154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFM  233 (413)
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhh
Confidence            88888888888888888888888888888888888888888766 33 357788888888888888888888887654  


Q ss_pred             -CCCCCcHHHHHHH
Q 012683          250 -DEDGQKPIQVAAA  262 (458)
Q Consensus       250 -~~~g~t~l~~A~~  262 (458)
                       +..|.||+++++.
T Consensus       234 ~~~~~~t~l~~~~~  247 (413)
T PHA02875        234 IEGEECTILDMICN  247 (413)
T ss_pred             cCCCchHHHHHHHh
Confidence             5567788877653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=294.74  Aligned_cols=225  Identities=27%  Similarity=0.356  Sum_probs=211.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      .+++||.|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            57899999999999999999997 99999999999999999999999999999999999999988899999999999999


Q ss_pred             HHHHHHHHhCCCCCCCC--CCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683          136 IELLTYLLSKGAEVDSE--SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (458)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~--~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  213 (458)
                      .+++++|++.|......  ..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            99999999999876432  2345999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 012683          214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ-KPIQVAAARGNREAVEILFPLTSEDPS  281 (458)
Q Consensus       214 ~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~Ll~~~~~~~~  281 (458)
                      ++.. ..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|+++|.+...
T Consensus       161 ~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            9987 6799999999999999999999999999999998875 789999999999999999999887543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=273.33  Aligned_cols=209  Identities=18%  Similarity=0.212  Sum_probs=190.9

Q ss_pred             cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683           66 EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (458)
Q Consensus        66 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (458)
                      .++.+++++|+++ ++  +..|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.
T Consensus         9 ~~~~~~~~~Lis~-~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSK-DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhC-CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence            3668899999996 65  4678899999999999999999999999999988764  78999999999999999999999


Q ss_pred             CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcH
Q 012683          146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI-TPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP  223 (458)
Q Consensus       146 ~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~  223 (458)
                      |++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|+ ||||+|+..|+.+++++|++++++......|.||
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~Tp  163 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC  163 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccH
Confidence            99998777655 999999999999999999999999999888885 8999999999999999999998654322358999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHHcCCHHHHHhhcCCCCCC
Q 012683          224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP-IQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      ||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+.+|+.++|++|+++|...
T Consensus       164 Lh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        164 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999999999999999999999999987 99999999999999999998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=305.35  Aligned_cols=253  Identities=26%  Similarity=0.310  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~   93 (458)
                      ..+.++.|+..|+.++++.|++.    |+++     +..|..|.||||+|+..|+.++|++|++. |++++..+..|.||
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~----Gadv-----n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~  214 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEG----GADV-----NAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSV  214 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhC----CCCC-----CCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCH
Confidence            34567777788888888888765    3332     45677788888888888888888888876 77777666666666


Q ss_pred             HHHHHHcCCHHHHHHHHH-----------------------------cCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHH
Q 012683           94 LLHAARQGHTETAKYLFE-----------------------------HGANPTIPSNLGATALHHSAGIGNI-ELLTYLL  143 (458)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll  143 (458)
                      ||.|+..|+.+++++|++                             .|++++..+..|.||||+|+..++. +++++|+
T Consensus       215 L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl  294 (682)
T PHA02876        215 LECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLL  294 (682)
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence            666666666555544433                             3334444555566666666666654 3566666


Q ss_pred             hCCCCCCCCCCCC-cHHHHHHhCC-CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc-CC
Q 012683          144 SKGAEVDSESDAG-TPLIWAAGHG-QQEAVKVLLEHHANPNAETEDNITPLLSAVAA-GSLTCLDLLIQAGANANIV-AG  219 (458)
Q Consensus       144 ~~~~~~~~~~~~~-t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~-~~  219 (458)
                      +.|++++..+..+ ||||+|+..| ..+++++|+..|++++..+..|.||||+|+.. ++.++++.|++.|++++.. ..
T Consensus       295 ~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~  374 (682)
T PHA02876        295 ERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYC  374 (682)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCC
Confidence            6666665544433 6666666655 35555555555555555555555555555553 3455555555555555554 44


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCCC
Q 012683          220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPLT  276 (458)
Q Consensus       220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~  276 (458)
                      |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|++.+
T Consensus       375 G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g  432 (682)
T PHA02876        375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG  432 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence            5555555555555555555555555555555555555555544333 33455555444

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=292.91  Aligned_cols=269  Identities=22%  Similarity=0.252  Sum_probs=217.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 012683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (458)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~   96 (458)
                      +|+.++...+.+.+...++.+...+     ...+..+..+.||||+|+..|+.++|++|+++ |++++..+..|.||||+
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~-----~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~   76 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTE-----NYSTSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHI   76 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhh-----hhcCcccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHH
Confidence            5788888888776777776643321     12233456789999999999999999999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH---------------------------------HHHHHH
Q 012683           97 AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE---------------------------------LLTYLL  143 (458)
Q Consensus        97 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~---------------------------------~~~~Ll  143 (458)
                      ||..|+.++++.|++.+.....  ..+.++++.|+..++.+                                 ++++|+
T Consensus        77 A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll  154 (477)
T PHA02878         77 ICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLL  154 (477)
T ss_pred             HHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHH
Confidence            9999999999999998766554  46788999998887655                                 555666


Q ss_pred             hCCCCCCCCCCC--CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCC
Q 012683          144 SKGAEVDSESDA--GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG  220 (458)
Q Consensus       144 ~~~~~~~~~~~~--~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g  220 (458)
                      +.|++++..+..  .||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.|++++.. ..|
T Consensus       155 ~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g  234 (477)
T PHA02878        155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCG  234 (477)
T ss_pred             HcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Confidence            667777665544  48999999999999999999999998888888999999999999999999999999988877 678


Q ss_pred             CcHHHHHHhc-CcHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHh
Q 012683          221 ATPLHIAADI-GSTEIIKCLLKAGADPNVTDE-DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQS  296 (458)
Q Consensus       221 ~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  296 (458)
                      .||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|.+. +..+..+.+++.++..
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n~~d~~g~TpL~~A~~  309 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADI-NSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence            8999998875 688999999999999888876 789999998  57788899999887643 4455566666666543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=289.80  Aligned_cols=262  Identities=31%  Similarity=0.399  Sum_probs=219.5

Q ss_pred             hhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC
Q 012683            8 ALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD   87 (458)
Q Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~   87 (458)
                      .+.-..+..++|.|+..|+...++.|++..         ...+..|.+|.||||.||..++.+..+.|++. |+++...|
T Consensus       115 ~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~---------~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~-~a~~~K~~  184 (929)
T KOG0510|consen  115 PLRNLNKNAPLHLAADSGNYSCLKLLLDYG---------ADVNLEDENGFTPLHLAARKNKVEAKKELINK-GADPCKSD  184 (929)
T ss_pred             ChhhhhccCchhhccccchHHHHHHHHHhc---------CCccccccCCCchhhHHHhcChHHHHHHHHhc-CCCCCccc
Confidence            344456677888888888888888888762         22467788889999999999999977777776 88888888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-----------
Q 012683           88 EDGETPLLHAARQGHTETAKYLFE-----HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-----------  151 (458)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-----------  151 (458)
                      .+|.+|+|.|+..|..++.+.++.     ++..++..+..+.||||.|+..|++++++.+++.|.....           
T Consensus       185 ~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~ke  264 (929)
T KOG0510|consen  185 IDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKE  264 (929)
T ss_pred             CcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHH
Confidence            899999999999999999998887     6677888888899999999999999999999988765431           


Q ss_pred             -----CCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccc--CCCCcH
Q 012683          152 -----ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV--AGGATP  223 (458)
Q Consensus       152 -----~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~--~~g~t~  223 (458)
                           ++.+.||||+|++.|++++++.|+..|++++.++.++.||||.|+..|++.+++.|++ .|..+-..  ..|.||
T Consensus       265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tp  344 (929)
T KOG0510|consen  265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTP  344 (929)
T ss_pred             HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCc
Confidence                 2234499999999999999999999999999999999999999999999999999998 44322222  458999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          224 LHIAADIGSTEIIKCLLKAGADPN---VTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      ||+|+..||..++++|++.|+...   ..|.+|.||||.|+.+|+..+|++|+.+|.+.
T Consensus       345 LHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  345 LHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             hhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            999999999999999999998876   56999999999999999999999999998876

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=287.57  Aligned_cols=295  Identities=26%  Similarity=0.345  Sum_probs=262.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .+..+||.|+...-.+.++.|++.    |++     ....+.++.+|+|+|+..|.+++++.|++. +++++..+..|.|
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~----gad-----~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~de~~~T  156 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSY----GAD-----TPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLEDENGFT  156 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhc----CCC-----CChhhhhccCchhhccccchHHHHHHHHHh-cCCccccccCCCc
Confidence            345779999999999999999986    443     356778899999999999999999999998 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCC-cHHHHHHhCC
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS-----KGAEVDSESDAG-TPLIWAAGHG  166 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~~-t~l~~A~~~~  166 (458)
                      |||+||..++.+..+.|++.|+++...|.+|.+|+|.|+++|..++.+.++.     ++..++..+.++ +|||.|+..|
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g  236 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGG  236 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcC
Confidence            9999999999998899999999999999999999999999999999999998     566677666655 9999999999


Q ss_pred             CHHHHHHHHhcCCC---------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683          167 QQEAVKVLLEHHAN---------------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (458)
Q Consensus       167 ~~~~~~~Ll~~~~~---------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (458)
                      ++++++.+++.|..               ++..|.+|.||||+|++.|++++++.|+..|++++.. .++.||||.|+..
T Consensus       237 ~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~y  316 (929)
T KOG0510|consen  237 DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIY  316 (929)
T ss_pred             CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHc
Confidence            99999999998754               3557889999999999999999999999999999988 7899999999999


Q ss_pred             CcHHHHHHHHH-cCC-CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhh
Q 012683          231 GSTEIIKCLLK-AGA-DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL  308 (458)
Q Consensus       231 ~~~~iv~~Ll~-~g~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  308 (458)
                      |+++.|+-||+ .|. ..+..|-.|.||||+|+..||..++++|+..|+....-...+.+|.+.+.-+........++.+
T Consensus       317 g~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~L  396 (929)
T KOG0510|consen  317 GRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKL  396 (929)
T ss_pred             ccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHH
Confidence            99999999998 443 4688899999999999999999999999999987664333466777777777777888889999


Q ss_pred             hcCCCCCCC
Q 012683          309 KENNAPKDK  317 (458)
Q Consensus       309 ~~~~~~~~~  317 (458)
                      +..|+..+.
T Consensus       397 i~~Ga~I~~  405 (929)
T KOG0510|consen  397 ISHGADIGV  405 (929)
T ss_pred             HHcCCceee
Confidence            999888743

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.4e-37  Score=239.81  Aligned_cols=206  Identities=32%  Similarity=0.460  Sum_probs=172.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHc
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      +.++.+.+|...-..-|+.+++..+..++.++. +|.||||+||..|+.+|+++|+ +.+..++.+|..|+||||+|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            456777777777777777777764545666544 8888888888888888888888 45677778888888888888888


Q ss_pred             CCHHHHHHHHhC-CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683          134 GNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (458)
Q Consensus       134 ~~~~~~~~Ll~~-~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  211 (458)
                      |+.++|+.|+.+ |++++...+++ |+||+|+..|..+|+++|+++|+.++..|..|.||||-|+..|+++++++|+..|
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            888888888887 88888777766 8899999899999999999999888888999999999999999999999999999


Q ss_pred             CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683          212 ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA  262 (458)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~  262 (458)
                      +.+|.. +.|+||||.|.--|+.++..+|+++|++++..|+.| ||+..|+-
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            888887 779999999977789999999999999999999988 99887763

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-36  Score=237.58  Aligned_cols=207  Identities=30%  Similarity=0.406  Sum_probs=184.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 012683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLH   96 (458)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~   96 (458)
                      ..+.++...-..-++++++..+       ..+....|.+|+||||+||+.|+.+++.+|++..+..+|.+|..||||||+
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~-------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi   78 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDP-------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI   78 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcCh-------hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhh
Confidence            3555666666677777776521       234445566999999999999999999999987788999999999999999


Q ss_pred             HHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683           97 AARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (458)
Q Consensus        97 A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L  174 (458)
                      |+..|+.++|+.|+.+ |++++..+..|.||||+|+..|.++++.+|++.|+.++..+..+ ||||.|+.-|.++++++|
T Consensus        79 a~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   79 AASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHH
Confidence            9999999999999998 99999999999999999999999999999999999999888777 999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhc
Q 012683          175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADI  230 (458)
Q Consensus       175 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~  230 (458)
                      +..|+.+|.+|..|+||||.|...|+.++...|+++|+++...++..|++-.|+-.
T Consensus       159 i~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~t~~~~a~~~  214 (226)
T KOG4412|consen  159 ISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEGTALRIACNE  214 (226)
T ss_pred             HhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccCchHHHHHHH
Confidence            99999999999999999999999999999999999999999884444998877643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-35  Score=289.89  Aligned_cols=249  Identities=20%  Similarity=0.273  Sum_probs=150.8

Q ss_pred             HHHHHHHHcC--ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC------CHHHHHHHHHhCCCCCCCCC
Q 012683           16 QQFLNAACTG--NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG------KTDVCKYLLEELKLDVDTQD   87 (458)
Q Consensus        16 ~~l~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g------~~~~v~~ll~~~~~~~~~~~   87 (458)
                      ++|+.++..+  +.++|+.|++.    |+++.     ..+ .+.||||.|+..+      +.+++++|++. |++++.++
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~----GAdvn-----~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d  105 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDN----GADVN-----YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF-GADINLKT  105 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHc----CCCcc-----CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC-CCCCCCCC
Confidence            4444443332  45666666654    33331     122 3456666665433      34566666665 66666666


Q ss_pred             CCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCC-CC-CCCcHH
Q 012683           88 EDGETPLLHAARQ---GHTETAKYLFEHGANP-TIPSNLGATALHHSAGI--GNIELLTYLLSKGAEVDS-ES-DAGTPL  159 (458)
Q Consensus        88 ~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~-~~-~~~t~l  159 (458)
                      ..|.||||.|+..   |+.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|++.|++++. .+ .+.|||
T Consensus       106 ~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL  185 (494)
T PHA02989        106 FNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPM  185 (494)
T ss_pred             CCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChH
Confidence            6666666665543   4566666666666666 56666666666665543  456666666666666554 22 223666


Q ss_pred             HHHHhCC----CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC------CHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683          160 IWAAGHG----QQEAVKVLLEHHANPNAETEDNITPLLSAVAAG------SLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (458)
Q Consensus       160 ~~A~~~~----~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~------~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (458)
                      |.|+..+    +.+++++|+++|++++..+..+.|++|.++..+      ..+++++|+. |++++.. ..|.||||+|+
T Consensus       186 ~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa  264 (494)
T PHA02989        186 NIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISA  264 (494)
T ss_pred             HHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHH
Confidence            6655443    566666666666666666666666666544332      3445554433 4666655 55777777777


Q ss_pred             hcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       229 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+
T Consensus       265 ~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        265 KVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             HhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            777777777777777777777777777777777777777777777654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.8e-35  Score=288.87  Aligned_cols=254  Identities=20%  Similarity=0.267  Sum_probs=220.1

Q ss_pred             HHHHHHHH--cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc-----CCHHHHHHHHHhCCCCCCCCCC
Q 012683           16 QQFLNAAC--TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE-----GKTDVCKYLLEELKLDVDTQDE   88 (458)
Q Consensus        16 ~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~   88 (458)
                      +.++.+..  .++.++|+.|++.    |+++     +..+..|.||||.|+..     ++.+++++|++. |++++..|.
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~----Gadv-----n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~  107 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINL----GANV-----NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNS  107 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHC----CCCC-----CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCC
Confidence            33443443  4578999999987    4443     56788999999998864     678999999997 999999999


Q ss_pred             CCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCCCC--CCcHHH
Q 012683           89 DGETPLLHAARQG---HTETAKYLFEHGANPTIPSNLGATALHHSAGIGN---IELLTYLLSKGAEVDSESD--AGTPLI  160 (458)
Q Consensus        89 ~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~--~~t~l~  160 (458)
                      .|.||||+|+.++   +.+++++|+++|++++..|..|.||||+|+..++   .+++++|++.|++++..+.  +.||||
T Consensus       108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh  187 (489)
T PHA02798        108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH  187 (489)
T ss_pred             CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHH
Confidence            9999999999986   7899999999999999999999999999999988   9999999999999987643  349999


Q ss_pred             HHHhC----CCHHHHHHHHhcCCCCCCCCCCCCcHHH-------HHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683          161 WAAGH----GQQEAVKVLLEHHANPNAETEDNITPLL-------SAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (458)
Q Consensus       161 ~A~~~----~~~~~~~~Ll~~~~~~~~~~~~~~t~l~-------~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (458)
                      .++..    ++.+++++|+++|++++..+..+.++++       .+...++.+++.+|+. |++++.. ..|.||||+|+
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~  266 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSV  266 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHH
Confidence            88764    4899999999999999998888888876       2345567788888765 6899987 67999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 012683          229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP  280 (458)
Q Consensus       229 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (458)
                      ..|+.+++++|+++|++++.+|..|+||||+|+.+++.++++.|+++++...
T Consensus       267 ~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        267 SHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            9999999999999999999999999999999999999999999998876543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-34  Score=281.15  Aligned_cols=280  Identities=21%  Similarity=0.262  Sum_probs=230.5

Q ss_pred             HHHHHH---cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc--CCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           18 FLNAAC---TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE--GKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        18 l~~A~~---~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      ||.-+.   ..+.++|+.|++.    |+++     +.. ..|.||||.++..  ++.++|++|++. |++++.++ .+.|
T Consensus         4 l~~y~~~~~~~~~~~v~~LL~~----Gadv-----N~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~t   71 (494)
T PHA02989          4 LYEYILYSDTVDKNALEFLLRT----GFDV-----NEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIET   71 (494)
T ss_pred             HHHHHHcCCcCcHHHHHHHHHc----CCCc-----ccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCC
Confidence            444444   5789999999987    4443     333 4688998876654  378999999998 99999886 5799


Q ss_pred             HHHHHHHcC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC-CCCCCCC-cHHHH
Q 012683           93 PLLHAARQG------HTETAKYLFEHGANPTIPSNLGATALHHSAGI---GNIELLTYLLSKGAEV-DSESDAG-TPLIW  161 (458)
Q Consensus        93 ~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~-~~~~~~~-t~l~~  161 (458)
                      |||.|+.++      +.+++++|+++|++++.++..|.||||.|+..   ++.+++++|+++|+++ +..+..+ ||||+
T Consensus        72 pL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~  151 (494)
T PHA02989         72 PLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHM  151 (494)
T ss_pred             cHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHH
Confidence            999998754      57899999999999999999999999988765   6899999999999999 6665544 99999


Q ss_pred             HHhC--CCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc---
Q 012683          162 AAGH--GQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAG----SLTCLDLLIQAGANANIV-AGGATPLHIAADI---  230 (458)
Q Consensus       162 A~~~--~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~---  230 (458)
                      |+..  ++.+++++|+++|++++. .+..|.||||.|+..+    +.+++++|+++|++++.. ..+.|+||.++..   
T Consensus       152 a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~  231 (494)
T PHA02989        152 YLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKI  231 (494)
T ss_pred             HHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchh
Confidence            8764  689999999999999988 6889999999987764    899999999999999987 5689999987764   


Q ss_pred             ---CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhh
Q 012683          231 ---GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRN  307 (458)
Q Consensus       231 ---~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (458)
                         +..+++++|+. |++++.+|..|+||||+|+..|+.+++++|++.|++ .+..+..+.+++.++.  .....+.+..
T Consensus       232 ~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~--~~~~~~iv~~  307 (494)
T PHA02989        232 LSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAI--KHGNIDMLNR  307 (494)
T ss_pred             hcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHH--HcCCHHHHHH
Confidence               45788887765 699999999999999999999999999999999874 3444555566665554  4456777788


Q ss_pred             hhcCCC
Q 012683          308 LKENNA  313 (458)
Q Consensus       308 l~~~~~  313 (458)
                      +++.+.
T Consensus       308 LL~~~p  313 (494)
T PHA02989        308 ILQLKP  313 (494)
T ss_pred             HHhcCC
Confidence            887653

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-32  Score=270.86  Aligned_cols=290  Identities=17%  Similarity=0.173  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHc---CChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCC---------------------
Q 012683           13 ERVQQFLNAACT---GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGK---------------------   68 (458)
Q Consensus        13 ~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~---------------------   68 (458)
                      .+.++||.|+..   |+.++|+.|++.    |+++     +..+..|.||||+|+..|+                     
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~----ga~v-----~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~  101 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDS----GTNP-----LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN  101 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHC----CCCc-----cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC
Confidence            346889997655   889999999976    4333     3556677777777776554                     


Q ss_pred             --------------HHHHHHHHHhCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC---CC------
Q 012683           69 --------------TDVCKYLLEELKLDVDTQDEDGETPLLHAA--RQGHTETAKYLFEHGANPTIPSN---LG------  123 (458)
Q Consensus        69 --------------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~---~g------  123 (458)
                                    .++|++|+++ |++++.+|..|.||||.|+  ..|+.+++++|+++|++++..+.   .|      
T Consensus       102 ~~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        102 DFNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             CcchHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence                          4555555555 6666666666667766433  35666777777776666654332   22      


Q ss_pred             -----CcHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH--HHHHHHHhcCCCCC--
Q 012683          124 -----ATALHHSAG-----------IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ--EAVKVLLEHHANPN--  182 (458)
Q Consensus       124 -----~t~L~~A~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~--~~~~~Ll~~~~~~~--  182 (458)
                           .||||+|+.           .++.+++++|++.|++++..+..+ ||||+|+.+|+.  +++++|++ |++.+  
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~  259 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAY  259 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccc
Confidence                 366766654           345666777777666666654444 667776666653  56666653 44332  


Q ss_pred             --CCCCCCCcHHHHHH----------------------------------------------------------------
Q 012683          183 --AETEDNITPLLSAV----------------------------------------------------------------  196 (458)
Q Consensus       183 --~~~~~~~t~l~~a~----------------------------------------------------------------  196 (458)
                        ..+..+.+++++|+                                                                
T Consensus       260 ~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (661)
T PHA02917        260 SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYM  339 (661)
T ss_pred             ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHH
Confidence              11122222222222                                                                


Q ss_pred             HcCC--HHHHHHHHHcCCCcccc-------------------------------CCCCcHHHHHHhcC------------
Q 012683          197 AAGS--LTCLDLLIQAGANANIV-------------------------------AGGATPLHIAADIG------------  231 (458)
Q Consensus       197 ~~~~--~~~~~~Ll~~g~~~~~~-------------------------------~~g~t~L~~A~~~~------------  231 (458)
                      ..|.  .++++.|++.|++++..                               ++|.||||.|++.+            
T Consensus       340 ~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~  419 (661)
T PHA02917        340 TFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYK  419 (661)
T ss_pred             HcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhh
Confidence            1222  23555555555554322                               12677777766432            


Q ss_pred             -----------cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccc
Q 012683          232 -----------STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK  300 (458)
Q Consensus       232 -----------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (458)
                                 ..+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|.+. +..+..+.+++.++... ..
T Consensus       420 ~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdi-n~~d~~G~T~L~~A~~~-~~  497 (661)
T PHA02917        420 KGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDV-NIRSNNGYTCIAIAINE-SR  497 (661)
T ss_pred             hccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHh-CC
Confidence                       245667777777777777777777777777777777777777766543 23333344444443321 23


Q ss_pred             hhHHhhhhhcCCCCC
Q 012683          301 QLEETRNLKENNAPK  315 (458)
Q Consensus       301 ~~~~~~~l~~~~~~~  315 (458)
                      ..+.+..++..++..
T Consensus       498 ~~~iv~~LL~~ga~i  512 (661)
T PHA02917        498 NIELLKMLLCHKPTL  512 (661)
T ss_pred             CHHHHHHHHHcCCCh
Confidence            345555566555444

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-32  Score=266.46  Aligned_cols=285  Identities=20%  Similarity=0.216  Sum_probs=231.5

Q ss_pred             HHHHHHHHcC---ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHH--cCCHHHHHHHHHhCCCCCCCCCCCC
Q 012683           16 QQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR--EGKTDVCKYLLEELKLDVDTQDEDG   90 (458)
Q Consensus        16 ~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g   90 (458)
                      ..|+.-+...   +++.|+.|+....       +  .+.  ..+.|+++.+..  .++.++|++|++. |++++..+..|
T Consensus         4 ~~l~~y~~~~~~~~~~~v~~ll~~~~-------~--~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~d~~g   71 (489)
T PHA02798          4 DNLYNYITFSDNVKLSTVKLLIKSCN-------P--NEI--VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGLDNEY   71 (489)
T ss_pred             hhhHHHeeecCcccHHHHHHHHhcCC-------h--hhh--cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCCCCCC
Confidence            3455555543   3678999986411       0  111  346677664443  4589999999998 99999999999


Q ss_pred             CcHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683           91 ETPLLHAARQ-----GHTETAKYLFEHGANPTIPSNLGATALHHSAGIG---NIELLTYLLSKGAEVDSESDAG-TPLIW  161 (458)
Q Consensus        91 ~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~-t~l~~  161 (458)
                      .||||.|+.+     ++.+++++|+++|++++..|..|.||||+|+..+   +.+++++|+++|++++..+..+ ||||+
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~  151 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV  151 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHH
Confidence            9999999875     6789999999999999999999999999999875   7899999999999999887666 99999


Q ss_pred             HHhCCC---HHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHHcCCCcccc-CCCCcHHH-------
Q 012683          162 AAGHGQ---QEAVKVLLEHHANPNAET-EDNITPLLSAVAA----GSLTCLDLLIQAGANANIV-AGGATPLH-------  225 (458)
Q Consensus       162 A~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~Ll~~g~~~~~~-~~g~t~L~-------  225 (458)
                      |+..++   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|++++.. ..|.++++       
T Consensus       152 a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~  231 (489)
T PHA02798        152 YLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLL  231 (489)
T ss_pred             HHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHH
Confidence            999988   999999999999999874 5789999998765    4899999999999999986 56778766       


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683          226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEET  305 (458)
Q Consensus       226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (458)
                      .+...++.+++++|+. |++++.+|..|+||||+|+..|+.+++++|++.|++. +..+..+.+++.++  ......+.+
T Consensus       232 ~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi-n~~d~~G~TpL~~A--~~~~~~~iv  307 (489)
T PHA02798        232 YDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDI-NIITELGNTCLFTA--FENESKFIF  307 (489)
T ss_pred             hhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcc-cccCCCCCcHHHHH--HHcCcHHHH
Confidence            2445678899998776 5999999999999999999999999999999998753 44445555555544  445667777


Q ss_pred             hhhhcCCCCCC
Q 012683          306 RNLKENNAPKD  316 (458)
Q Consensus       306 ~~l~~~~~~~~  316 (458)
                      ..+++.+++..
T Consensus       308 ~~lL~~~~~~~  318 (489)
T PHA02798        308 NSILNKKPNKN  318 (489)
T ss_pred             HHHHccCCCHH
Confidence            77887776543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-32  Score=246.58  Aligned_cols=212  Identities=35%  Similarity=0.512  Sum_probs=182.3

Q ss_pred             HHHHcCCHHHHHHHHHhCC-CC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCC--------CCCCCCcHHH
Q 012683           62 FAAREGKTDVCKYLLEELK-LD---VDTQDEDGETPLLHAARQGHTETAKYLFE-HGANPTI--------PSNLGATALH  128 (458)
Q Consensus        62 ~A~~~g~~~~v~~ll~~~~-~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~--------~~~~g~t~L~  128 (458)
                      -|++.|.+..+..|+.... .+   +-....+|.|||.+|+++||.++|++|++ .++++..        ....|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            4566666665555543311 00   11224578899999999999999999998 4555543        2456889999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683          129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (458)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  207 (458)
                      .|+..||+++|+.|+++|+++|.....+ |||.-||..|+.+++++|+++|+|++..|..|.|+||+|+.+|+.+++++|
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence            9999999999999999999998777666 999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 012683          208 IQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (458)
Q Consensus       208 l~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (458)
                      ++.|+|+|.. ..|+|+||.|++.|+++++++|+++|+.++.-.. |.|||..|+..|+.++|++|++
T Consensus       170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~-GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH-GMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCC-CCchHHHHhhhcchHHHHHHhc
Confidence            9999999988 7899999999999999999999999998876554 9999999999999999999996

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-31  Score=240.90  Aligned_cols=221  Identities=31%  Similarity=0.445  Sum_probs=196.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC--------CC
Q 012683           17 QFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ--------DE   88 (458)
Q Consensus        17 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~--------~~   88 (458)
                      ..+.|++.|++..+..|+-.-.  ...+..  .--...+|.|||-+||++||.++|++|++++++++...        ..
T Consensus         7 ~~~naa~~g~l~~l~~ll~~~s--~~ei~~--l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~I   82 (615)
T KOG0508|consen    7 VVINAARDGKLQLLAKLLINSS--NEEIIS--LIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETI   82 (615)
T ss_pred             HHHHHhhhhhHHHHHHHHhCCc--hHHHHH--HhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCccc
Confidence            3458999999998888875311  111111  11135678899999999999999999999888776543        35


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~  167 (458)
                      .|.+||-.|+..||.++|+.|+++|+++|.......|||.-||.-|+++++++|+++|++++..+..+ |.|++|+..|+
T Consensus        83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH  162 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence            78899999999999999999999999999998889999999999999999999999999999888777 99999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                      .+|+++|++.|+|+|.++..|+|+||.++..|+++++++|+.+|+.+.....|.|||..|+..|+.++|+.|+.
T Consensus       163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999997

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-31  Score=258.90  Aligned_cols=295  Identities=15%  Similarity=0.163  Sum_probs=232.3

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcC--CHHHHHHHHHhCCC--CCCC
Q 012683           13 ERVQQFLNAACTG---NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREG--KTDVCKYLLEELKL--DVDT   85 (458)
Q Consensus        13 ~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~ll~~~~~--~~~~   85 (458)
                      .+.++||.|+..|   +.++|+.|++.    |+++     +.+|..|.||||+|+..|  +.++|++|++. |+  +++.
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~----GAdi-----n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~-~~~~~~~~  109 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSR----GVER-----LCRNNEGLTPLGVYSKRKYVKSQIVHLLISS-YSNASNEL  109 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhC----CCCC-----cccCCCCCChHHHHHHcCCCcHHHHHHHHhc-CCCCCccc
Confidence            3678999999997   59999999976    6554     578899999999999977  79999999997 55  4477


Q ss_pred             CCCCCCcHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCC-----CCCcHHHHHHHcCCHHHHHHHHhCCCCCC-------
Q 012683           86 QDEDGETPLLHAAR--QGHTETAKYLFE-HGANPTIPSN-----LGATALHHSAGIGNIELLTYLLSKGAEVD-------  150 (458)
Q Consensus        86 ~~~~g~t~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~-----~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-------  150 (458)
                      .+..+.+|||.++.  +++.++|++|++ .+++++....     .|.+|++++...++++++++|+++|++++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            77779999999999  899999999996 6788776532     78999999999999999999999999985       


Q ss_pred             -CCCCCC-cHHHHH------HhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHH-----------
Q 012683          151 -SESDAG-TPLIWA------AGHGQQEAVKVLLEHHANPNAETEDNITPLLS--AVAAGSLTCLDLLIQ-----------  209 (458)
Q Consensus       151 -~~~~~~-t~l~~A------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~--a~~~~~~~~~~~Ll~-----------  209 (458)
                       .....+ |.||+.      ..+++.+++++|+++|+++|.+|.+|.||||+  +...|+.+++++|++           
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~  269 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDI  269 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccc
Confidence             112223 445543      34578999999999999999999999999995  555677999999999           


Q ss_pred             ---------------------cCCCccc--------------------c-CCCCc---------------------HHHH
Q 012683          210 ---------------------AGANANI--------------------V-AGGAT---------------------PLHI  226 (458)
Q Consensus       210 ---------------------~g~~~~~--------------------~-~~g~t---------------------~L~~  226 (458)
                                           +|+|...                    . ..|.+                     .||.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~  349 (672)
T PHA02730        270 SQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLIN  349 (672)
T ss_pred             cchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHH
Confidence                                 7888866                    1 23433                     6676


Q ss_pred             HHhcC---cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC----HHHHHhhcCCCCC-CCCCCCcchhhHHHH-HHhh
Q 012683          227 AADIG---STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN----REAVEILFPLTSE-DPSIPKWTVDGILEY-MQSE  297 (458)
Q Consensus       227 A~~~~---~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~-~~~~  297 (458)
                      -...+   +.+++++|+++|++++.. ..|+||||+|+..++    .+++++|+++|+. +.+..+..+.+++.. ..+.
T Consensus       350 Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~  428 (672)
T PHA02730        350 YLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR  428 (672)
T ss_pred             HHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence            66655   689999999999999986 799999999998875    8999999999874 445555555555532 1111


Q ss_pred             -cc--------chhHHhhhhhcCCCCCCCC
Q 012683          298 -SG--------KQLEETRNLKENNAPKDKA  318 (458)
Q Consensus       298 -~~--------~~~~~~~~l~~~~~~~~~~  318 (458)
                       .+        ..++.+..++..++.....
T Consensus       429 ~~n~~~~~~e~~~~~ivk~LIs~GADINak  458 (672)
T PHA02730        429 FNNCGYHCYETILIDVFDILSKYMDDIDMI  458 (672)
T ss_pred             hccccccccchhHHHHHHHHHhcccchhcc
Confidence             11        1335578888888776544

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.1e-31  Score=263.05  Aligned_cols=300  Identities=16%  Similarity=0.115  Sum_probs=225.3

Q ss_pred             hHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683           27 LDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT  103 (458)
Q Consensus        27 ~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~  103 (458)
                      ++.|++|+..    +.     ..+..|.+|.||||+|+..   |+.++|++|++. |++++..+..|.||||.|+..|+.
T Consensus        12 ~~~~~~l~~~----~~-----~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~   81 (661)
T PHA02917         12 LDELKQMLRD----RD-----PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHV   81 (661)
T ss_pred             HHHHHHHHhc----cC-----cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCh
Confidence            4667777753    22     2356788999999997555   889999999997 999999999999999999999985


Q ss_pred             ----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH--hCCCHHHHHHHHh
Q 012683          104 ----ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA--GHGQQEAVKVLLE  176 (458)
Q Consensus       104 ----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~--~~~~~~~~~~Ll~  176 (458)
                          ++++.|++.+...+..+  ..++++.|+..++.+++++|+++|++++..+..+ ||||.++  ..|+.+++++|++
T Consensus        82 ~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~  159 (661)
T PHA02917         82 KVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE  159 (661)
T ss_pred             hHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH
Confidence                45678887654444433  2367788999999999999999999999887555 9999654  5789999999999


Q ss_pred             cCCCCCCCCC---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683          177 HHANPNAETE---DN-----------ITPLLSAVA-----------AGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (458)
Q Consensus       177 ~~~~~~~~~~---~~-----------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (458)
                      +|++++..+.   .|           .||||+|+.           .++.+++++|+++|++++.. .+|.||||+|+..
T Consensus       160 ~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~  239 (661)
T PHA02917        160 NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS  239 (661)
T ss_pred             cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc
Confidence            9999986543   34           599999986           46899999999999999988 7899999999999


Q ss_pred             CcH--HHHHHHHHcCCCCC----CCCCCCCcHHHHHHH-------cC--CHHHHHhhcCCCCCCCCC------CCcchhh
Q 012683          231 GST--EIIKCLLKAGADPN----VTDEDGQKPIQVAAA-------RG--NREAVEILFPLTSEDPSI------PKWTVDG  289 (458)
Q Consensus       231 ~~~--~iv~~Ll~~g~~~~----~~~~~g~t~l~~A~~-------~~--~~~~v~~Ll~~~~~~~~~------~~~~~~~  289 (458)
                      |+.  ++|++|++ |++++    ..|..|.+|+++|+.       ++  +.+++++|++.|...+..      .......
T Consensus       240 g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~  318 (661)
T PHA02917        240 SHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKET  318 (661)
T ss_pred             CCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHH
Confidence            985  79999985 87764    466778899999984       22  789999999999753211      1111111


Q ss_pred             ------------HHHH-HHh--hccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHH
Q 012683          290 ------------ILEY-MQS--ESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKA  339 (458)
Q Consensus       290 ------------~~~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (458)
                                  ++.. ...  .....++.++.|++.++.++..+..............++.+..
T Consensus       319 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~  383 (661)
T PHA02917        319 ISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLK  383 (661)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHH
Confidence                        1111 111  1122466899999999998876655443322222334444444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=253.04  Aligned_cols=208  Identities=32%  Similarity=0.441  Sum_probs=196.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSAGIG  134 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~  134 (458)
                      ..+-++.|+++|+++.|+.+++..|..++..|.+|-|+||.|+.+++.+++++|+++|+++|... ..+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45678999999999999999997789999999999999999999999999999999999999887 77899999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (458)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  213 (458)
                      ++.++.+|+++|++++..+..+ +|+|.|+..++.-++-+|+.+|++++.+|.+|+||||+|+.+|....++.|++.|+.
T Consensus       124 ~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  124 HISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             cHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            9999999999999999888777 999999999999999999999999999999999999999999999889999999999


Q ss_pred             cccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683          214 ANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR  263 (458)
Q Consensus       214 ~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~  263 (458)
                      +...  ..|+||||+|+..|+..++.+|++.|++.+.+|.+|.||+++|...
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9887  6799999999999999999977888899999999999999999876

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.8e-31  Score=255.18  Aligned_cols=259  Identities=12%  Similarity=0.115  Sum_probs=203.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC-------CC-CCCCcHHHHHH------HcCCHHHHHHHHHcCCCCCCCC
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDT-------QD-EDGETPLLHAA------RQGHTETAKYLFEHGANPTIPS  120 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-------~~-~~g~t~L~~A~------~~g~~~~v~~Ll~~~~~~~~~~  120 (458)
                      .|.+|++++...++.++|++|++. |++++-       .+ .-+.|.||+.+      .+++.+++++|+++|++++.+|
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~-g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd  232 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKS-ECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRD  232 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHc-CCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCC
Confidence            788999999999999999999998 988851       22 22334566444      4578999999999999999999


Q ss_pred             CCCCcHHHH--HHHcCCHHHHHHHHh--------------------------------CCCCCCC---------------
Q 012683          121 NLGATALHH--SAGIGNIELLTYLLS--------------------------------KGAEVDS---------------  151 (458)
Q Consensus       121 ~~g~t~L~~--A~~~~~~~~~~~Ll~--------------------------------~~~~~~~---------------  151 (458)
                      ..|.||||+  +...++.+++++|++                                +|++...               
T Consensus       233 ~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  312 (672)
T PHA02730        233 EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVM  312 (672)
T ss_pred             CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhh
Confidence            999999995  555677999999999                                5666533               


Q ss_pred             -----CCCCC-c---------------------HHHHHHhCC---CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-
Q 012683          152 -----ESDAG-T---------------------PLIWAAGHG---QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-  200 (458)
Q Consensus       152 -----~~~~~-t---------------------~l~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-  200 (458)
                           .+..+ +                     .|+.-..++   +.+++++|+++|++++.. ..|.||||+|+..++ 
T Consensus       313 ~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn  391 (672)
T PHA02730        313 RSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNN  391 (672)
T ss_pred             hccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCC
Confidence                 11111 2                     455545544   689999999999999985 789999999988875 


Q ss_pred             ---HHHHHHHHHcCC--Ccccc-CCCCcHHHH---HHhcC---------cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683          201 ---LTCLDLLIQAGA--NANIV-AGGATPLHI---AADIG---------STEIIKCLLKAGADPNVTDEDGQKPIQVAAA  262 (458)
Q Consensus       201 ---~~~~~~Ll~~g~--~~~~~-~~g~t~L~~---A~~~~---------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~  262 (458)
                         .+++++|+++|+  +++.. ..|.||||.   |...+         ..+++++|+++|++++.+|..|+||||+|+.
T Consensus       392 ~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~  471 (672)
T PHA02730        392 IVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVD  471 (672)
T ss_pred             cchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHH
Confidence               899999999998  56666 679999984   33332         2367999999999999999999999999999


Q ss_pred             cCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCC
Q 012683          263 RGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPK  315 (458)
Q Consensus       263 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (458)
                      .++.+++++|+++|+.........+.+++.+.........+.+..++..++..
T Consensus       472 ~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        472 VNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             hCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            99999999999998865544433456666665543335577778888777544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.98  E-value=1.7e-32  Score=277.44  Aligned_cols=257  Identities=33%  Similarity=0.458  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~   91 (458)
                      .....+++.|+..|.++.++.++..    +..     .+....+|.||||.|+.+++.++|+.++++ +++++..+..|.
T Consensus       372 ~k~~~pl~la~~~g~~~~v~Lll~~----ga~-----~~~~gk~gvTplh~aa~~~~~~~v~l~l~~-gA~~~~~~~lG~  441 (1143)
T KOG4177|consen  372 EKGFTPLHLAVKSGRVSVVELLLEA----GAD-----PNSAGKNGVTPLHVAAHYGNPRVVKLLLKR-GASPNAKAKLGY  441 (1143)
T ss_pred             ccCCcchhhhcccCchhHHHhhhhc----cCC-----cccCCCCCcceeeehhhccCcceEEEEecc-CCChhhHhhcCC
Confidence            3444555566666666655555544    111     344555666666666666666666666655 666666666666


Q ss_pred             cHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHH
Q 012683           92 TPLLHAARQG-HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE  169 (458)
Q Consensus        92 t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~  169 (458)
                      ||+|+|+..| ..++...+++.|.+++.....|.||||+|...|+.+++..|++.++..+.....+ +++|.+...+...
T Consensus       442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~  521 (1143)
T KOG4177|consen  442 TPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK  521 (1143)
T ss_pred             ChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH
Confidence            6666666666 6666666666666666666667777777777777777777776665554444433 6777777777777


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q 012683          170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNV  248 (458)
Q Consensus       170 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~  248 (458)
                      +++.++++|++++.++..|+||||.|+.+|+.++|++|+++|++++.. +.|+||||.||..|+.+++.+|+++|+++|.
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            777777777777777777777777777777777777777777777776 6677777777777777777777777777777


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          249 TDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       249 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      .|.+|.|||++|+..|+.+++++|+..+..
T Consensus       602 ~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             ccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            777777777777777777777777776665

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=2.8e-32  Score=275.93  Aligned_cols=291  Identities=30%  Similarity=0.422  Sum_probs=255.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCC
Q 012683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG   90 (458)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g   90 (458)
                      .+.+.+++|.+++.|+.+....+.....+         ....+..|.||+|.|+.+|..++++.++.+ |.+++..+..|
T Consensus       338 r~~g~t~lHlaa~~~~~~~~~~l~~~~~~---------~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~gk~g  407 (1143)
T KOG4177|consen  338 RTAGYTPLHLAAKEGQVEVAGALLEHGAQ---------RRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSAGKNG  407 (1143)
T ss_pred             CcCCcccccHhhhhhhHHHHHHhhccccc---------cCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccCCCCC
Confidence            34567789999999999866666554211         234567899999999999999999999998 99999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG-NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ  168 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~  168 (458)
                      .||||.|+..++.++++.++++|++++..+..|.|++|+|+..| ..+++..+++.|.+++.....+ ||||+|...|+.
T Consensus       408 vTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~  487 (1143)
T KOG4177|consen  408 VTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHT  487 (1143)
T ss_pred             cceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCc
Confidence            99999999999999999999999999999999999999999999 8999999999999998777666 999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (458)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  247 (458)
                      ++++.|++.++..+.....+-+++|.+...+...+++.++++|++++.. ..|+||||+||..|+.++|++|+++|++++
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~  567 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN  567 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc
Confidence            9999999999888888999999999999999999999999999999988 779999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCC
Q 012683          248 VTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAP  314 (458)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (458)
                      .+++.|+||||.|+..|+.+|+.+|+++|+.. +..+.+..+++  ..+.....+...+.+...+.+
T Consensus       568 ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-na~d~~g~TpL--~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGHNDIAELLLKHGASV-NAADLDGFTPL--HIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             ccCCCCCChhhHHHHcChHHHHHHHHHcCCCC-CcccccCcchh--HHHHHhcccchhhHHHhccCc
Confidence            99999999999999999999999999998743 34444444444  444455667777777766665

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.1e-30  Score=244.45  Aligned_cols=206  Identities=32%  Similarity=0.461  Sum_probs=191.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-C-cHHHHHHhCCC
Q 012683           91 ETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-G-TPLIWAAGHGQ  167 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~-t~l~~A~~~~~  167 (458)
                      .+.++.|++.|..+.|+.|++. |.+++..|..|.|+||+|+.+++++++++|+++|+++|..... + ||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4678899999999999999998 9999999999999999999999999999999999999987743 2 99999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP  246 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~  246 (458)
                      ..++++|+++|+|++..|.+|.+|+|.|+..|+.-++-+|+.+|++++.. .+|+||||+|+.+|+...++.|++.|+.+
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999988 78999999999999999999999999999


Q ss_pred             CCCC-CCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhh
Q 012683          247 NVTD-EDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSE  297 (458)
Q Consensus       247 ~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  297 (458)
                      ..+| ..|.||||+|+..|+..+++ |+..++.+.+.++..+.++..++.+.
T Consensus       205 ~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  205 LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9888 89999999999999999999 76677777777777777777777655

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=244.69  Aligned_cols=284  Identities=14%  Similarity=0.094  Sum_probs=215.5

Q ss_pred             HHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHH-cCCHHHHHHHHHhCCCCC---------------
Q 012683           20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR-EGKTDVCKYLLEELKLDV---------------   83 (458)
Q Consensus        20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~ll~~~~~~~---------------   83 (458)
                      .|...|++++|+.|+.+    |+++     +.++..|.||+|+|+. .|+.+++++|+++ |+++               
T Consensus        78 ~~s~n~~lElvk~LI~~----GAdv-----N~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         78 LCSDNIDIELLKLLISK----GLEI-----NSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             HHHhcccHHHHHHHHHc----CCCc-----ccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhc
Confidence            45677999999999987    5554     4566678999999966 6999999999998 8653               


Q ss_pred             ---------------------CCCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-
Q 012683           84 ---------------------DTQDEDGETPLLHAARQG-------HTETAKYLFEHGANPTIPSNLGATALHHSAGIG-  134 (458)
Q Consensus        84 ---------------------~~~~~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-  134 (458)
                                           +..+..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+... 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence                                 234557999999999999       899999999999999999999999999999998 


Q ss_pred             -CHHHHHHHHhCCCCCC-------------C------CC--------CCCc-----------------------------
Q 012683          135 -NIELLTYLLSKGAEVD-------------S------ES--------DAGT-----------------------------  157 (458)
Q Consensus       135 -~~~~~~~Ll~~~~~~~-------------~------~~--------~~~t-----------------------------  157 (458)
                       ..+++++|+...-+..             .      .+        .+++                             
T Consensus       228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q  307 (631)
T PHA02792        228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ  307 (631)
T ss_pred             chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence             7888988887522110             0      00        0000                             


Q ss_pred             -HHHHHHhCC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC--CCcHHHHHHhcC
Q 012683          158 -PLIWAAGHG--QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG--GATPLHIAADIG  231 (458)
Q Consensus       158 -~l~~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~--g~t~L~~A~~~~  231 (458)
                       .||.=..++  +.+++++|+++|++...  ......++.|+..|+.+++++|+++|++++.. .+  +.||||.|+..+
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence             012222223  57899999999998752  23566788999999999999999999999877 33  469999988776


Q ss_pred             cH---HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhc--------cc
Q 012683          232 ST---EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSES--------GK  300 (458)
Q Consensus       232 ~~---~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  300 (458)
                      ..   +++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+.. +..+..+.+++.++....        ..
T Consensus       386 ~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI-N~kD~~G~TpL~~A~~~~~~~~~~i~~~  464 (631)
T PHA02792        386 ESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI-NITTKYGSTCIGICVILAHACIPEIAEL  464 (631)
T ss_pred             cHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHHHhcccHHHHHH
Confidence            54   4688899999999999999999999999999999999999997653 455556667766654311        12


Q ss_pred             hhHHhhhhhcCCCCCC
Q 012683          301 QLEETRNLKENNAPKD  316 (458)
Q Consensus       301 ~~~~~~~l~~~~~~~~  316 (458)
                      ..+....++..+...+
T Consensus       465 ~~~il~lLLs~~p~i~  480 (631)
T PHA02792        465 YIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHhcCCChh
Confidence            2344555555554443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-28  Score=214.41  Aligned_cols=178  Identities=20%  Similarity=0.247  Sum_probs=126.4

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 012683           54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG--HTETAKYLFEHGANPTIPS-NLGATALHHS  130 (458)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A  130 (458)
                      ..+.||||.|+..|+.++|+.|++.    ++..+..|.||||+|+.++  +.+++++|+++|++++..+ ..|.||||+|
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            3456666666666666666666643    3445556666666666543  5666666666666665554 2455555554


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHH
Q 012683          131 AGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA--AGSLTCLDLLI  208 (458)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll  208 (458)
                      +..+                             ..++.+++++|+++|++++..+..|.||||+|+.  .++.+++++|+
T Consensus        95 ~~~~-----------------------------~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li  145 (209)
T PHA02859         95 LSFN-----------------------------KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLI  145 (209)
T ss_pred             HHhC-----------------------------ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            4221                             1235677778888888888888888888888765  35788899999


Q ss_pred             HcCCCcccc-CCCCcHHHH-HHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683          209 QAGANANIV-AGGATPLHI-AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (458)
Q Consensus       209 ~~g~~~~~~-~~g~t~L~~-A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  264 (458)
                      +.|++++.. ..|.||||. |+..++.+++++|+++|++++.+|..|+||||+|+.++
T Consensus       146 ~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        146 DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999888877 678999995 56678999999999999999999999999999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.2e-29  Score=231.26  Aligned_cols=207  Identities=19%  Similarity=0.154  Sum_probs=181.9

Q ss_pred             cCCHHHH-HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCH
Q 012683           66 EGKTDVC-KYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT------IPSNLGATALHHSAG--IGNI  136 (458)
Q Consensus        66 ~g~~~~v-~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~--~~~~  136 (458)
                      +.-++++ ++++.+ |.+++....+|     +|+..+..+++++|+++|++++      .++..++|+||+++.  .|+.
T Consensus        58 ~~~~~~~~~~~~~~-~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~  131 (437)
T PHA02795         58 CDPVDVLYDYFRIH-RDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEI  131 (437)
T ss_pred             CCHHHHHHHHHHHc-Ccchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCH
Confidence            4455554 455665 99999887777     8999999999999999999988      677889999999999  8999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC------CCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          137 ELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET------EDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       137 ~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~------~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                      +++++|+++|++++..+ +.||+|.|+..++.+++++|+++|++.....      ..+.+++|.+...++.+++++|+++
T Consensus       132 eiV~~LI~~GADIn~~~-~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~  210 (437)
T PHA02795        132 DIVDFMVDHGAVIYKIE-CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY  210 (437)
T ss_pred             HHHHHHHHCCCCCCCCC-CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence            99999999999998643 3699999999999999999999998543222      3477899999999999999999999


Q ss_pred             CCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--------CHHHHHhhcCCCCCC
Q 012683          211 GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG--------NREAVEILFPLTSED  279 (458)
Q Consensus       211 g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--------~~~~v~~Ll~~~~~~  279 (458)
                      |++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|        +.+++++|+++++..
T Consensus       211 GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        211 IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            9999988 78999999999999999999999999999999999999999999988        469999999887643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.9e-28  Score=226.34  Aligned_cols=208  Identities=18%  Similarity=0.161  Sum_probs=181.0

Q ss_pred             HHHHcCCHHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           62 FAAREGKTDVCKYLLEELKLDVD------TQDEDGETPLLHAAR--QGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        62 ~A~~~g~~~~v~~ll~~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      +|+..+..+++++|+.+ |++++      .++..++|+||.++.  .|+.++|++|+++|++++..  .+.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSK-NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhc-ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence            99999999999999998 99988      777889999999999  89999999999999999874  458999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCC-------CCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 012683          134 GNIELLTYLLSKGAEVDSES-------DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL  206 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~-------~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  206 (458)
                      ++.+++++|+++|++.....       .+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVel  239 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSW  239 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999997532221       13388999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCcccc-CCCCcHHHHHHhcC--------cHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          207 LIQAGANANIV-AGGATPLHIAADIG--------STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       207 Ll~~g~~~~~~-~~g~t~L~~A~~~~--------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                      |+++|++++.. ..|.||||+|+..|        +.+++++|+++|++++..+..   .+..  ...+.++++.++.+..
T Consensus       240 LL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~--~~~n~~~ik~lI~y~~  314 (437)
T PHA02795        240 LLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN--TIENHDVIKLCIKYFM  314 (437)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc--ccchHHHHHHHHHHHH
Confidence            99999999988 78999999999998        469999999999988875532   2221  1226788888776543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=231.04  Aligned_cols=292  Identities=14%  Similarity=0.143  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHH-HHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF-AAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      +.++|+.-.-+.+...-..++-.+..        ..+..+.+|.+++|+ |+..|++++|++|+++ |++++.++..+.|
T Consensus        37 ~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~  107 (631)
T PHA02792         37 GETPLKAYVTKKNNNIKNDVVILLLS--------SVDYKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGINI  107 (631)
T ss_pred             CCccHHHHHhhhhhhHHHHHHHHHHh--------CCCcCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCc
Confidence            44666666655554333333322111        123566788889976 5668999999999998 9999999999999


Q ss_pred             HHHHHHH-cCCHHHHHHHHHcCCCCC------------------------------------CCCCCCCcHHHHHHHcC-
Q 012683           93 PLLHAAR-QGHTETAKYLFEHGANPT------------------------------------IPSNLGATALHHSAGIG-  134 (458)
Q Consensus        93 ~L~~A~~-~g~~~~v~~Ll~~~~~~~------------------------------------~~~~~g~t~L~~A~~~~-  134 (458)
                      |+|+|+. .++.+++++|+++|++++                                    ..+..|.||||+|+.++ 
T Consensus       108 ~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s  187 (631)
T PHA02792        108 VEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRS  187 (631)
T ss_pred             ceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCC
Confidence            9999966 699999999999998742                                    23556999999999999 


Q ss_pred             ------CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC--CHHHHHHHHhcCCCCC-------------C------CCC
Q 012683          135 ------NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG--QQEAVKVLLEHHANPN-------------A------ETE  186 (458)
Q Consensus       135 ------~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~--~~~~~~~Ll~~~~~~~-------------~------~~~  186 (458)
                            +.++++.|+++|++++..+..+ ||||+|+.+.  +.+++++|++...+..             .      .|.
T Consensus       188 ~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~  267 (631)
T PHA02792        188 QDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDN  267 (631)
T ss_pred             cccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccH
Confidence                  8999999999999998777655 9999999999  8899999986422100             0      000


Q ss_pred             -------CC------------------------------CcHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCcHHHHH
Q 012683          187 -------DN------------------------------ITPLLSAVAAG--SLTCLDLLIQAGANANIVAGGATPLHIA  227 (458)
Q Consensus       187 -------~~------------------------------~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~g~t~L~~A  227 (458)
                             .|                              .-.||.-..++  +.+++++|+++|+++.. .....+++.|
T Consensus       268 ~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r-~~~~n~~~~A  346 (631)
T PHA02792        268 YIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR-FKHINKYFQK  346 (631)
T ss_pred             HHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc-CCcchHHHHH
Confidence                   01                              11244444445  67899999999999752 2356679999


Q ss_pred             HhcCcHHHHHHHHHcCCCCCCCCCCC--CcHHHHHHHcCCH---HHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchh
Q 012683          228 ADIGSTEIIKCLLKAGADPNVTDEDG--QKPIQVAAARGNR---EAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL  302 (458)
Q Consensus       228 ~~~~~~~iv~~Ll~~g~~~~~~~~~g--~t~l~~A~~~~~~---~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (458)
                      +..|+.++|++|+++|++++.+|..|  .||||+|......   +++++|++++++.   +..+..+.+++..+......
T Consensus       347 a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI---N~kD~~G~TPLh~Aa~~~n~  423 (631)
T PHA02792        347 FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI---NKIDKHGRSILYYCIESHSV  423 (631)
T ss_pred             HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc---ccccccCcchHHHHHHcCCH
Confidence            99999999999999999999999875  6999998877664   4688889988753   33444455555555566778


Q ss_pred             HHhhhhhcCCCCCCCC
Q 012683          303 EETRNLKENNAPKDKA  318 (458)
Q Consensus       303 ~~~~~l~~~~~~~~~~  318 (458)
                      +.+..++..++.....
T Consensus       424 eivelLLs~GADIN~k  439 (631)
T PHA02792        424 SLVEWLIDNGADINIT  439 (631)
T ss_pred             HHHHHHHHCCCCCCCc
Confidence            8899999998876644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7e-28  Score=209.51  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=124.8

Q ss_pred             hhhcccCCCcHHHHHHHcC--CHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCC
Q 012683           49 ADIKDANKRGALHFAAREG--KTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQ---GHTETAKYLFEHGANPTIPSNL  122 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~  122 (458)
                      .+..+..|.||||+|+..+  +.+++++|++. |++++.++ ..|.||||+|+..   ++.+++++|+++|++++..|..
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~  122 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED  122 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCC
Confidence            4567889999999999854  89999999998 99999987 5899999998764   4799999999999999999999


Q ss_pred             CCcHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCC-cHHHH-HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 012683          123 GATALHHSAGI--GNIELLTYLLSKGAEVDSESDAG-TPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA  198 (458)
Q Consensus       123 g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  198 (458)
                      |.||||.|+..  ++.+++++|++.|++++..+..+ ||||. ++..++.+++++|+++|++++.++..|.|||++|..+
T Consensus       123 G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        123 GKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            99999998763  57888888888888877666544 88875 4556778888888888888888888888888887765


Q ss_pred             C
Q 012683          199 G  199 (458)
Q Consensus       199 ~  199 (458)
                      +
T Consensus       203 ~  203 (209)
T PHA02859        203 N  203 (209)
T ss_pred             h
Confidence            3

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=2.3e-27  Score=224.99  Aligned_cols=262  Identities=25%  Similarity=0.343  Sum_probs=225.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhc-CCC---chhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCC
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQ-GKG---LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG   90 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g   90 (458)
                      -+.+..|++.||.+.+..+++.-... +..   -.+...+..|.+|.|.||.||.+|+..+++.|++. ...++..+..|
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccC
Confidence            46789999999999999999753221 111   11344566788999999999999999999999987 77888888999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHH
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE  169 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~  169 (458)
                      .+|||+|+.+|+.++++.|+..+..++..+..|.||||.|++.||.+++.+|+.+|.+.-..++.+ |+|..|+..|..+
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            999999999999999999999998889999999999999999999999999999999986666555 9999999999999


Q ss_pred             HHHHHHhcCCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          170 AVKVLLEHHANP--------NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       170 ~~~~Ll~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                      +++.|++.....        ..++..+.+|+|+|+++|+.++++.|++.|.++|....--|+||.|+..|..++|++|++
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~  242 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLE  242 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHh
Confidence            999999863322        234556789999999999999999999999999998777899999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHH---cCCHHHHHhhcCCCC
Q 012683          242 AGADPNVTDEDGQKPIQVAAA---RGNREAVEILFPLTS  277 (458)
Q Consensus       242 ~g~~~~~~~~~g~t~l~~A~~---~~~~~~v~~Ll~~~~  277 (458)
                      .|++...+|..|+|+|++-..   +...+++-++.....
T Consensus       243 ~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~~~  281 (854)
T KOG0507|consen  243 IGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNFEQ  281 (854)
T ss_pred             hccccccccccchHHHHHHHhcchhhhhhhhhhhhcccc
Confidence            999999999999999988764   344567766665554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=3.1e-27  Score=191.84  Aligned_cols=248  Identities=25%  Similarity=0.347  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .....++.++..|-.+.-+.+...+           ....+..|.+.+-.+...|+.+++.....-.+.-++..+.+|++
T Consensus        30 ~q~a~~~~~~~m~~t~p~~~l~~~~-----------s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~   98 (296)
T KOG0502|consen   30 TQIAELFEQVEMGTTEPRCALTAEI-----------SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWS   98 (296)
T ss_pred             HHHHHHHHHhhccccchhHHHHHHH-----------HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhh
Confidence            3566788899998888888887653           34566788888999999999998887776545556667778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHH
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV  171 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~  171 (458)
                      +++.++-.|+...+..++.+|...+..+..+++|+.+++...+++.+..+.++-  ++..++.+ |||.||+..|++.++
T Consensus        99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~--VN~~De~GfTpLiWAaa~G~i~vV  176 (296)
T KOG0502|consen   99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK--VNACDEFGFTPLIWAAAKGHIPVV  176 (296)
T ss_pred             hhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhcc--ccCccccCchHhHHHHhcCchHHH
Confidence            999999999999999999999999999999999999999988888887777654  45555555 999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCC
Q 012683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (458)
Q Consensus       172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  250 (458)
                      ++|++.|++++.......++|++|+..|..++|++|++++.|+|.. .+|-|||-+|++.||.++|+.|++.|++++..+
T Consensus       177 ~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  177 QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            9999999999999999999999999999999999999999999988 789999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhhcC
Q 012683          251 EDGQKPIQVAAARGNREAVEILFP  274 (458)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~Ll~  274 (458)
                      ..|.+++++|...|+. +|+..++
T Consensus       257 dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  257 DSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             ccCCcHHHHHHHhhhH-HHHHHHH
Confidence            9999999999999998 6766664

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.4e-27  Score=193.80  Aligned_cols=229  Identities=24%  Similarity=0.302  Sum_probs=204.3

Q ss_pred             HHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 012683           18 FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA   97 (458)
Q Consensus        18 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A   97 (458)
                      +--++..|+.+.+.....-        .+.-....++.|.++++.++-+|+.+.+..++.. +...|..+--+++|+.++
T Consensus        66 ~~~~~~s~nsd~~v~s~~~--------~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnevs~~p~s~~sls  136 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQL--------DPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEVSLMPWSPLSLS  136 (296)
T ss_pred             cchhhhcCCcHHHHHhhcc--------CCCCCCCCCchhhhhhhhcCCCCCcceeeeeecc-cccCCccccccCChhhHH
Confidence            4456778888888777653        3334456777899999999999999999999988 889999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHh
Q 012683           98 ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLE  176 (458)
Q Consensus        98 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~  176 (458)
                      +...|.+.+..+.++  .+|..|+.|.|||.+|+..|++.++++|++.|++++....+. ++|.+|++.|..+++++|+.
T Consensus       137 Vhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~  214 (296)
T KOG0502|consen  137 VHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLT  214 (296)
T ss_pred             HHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHh
Confidence            999999888887765  577889999999999999999999999999999998776665 99999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCc
Q 012683          177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK  255 (458)
Q Consensus       177 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t  255 (458)
                      ++.|+|..|.+|-|||.+|+..|+.++++.|++.|++++.. ..|++++..|+..|+- +|+..+++-+.+..+|+.-+|
T Consensus       215 r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~  293 (296)
T KOG0502|consen  215 REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRT  293 (296)
T ss_pred             cCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCC
Confidence            99999999999999999999999999999999999999988 7899999999999998 899999887777778877777


Q ss_pred             HHH
Q 012683          256 PIQ  258 (458)
Q Consensus       256 ~l~  258 (458)
                      |+|
T Consensus       294 ~~~  296 (296)
T KOG0502|consen  294 PLH  296 (296)
T ss_pred             CCC
Confidence            764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=4.2e-25  Score=229.06  Aligned_cols=217  Identities=24%  Similarity=0.241  Sum_probs=179.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh-CCCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLL-HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  132 (458)
                      .+...++.|+..|+.+.++.+++. .+.++|..|..|.|||| .|+.+++.+++++|++.|.    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            567899999999999999999975 26788888999999999 8999999999999999987    56789999999987


Q ss_pred             cC---CHHHHHHHHhCCCCC------C-----CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC-------------
Q 012683          133 IG---NIELLTYLLSKGAEV------D-----SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET-------------  185 (458)
Q Consensus       133 ~~---~~~~~~~Ll~~~~~~------~-----~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-------------  185 (458)
                      .+   ...++..+...+.+.      +     ....+.||||+|+.+|+.+++++|+++|++++..+             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            32   223444444444221      0     11234499999999999999999999999998653             


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC---------cHHHHHHHHHcCCCC-------C
Q 012683          186 -EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIG---------STEIIKCLLKAGADP-------N  247 (458)
Q Consensus       186 -~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~---------~~~iv~~Ll~~g~~~-------~  247 (458)
                       ..|.||||.|+..|+.+++++|+++|++++.. ..|+||||+|+..+         ...+.+++++.+...       +
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence             35899999999999999999999999999987 67999999999987         234566666655443       6


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          248 VTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      ..|.+|.||||+|+..|+.+++++|++.
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            7799999999999999999999999984

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=7.1e-25  Score=227.37  Aligned_cols=240  Identities=23%  Similarity=0.178  Sum_probs=187.4

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHH-HHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 012683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALH-FAAREGKTDVCKYLLEELKLDVDTQDED   89 (458)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~~   89 (458)
                      ..+....|+.||..||.+.++.+++...       ....+..|..|.|||| .|+..++.++++.|++. |.    .+..
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~-------~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~~   81 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPK-------KLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGAV   81 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhcccc-------ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCCc
Confidence            3577899999999999999999987521       2234567889999999 88899999999999987 54    6778


Q ss_pred             CCcHHHHHHHcC---CHHHHHHHHHcCCC------C----CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC---
Q 012683           90 GETPLLHAARQG---HTETAKYLFEHGAN------P----TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES---  153 (458)
Q Consensus        90 g~t~L~~A~~~g---~~~~v~~Ll~~~~~------~----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~---  153 (458)
                      |.||||.|+.++   ...++..+...+.+      +    ...+..|.||||+|+..|+.+++++|+++|++++...   
T Consensus        82 G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~  161 (743)
T TIGR00870        82 GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD  161 (743)
T ss_pred             ChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCc
Confidence            999999999732   23344444444322      1    1123469999999999999999999999999987532   


Q ss_pred             ------------CCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC---------CHHHHHHHHHcCC
Q 012683          154 ------------DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG---------SLTCLDLLIQAGA  212 (458)
Q Consensus       154 ------------~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~Ll~~g~  212 (458)
                                  .+.||||.|+..|+.+++++|+++|+|++..|..|+||||+|+..+         ...+.+.+++.+.
T Consensus       162 ~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~  241 (743)
T TIGR00870       162 FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLD  241 (743)
T ss_pred             hhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence                        2349999999999999999999999999999999999999999987         2335566666554


Q ss_pred             Cc-------ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683          213 NA-------NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA  262 (458)
Q Consensus       213 ~~-------~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~  262 (458)
                      ..       +.. .+|.||||+|+..|+.+++++|++.+.+.......+..|.+++..
T Consensus       242 ~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       242 KLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             ccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhhh
Confidence            43       323 579999999999999999999998665555555556666665543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=5e-24  Score=222.12  Aligned_cols=173  Identities=27%  Similarity=0.355  Sum_probs=104.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  134 (458)
                      ++.++||.||..|+.++++.|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..|
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            445666666666666666666655 6666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 012683          135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA  214 (458)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  214 (458)
                      +.+++++|++.+...+.                                  ..+.++||.|+..|+.++++.|+++|+++
T Consensus       603 ~~~iv~~L~~~~~~~~~----------------------------------~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        603 HHKIFRILYHFASISDP----------------------------------HAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             CHHHHHHHHhcCcccCc----------------------------------ccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            66666666654433221                                  22345555555555555555555555555


Q ss_pred             ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHH
Q 012683          215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG-QKPIQVAAA  262 (458)
Q Consensus       215 ~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g-~t~l~~A~~  262 (458)
                      +.. .+|.||||+|+..|+.+++++|+++|++++..|..| .||.+++..
T Consensus       649 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        649 DSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            554 456666666666666666666666666666666655 666665544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=7e-24  Score=221.00  Aligned_cols=189  Identities=25%  Similarity=0.260  Sum_probs=152.5

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCC
Q 012683          102 HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN  180 (458)
Q Consensus       102 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~  180 (458)
                      ..++-..+.+.+..  ..+..+.++|+.|+..|+.++++.|++.|++++..+..+ ||||+|+..|+.+++++|+++|++
T Consensus       506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad  583 (823)
T PLN03192        506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN  583 (823)
T ss_pred             cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Confidence            33444555555443  223346677888888888888888888888887766555 888888888888888888888899


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683          181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (458)
Q Consensus       181 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  260 (458)
                      ++..|.+|+||||.|+..|+.+++++|++.++..+. ..+.++||.|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus       584 in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~-~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A  662 (823)
T PLN03192        584 VHIRDANGNTALWNAISAKHHKIFRILYHFASISDP-HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA  662 (823)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc-ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999999987765543 4577999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHH
Q 012683          261 AARGNREAVEILFPLTSEDPSIPKWTVDGILEY  293 (458)
Q Consensus       261 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  293 (458)
                      +..|+.+++++|++++++....+.....++...
T Consensus       663 ~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l  695 (823)
T PLN03192        663 MAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL  695 (823)
T ss_pred             HHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            999999999999999887655444443444433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=6e-25  Score=215.05  Aligned_cols=260  Identities=26%  Similarity=0.355  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .+..+|+.|+-.|+...|+.|+..        ...+....|.+++|+|-+||..|+.++|+.||.. |++-..++....|
T Consensus       789 kgf~plImaatagh~tvV~~llk~--------ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~-gankehrnvsDyt  859 (2131)
T KOG4369|consen  789 KGFVPLIMAATAGHITVVQDLLKA--------HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA-GANKEHRNVSDYT  859 (2131)
T ss_pred             ccchhhhhhcccCchHHHHHHHhh--------hhhhhhhcccccCceEEEecCCCcchHHHHHHHh-hccccccchhhcC
Confidence            344444444444444444444443        1122333455566666666666666666666655 5555555555566


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC--CcHHHHHHhCCCH
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIP--SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA--GTPLIWAAGHGQQ  168 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--~t~l~~A~~~~~~  168 (458)
                      ||-+|...|.++||..|+..|..++.+  ++.|.+||++|..+||....+.|++.|.++|.....  +|.|-+|+..|..
T Consensus       860 Plsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  860 PLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             chhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            666666666666666666666555433  345666666666666666666666666666543332  2666666666667


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV---AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (458)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  245 (458)
                      +++.+|+.+.+.+..+...|-|||+.++..|.+++=++|+..|+|+|..   ....|+|-+++..||...|+.|+...+.
T Consensus       940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred             hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence            7777777766666667777888888888888888888888888888866   4456778888888888888888887778


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 012683          246 PNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPS  281 (458)
Q Consensus       246 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  281 (458)
                      ++.+|+.|.|+|-+|+..|++..+.+|+++..+...
T Consensus      1020 v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred             eecccCCCCcccchhccCCccccchHHhhcccChhh
Confidence            888888888888888888888888888888765443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-23  Score=198.60  Aligned_cols=236  Identities=30%  Similarity=0.343  Sum_probs=204.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCC------------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 012683           58 GALHFAAREGKTDVCKYLLEELK------------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT  125 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  125 (458)
                      +-|--|+..|+++.+..+++..+            ..++..|.+|.|+||.|+.+|+.+++++|++..+-++..+..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            45778999999999999998632            345667889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683          126 ALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL  204 (458)
Q Consensus       126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  204 (458)
                      |||+|+..|+.++++.++.++..++.....+ ||||.|+..|+.+++.+|+++|.+.-..+..+.|++..|+..|..+++
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vv  164 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVV  164 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHH
Confidence            9999999999999999999997777666555 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcccc---------CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          205 DLLIQAGANANIV---------AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       205 ~~Ll~~g~~~~~~---------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      +.|++...++...         ..+.+|||+|+.+||.++++.|++.|.++|.....| |+||.|+..|..++|.+|++.
T Consensus       165 q~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~  243 (854)
T KOG0507|consen  165 QMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEI  243 (854)
T ss_pred             HHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhh
Confidence            9999873332211         347789999999999999999999999999887655 899999999999999999987


Q ss_pred             CCCCCCCCCcchhhHHHHHH
Q 012683          276 TSEDPSIPKWTVDGILEYMQ  295 (458)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~  295 (458)
                      +- ...+.+...++.+..+.
T Consensus       244 gi-n~h~~n~~~qtaldil~  262 (854)
T KOG0507|consen  244 GI-NTHIKNQHGQTALDIII  262 (854)
T ss_pred             cc-ccccccccchHHHHHHH
Confidence            64 33445555555555443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=183.65  Aligned_cols=180  Identities=26%  Similarity=0.378  Sum_probs=142.1

Q ss_pred             CHHHHHHHHHhCC--------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683           68 KTDVCKYLLEELK--------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIEL  138 (458)
Q Consensus        68 ~~~~v~~ll~~~~--------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~  138 (458)
                      +.+.|+..+..++        .-+|..|.+|+|+||+|+.++++++|+.||+.| ++++..|..|.||+++++-..-   
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l---  314 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL---  314 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh---
Confidence            4555554444322        236788899999999999999999999999988 7899999999999998874210   


Q ss_pred             HHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 012683          139 LTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV  217 (458)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  217 (458)
                                              -...+..+|.-|...| ++|.+ ...|.|+|++|+..|+.++|+.||..|+|+|+.
T Consensus       315 ------------------------k~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQ  369 (452)
T KOG0514|consen  315 ------------------------KQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQ  369 (452)
T ss_pred             ------------------------cchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccc
Confidence                                    0011334455555443 45554 345889999999999999999999999999988


Q ss_pred             -CCCCcHHHHHHhcCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          218 -AGGATPLHIAADIGSTEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       218 -~~g~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                       .+|-|+|+.||++||.+||++||.. ++|+..+|.+|.|+|.+|...||.+|.-+|..+
T Consensus       370 DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  370 DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence             7899999999999999999999964 789999999999999999999999999888644

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.90  E-value=3e-24  Score=210.23  Aligned_cols=297  Identities=25%  Similarity=0.301  Sum_probs=235.5

Q ss_pred             hhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-C
Q 012683            9 LAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-D   87 (458)
Q Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~   87 (458)
                      +..+..-+.|..||..|+.|.|+.|+..    |+++     ..+|..|.+||.+|+-.||..+|..|+.. .++++.. |
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~r----gani-----ehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsd  821 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVR----GANI-----EHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSD  821 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHh----cccc-----cccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcc
Confidence            3344555678889999999999888876    3333     56788899999999999999999998887 7777654 6


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC---cHHHHHHh
Q 012683           88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG---TPLIWAAG  164 (458)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~---t~l~~A~~  164 (458)
                      ..+.|+|-+||..|..++|++||..|++-..++....|||.+|...|..++++.|+..|..++.+....   +||++|..
T Consensus       822 rtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  822 RTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             cccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh
Confidence            788899999999999999999999998888888888899999999999999999999998887655332   88999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHc
Q 012683          165 HGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKA  242 (458)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~  242 (458)
                      +|+...++.|++.|.|+|.. ..+.+|.|-+|+..|..+++.+||...+.+..+ ..|.|||+-++..|.+++-++|+..
T Consensus       902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence            99999999999999888865 456778899999999999999999988888887 7789999999999999999999999


Q ss_pred             CCCCCCC--CCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCC
Q 012683          243 GADPNVT--DEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKA  318 (458)
Q Consensus       243 g~~~~~~--~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  318 (458)
                      |+|.+..  .....|+|.+++..||...|..|+.- .....+++..+.  +.+..+..+..+.....+++.+++.+..
T Consensus       982 gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~-~atv~v~NkkG~--T~Lwla~~Gg~lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen  982 GADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG-DATVRVPNKKGC--TVLWLASAGGALSSCPILVSSVADADQQ 1056 (2131)
T ss_pred             ccccccCCCCCcCCccceeecCCCchhhhHHhhCC-ccceecccCCCC--cccchhccCCccccchHHhhcccChhhh
Confidence            9887642  33445788889999999999888853 333344444443  4444555556777777888887776644

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=2.9e-23  Score=190.76  Aligned_cols=229  Identities=29%  Similarity=0.427  Sum_probs=180.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L   94 (458)
                      .-.+..|+..||.+-|+.++...    ++     .+..+.+|.|+||.+|...+.+||++|++. |++|+..|..|||||
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~g----a~-----~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPl  110 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRG----AS-----PNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPL  110 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccC----CC-----ccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcc
Confidence            34578899999999999998762    22     267788999999999999999999999997 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC--cHHHHHHhCCCHHHH
Q 012683           95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG--TPLIWAAGHGQQEAV  171 (458)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~--t~l~~A~~~~~~~~~  171 (458)
                      |.|+..||..++++|+++|+++...|..|..|..++......+++..-.. .|.+++......  +.|        .++-
T Consensus       111 haaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml--------~D~~  182 (527)
T KOG0505|consen  111 HAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTML--------DDAR  182 (527)
T ss_pred             hhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHH--------HHHH
Confidence            99999999999999999999988888888888887776555555544443 233321110000  111        1223


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCC
Q 012683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (458)
Q Consensus       172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  250 (458)
                      .+ +..|...+..+..|.|.||.|+.+|..++.++|++.|.+++.. .+|.||||.|+..|+.+++++|+++|++.+...
T Consensus       183 q~-l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  183 QW-LNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             HH-HhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhh
Confidence            33 3477777877777999999999999999999999999998888 679999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHH
Q 012683          251 EDGQKPIQVAAA  262 (458)
Q Consensus       251 ~~g~t~l~~A~~  262 (458)
                      ..|.||+++|..
T Consensus       262 ~~g~~p~dv~de  273 (527)
T KOG0505|consen  262 KMGETPLDVADE  273 (527)
T ss_pred             hcCCCCccchhh
Confidence            999999988753

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=3.3e-22  Score=174.69  Aligned_cols=184  Identities=29%  Similarity=0.424  Sum_probs=128.5

Q ss_pred             CChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc----
Q 012683           25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ----  100 (458)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~----  100 (458)
                      -+.++|+..+..+...+..+-.-+.++.|.+|+|+||||+.++++++|+.||+..-++++..|..|.||+++++..    
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence            3578899999888887777778888999999999999999999999999999996689999999999999998864    


Q ss_pred             -CCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcC
Q 012683          101 -GHTETAKYLFEHGANPTIP-SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH  178 (458)
Q Consensus       101 -g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~  178 (458)
                       .+.++|..|.+.| ++|.+ ...|.|+                                |++|+.+|+.++++.|+..|
T Consensus       317 ~~d~~vV~~LF~mg-nVNaKAsQ~gQTA--------------------------------LMLAVSHGr~d~vk~LLacg  363 (452)
T KOG0514|consen  317 PADRTVVERLFKMG-DVNAKASQHGQTA--------------------------------LMLAVSHGRVDMVKALLACG  363 (452)
T ss_pred             hhhHHHHHHHHhcc-Ccchhhhhhcchh--------------------------------hhhhhhcCcHHHHHHHHHcc
Confidence             3566677776654 33332 2234444                                55555555555555555555


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       179 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                      +|+|.+|.+|.|+|++|+..|+.+++++||.. ++++... .+|-|+|.+|...||-+|.-+|..
T Consensus       364 AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  364 ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            55555666666666666666666666555532 4555444 456666666666666666655553

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.87  E-value=9.6e-22  Score=169.61  Aligned_cols=125  Identities=34%  Similarity=0.509  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      +....++.++.+|+.+.+.++|.+|+..|++||+++|+++..|.|||.+|.++|+|+.|+++|+.|+++||.+.++|-++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      |.+|..+|+|++|++.|++||.++|+++.++.+|..+..+++...
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999988877655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=1.4e-21  Score=179.81  Aligned_cols=213  Identities=30%  Similarity=0.399  Sum_probs=173.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683           59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (458)
Q Consensus        59 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~  138 (458)
                      .+.-|+..|+.+-|+.|+.. |+.++..|.+|.|+||-+|.-.+.+||++|+++|++++..|..|+||||.|+..|++.+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            46778899999999999987 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCC-CCCcHHHHHHhCCCHHHHHHHHh-cCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683          139 LTYLLSKGAEVDSES-DAGTPLIWAAGHGQQEAVKVLLE-HHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANAN  215 (458)
Q Consensus       139 ~~~Ll~~~~~~~~~~-~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  215 (458)
                      +++|++.|+++...+ .++.|..++...-..+++..-.. .|++++.- .....+-|+        ++-.|+ ..|.+.+
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q~l-~~G~~~d  192 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQWL-NAGAELD  192 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHHHH-hcccccc
Confidence            999999999886544 44478777665555555444333 23332110 000111111        233344 4788877


Q ss_pred             cc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCC
Q 012683          216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPS  281 (458)
Q Consensus       216 ~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  281 (458)
                      +. ..|-|+||+|+-+|..++.++|++.|.+++.+|.+||||||.|+..|+.++.++|++++.....
T Consensus       193 ~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  193 ARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             ccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            77 4499999999999999999999999999999999999999999999999999999999886544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=6.4e-21  Score=159.55  Aligned_cols=81  Identities=21%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             HHHHhcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q 012683          172 KVLLEHHANPNAET-EDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNV  248 (458)
Q Consensus       172 ~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~  248 (458)
                      ++|++.|++++.++ ..|.||||+|+..|+.+++++|++ .|++++.. ..|.||||+|+..++.+++++|+++|++++.
T Consensus        77 ~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         77 ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             HHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            34444444444433 234444444444444444444442 34444433 3344444444444444444444444444444


Q ss_pred             CCCC
Q 012683          249 TDED  252 (458)
Q Consensus       249 ~~~~  252 (458)
                      ++..
T Consensus       157 ~~~~  160 (166)
T PHA02743        157 PLSI  160 (166)
T ss_pred             cccC
Confidence            4433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=157.31  Aligned_cols=137  Identities=18%  Similarity=0.194  Sum_probs=102.9

Q ss_pred             cccCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCCCCC-CCC
Q 012683           52 KDANKRGALHFAAREGKT----DVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTET---AKYLFEHGANPTIPS-NLG  123 (458)
Q Consensus        52 ~~~~g~t~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~~~~~~~~~-~~g  123 (458)
                      .+.++.++||.||+.|++    +++++|++. +..++..|..|+||||+|+..|+.++   +++|++.|++++.++ ..|
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g   94 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTG   94 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCC
Confidence            445677788888888887    445555554 77778888888888888888877544   778888888888877 478


Q ss_pred             CcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC
Q 012683          124 ATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI  189 (458)
Q Consensus       124 ~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  189 (458)
                      .||||+|+..++.+++++|+. .|++++..+..+ ||||+|+..++.+++++|+++|++++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            888888888888888888884 677776655444 788888877777888888877777777666553

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=2.1e-20  Score=157.25  Aligned_cols=130  Identities=23%  Similarity=0.248  Sum_probs=99.2

Q ss_pred             hhcccCCCcHHHHHHHcCCHHHHHHHHHh-----CCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Q 012683           50 DIKDANKRGALHFAAREGKTDVCKYLLEE-----LKLDVDTQDEDGETPLLHAARQGH----TETAKYLFEHGANPTIPS  120 (458)
Q Consensus        50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~-----~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~  120 (458)
                      +.++..|.||||+|+..|+.++++.|+..     .|.+++.+|..|+||||+|+..|+    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            34567888889998888888888887542     256778888888888888888887    477888888888888777


Q ss_pred             C-CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCC
Q 012683          121 N-LGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA  179 (458)
Q Consensus       121 ~-~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~  179 (458)
                      . .|.||||+|+..++.+++++|+. .|++++..+..+ ||||+|+..++.+++++|++.+.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            4 78888888888888888888876 477766555444 77777777777777777776643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=5.9e-20  Score=165.36  Aligned_cols=153  Identities=22%  Similarity=0.210  Sum_probs=107.8

Q ss_pred             CCCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCC----CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-C-CCCc
Q 012683           85 TQDEDGET-PLLHAARQGHTETAKYLFEHGANPTIP----SNLGATALHHSAGIGNIELLTYLLSKGAEVDSE-S-DAGT  157 (458)
Q Consensus        85 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~-~~~t  157 (458)
                      .+|..|.| +||.|+..|+.+++++|+++|++++..    +..|.||||+|+..++.+++++|+++|++++.. + .+.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            44555554 456666677888888888888888776    347888888888888888888888888877763 2 2447


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHH
Q 012683          158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK  237 (458)
Q Consensus       158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~  237 (458)
                      |||+|+..++.+++++|+.+|++++..+..|.||||+|+..++..++..+...+    ....+.+|++++   ++.++++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~n~ei~~  179 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE----ISNFYKHPKKIL---INFDILK  179 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc----ccccccChhhhh---ccHHHHH
Confidence            888888888888888888888888887778888888887777777665554222    123356666654   3677777


Q ss_pred             HHHHcCC
Q 012683          238 CLLKAGA  244 (458)
Q Consensus       238 ~Ll~~g~  244 (458)
                      +|+.+++
T Consensus       180 ~Lish~v  186 (300)
T PHA02884        180 ILVSHFI  186 (300)
T ss_pred             HHHHHHH
Confidence            7777654

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=1.1e-19  Score=153.00  Aligned_cols=129  Identities=20%  Similarity=0.275  Sum_probs=91.2

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCC
Q 012683           84 DTQDEDGETPLLHAARQGHTETAKYLFE------HGANPTIPSNLGATALHHSAGIGN----IELLTYLLSKGAEVDSES  153 (458)
Q Consensus        84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~  153 (458)
                      +.++..|.||||+|+..|+.++++.|+.      .|++++..|..|.||||+|+..|+    .+++++|++.|++++..+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4567788999999999999999988754      357778888888888888888877    466677777776666544


Q ss_pred             --CCCcHHHHHHhCCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683          154 --DAGTPLIWAAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (458)
Q Consensus       154 --~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  212 (458)
                        .+.||||+|+..++.+++++|+. .|++++..+.+|.||||.|+..++.+++++|++.++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence              33466666666666666666665 466666666666666666666666666666665543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4e-19  Score=160.02  Aligned_cols=153  Identities=20%  Similarity=0.138  Sum_probs=130.4

Q ss_pred             hcccCCCc-HHHHHHHcCCHHHHHHHHHhCCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCC
Q 012683           51 IKDANKRG-ALHFAAREGKTDVCKYLLEELKLDVDTQD----EDGETPLLHAARQGHTETAKYLFEHGANPTIP-SNLGA  124 (458)
Q Consensus        51 ~~~~~g~t-~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~  124 (458)
                      .+|..|.| +||.|+..|+.+++++|++. |++++..+    ..|.||||+|+..|+.+++++|+++|++++.. +..|.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            35555555 67777888999999999998 99999874    58999999999999999999999999999986 56899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683          125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC  203 (458)
Q Consensus       125 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  203 (458)
                      ||||.|+..++.+++++|+..|++++..+..+ ||||+|+..++.+++..+...+     .+..+.+|.+..   ++.++
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE-----ISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-----ccccccChhhhh---ccHHH
Confidence            99999999999999999999999999877666 9999999999988876665322     355567787764   47899


Q ss_pred             HHHHHHcCC
Q 012683          204 LDLLIQAGA  212 (458)
Q Consensus       204 ~~~Ll~~g~  212 (458)
                      ++.|++++.
T Consensus       178 ~~~Lish~v  186 (300)
T PHA02884        178 LKILVSHFI  186 (300)
T ss_pred             HHHHHHHHH
Confidence            999999887

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=2e-19  Score=149.31  Aligned_cols=131  Identities=24%  Similarity=0.257  Sum_probs=89.6

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHh-C-----CCCCCCCCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCCC
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEE-L-----KLDVDTQDEDGETPLLHAARQGHT---ETAKYLFEHGANPTIP  119 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~-~-----~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~  119 (458)
                      ....|.+|.||||+|+..|+..  ..++.. .     +..++..|..|.||||+|+..|+.   +++++|++.|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            4556778999999999999842  222221 0     111234577888888888888876   4577888888888887


Q ss_pred             C-CCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCC
Q 012683          120 S-NLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP  181 (458)
Q Consensus       120 ~-~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~  181 (458)
                      + ..|.||||+|+..|+.+++++|+. .|++++..+..+ ||||+|+..|+.+++++|+++|++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7 478888888888877777777776 366665554433 6666666666666666666666544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=1.1e-18  Score=137.00  Aligned_cols=141  Identities=32%  Similarity=0.402  Sum_probs=114.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683           59 ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (458)
Q Consensus        59 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~  138 (458)
                      .+.+|+..|.+..|+.|++...-.+|.+|.+|.||||-|+.+||.+||+.|+..|++.+.+...|+||||-||.=++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            46778888888888888887666788888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH-HHHHH-hcCCCCCCCCCCCCcHHHHHHHcC
Q 012683          139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA-VKVLL-EHHANPNAETEDNITPLLSAVAAG  199 (458)
Q Consensus       139 ~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~-~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~  199 (458)
                      +.+|+++|++++....+. ||||+|+...+... +.+|+ ..+.++...+..+.|++.+|-+.+
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            888888888888777666 88888887766543 44444 456666677788889998887764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.6e-19  Score=146.60  Aligned_cols=144  Identities=18%  Similarity=0.196  Sum_probs=114.2

Q ss_pred             CCchhhhhhhHH--HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHH---HHHHHH
Q 012683            2 APDASHALAVRE--RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD---VCKYLL   76 (458)
Q Consensus         2 ~~~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~ll   76 (458)
                      ||..+.....+.  +.++||.||+.|++..+........    ...+......|.+|.||||+|+..|+.+   ++++|+
T Consensus         3 ~~~~~~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~----~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll   78 (154)
T PHA02736          3 PPEEIIFASEPDIEGENILHYLCRNGGVTDLLAFKNAIS----DENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM   78 (154)
T ss_pred             ccchhhHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhc----chhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH
Confidence            344444444443  6799999999999432211111111    1112334567889999999999999875   688888


Q ss_pred             HhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 012683           77 EELKLDVDTQD-EDGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD  150 (458)
Q Consensus        77 ~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  150 (458)
                      +. |++++.++ ..|+||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.|++.+
T Consensus        79 ~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         79 EW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             Hc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            87 99999998 589999999999999999999998 599999999999999999999999999999999998764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=2.8e-18  Score=134.66  Aligned_cols=140  Identities=27%  Similarity=0.303  Sum_probs=120.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CcHHHHHHhCCCHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQQE  169 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~t~l~~A~~~~~~~  169 (458)
                      .-+..|+..+....|+.||+-.++ ++.+|.+|.||||.|+.+|+++|++.|+..|++.+..... +||||.||.-++.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            346788889999999999987765 7899999999999999999999999999999999866654 49999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH-HHHHHHH-HcCCCcccc-CCCCcHHHHHHhcC
Q 012683          170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSL-TCLDLLI-QAGANANIV-AGGATPLHIAADIG  231 (458)
Q Consensus       170 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~  231 (458)
                      ++-.|+++|+|+|.......||||+++...+. ..+++|+ ..++.+... ..+.||+.+|-+.+
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999999999999999988765 4455554 556666655 66889999997765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=1.2e-18  Score=168.48  Aligned_cols=206  Identities=28%  Similarity=0.305  Sum_probs=164.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhC--------CCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC----CC-CCCC
Q 012683           58 GALHFAAREGKTDVCKYLLEEL--------KLDVDTQDEDGETPLLHAARQ---GHTETAKYLFEHGAN----PT-IPSN  121 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~--------~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~----~~-~~~~  121 (458)
                      .++..|...|.+..+..++...        ..+++.+..-|+|+||.|..+   ++.+++..|++.-..    +. ....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            6788888888888887776652        256777788899999999974   466889999875432    11 1234


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHH-HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 012683          122 LGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIW-AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA  198 (458)
Q Consensus       122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  198 (458)
                      .|.||||+|+.+.+.++|++|++.|+|++..-.|.  .|=.. +.+            ...+..-.-..|+.||.+|+..
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~r------------k~T~Y~G~~YfGEyPLSfAAC~  250 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASR------------KSTNYTGYFYFGEYPLSFAACT  250 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccc------------cccCCcceeeeccCchHHHHHc
Confidence            69999999999999999999999999987544332  11000 000            1122222245689999999999


Q ss_pred             CCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          199 GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD--PNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       199 ~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      ++.+++++|+++|+|++.. ++|+|.||..+..-..++..+++++|++  ...+|+.|-|||.+|+.-|+.+|++.+++.
T Consensus       251 nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  251 NQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999998 8899999999999999999999999999  889999999999999999999999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=2.8e-18  Score=165.86  Aligned_cols=217  Identities=25%  Similarity=0.290  Sum_probs=165.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCC----CC
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQ----DE   88 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~----~~   88 (458)
                      ..++.+...|++..+..+.............+..+.+...|.|+||.|..+   ++.++++.|++..+.-+|..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            778899999999888888776533211122334555678899999999983   45689999999876555543    35


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCcHHHHHHhCCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQ  167 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~t~l~~A~~~~~  167 (458)
                      .|+||||+|+.+.+.++|++|++.|+|++.+-.. .  +..+-..+   -.+    ...+..- -..|..||.+|+-.++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G-~--FF~~~dqk---~~r----k~T~Y~G~~YfGEyPLSfAAC~nq  252 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACG-A--FFCPDDQK---ASR----KSTNYTGYFYFGEYPLSFAACTNQ  252 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc-c--ccCccccc---ccc----cccCCcceeeeccCchHHHHHcCC
Confidence            7999999999999999999999999998754210 0  00000000   000    1111111 1123389999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--cccc-CCCCcHHHHHHhcCcHHHHHHHHHc
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN--ANIV-AGGATPLHIAADIGSTEIIKCLLKA  242 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~  242 (458)
                      .+|+++|+++|+|++.+|..|+|.||..+..-..++...++++|++  .... ..|-|||.+|+..|..+|++.+++.
T Consensus       253 ~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  253 PEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999  5555 6799999999999999999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=3.6e-17  Score=122.14  Aligned_cols=88  Identities=41%  Similarity=0.630  Sum_probs=77.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683           60 LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL  139 (458)
Q Consensus        60 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  139 (458)
                      ||+||..|+++++++|++. +.+++.    |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7899999999999999986 777666    88899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 012683          140 TYLLSKGAEVDSE  152 (458)
Q Consensus       140 ~~Ll~~~~~~~~~  152 (458)
                      ++|+++|++++..
T Consensus        76 ~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   76 KLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHTTT-TTSS
T ss_pred             HHHHHcCCCCCCc
Confidence            9999999888754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=6.2e-17  Score=120.86  Aligned_cols=80  Identities=41%  Similarity=0.628  Sum_probs=35.7

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683          193 LSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL  272 (458)
Q Consensus       193 ~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (458)
                      |+|+..|+++++++|++.+.+++.   |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~---~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL---GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS---SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC---CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            444444444444444444444433   34444444444444444444444444444444444444444444444444444


Q ss_pred             cCC
Q 012683          273 FPL  275 (458)
Q Consensus       273 l~~  275 (458)
                      +++
T Consensus        79 l~~   81 (89)
T PF12796_consen   79 LEH   81 (89)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            444

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.72  E-value=1.5e-16  Score=129.53  Aligned_cols=116  Identities=16%  Similarity=0.179  Sum_probs=111.2

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      .+...|..+++.|+|++|+..|++++.++|.++.+|+++|.++.++|++++|+..|+++++++|+++.+++++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          416 EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      |++++|+..|+++++++|+++.++..++.++..++.
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998876654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.4e-16  Score=147.43  Aligned_cols=116  Identities=47%  Similarity=0.779  Sum_probs=113.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ++..+..|+.+|+.|+|..|+..|++||..+|+++.+|+|||.||.+++.+..|+++++++++++|++.++|++.|.++.
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      .+.+|+.|++.|+++++++|++.++...+.+|..++
T Consensus       438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1e-17  Score=142.27  Aligned_cols=115  Identities=30%  Similarity=0.395  Sum_probs=107.6

Q ss_pred             hhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683           47 TVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA  126 (458)
Q Consensus        47 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  126 (458)
                      ...+.-|..|.+|||+||+.|+..+|+.|+.+ |+.+|..|.-..||||+|+.+||-++|+.|++..+|++..+..|.||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp  103 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP  103 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence            34567788999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHH
Q 012683          127 LHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWA  162 (458)
Q Consensus       127 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A  162 (458)
                      ||+||.-|.-.+++-|+..|+.++..+..+ |||..|
T Consensus       104 lhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            999999999999999999999998877766 999876

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=7e-16  Score=123.32  Aligned_cols=121  Identities=44%  Similarity=0.672  Sum_probs=78.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  132 (458)
                      +.+|.||||+|+..|+.+++++|++. +.+.+..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|.|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            35567777777777777777777765 55556666677777777777777777777777776666666666677777666


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (458)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L  174 (458)
                      .++.+++++|++.+.+.+..+..+ ||++.|...++.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666665544433333 666666666666655554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.8e-16  Score=142.94  Aligned_cols=132  Identities=26%  Similarity=0.401  Sum_probs=121.0

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHHHH
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHALAD  390 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~  390 (458)
                      ..++....+...++.|+.+|+.|+|..|+..|.+|+..-+..               ..++.|+|.|++++++|.+|+..
T Consensus       200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            334678889999999999999999999999999999864421               25899999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683          391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK  457 (458)
Q Consensus       391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  457 (458)
                      |.+++.++|+|.+++|++|.++..+|+|+.|+..|+++++++|+|..+...+..+.++.+++.++++
T Consensus       280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek  346 (397)
T KOG0543|consen  280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK  346 (397)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988776654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=9.6e-17  Score=136.42  Aligned_cols=114  Identities=37%  Similarity=0.482  Sum_probs=73.3

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683          114 ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL  192 (458)
Q Consensus       114 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  192 (458)
                      -|.+.-|..|.+|||+|++.|+..+++.|+.+|+.++..+.+. ||||+|+..|+.++++.|++..+|+|..++.|+|||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence            4455555666666666666666666666666666666555444 666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHH
Q 012683          193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIA  227 (458)
Q Consensus       193 ~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A  227 (458)
                      |+||..|.-.+.+-|+..|+-+++. +.|.|||..|
T Consensus       105 hyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            6666666666666666666666655 5566666655

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=1.4e-15  Score=121.65  Aligned_cols=122  Identities=45%  Similarity=0.657  Sum_probs=88.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHh
Q 012683           86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG  164 (458)
Q Consensus        86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~  164 (458)
                      ++..|.||||.|+..|+.+++++|++.+.+.+..+..|.||+|.|+..++.+++++|++.+..++..+..+ ||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34667888888888888888888888887777777778888888888888888888887776555444333 77777777


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683          165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (458)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  207 (458)
                      .++.+++++|++++.+.+..+..+.||++.|...++.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            7777777777777766666666666777777666666666665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=8.4e-16  Score=124.44  Aligned_cols=121  Identities=31%  Similarity=0.399  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      ...+..++..|+.+|.+|+|++|...|+.||++.|..+     -+|.|+|.|.++++.++.|+.+|.+||+++|.+-+++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            45678899999999999999999999999999999754     5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          406 YREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       406 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      .++|.+|..+..|++|+++|++.+..+|...++.....++-.++..
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e  217 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE  217 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999999999988887777655543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.67  E-value=9.6e-16  Score=144.13  Aligned_cols=118  Identities=35%  Similarity=0.523  Sum_probs=113.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..++.+|+.+|..|+|++|++.|++|++++|+++.+|+++|.++.++|++++|+.++++|++++|+++.+|+++|.+++.
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      +|+|++|+..|+++++++|+++.+...++.|..++...
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999998888553

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=8.3e-16  Score=107.57  Aligned_cols=104  Identities=25%  Similarity=0.403  Sum_probs=89.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~   95 (458)
                      ..+++++++|.+|-|++.+...    .++    .+  ...|.+|||+|+-+|.++++++|+.. |++++.+|++|.|||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g----~nV----n~--~~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLL   72 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG----LNV----NE--IYGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLL   72 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc----ccH----HH--HhCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHH
Confidence            3578999999999999998762    111    22  23799999999999999999999998 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (458)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  130 (458)
                      .|+..||.+||++||++|++-.....+|.+.+..+
T Consensus        73 sAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   73 SAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999999999999988888887776543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.8e-15  Score=138.28  Aligned_cols=128  Identities=30%  Similarity=0.402  Sum_probs=113.7

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      ..++..+.+.+++.+|+.+|++|.|++||.+|++||+++|+.+.+|.||+.||..+|+|++.++++.+|++++|++.+++
T Consensus       107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl  186 (606)
T KOG0547|consen  107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL  186 (606)
T ss_pred             ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence            44566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhhhhh
Q 012683          406 YREGAALRLLEKFDEAANAFYEGVTL-DPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       406 ~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ++++.++..+|++.+|+.+..-..-+ .-++....-.+.++++.++...
T Consensus       187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~k  235 (606)
T KOG0547|consen  187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKK  235 (606)
T ss_pred             HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999987654332 3356677777788887776544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.64  E-value=4.5e-15  Score=118.21  Aligned_cols=119  Identities=11%  Similarity=0.031  Sum_probs=108.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +..+.+...|..++..|++++|...|+-.+.++|.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++..+++.|.|
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c  112 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHHhh
Q 012683          412 LRLLEKFDEAANAFYEGVTLD---PENKELVFAFREAVEAGR  450 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~  450 (458)
                      +..+|+.+.|++.|+.++..-   |.+...+......+..+.
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhh
Confidence            999999999999999999875   556666665555555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.5e-15  Score=140.67  Aligned_cols=113  Identities=42%  Similarity=0.632  Sum_probs=110.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+..+|+..|..|+|+.|+..|+.||.++|.+..+|+||..||..+|+|++|+++..+.++++|+|+++|.++|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      .+|+|++|+..|.++|+.+|+++.....+..+.
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999987

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.59  E-value=9e-15  Score=128.12  Aligned_cols=123  Identities=30%  Similarity=0.351  Sum_probs=114.6

Q ss_pred             CCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHH
Q 012683          325 EVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA  404 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  404 (458)
                      .+-++....+..++++|+.||++|.|++||.+|.+++..+|.++..+.|||.+|+++.+|..|..+|..|+.++-.+.++
T Consensus        88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA  167 (536)
T KOG4648|consen   88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA  167 (536)
T ss_pred             HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence            34456677788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      |-++|.+-..+|..++|.++++.+|+++|++.+....++.+..
T Consensus       168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999999999999888877766643

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=1.5e-14  Score=101.32  Aligned_cols=100  Identities=31%  Similarity=0.451  Sum_probs=85.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 012683          126 ALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD  205 (458)
Q Consensus       126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  205 (458)
                      -+.+++.+|.++-++.....|.+++....+.+|||+|+..|+.+++++|+..|++++.+|.+|-|||..|++.|+.++|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            46678888999999999888888877766669999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcccc-CCCCcHHH
Q 012683          206 LLIQAGANANIV-AGGATPLH  225 (458)
Q Consensus       206 ~Ll~~g~~~~~~-~~g~t~L~  225 (458)
                      +|+++|++.... .+|.+.+.
T Consensus        85 lLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHcCcccceeCCCchhHHh
Confidence            999999988877 66666553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.57  E-value=5e-15  Score=138.98  Aligned_cols=121  Identities=18%  Similarity=0.252  Sum_probs=84.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +.++.+.|++|-..+.|++|+.+|.+|+.+.|+++.++.|+|.+|...|..+-|+..|++|+.++|+++.+|.++|.++.
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ..|+..+|..+|.+|+.+.|+++++..+|+.++..++++++
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~  372 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE  372 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence            77777777777777777777777777777777666666544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.55  E-value=1.3e-13  Score=111.88  Aligned_cols=116  Identities=20%  Similarity=0.228  Sum_probs=107.6

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+......|..++..|++++|++.|++++..+|.++.+++++|.++.++|++++|+..+.++++++|+++..++.+|.+
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      +...|++++|+..|+++++++|++..+......+..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            999999999999999999999999886655554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=4.6e-14  Score=120.16  Aligned_cols=120  Identities=31%  Similarity=0.377  Sum_probs=112.5

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTE  234 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~  234 (458)
                      +||.-++..|..+-...|++..-++|..|.+|+++|..|+..|+.+++++|++.|+|+|..  ..+.||||.|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            7888899999999999999887778999999999999999999999999999999999988  56899999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      +.++|++.|+.....|.-|+|+-.+|+.-||.++|..+-.+-
T Consensus        94 vcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   94 VCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             HHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence            999999999999999999999999999999999998876553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=3.7e-14  Score=133.26  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=114.9

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ..-+++..+.|..|-++|++++|+.+|++||++.|..+.+|.|+|..|-.+|+..+|++.|.+||+++|...+++.++|.
T Consensus       385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas  464 (966)
T KOG4626|consen  385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS  464 (966)
T ss_pred             hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence            35577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      +|...|+..+|+..|+.|+++.|+.+++.-++..++.-+-++
T Consensus       465 i~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw  506 (966)
T KOG4626|consen  465 IYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW  506 (966)
T ss_pred             HhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence            999999999999999999999999999999999998766443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=3e-13  Score=120.38  Aligned_cols=122  Identities=39%  Similarity=0.534  Sum_probs=111.3

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC---Ccccc-CCCCcHHH
Q 012683          155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-----LTCLDLLIQAGA---NANIV-AGGATPLH  225 (458)
Q Consensus       155 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~g~---~~~~~-~~g~t~L~  225 (458)
                      ..++++.++..+..+++++++..|.+++..+..|.||+|+|+..++     .++++.|++.|+   ..+.. ..|+||||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~  152 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH  152 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence            4488999999999999999999999999999999999999999999     999999999999   44442 77999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      +|+..|+.+++++|++.|++++.++..|.|+++.|+..++.++++.++..+
T Consensus       153 ~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999865

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.52  E-value=1.8e-13  Score=125.97  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..++.++.+|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      ++..|++++|++.|+++++.+|+++.
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=3.6e-14  Score=94.34  Aligned_cols=54  Identities=52%  Similarity=0.783  Sum_probs=45.9

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 012683          220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (458)
Q Consensus       220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (458)
                      |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.5e-13  Score=121.17  Aligned_cols=124  Identities=34%  Similarity=0.508  Sum_probs=110.1

Q ss_pred             chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683          327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      .-.+.+..+.+++.|+..|++|.|..|.++|+.||.++|.+    .-+|.|||.+..++|+..+|+.+++.|+.+||...
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi  321 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI  321 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence            34556778899999999999999999999999999999985    57899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++|.++|.|+..+++|++|.++|++|+++..+ .+.+..+..+...+++
T Consensus       322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkk  369 (486)
T KOG0550|consen  322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKK  369 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHH
Confidence            99999999999999999999999999998766 5555555555555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.47  E-value=3.1e-13  Score=110.04  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=93.6

Q ss_pred             HHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          354 VDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       354 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      ...|+++++++|++   ++.+|.++...|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|.++++++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35789999999886   678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhhhhhcC
Q 012683          434 ENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       434 ~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +++.+++.++.++.++|+..++
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999988764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.46  E-value=1.4e-12  Score=112.04  Aligned_cols=111  Identities=15%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHH-HhhCC--HHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCW-IRLGQ--AEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ..++.+...|..+...|++++|+..|++++++.|+++.+++++|.++ ...|+  +++|.+.++++++++|+++.+++.+
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L  150 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL  150 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence            34677999999999999999999999999999999999999999985 67787  5999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      |.++++.|+|++|+..|+++++++|.+..-...+
T Consensus       151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        151 ASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            9999999999999999999999988765444333

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=6.3e-12  Score=111.81  Aligned_cols=129  Identities=36%  Similarity=0.549  Sum_probs=83.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCC
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN-----IELLTYLLSKGA---EVDSESD  154 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~~~---~~~~~~~  154 (458)
                      ....+..+.++++.++..+..+++.+++..|++++..+..|.||||+|+..++     .++++.|++.|.   ..+..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34445567788888888888888888888888888888888888888888888     666666666666   2222222


Q ss_pred             CC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683          155 AG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (458)
Q Consensus       155 ~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  211 (458)
                      .+ ||||+|+..|+.+++++|++.|.+++..+..|.|+++.|+..++.+++..+++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            22 5555555555555555555555555555555555555555555555555555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.45  E-value=2.1e-12  Score=107.77  Aligned_cols=126  Identities=18%  Similarity=0.163  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      .+.+.+...+|..|++.|++..|...+++||+.+|++..+|.-||..|.+.|+.+.|-+.|++|++++|++.+++.+.|.
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          411 ALRLLEKFDEAANAFYEGVTL--DPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      .++..|+|++|...|++|+..  .|.....+.+++.|-.+.|+++.++
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~  159 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE  159 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence            999999999999999999864  4456788999999999888877654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.45  E-value=1.1e-12  Score=133.96  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..++..|++++|+..|+++++++|.+...|+++|.++..+|++++|+..|+++++++|+++.+|+.+|.++.
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF  410 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ..|++++|+.+|+++++++|++..++..++.++.++++++
T Consensus       411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~  450 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA  450 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence            5555555555555555555555555555555555544443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=1.1e-13  Score=92.28  Aligned_cols=54  Identities=48%  Similarity=0.807  Sum_probs=31.9

Q ss_pred             HHHcC-CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683          207 LIQAG-ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (458)
Q Consensus       207 Ll~~g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  260 (458)
                      |+++| ++++.. ..|+||||+||..|+.++|++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 677766 7799999999999999999999999999999999999999987

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.44  E-value=1.8e-12  Score=110.59  Aligned_cols=124  Identities=15%  Similarity=0.192  Sum_probs=117.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      .+.+..+|...+..|+|.+|+..++++.++.|+++++|..+|.+|.+.|++++|...|.+|+++.|+.+..+.++|..++
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence            34455599999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK  457 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  457 (458)
                      -.|+++.|...+..+...-+.+..+..+++.+...++++.++++
T Consensus       180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            99999999999999998888899999999999999999887653

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=2e-12  Score=110.31  Aligned_cols=120  Identities=23%  Similarity=0.314  Sum_probs=107.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCcH
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETP   93 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~   93 (458)
                      -++|+.++-.||.+.+..|+....+         .+..|.+|.|+|..|+..|+.++|+.|++. |+|+|.. +..+.||
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~---------vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTp   82 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ---------VNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTP   82 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh---------hhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccH
Confidence            4679999999999999999986322         467899999999999999999999999997 9999864 6778999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 012683           94 LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS  144 (458)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  144 (458)
                      ||+|+..|+.++..+|++.|+.+...|.-|+|+-..|+.-|+.++|..+-+
T Consensus        83 LmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   83 LMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999999999999999999999999999999999886654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.43  E-value=1.6e-12  Score=132.76  Aligned_cols=122  Identities=16%  Similarity=0.156  Sum_probs=115.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+|++++|+..|+++++..|+++.++..++.++..+|+++++
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            999999999999999999999999999999999998887654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=4.4e-13  Score=89.06  Aligned_cols=54  Identities=46%  Similarity=0.778  Sum_probs=33.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF  110 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  110 (458)
                      |.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45677777777777777777766 6666666666777777777777777776664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1e-12  Score=120.96  Aligned_cols=118  Identities=31%  Similarity=0.355  Sum_probs=100.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  137 (458)
                      -.|.-|+..|.+++|+.++.. --|+...|..|.|+||.|+..||.+||++|++.|+++|..|.+|+||||+|+..+++.
T Consensus       552 aLLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            346779999999999999987 5677888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCC--CCCCCcHHHHH--HhCCCHHHHHHHHh
Q 012683          138 LLTYLLSKGAEVDS--ESDAGTPLIWA--AGHGQQEAVKVLLE  176 (458)
Q Consensus       138 ~~~~Ll~~~~~~~~--~~~~~t~l~~A--~~~~~~~~~~~Ll~  176 (458)
                      +++.|++.|+-+..  ..+..|+...+  ...|...|.++|..
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999977642  22333666554  23567788888864

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=2.1e-12  Score=110.96  Aligned_cols=109  Identities=10%  Similarity=0.095  Sum_probs=103.0

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhhh--HHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL-RLLEK--FDEAAN  423 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~  423 (458)
                      .++.++++..++++++.+|+++..|+.+|.+|..+|++++|+..|++|++++|+++..++.+|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567789999999999999999999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          424 AFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       424 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .++++++.+|++..+++.++.++.+.++++++
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A  163 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQA  163 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999988764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=4e-13  Score=127.85  Aligned_cols=123  Identities=20%  Similarity=0.180  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ...+.|...|+.+--+++++.||++|++|+.++|...-+|..+|.=+....+|+.|...|++|+..+|.+..|||.+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            34567888888888888888888888888888887766666666666666666666666666666666666666666666


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      |.+.++++.|+-.|++|+.++|.+....-.++.++.++|+.++
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~  541 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK  541 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence            6666666666666666666666666666666666666655443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=6.6e-12  Score=127.74  Aligned_cols=96  Identities=31%  Similarity=0.400  Sum_probs=89.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  137 (458)
                      +.|+.|+..|+.++++.|++. |++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            358899999999999999997 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhC-------CCCCCCCCC
Q 012683          138 LLTYLLSK-------GAEVDSESD  154 (458)
Q Consensus       138 ~~~~Ll~~-------~~~~~~~~~  154 (458)
                      ++++|+++       |++.+....
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~  186 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSF  186 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCcccc
Confidence            99999998       666655444

>PRK12370 invasion protein regulator; Provisional

Probab=99.38  E-value=4.2e-12  Score=127.35  Aligned_cols=123  Identities=17%  Similarity=0.063  Sum_probs=113.1

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .++.+...|..+...|++++|+..|++|++++|+++.+++++|.++...|++++|+..++++++++|.++.+++.++.++
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~  416 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT  416 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999998888888889


Q ss_pred             HHhhhHHHHHHHHHHhhccC-CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          413 RLLEKFDEAANAFYEGVTLD-PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +..|++++|+..++++++.+ |+++.++..++.++..+|+.+++
T Consensus       417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            99999999999999999774 78899999999999988887654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.9e-12  Score=106.07  Aligned_cols=127  Identities=21%  Similarity=0.214  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCch----------hHHHhHHHHHHhhCCHHHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDA----------TLLSNRSLCWIRLGQAEHALAD  390 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~~a~~~~~~~~~~~A~~~  390 (458)
                      +..+....+.++|+.+|+.|+|++|+..|..|+..        .|.++          .++.|.++|++..|+|-++++.
T Consensus       173 eKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh  252 (329)
T KOG0545|consen  173 EKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH  252 (329)
T ss_pred             HhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH
Confidence            33455678999999999999999999999999852        34443          5899999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhhhcC
Q 012683          391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN-KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +..++...|++.++||++|.++....+.++|..+|.++++++|.- +.....+..+..++...++.
T Consensus       253 ~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~e  318 (329)
T KOG0545|consen  253 CSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEE  318 (329)
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999999999999999999999999999999985 45566777777766555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=5.9e-12  Score=115.65  Aligned_cols=126  Identities=27%  Similarity=0.385  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      .+.+..++++...|..+|-.|++-.|.+.|+++|.++|.....|-.||.+|....+.++-..+|.+|..+||.++..||.
T Consensus       320 ~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyH  399 (606)
T KOG0547|consen  320 AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYH  399 (606)
T ss_pred             hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHh
Confidence            33455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      +|++++-+++|++|+.+|++++.++|++.-.+..+.-++.++.++.
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~  445 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA  445 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666655555555555443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.37  E-value=1.4e-11  Score=98.74  Aligned_cols=121  Identities=14%  Similarity=-0.017  Sum_probs=112.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +..+.+...|..+++.|++++|...|+-...++|.++..|..+|.|+..+++|++|+..|..|..+++++|..+|+.|.|
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      +..+|+.+.|+.+|..++. .|.+..........+..+++..
T Consensus       115 ~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~  155 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAE  155 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHccc
Confidence            9999999999999999998 6888888887777777665543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.9e-12  Score=116.88  Aligned_cols=122  Identities=16%  Similarity=0.210  Sum_probs=95.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ..++--.|-.|..-.+-..|++.|++|++++|.|..+||.+|++|.-++.+.=|+-+|++|+++.|++++.|..+|.||.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~  443 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE  443 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            34455566666777777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+++.++|+++|++|+.....+..++..++.+++++++..++
T Consensus       444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            888888888888888877766777888888888888776654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=7e-12  Score=114.44  Aligned_cols=123  Identities=15%  Similarity=0.172  Sum_probs=116.2

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      +...--|+-|.-+++-++|+.+|++|++++|....+|..+|.=|..|.+...|++.|++|+.++|.+.++||.+|++|.-
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            33455788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK  457 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  457 (458)
                      ++-..=|+-+|++|+++-|+|+..|..|+.|+.++++.+++.+
T Consensus       411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999999999999999999999999998877643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.36  E-value=1.1e-11  Score=97.86  Aligned_cols=109  Identities=17%  Similarity=0.121  Sum_probs=100.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  407 (458)
                      ++.++..|..++..|+|++|++.|.++++..|++   +.+++.+|.++.+.|++++|+..|++++...|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3567899999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      +|.++...|++++|+..|.++++..|++..+....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            99999999999999999999999999988765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=4.2e-12  Score=129.17  Aligned_cols=105  Identities=29%  Similarity=0.460  Sum_probs=80.0

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i  235 (458)
                      +.|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            3467777778888888888888887777777888888888888888888888888877766 567788888888888888


Q ss_pred             HHHHHHc-------CCCCCCCCCCCCcHHHHHH
Q 012683          236 IKCLLKA-------GADPNVTDEDGQKPIQVAA  261 (458)
Q Consensus       236 v~~Ll~~-------g~~~~~~~~~g~t~l~~A~  261 (458)
                      +++|+++       |++++..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            8888777       7777777777776655443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=3e-12  Score=90.28  Aligned_cols=66  Identities=27%  Similarity=0.381  Sum_probs=38.7

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-hHHHHHHHHHHhhccCC
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-KFDEAANAFYEGVTLDP  433 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p  433 (458)
                      +.+|+.+|.++...|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4455555555555555555555555555555555555555555555555 55555555555555554

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.35  E-value=1.2e-12  Score=87.40  Aligned_cols=56  Identities=45%  Similarity=0.666  Sum_probs=30.0

Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683           75 LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (458)
Q Consensus        75 ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  130 (458)
                      ||+..+.+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45552377888888888888888888888888888888888888888888888876

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.35  E-value=1.9e-12  Score=119.46  Aligned_cols=119  Identities=30%  Similarity=0.408  Sum_probs=113.4

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .++.+..+++.+|....|+.|+..|.+||+++|+++.++.+|+.++++.+.|..|+.++.+|++++|...++|+++|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ..++++.+|+..|++...+.|+++.+...+..|.....+
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988776654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.34  E-value=2.9e-12  Score=90.32  Aligned_cols=67  Identities=31%  Similarity=0.500  Sum_probs=64.8

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCC
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRP  399 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p  399 (458)
                      .++.+...|..++..|+|++|+..|+++++++|+++.+|+++|.|+.++| ++.+|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            36789999999999999999999999999999999999999999999999 79999999999999998

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.33  E-value=1.3e-11  Score=124.41  Aligned_cols=124  Identities=7%  Similarity=-0.058  Sum_probs=119.1

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..++.++..|....+.|.+++|...+..++++.|++..++.++|.++.+++++++|+..++++++.+|+++.+++.+|.+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +..+|+|++|...|++++..+|+++.++..++.+++.+|+..++
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999887654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=4e-12  Score=117.10  Aligned_cols=122  Identities=30%  Similarity=0.345  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .-+.-|..|+..|.+|+|+.++..+.+.         ...+..|-|+||-|+-.||.+||+|||+. |+++|..|.+|||
T Consensus       549 nPLaLLLDaaLeGEldlVq~~i~ev~Dp---------SqpNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWT  618 (752)
T KOG0515|consen  549 NPLALLLDAALEGELDLVQRIIYEVTDP---------SQPNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWT  618 (752)
T ss_pred             chHHHHHhhhhcchHHHHHHHHHhhcCC---------CCCCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCc
Confidence            3455689999999999999999886552         23456799999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHH--HcCCHHHHHHHHh
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPT-IPSNLGATALHHSA--GIGNIELLTYLLS  144 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~--~~~~~~~~~~Ll~  144 (458)
                      |||+|+..++..+++.|++.|+-+- ..-.++.|+..-+-  ..|..+|.++|..
T Consensus       619 PLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999997653 23346778776553  4578889888875

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=1.8e-11  Score=122.82  Aligned_cols=109  Identities=17%  Similarity=0.078  Sum_probs=99.0

Q ss_pred             hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 012683          346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF  425 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~  425 (458)
                      ..+++++|+..+++|++++|+++.++..+|.++...|++++|+..|++|++++|+++.+|+.+|.++...|++++|+..|
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          426 YEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       426 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +++++++|.++.+...+..++...+++++
T Consensus       396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~ee  424 (553)
T PRK12370        396 NECLKLDPTRAAAGITKLWITYYHTGIDD  424 (553)
T ss_pred             HHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence            99999999998776666655555665543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.9e-12  Score=120.04  Aligned_cols=135  Identities=17%  Similarity=0.155  Sum_probs=119.9

Q ss_pred             CCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683          321 KELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD  400 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  400 (458)
                      +..+.+.....+.=.+|+-.|.+|.+.++++.|.-.|++|++++|.+..+....|..+.++|+.++|++.+++|+.++|.
T Consensus       476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k  555 (638)
T KOG1126|consen  476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK  555 (638)
T ss_pred             HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence            33444444445666789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++-.-|.+|.+++.++++++|+..+++.-++-|++..++..++.++++++..+.+
T Consensus       556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            9999999999999999999999999999999999999999999999999876643

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=4.6e-12  Score=105.94  Aligned_cols=104  Identities=32%  Similarity=0.501  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      +++..-++.+.+.|+.+|....|..||.+|.+||.++|..+..|.|+|.||+++.+|+.+..++++|++++|+..+++|.
T Consensus         4 ~~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~f   83 (284)
T KOG4642|consen    4 PEMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYF   83 (284)
T ss_pred             cccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHH
Confidence            34456688899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +|.++.....|++|+..+.+|..+
T Consensus        84 lg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   84 LGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHH
Confidence            999999999999999999999543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.30  E-value=3.2e-11  Score=126.33  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=69.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+...|..+.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..|++|++++|+++.+++++|.++..
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      +|++++|+..|+++++++|+...+....+.++.+.
T Consensus       690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence            66666666666666666666655555555554443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.30  E-value=2.3e-11  Score=107.09  Aligned_cols=116  Identities=21%  Similarity=0.308  Sum_probs=106.6

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..++...+.|..++.+|++..|+..|..|++.+|++..++|.||.+|+.+|+-..|+.++++++++.|++..+-..+|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHH
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVE  447 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~  447 (458)
                      +...|++++|..+|++.++-+|.+   .+++..+..+.+
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence            999999999999999999999954   455555554433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=8.5e-12  Score=117.11  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=108.1

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE  416 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  416 (458)
                      ..-+|..|.-.|+|++|+.+|+.||...|++..+|..+|..+....+..+|+..|.+|+++.|.+.++.|++|.+++.+|
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG  512 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG  512 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccCCC----------cHHHHHHHHHHHHHhhhhh
Q 012683          417 KFDEAANAFYEGVTLDPE----------NKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       417 ~~~~A~~~~~~a~~~~p~----------~~~~~~~l~~~~~~~~~~~  453 (458)
                      .|++|.+.|..||.+.+.          +..+|..|..++..+++.+
T Consensus       513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            999999999999987654          1358889998888877765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.29  E-value=3.2e-11  Score=97.73  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=96.6

Q ss_pred             HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683          355 DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       355 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  434 (458)
                      +.|+++++..|++..+.+.+|.++.+.|++++|+..+++++.++|+++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhhhhcC
Q 012683          435 NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       435 ~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++..+..++.++...+++.++
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHH
Confidence            999999999999998887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.29  E-value=3.2e-11  Score=126.37  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=107.6

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      +......|++++|+..|+++++++|+ +.+++++|.++.++|++++|+..|+++++++|+++.+++++|.++...|++++
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            33444559999999999999999996 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      |+..|+++++++|+++.++.+++.++..+|+++++.
T Consensus       662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~  697 (987)
T PRK09782        662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ  697 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999877653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=6.3e-11  Score=89.09  Aligned_cols=99  Identities=33%  Similarity=0.508  Sum_probs=94.5

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      .+...|..++..|++++|+..++++++..|.++.+++.+|.++...+++++|++.+.++++..|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhccCCC
Q 012683          416 EKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~~p~  434 (458)
                      |+++.|...+.++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988874

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.27  E-value=2.4e-10  Score=86.36  Aligned_cols=104  Identities=25%  Similarity=0.251  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----PKA  404 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~  404 (458)
                      ...+....+--+|..+...|+.+.|++.|.+++.+.|..+++|.|+|+++.-.|+.++|++++.+|+.+..+-    -.+
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa  117 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA  117 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence            4456677788899999999999999999999999999999999999999999999999999999999996543    467


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                      |..+|.+|..+|+-+.|..+|..|-++.
T Consensus       118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  118 FVQRGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence            8999999999999999999998875543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.27  E-value=1.9e-11  Score=112.18  Aligned_cols=125  Identities=21%  Similarity=0.230  Sum_probs=105.8

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..+.+.|++++|+..|+++++++|+++.+...++.++...|+++++...+....+..|+++..+..+|.+
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      +..+|++++|+..|+++++.+|+++.....++.++.+.|+.+++.
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999987764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.27  E-value=9.9e-11  Score=98.88  Aligned_cols=105  Identities=23%  Similarity=0.326  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      ...+..+...|..+...|+|++|+..|+++++..|+.   ..+++++|.++.++|++++|+..+.+++++.|+++.++..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4667889999999999999999999999999987653   4789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh--------------HHHHHHHHHHhhccCCCc
Q 012683          408 EGAALRLLEK--------------FDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       408 ~a~~~~~~~~--------------~~~A~~~~~~a~~~~p~~  435 (458)
                      +|.++...|+              +++|++.+++++..+|++
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999887              788999999999999887

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.27  E-value=9.3e-11  Score=104.22  Aligned_cols=120  Identities=16%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--PDWPKACYREGAAL  412 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~  412 (458)
                      ..+...|..++..|++++|++.|+++++..|.+..+++++|.++...|++++|+..+.+++...  |.....++.+|.++
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555555432  33444555566666


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ...|++++|...|.+++..+|++...+..++.++...+++.+
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            666666666666666666666666666666666655555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.26  E-value=3.8e-11  Score=95.87  Aligned_cols=98  Identities=12%  Similarity=0.020  Sum_probs=91.7

Q ss_pred             HhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          359 QAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       359 ~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      ....+. ++..+..|.+|..+...|++++|.+.|+-+..++|.++..|+++|.++..+|+|++|+..|.+|+.++|+++.
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            345667 7889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCC
Q 012683          438 LVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       438 ~~~~l~~~~~~~~~~~~~~  456 (458)
                      ..++++.|+..+|+...+.
T Consensus       105 ~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363        105 APWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHH
Confidence            9999999999999876543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.25  E-value=7e-11  Score=105.58  Aligned_cols=109  Identities=22%  Similarity=0.225  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH---H
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK---A  404 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~  404 (458)
                      ...++.++..|..++..|+|++|+..|++++...|+++   .+++.+|.++.+.|++++|+..++++++..|+++.   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            45677899999999999999999999999999999876   58899999999999999999999999999998886   7


Q ss_pred             HHHHHHHHHHh--------hhHHHHHHHHHHhhccCCCcHHHH
Q 012683          405 CYREGAALRLL--------EKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       405 ~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      ++.+|.++...        |++++|++.|++++..+|++..+.
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence            99999999887        999999999999999999987654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.25  E-value=1.2e-10  Score=103.60  Aligned_cols=122  Identities=17%  Similarity=0.174  Sum_probs=109.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccC--CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFD--PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ...+...|..++..|++++|+..|+++++..  |.....++++|.++...|++++|...+.++++.+|+++.+++.+|.+
T Consensus        99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521        99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            3567788999999999999999999999864  45677899999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...|++++|+..+++++...|+++..+..+..+....++..++
T Consensus       179 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  222 (234)
T TIGR02521       179 YYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA  222 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999888888888888888877776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=5.7e-11  Score=109.44  Aligned_cols=108  Identities=24%  Similarity=0.217  Sum_probs=98.2

Q ss_pred             ccHHHHHHHHHHhhcc---CCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683          348 KDYLMAVDAYTQAIDF---DPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN  423 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~---~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~  423 (458)
                      +..+.++..+.+++..   +|. .+..|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3567788889999964   443 378899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          424 AFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       424 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .|+++++++|++..++.+++.++...++++++
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999888877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.24  E-value=1.5e-11  Score=90.25  Aligned_cols=82  Identities=27%  Similarity=0.460  Sum_probs=74.6

Q ss_pred             hhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683          346 KQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN  423 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~  423 (458)
                      +.|+|++|+..|+++++..|.  +...++.+|.|+++.|+|++|+..+++ .+.+|.++...+.+|.++..+|+|++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  577888999999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHh
Q 012683          424 AFYEG  428 (458)
Q Consensus       424 ~~~~a  428 (458)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.23  E-value=8.8e-11  Score=119.93  Aligned_cols=121  Identities=19%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             HHHHHHhhhHHHhhccHHH----HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLM----AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      +..+...|..++..|++++    |+..|+++++++|+++.++.++|.++.+.|++++|+..++++++++|+++.+++.+|
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La  325 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3445556666666676664    666677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .++...|++++|+..|++++..+|++......++.++...|+.++
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de  370 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE  370 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence            777777777777777777776667666555555666666665544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.23  E-value=3.3e-10  Score=95.34  Aligned_cols=106  Identities=21%  Similarity=0.208  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      ...+..+...|..++..|+|++|+..|.+++.+.|+.   +.+|+++|.++...|++++|+..+++|+.++|....++..
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3568889999999999999999999999999987663   4689999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HhhhHH-------HHHHHHHHhhccCCCcH
Q 012683          408 EGAALR-------LLEKFD-------EAANAFYEGVTLDPENK  436 (458)
Q Consensus       408 ~a~~~~-------~~~~~~-------~A~~~~~~a~~~~p~~~  436 (458)
                      +|.++.       .+|+++       +|+..|++++..+|++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999       666766       66666677888888654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.22  E-value=1.1e-10  Score=119.16  Aligned_cols=105  Identities=14%  Similarity=0.023  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..++..|++++|+..|+++++++|+++.++.++|.++.+.|++++|+..|++++..+|+++.+++.+|.+
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            44567888899999999999999999999999999999999999999999999999999999999999988878888999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcH
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~  436 (458)
                      +...|++++|+..|+++++.+|++.
T Consensus       362 l~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhChhhc
Confidence            9999999999999999999888754

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.2e-10  Score=102.13  Aligned_cols=108  Identities=36%  Similarity=0.499  Sum_probs=97.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      +.|+-+++.|+.||+..+|..|+..|++.|...-.    +..+|+|||.|..-+|+|..|+.++.+|++++|++.++|++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            58999999999999999999999999999987544    35789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      -|.|++.+.++.+|..+.+..+..+-+...+.
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999999999999999888877765444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.19  E-value=4e-10  Score=99.41  Aligned_cols=118  Identities=20%  Similarity=0.281  Sum_probs=108.3

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .-..++.+...++-.|++..||+..+..+++.|.++.++-.||.||...|+...|+.+.+.|.++..++.+++|..+..+
T Consensus       154 e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~  233 (504)
T KOG0624|consen  154 EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL  233 (504)
T ss_pred             HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            34456777778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +..|+.+.++...+++++++|+++.++-.+..+.+-.+
T Consensus       234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999988777666655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.17  E-value=1.3e-10  Score=80.71  Aligned_cols=64  Identities=28%  Similarity=0.344  Sum_probs=42.5

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      .+|..+++.|+|++|+..|+++++..|.++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3566666667777777777777776666667777777777777777777777777776666654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.16  E-value=7.4e-10  Score=109.23  Aligned_cols=131  Identities=15%  Similarity=0.166  Sum_probs=121.6

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK  403 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  403 (458)
                      +.........++.+...|+.+|.+|++++|.+.+.++|.++|..+.+|+.+|.+|...|+.++++..+-.|--++|.+.+
T Consensus       129 ~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e  208 (895)
T KOG2076|consen  129 SRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE  208 (895)
T ss_pred             CCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence            33334444568889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          404 ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .|..++.....+|.+..|.-+|.+|++.+|.+-+.......+++++|+...
T Consensus       209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~  259 (895)
T KOG2076|consen  209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR  259 (895)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence            999999999999999999999999999999999999999999998887543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.15  E-value=4.6e-10  Score=100.31  Aligned_cols=122  Identities=17%  Similarity=0.048  Sum_probs=108.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh---HHHhHHHHHHhh--------CCHHHHHHHHHHHHHhCCCCh
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT---LLSNRSLCWIRL--------GQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      ...+...|..++..|+|++|+..|+++++..|+++.   +++.+|.++...        |++++|++.+++++..+|++.
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            456788999999999999999999999999998876   799999999987        889999999999999999986


Q ss_pred             HHH-----------------HHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhhhhhcC
Q 012683          403 KAC-----------------YREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       403 ~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .++                 +.+|..+...|++++|+..|++++...|+.   +++++.++.++..+++..++
T Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A  222 (235)
T TIGR03302       150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA  222 (235)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence            543                 467889999999999999999999987764   58999999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.14  E-value=3.8e-11  Score=105.94  Aligned_cols=113  Identities=27%  Similarity=0.428  Sum_probs=107.6

Q ss_pred             CCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683          322 ELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW  401 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  401 (458)
                      ...++.++...++.+.+-.+..++..|.+++|++.|..+|++.|....+|..++.++++++++..|+++|..|+.++|+.
T Consensus       102 s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  102 SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence            45567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  434 (458)
                      .+.|-.+|.++..+|+|++|..++..+++++-+
T Consensus       182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999998744

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.14  E-value=9.3e-10  Score=98.24  Aligned_cols=111  Identities=11%  Similarity=-0.000  Sum_probs=98.3

Q ss_pred             HHHHHHhhhHH-HhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHH
Q 012683          334 AAEAKARGDEA-FKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACY  406 (458)
Q Consensus       334 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~  406 (458)
                      ....+..|..+ ++.|+|++|+..|++.++..|++   +.+++.+|.+|+..|++++|+..|.++++..|+   .+.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35567777776 66799999999999999999998   589999999999999999999999999998887   478999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          407 REGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       407 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      .+|.++..+|+++.|...|+++++..|+...+.....+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r  259 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR  259 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            99999999999999999999999999998876544333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.14  E-value=1.2e-10  Score=80.79  Aligned_cols=65  Identities=26%  Similarity=0.365  Sum_probs=60.9

Q ss_pred             HhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683          372 SNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       372 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  436 (458)
                      +.+|..+++.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999975

>PLN02789 farnesyltranstransferase

Probab=99.14  E-value=8e-10  Score=101.75  Aligned_cols=119  Identities=13%  Similarity=0.010  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhhhHHHhhc-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCH--HHHHHHHHHHHHhCCCChHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQK-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA--EHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      .+....+..+|..+...+ ++++++..+.++++.+|.+..+|++|+.+..++|+.  ++++..++++++++|.+..+|..
T Consensus        68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~  147 (320)
T PLN02789         68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSH  147 (320)
T ss_pred             chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHH
Confidence            345667888888888888 689999999999999999999999999999999974  78899999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      ++.++..+|+|++|++++.++++.+|.+..++...+.++..+
T Consensus       148 R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        148 RQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999988765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=2.7e-10  Score=95.32  Aligned_cols=121  Identities=16%  Similarity=0.170  Sum_probs=103.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREG  409 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a  409 (458)
                      ....++..++..|-+.|+-+.|-+.|++|+.++|++.+++.|.|.=+...|+|++|...|++|+..  -|..+..|-++|
T Consensus        67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G  146 (250)
T COG3063          67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG  146 (250)
T ss_pred             ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence            345567778888889999999999999999999999999999999999999999999999999874  466778899999


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      .|..+.|+++.|.++|+++++++|+.+.....+......-+++
T Consensus       147 ~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y  189 (250)
T COG3063         147 LCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY  189 (250)
T ss_pred             HHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence            9999999999999999999999999888887777776655544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.11  E-value=8.4e-10  Score=115.13  Aligned_cols=118  Identities=15%  Similarity=0.159  Sum_probs=111.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..+...|++++|+..|+++++++|.++.++..+|.++...|++++|+..++++++..|+++. ++.+|.++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~  127 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK  127 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence            4568889999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      ..|++++|+..|+++++.+|+++.++..++.++...+..
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence            999999999999999999999999999999887755443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.08  E-value=9.7e-10  Score=119.94  Aligned_cols=118  Identities=18%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH------
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA------  411 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~------  411 (458)
                      ...|..++..|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++++|++..++..++.+      
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            34566667777777777777777777777777777777777777777777777777777777766655444433      


Q ss_pred             ------------------------------------HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 ------------------------------------LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ------------------------------------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                                                          +...|++++|++.|+++++++|+++.++..++.++.+.++++++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                                33456777777777777777777777777777777666665543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=1.9e-09  Score=99.95  Aligned_cols=124  Identities=19%  Similarity=0.097  Sum_probs=116.1

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ......+-.+..++..+++++|...++..+...|+++.++..++.++++.++..+|.+.+++++.++|+.+-..+++|.+
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            34566778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...|++.+|+..++..+..+|+++..|..|++++..+|+..++
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            99999999999999999999999999999999999999886653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.06  E-value=8.8e-10  Score=120.24  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh--------------HHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT--------------LLSNRSLCWIRLGQAEHALADAKACRALR  398 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  398 (458)
                      .+..+...|..+++.|++++|+..|+++++.+|++..              ....+|.++.+.|++++|+..|+++++++
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3445566666666666666666666666666665432              11234556666666666666666666666


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      |+++.+++.+|.++...|++++|++.|+++++++|++..++..+..++.
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6666667777777777777777777777777777777666666666654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=5.7e-10  Score=105.09  Aligned_cols=131  Identities=15%  Similarity=0.181  Sum_probs=104.1

Q ss_pred             CCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------------------------------------
Q 012683          325 EVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------------------------------------  368 (458)
Q Consensus       325 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------  368 (458)
                      .......+.+++|..+|......++-..||..+++|++++|++.                                    
T Consensus       310 AAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l  389 (579)
T KOG1125|consen  310 AAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHL  389 (579)
T ss_pred             HHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhc
Confidence            33445556777788888888777777777777777777777643                                    


Q ss_pred             -----------------------------------------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          369 -----------------------------------------TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       369 -----------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                                                               .+...+|.+|...|+|++|++.|+.|++.+|++...|.+
T Consensus       390 ~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNR  469 (579)
T KOG1125|consen  390 VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNR  469 (579)
T ss_pred             cccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence                                                     366677788888888888888888888888888888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +|-.+..-.+.++|+..|++|+++.|+...++++++..+-.+|.+.++
T Consensus       470 LGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  470 LGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             hhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence            888888888888888888888888888888888888888888777654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.04  E-value=3.5e-09  Score=102.31  Aligned_cols=121  Identities=17%  Similarity=0.086  Sum_probs=76.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ...+...+..+.+.|+|++|++.|.++++..|.+.     ..+..+|.++.+.|++++|+..|+++++.+|+...+++.+
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  220 (389)
T PRK11788        141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL  220 (389)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence            34455566666666666666666666666655432     2445666666666777777777777777667666667777


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhhhc
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPEN-KELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~  454 (458)
                      |.++...|++++|++.|++++..+|++ ..++..++.++...++.++
T Consensus       221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            777777777777777777766666654 3445556666665555443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.03  E-value=2.7e-09  Score=114.38  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=109.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.+..+++.+|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  202 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL  202 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            44667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...|++++|+..|++++..+|++..++..++.++...++++++
T Consensus       203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A  246 (899)
T TIGR02917       203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA  246 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999998888888888777765543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN02789 farnesyltranstransferase

Probab=99.03  E-value=3.7e-09  Score=97.42  Aligned_cols=111  Identities=15%  Similarity=0.070  Sum_probs=103.3

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH--HH
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALRLLEKF--DE  420 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~--~~  420 (458)
                      +...+.+++|+..+.++|+++|.+..+|..|+.++..+| .+++|+..++++++.+|++..+|++++.++..+|+.  ++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            556789999999999999999999999999999999999 689999999999999999999999999999999974  78


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ++..+.+++..+|.+-.+|...+-++..++++++
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence            8999999999999999999999999998877653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.4e-09  Score=92.46  Aligned_cols=118  Identities=17%  Similarity=0.058  Sum_probs=104.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      .+++.|...|..|+..|++..|...|.+|+++.|+++.++..+|.+++...   .-.+|...+++|+++||++..+.+.+
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            456779999999999999999999999999999999999999999887754   46789999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      |+.++..|+|.+|...++..++..|.+..-...+.....+.
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA  274 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence            99999999999999999999999887765555555444433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.02  E-value=2.8e-09  Score=114.33  Aligned_cols=121  Identities=23%  Similarity=0.264  Sum_probs=104.6

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..+...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.++.
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV  848 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            34566777888888888888888888888888888888888888888888 77888888888888888888888999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|+..|+++++.+|.++.++..++.++...|+..++
T Consensus       849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  890 (899)
T TIGR02917       849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA  890 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999998888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.01  E-value=4.4e-09  Score=101.63  Aligned_cols=106  Identities=20%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      .+...|..+.+.|++++|++.|+++++.+|.+ ..++..++.+|.+.|++++|+..++++++..|+... +..+|.++..
T Consensus       216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~  294 (389)
T PRK11788        216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEE  294 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHH
Confidence            33444444445555555555555555444433 233444444555555555555555555555444332 2444555555


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      .|++++|+..|+++++.+|++..+...+
T Consensus       295 ~g~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        295 QEGPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             hCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            5555555555555555555444443333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.01  E-value=4.1e-09  Score=106.56  Aligned_cols=104  Identities=13%  Similarity=0.046  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+++....+..+++.+++++|...+++++..+|+++.+++.+|.++.++|+|++|+..|++++..+|+++.++..+|.+
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~  197 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS  197 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCc
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      +...|+.++|...|+++++...+-
T Consensus       198 l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        198 LTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHcCCHHHHHHHHHHHHHhhCcc
Confidence            999999999999999999885543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=4.7e-09  Score=98.68  Aligned_cols=113  Identities=21%  Similarity=0.268  Sum_probs=102.9

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      +.+.|.+.|..+.|.+|+..|+.++...+.       ....+.|+|.++.+++++++|+..+++|+.+.|.++.+|-..|
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence            567889999999999999999999953222       3457999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      .+|..+|+++.|++.|.+++.+.|++..+...|+.+.+..
T Consensus       497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~  536 (611)
T KOG1173|consen  497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS  536 (611)
T ss_pred             HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999887753

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.99  E-value=3.5e-09  Score=90.72  Aligned_cols=118  Identities=20%  Similarity=0.218  Sum_probs=109.8

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK  417 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  417 (458)
                      ...+..+...|+-+++....+++....|.+..+..-.|...+..|+|.+|+..+.+|..++|++.++|..+|.+|.+.|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            56777888889999999999998889999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          418 FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +++|...|.+++++.|+++.+..+++..+.--++...+
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A  187 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA  187 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence            99999999999999999999999999998877776544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=2.2e-09  Score=98.12  Aligned_cols=122  Identities=20%  Similarity=0.199  Sum_probs=115.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +.++.++|+..|..|++++|.+.|.+|+.-+.....++||.|..+.++|+.++|++.|-+.-.+=-++.++++.++.+|.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999998888889999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+.+...|+++|.++..+-|+++.+...|+.++.+-|+..++
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            999999999999999999999999999999999988776543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.98  E-value=3.1e-09  Score=75.69  Aligned_cols=68  Identities=32%  Similarity=0.512  Sum_probs=44.4

Q ss_pred             hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ..+++.++|++|++.+++++.++|+++.+|+.+|.++.++|++.+|+.+++++++.+|+++.+..-++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666665554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.97  E-value=1.6e-09  Score=75.99  Aligned_cols=65  Identities=20%  Similarity=0.241  Sum_probs=37.8

Q ss_pred             HhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683          379 IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       379 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  443 (458)
                      ++.|++++|++.|+++++.+|++..+++.+|.++...|++++|...+.+++..+|+++.++..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34555666666666666666666666666666666666666666666666666666555555444

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.96  E-value=3.3e-09  Score=74.34  Aligned_cols=68  Identities=21%  Similarity=0.243  Sum_probs=62.5

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +++.|+|++|++.|++++..+|++..+++.+|.|+++.|++++|...+.+++..+|+++..+.-++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46889999999999999999999999999999999999999999999999999999998877776653

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.93  E-value=6.4e-09  Score=101.11  Aligned_cols=116  Identities=22%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      ..+..+...+..++|..++.+|-.++|..+..|+.+|.++...|.+.+|.+.|..|+.++|+++....-+|.++.+.|+.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~  734 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP  734 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence            33333444455566666666666666666666777777776677777777777777777777666666677777666666


Q ss_pred             HHHHH--HHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          419 DEAAN--AFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       419 ~~A~~--~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .-|..  .+..+++++|.++++|+.++.+++++|+.++
T Consensus       735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            66666  6666666677777777777766666666554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.93  E-value=6e-09  Score=74.15  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          374 RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      +..+|...++|++|++.+++++.++|+++..++.+|.++...|+|++|++.|.++++..|+++.+......
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            35688999999999999999999999999999999999999999999999999999999999988766554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.92  E-value=2.7e-08  Score=86.54  Aligned_cols=111  Identities=20%  Similarity=0.134  Sum_probs=101.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  407 (458)
                      ++.+.+.|..+++.|+|.+|...|...+...|++   +.++|-+|.+++.+|+|++|...|..+++-.|++   |++++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            3448999999999999999999999999999986   6899999999999999999999999999988765   688999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      +|.+..++|+.++|...|+++++..|+...+......
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            9999999999999999999999999999887755443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.92  E-value=4.4e-08  Score=77.09  Aligned_cols=106  Identities=19%  Similarity=0.202  Sum_probs=96.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~  407 (458)
                      ++.+...|...+++|+|.+|++.|+......|..   ..+...++.+|++.+++++|+..+++-+++.|+++   -++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4678999999999999999999999999887764   57899999999999999999999999999999885   57899


Q ss_pred             HHHHHHHhhh---------------HHHHHHHHHHhhccCCCcHHHH
Q 012683          408 EGAALRLLEK---------------FDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       408 ~a~~~~~~~~---------------~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      +|.+++....               ...|...|+..+...|+.+-+-
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            9999999987               8999999999999999987654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=3.8e-09  Score=96.98  Aligned_cols=94  Identities=35%  Similarity=0.509  Sum_probs=85.1

Q ss_pred             CCCCCCCCc------HHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCC
Q 012683          182 NAETEDNIT------PLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG  253 (458)
Q Consensus       182 ~~~~~~~~t------~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g  253 (458)
                      ..+|.+|.+      -||..+..|+.++.-.|+..|+++|+.  ..|.||||+|+..|+..-+++|+=+|+|+...|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            345555544      489999999999999999999999988  789999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHhhcCC
Q 012683          254 QKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       254 ~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      +||+.+|-..||.++.+-|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999998888754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.90  E-value=1.6e-08  Score=105.57  Aligned_cols=108  Identities=12%  Similarity=-0.011  Sum_probs=102.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ..+....+|..+...|++++|++.+++++...|.++.+++.+|.++...|++++|++.+++++.++|+++.+++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVF  440 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~  440 (458)
                      ..+|++++|+..++++++..|+++.+..
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999999997654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.89  E-value=2.1e-08  Score=81.28  Aligned_cols=98  Identities=24%  Similarity=0.277  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh--
Q 012683          350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ----------AEHALADAKACRALRPDWPKACYREGAALRLLEK--  417 (458)
Q Consensus       350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~--  417 (458)
                      |+.|.+.++.....+|.+++.+++-|.+++.+.+          +++|+.-|++|+.++|+..++++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999999998888877643          5688999999999999999999999999998885  


Q ss_pred             ---------HHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          418 ---------FDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       418 ---------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                               |+.|..+|++|+..+|++..++..|..+.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence                     899999999999999999999998887743

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=1e-08  Score=84.93  Aligned_cols=112  Identities=16%  Similarity=0.158  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ++++.-++++|..|-.-|-+.-|.-.|++++.+.|.-++++..+|.-+...|+|+.|.+.|+.++++||.+--++.++|.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      +++--|+|.-|.+.+.+..+-+|++|---.++
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence            99999999999999999999999987544333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.88  E-value=5.4e-09  Score=101.09  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=109.3

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      +.+..|...+.+++|+++...++..++++|-....||++|.|..+++++..|.++|.+++.++|++..+|.+++.+|..+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence            34455566677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          416 EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++-.+|...+++|++-+-++.+.|.++-.+...++.++++
T Consensus       567 ~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  567 KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            9999999999999999988888988888877777766543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.88  E-value=1.1e-08  Score=86.11  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=95.6

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCc--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHh
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSD--ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLL  415 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~  415 (458)
                      .+.+|-...|..+...+...+...+.+  ..+|+++|.++...|++++|+..|++++.+.|++   +.+|+++|.++...
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence            445666777888888887776666655  6778999999999999999999999999997764   45899999999999


Q ss_pred             hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          416 EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      |++++|+..|++++.++|.....+..++.++..++
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999998444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.88  E-value=5.2e-09  Score=96.10  Aligned_cols=121  Identities=20%  Similarity=0.204  Sum_probs=97.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccC--CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFD--PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ..+......+...++++++.+.+.++....  +.++.+|+.+|.++.+.|++++|++.+++|++++|+++.+...++.++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l  190 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL  190 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            445556677888999999999999977655  678899999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ...|+++++.+.+....+..|+++..+..++.++..+|+.+++
T Consensus       191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            9999999988888888888899999999999999999887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.86  E-value=4.2e-08  Score=91.18  Aligned_cols=115  Identities=18%  Similarity=0.143  Sum_probs=106.3

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      -.+-..+..++..+++.+|++.+++++.++|..+.++.++|.++++.|++.+|+..+...+.-+|+++..|..+|++|..
T Consensus       341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         341 YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            33456788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      +|+-.+|+..+-+.+.+...-.++...+..+.+++
T Consensus       421 ~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         421 LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999888888887777776665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.86  E-value=4.4e-08  Score=75.91  Aligned_cols=96  Identities=19%  Similarity=0.022  Sum_probs=87.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACYRE  408 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~  408 (458)
                      +.+++.|..+-..|+.++|+..|+++++.....   ..++..+|.++..+|++++|+..+++++.-.|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            457889999999999999999999999975443   578999999999999999999999999999888   88888999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhc
Q 012683          409 GAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +.++...|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988874

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.86  E-value=2.2e-08  Score=103.25  Aligned_cols=120  Identities=10%  Similarity=0.015  Sum_probs=97.6

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ...+..+...++.|+|++|++.|+++++.+|.++.....++.++...|++++|+.++++++..+|.+...+..+|.++..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999864444888888888999999999999994445555555555778999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .|+|+.|++.|+++++.+|+++.++..+..++...++..+
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e  154 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV  154 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence            9999999999999999999998888877777666655443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=7.3e-09  Score=90.48  Aligned_cols=86  Identities=16%  Similarity=0.139  Sum_probs=79.9

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +-+-|.-.++.++|.+|+.-|.+||+++|.++..|-++|.+|.++|+|+.|+++.+.|+.+||....+|..|+.++..++
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            44557778889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhcCC
Q 012683          451 KFHGTD  456 (458)
Q Consensus       451 ~~~~~~  456 (458)
                      ++.++.
T Consensus       164 k~~~A~  169 (304)
T KOG0553|consen  164 KYEEAI  169 (304)
T ss_pred             cHHHHH
Confidence            877653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.85  E-value=1e-07  Score=82.54  Aligned_cols=118  Identities=22%  Similarity=0.205  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KAC  405 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~  405 (458)
                      ..++.+...|..++..|+|.+|+..|++.+...|..   +.+.+.+|.++.+.|++.+|+..+++.++..|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            457889999999999999999999999999998875   57899999999999999999999999999999875   689


Q ss_pred             HHHHHHHHHhhh-----------HHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHh
Q 012683          406 YREGAALRLLEK-----------FDEAANAFYEGVTLDPENK---ELVFAFREAVEAG  449 (458)
Q Consensus       406 ~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~  449 (458)
                      |.+|.+++...+           ..+|+..|+..++..|+.+   ++...+..+..++
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence            999999876643           4589999999999999875   4455555554444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.84  E-value=1.1e-07  Score=84.55  Aligned_cols=117  Identities=13%  Similarity=0.059  Sum_probs=97.6

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhH---HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATL---LSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACY  406 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~  406 (458)
                      .++.+...|..++.+|+|++|++.|++++...|..+.+   .+.+|.++++.+++++|+..+++.+++.|++   +.++|
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            45668899999999999999999999999999988655   4899999999999999999999999999887   46789


Q ss_pred             HHHHHHHHhh------------------hHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHh
Q 012683          407 REGAALRLLE------------------KFDEAANAFYEGVTLDPENK---ELVFAFREAVEAG  449 (458)
Q Consensus       407 ~~a~~~~~~~------------------~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~  449 (458)
                      .+|.++..++                  .-..|+..|+..++..|+.+   ++...+..+..++
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l  174 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL  174 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence            9998875554                  23578899999999999874   5555555555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.84  E-value=1.1e-08  Score=95.36  Aligned_cols=71  Identities=15%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhH---HHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATL---LSNRSLCWIRLGQAEHALADAKACRALR  398 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~~  398 (458)
                      +.....++++.++|..++..|+|++|+..|++|++++|++..+   |+|+|.||.++|++++|+.++++|+++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3455778999999999999999999999999999999999854   9999999999999999999999999983

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.83  E-value=4e-08  Score=73.42  Aligned_cols=85  Identities=27%  Similarity=0.352  Sum_probs=80.3

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      +++++|.++...|++++|+..++++++..|.++.+++.+|.++...+++++|++.|++++...|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhhhc
Q 012683          450 RKFHG  454 (458)
Q Consensus       450 ~~~~~  454 (458)
                      ++...
T Consensus        82 ~~~~~   86 (100)
T cd00189          82 GKYEE   86 (100)
T ss_pred             HhHHH
Confidence            87654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=8.9e-09  Score=96.12  Aligned_cols=125  Identities=27%  Similarity=0.385  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKL-DVDTQDEDG   90 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g   90 (458)
                      ++..+.|..|+..+|+=.++.....    |..     +-.++.+..|.||+|+..|+-++|++++++.+. .++..+..|
T Consensus       864 ppiseeil~av~~~D~~klqE~h~~----gg~-----ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~g  934 (1004)
T KOG0782|consen  864 PPISEEILRAVLSSDLMKLQETHLN----GGS-----LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETG  934 (1004)
T ss_pred             CCccHHHHHHHHhccHHHHHHHHhc----CCc-----eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhh
Confidence            3455679999999998766665543    222     245778889999999999999999999998433 256677899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (458)
                      .|+||-|+..++-.++++|++.|+.....|..|.||-..|-..|+.++.-+|-+.
T Consensus       935 et~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  935 ETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999888653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.80  E-value=1.9e-07  Score=76.38  Aligned_cols=124  Identities=19%  Similarity=0.088  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKA  404 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~  404 (458)
                      ...+...+......+..+++..+...+++.++-.|+.   ..+.+.+|.++...|++++|+..|++++...|+.   +.+
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            4556777777788888889988888888888888887   5678888999999999999999999999877655   467


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+++|.++...|+|++|+..+.. +.-.+-.+.+...++.++.+.|+..++
T Consensus        88 ~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A  137 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA  137 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence            88899999999999999998865 344455677888888888888877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.80  E-value=2.3e-08  Score=94.42  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=80.6

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +...|...+..|+|++|+..|++|++++|+++.+|+.+|.++..+|++++|+.++++++.++|+++.+++.++.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcC
Q 012683          451 KFHGT  455 (458)
Q Consensus       451 ~~~~~  455 (458)
                      ++.++
T Consensus        85 ~~~eA   89 (356)
T PLN03088         85 EYQTA   89 (356)
T ss_pred             CHHHH
Confidence            87754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=3e-08  Score=93.35  Aligned_cols=118  Identities=18%  Similarity=0.225  Sum_probs=106.7

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-------CCCChHHHHHHHH
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-------RPDWPKACYREGA  410 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~~a~  410 (458)
                      .-.|..|.+-++++-|-.+|.+|+.+.|.+|-++..+|.+.+..+.|.+|+.+|+.++..       .+.|...+.++|.
T Consensus       384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH  463 (611)
T KOG1173|consen  384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH  463 (611)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence            345667778899999999999999999999999999999999999999999999999943       2346778999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++.+++.+++|+.+|++++.+.|.+..++..++.++..+|+.+.+
T Consensus       464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA  508 (611)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence            999999999999999999999999999999999999999887653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=7.6e-09  Score=58.53  Aligned_cols=28  Identities=61%  Similarity=0.905  Sum_probs=21.0

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683          220 GATPLHIAADIGSTEIIKCLLKAGADPN  247 (458)
Q Consensus       220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  247 (458)
                      |+||||+||+.|+.++|++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            6777777777777777777777777765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.80  E-value=4.1e-08  Score=95.63  Aligned_cols=107  Identities=21%  Similarity=0.184  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHH--HHHHHHHhCCCChHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALA--DAKACRALRPDWPKACYRE  408 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~a~~~~p~~~~~~~~~  408 (458)
                      .--+..++..|..+..+|++.+|.+.|..|+.++|+++.+..-+|.++.+.|+..-|..  .+..|+++||.++++||.+
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34456689999999999999999999999999999999999999999999999888888  9999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      |.++..+|+.+.|.++|..|+++++.+|.
T Consensus       761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  761 GEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999988774

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.80  E-value=1e-08  Score=99.94  Aligned_cols=86  Identities=34%  Similarity=0.465  Sum_probs=80.9

Q ss_pred             hhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012683           46 KTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGA  124 (458)
Q Consensus        46 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  124 (458)
                      .+..+++|..|.|+||+++..|...++++||++ |+++...|. .|+||||-|+..|+++|+-.||++|....+.|+.|.
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL  120 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence            456789999999999999999999999999998 999998885 699999999999999999999999999999999999


Q ss_pred             cHHHHHHH
Q 012683          125 TALHHSAG  132 (458)
Q Consensus       125 t~L~~A~~  132 (458)
                      +||.+-++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            99998876

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.79  E-value=1.6e-05  Score=82.81  Aligned_cols=363  Identities=13%  Similarity=0.105  Sum_probs=199.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL-HAARQGHTE----TAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      ++.+..-+..|+++-+..+++...    .+|..-++.|. .-+..|..+    +++.+++.|..++...  -.+.|...+
T Consensus       162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t--~~~ll~a~~  235 (697)
T PLN03081        162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT--FVVMLRASA  235 (697)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh--HHHHHHHHh
Confidence            345666667777777777776532    12333344443 334455533    3333444554443211  122334444


Q ss_pred             HcCCHHHHHHH----HhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHH-HHHHcCCHH----
Q 012683          132 GIGNIELLTYL----LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL-SAVAAGSLT----  202 (458)
Q Consensus       132 ~~~~~~~~~~L----l~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~-~a~~~~~~~----  202 (458)
                      ..|..+..+.+    ++.|...+.. ...+.+..-+..|..+-...+.+.-.   ..|...++.+. ..+..|..+    
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~d~~-~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~  311 (697)
T PLN03081        236 GLGSARAGQQLHCCVLKTGVVGDTF-VSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALC  311 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCccce-eHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHH
Confidence            45555544443    3444333211 11245666677777776666655321   12333333333 345556653    


Q ss_pred             HHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHH----HHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          203 CLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKC----LLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       203 ~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      +++.+.+.|..++... -.+.+...+..|.++-.+.    +++.|..++..-  +.+-++.-+..|+.+-+.-+++.-..
T Consensus       312 lf~~M~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~--~~~Li~~y~k~G~~~~A~~vf~~m~~  388 (697)
T PLN03081        312 LYYEMRDSGVSIDQFT-FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA--NTALVDLYSKWGRMEDARNVFDRMPR  388 (697)
T ss_pred             HHHHHHHcCCCCCHHH-HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee--hHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence            3344456666665331 1234555556676654444    445565554332  23456666778887777666543221


Q ss_pred             CCCCCCcchhhHHHHHHhhcc---chhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHH
Q 012683          279 DPSIPKWTVDGILEYMQSESG---KQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVD  355 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  355 (458)
                       +++..|..  .+. ..+..+   +-++....+.+.+..++                 ...+...-..+.+.|.+++|.+
T Consensus       389 -~d~~t~n~--lI~-~y~~~G~~~~A~~lf~~M~~~g~~Pd-----------------~~T~~~ll~a~~~~g~~~~a~~  447 (697)
T PLN03081        389 -KNLISWNA--LIA-GYGNHGRGTKAVEMFERMIAEGVAPN-----------------HVTFLAVLSACRYSGLSEQGWE  447 (697)
T ss_pred             -CCeeeHHH--HHH-HHHHcCCHHHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHHHhcCCcHHHHHH
Confidence             12222211  111 111111   11222223333332221                 2235556667778888888888


Q ss_pred             HHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          356 AYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       356 ~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      .|+...+..+-  +...|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|
T Consensus       448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p  525 (697)
T PLN03081        448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGP  525 (697)
T ss_pred             HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            88887764332  3456777888888889999998887764 2334 345688888888888999999988888888888


Q ss_pred             CcHHHHHHHHHHHHHhhhhhcC
Q 012683          434 ENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       434 ~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++...+..+..++.+.|+++++
T Consensus       526 ~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        526 EKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             CCCcchHHHHHHHHhCCCHHHH
Confidence            8887888888888877776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.78  E-value=6.8e-08  Score=78.99  Aligned_cols=95  Identities=22%  Similarity=0.160  Sum_probs=83.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ..+.+..|..++..|+|++|+..|++++...|+.   +.+.+.+|.+++..|++++|+..++. +.-.+..+.++..+|.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            4567889999999999999999999999987664   46888999999999999999999966 4455566788889999


Q ss_pred             HHHHhhhHHHHHHHHHHhh
Q 012683          411 ALRLLEKFDEAANAFYEGV  429 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~  429 (458)
                      ++...|++++|+..|++|+
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999885

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=9e-08  Score=84.35  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=96.6

Q ss_pred             cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh---hHHHHHHHH
Q 012683          349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE---KFDEAANAF  425 (458)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~  425 (458)
                      ..+.-+.-++..+..+|++..-|..+|.+|+..|++..|...|.+|+++.|++++.+..+|.+++...   .-.++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            34556667888899999999999999999999999999999999999999999999999999987665   456788899


Q ss_pred             HHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          426 YEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       426 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +++++++|++..+.+.|+..+.+.+++.++
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A  246 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEA  246 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999998887653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=1.8e-08  Score=88.61  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=104.0

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhhh
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP---DWPKACYREGAALRLLEK  417 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~a~~~~~~~~  417 (458)
                      |..||=.++.+-|+.+|.+.+.+.-.+++++.|+|.|.+..++++-++..|.+|+...-   .-.+.||++|++....|+
T Consensus       331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence            45567788889999999999999989999999999999999999999999999998754   346899999999999999


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          418 FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +.-|..+|+-|+..+|++.+++.+|+.+..+-|+..++
T Consensus       411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            99999999999999999999999999999888877654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.76  E-value=1e-07  Score=80.41  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             HHHHHhhccCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683          355 DAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGV  429 (458)
Q Consensus       355 ~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~  429 (458)
                      +.+...+...+  ....+++++|.++...|++++|+..|++++++.|+.   ..+++.+|.++..+|++++|+..|++++
T Consensus        20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   99 (172)
T PRK02603         20 DLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL   99 (172)
T ss_pred             HHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34445455443  456789999999999999999999999999987764   4689999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHHHhhhh
Q 012683          430 TLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       430 ~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      ...|++...+..++.++..+++.
T Consensus       100 ~~~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603        100 ELNPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HhCcccHHHHHHHHHHHHHcCCh
Confidence            99999999999999999887664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.76  E-value=7.9e-08  Score=91.96  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=114.8

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..++.++...+..++|...+...++.++-.|.+++.+...|..+..+|+-++|....+.+++.|+.+...|.-+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            56888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      -.+|++|+++|+.|++++|+|.+++..++.+..+++++..
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999988754

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.75  E-value=4.9e-09  Score=102.11  Aligned_cols=82  Identities=27%  Similarity=0.358  Sum_probs=77.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683          181 PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ  258 (458)
Q Consensus       181 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~  258 (458)
                      .|..|..|+++||+++..+..++++||+++|+++...  ..|.||||-|+..|+++++-.||.+|+....+|++|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            4677899999999999999999999999999999988  67999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 012683          259 VAAA  262 (458)
Q Consensus       259 ~A~~  262 (458)
                      .-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8776

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.75  E-value=7.5e-08  Score=75.79  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=79.7

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHH
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFA  441 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  441 (458)
                      +.+++.+|..+.+.|++++|+..|.++++..|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999999887   5789999999999999999999999999998885   678999


Q ss_pred             HHHHHHHhhhhhcC
Q 012683          442 FREAVEAGRKFHGT  455 (458)
Q Consensus       442 l~~~~~~~~~~~~~  455 (458)
                      ++.++..+++..++
T Consensus        82 ~~~~~~~~~~~~~A   95 (119)
T TIGR02795        82 LGMSLQELGDKEKA   95 (119)
T ss_pred             HHHHHHHhCChHHH
Confidence            99999988776543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.74  E-value=1.4e-08  Score=93.05  Aligned_cols=97  Identities=23%  Similarity=0.348  Sum_probs=86.7

Q ss_pred             hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHH
Q 012683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHH  129 (458)
Q Consensus        51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~  129 (458)
                      ..+.++...+.+|+..|++..++.+.-. |.+++.+|.+..|+||+|+..|+.+++++|++ .+.+++.+|.||+|||.-
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            3445667789999999999999988766 99999999999999999999999999999997 468899999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCC
Q 012683          130 SAGIGNIELLTYLLSKGAE  148 (458)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~  148 (458)
                      |...+|.+++++|-+.-..
T Consensus       580 A~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             hHhcCcHHHHHHHHHHhcc
Confidence            9999999999999876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.74  E-value=3e-08  Score=92.55  Aligned_cols=70  Identities=21%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          362 DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA---CYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       362 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +.+|+++.+++|+|.+|.++|+|++|+..|++|++++|++..+   ||++|.+|..+|++++|+++|++|+++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999999999965   999999999999999999999999997

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=3.8e-07  Score=77.72  Aligned_cols=113  Identities=17%  Similarity=0.098  Sum_probs=85.0

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-  416 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-  416 (458)
                      +.+--.....|+--+||+.+...++..+.|.++|..++..|+.+|+|++|.-.+++++-+.|.++..+.++|.+++-.| 
T Consensus       124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            3344444455666677777777777777777888888888888888888888888888888888888888888877666 


Q ss_pred             --hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          417 --KFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       417 --~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                        +++-|.++|.++++++|.+..+++.+-.+...+-
T Consensus       204 ~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  204 AENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence              6777888888888888877777777666655554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=1.9e-08  Score=56.93  Aligned_cols=28  Identities=54%  Similarity=0.832  Sum_probs=15.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 012683           90 GETPLLHAARQGHTETAKYLFEHGANPT  117 (458)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~  117 (458)
                      |+||||+|+..|+.++|++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.2e-08  Score=93.49  Aligned_cols=103  Identities=37%  Similarity=0.468  Sum_probs=87.8

Q ss_pred             CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683            3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (458)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~   82 (458)
                      |.-.....-....-.++.|++.||+..++.+.-.    +     ......|.+..|+||+||..|+++++++|++..+.+
T Consensus       495 PRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~----g-----~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~  565 (622)
T KOG0506|consen  495 PRREGGPRENDTVINVMYAAKNGDLSALRRFALQ----G-----MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD  565 (622)
T ss_pred             cccccCcccccchhhhhhhhhcCCHHHHHHHHHh----c-----ccccccccccchhheeecccCceeHHHHHHHHHcCC
Confidence            3333334445566789999999999999998755    2     235778999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGA  114 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  114 (458)
                      ++.+|.+|.|||.-|...+|.+++++|-+...
T Consensus       566 ~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999999999999999987643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.73  E-value=2e-08  Score=58.64  Aligned_cols=33  Identities=55%  Similarity=0.787  Sum_probs=28.2

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCC
Q 012683          219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDE  251 (458)
Q Consensus       219 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~  251 (458)
                      +|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478899999999999999999999988888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.9e-08  Score=89.99  Aligned_cols=106  Identities=34%  Similarity=0.433  Sum_probs=99.4

Q ss_pred             CCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683          321 KELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD  400 (458)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  400 (458)
                      .......++..++++..+.+|+.+++..+|.+|+..|+.||+++|++...|.+++.+++..++|++|.-++++.++++|.
T Consensus        36 ~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~  115 (486)
T KOG0550|consen   36 SPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG  115 (486)
T ss_pred             CccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC
Confidence            33445666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683          401 WPKACYREGAALRLLEKFDEAANAFY  426 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~~~~~A~~~~~  426 (458)
                      +++++.+.++++..+++..+|.+.|+
T Consensus       116 ~~k~~~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen  116 FSKGQLREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             ccccccchhhhhhhhHHHHHHHHHhh
Confidence            99999999999999999999997776

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.70  E-value=1.8e-07  Score=96.62  Aligned_cols=116  Identities=17%  Similarity=0.184  Sum_probs=102.5

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+...|..+...|+|++|++.|+++++.+|+++.+++.++..+...++.++|++.++++...+|.... +..++.++..
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~  181 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRA  181 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHh
Confidence            445566889999999999999999999999999999999999999999999999999999999998555 3556666666


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      .+++.+|++.|+++++.+|++.++...+..++...+-
T Consensus       182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            7888779999999999999999999998888776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.70  E-value=2.2e-07  Score=81.92  Aligned_cols=121  Identities=12%  Similarity=0.045  Sum_probs=88.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ..++...-..|-+..+|++||+.-.+...+.|..     +.+|+.+|+.+....+++.|...+.+|++-+|+..++-.-+
T Consensus       141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l  220 (389)
T COG2956         141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIIL  220 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh
Confidence            3455666667777777777777777777776654     35677777777777777777777777777777777777777


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHHhhhhhc
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPEN-KELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~  454 (458)
                      |.++...|+|+.|++.++.+++.||+. +++...|..||.++++..+
T Consensus       221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            777777777777777777777777775 5667777777777776543

>TIGR00540 hemY_coli hemY protein

Probab=98.70  E-value=4.4e-07  Score=87.96  Aligned_cols=123  Identities=14%  Similarity=0.088  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-KACYREGA  410 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~a~  410 (458)
                      +++......|...+..|+|+.|.+...++.+..|+....+...|.++...|++++|.+++.++.+..|++. .+....+.
T Consensus        82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~  161 (409)
T TIGR00540        82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence            45666677777777788888888887777777777666667777777777888888888888777777764 34555677


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ++...|+++.|+..+++.++..|+++.+...++.++.+.+++++
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~  205 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA  205 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            77778888888888887777778877777777777777777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03077 Protein ECB2; Provisional

Probab=98.68  E-value=2.8e-05  Score=83.09  Aligned_cols=391  Identities=12%  Similarity=0.077  Sum_probs=211.6

Q ss_pred             HHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHH-HHc
Q 012683           22 ACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA-ARQ  100 (458)
Q Consensus        22 ~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~  100 (458)
                      +..|+.+..+++.......+-..+       ..-.++.+..-+..|+++.+..+++...    .+|...++.+..+ +..
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~~~d-------~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~  367 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGFAVD-------VSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKN  367 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCCccc-------hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhC
Confidence            344555555555555443222111       1112455666667777777777766522    2333344444433 344


Q ss_pred             CCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCcHHHHHHhCCCHHHHH
Q 012683          101 GHTE----TAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL----SKGAEVDSESDAGTPLIWAAGHGQQEAVK  172 (458)
Q Consensus       101 g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  172 (458)
                      |..+    +++.+.+.|..++..  .-.+.|...+..|..+.+..+.    +.|...+.. ..++.+..-+..|+.+-..
T Consensus       368 g~~~~A~~lf~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~g~~~~A~  444 (857)
T PLN03077        368 GLPDKALETYALMEQDNVSPDEI--TIASVLSACACLGDLDVGVKLHELAERKGLISYVV-VANALIEMYSKCKCIDKAL  444 (857)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCce--eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHcCCHHHHH
Confidence            5433    333334455544432  1223344445556655444433    344332211 0113445556667776665


Q ss_pred             HHHhcCCCCCCCCCCCCcHHHH-HHHcCCHHH----HHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHH----HcC
Q 012683          173 VLLEHHANPNAETEDNITPLLS-AVAAGSLTC----LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLL----KAG  243 (458)
Q Consensus       173 ~Ll~~~~~~~~~~~~~~t~l~~-a~~~~~~~~----~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll----~~g  243 (458)
                      .+.+.=.   ..|...++.+.. .+..|..+-    .+.+.+ +..++.. .-.+.|...+..|.++..+.+.    +.|
T Consensus       445 ~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~-t~~~lL~a~~~~g~l~~~~~i~~~~~~~g  519 (857)
T PLN03077        445 EVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV-TLIAALSACARIGALMCGKEIHAHVLRTG  519 (857)
T ss_pred             HHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh-HHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence            5555321   123333444433 344444432    222222 2233211 0123344555556665555444    556


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhcc-chhHHhhhhhcCCCCCCCCCCCC
Q 012683          244 ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESG-KQLEETRNLKENNAPKDKAPMKE  322 (458)
Q Consensus       244 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~  322 (458)
                      ...+..  .+..-++.-+..|+.+-+.-+++..  .++...|... +..+...... .-++....+.+.+..++.     
T Consensus       520 ~~~~~~--~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~l-I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-----  589 (857)
T PLN03077        520 IGFDGF--LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNIL-LTGYVAHGKGSMAVELFNRMVESGVNPDE-----  589 (857)
T ss_pred             CCccce--echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCc-----
Confidence            555433  2334566677788877665555432  2222222211 1111111111 112222333334433321     


Q ss_pred             CCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683          323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRPD  400 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  400 (458)
                                  ..+...-..+.+.|.+++|.+.|+...+..+  .+...|..+..++.+.|++++|.+.+++. .+.|+
T Consensus       590 ------------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        590 ------------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             ------------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence                        1123333567788999999999998874432  23568888999999999999999998875 35664


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                       +..|..+-.++...|+.+.|....++.++++|++...+..+..++...|++++.
T Consensus       657 -~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        657 -PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence             567888888888889999999999999999999999999999999888887654

>PRK11906 transcriptional regulator; Provisional

Probab=98.66  E-value=4.3e-07  Score=85.06  Aligned_cols=118  Identities=12%  Similarity=0.028  Sum_probs=87.6

Q ss_pred             HHHHhhhHHHhhc---cHHHHHHHHHHhh---ccCCCchhHHHhHHHHHHhh---------CCHHHHHHHHHHHHHhCCC
Q 012683          336 EAKARGDEAFKQK---DYLMAVDAYTQAI---DFDPSDATLLSNRSLCWIRL---------GQAEHALADAKACRALRPD  400 (458)
Q Consensus       336 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~~~p~  400 (458)
                      ++..+|...+.++   .-+.|+..|.+|+   +++|+...+|..+|.|+...         ....+|.+..++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4566666665554   3456777788888   78888888888888887764         2345777788888888888


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ++.+++.+|.++...++++.|...|++|+.++|+.+.++...+.+..-.|+..
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence            88888888888888888888888888888888888888887777665555433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.64  E-value=3.3e-07  Score=90.19  Aligned_cols=121  Identities=14%  Similarity=0.011  Sum_probs=71.9

Q ss_pred             HHHHHHHhhhHHHhhc---cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC--------CHHHHHHHHHHHHHh--CC
Q 012683          333 KAAEAKARGDEAFKQK---DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG--------QAEHALADAKACRAL--RP  399 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a~~~--~p  399 (458)
                      .+-.++.+|..++..+   ++.+|+.+|++|++++|+++.+|..++.+|....        +..++.+...+++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            3556777777776554   4778888899999988888766666666554431        123334444444442  45


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ..+.+|.-+|..+...|++++|...|++|+.++|+ ..++..++.++...|+.++
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~e  471 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRL  471 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHH
Confidence            55555555555555555666666666666655553 4555555555555555443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.64  E-value=3.7e-08  Score=71.07  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=48.3

Q ss_pred             CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CC---CChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          366 SDATLLSNRSLCWIRLGQAEHALADAKACRAL----RP---DWPKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +-..++.++|.+|..+|+|++|+..|++++++    .+   .-..+++++|.++...|++++|++.|++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34567788888888888888888888888765    11   22567778888888888888888888887754

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.63  E-value=1.7e-07  Score=93.68  Aligned_cols=114  Identities=17%  Similarity=0.166  Sum_probs=102.0

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      |.++..+|+|.+|+..|.+..+-..+...+|.|+|.||..+|+|..|++.|+.+++.  ..+++.....||+++++.|.+
T Consensus       653 giVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~  732 (1018)
T KOG2002|consen  653 GIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL  732 (1018)
T ss_pred             hhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence            555667888999999998888777778899999999999999999999999999975  457889999999999999999


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .+|.+.+..|+.+.|.++...|+++.+..++....-
T Consensus       733 ~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~l  768 (1018)
T KOG2002|consen  733 QEAKEALLKARHLAPSNTSVKFNLALVLKKLAESIL  768 (1018)
T ss_pred             HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998866543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.63  E-value=1.4e-07  Score=88.40  Aligned_cols=116  Identities=20%  Similarity=0.219  Sum_probs=100.3

Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---CCCCcHHHHHHhcCcHHH
Q 012683          159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV---AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~g~t~L~~A~~~~~~~i  235 (458)
                      +..|+..++.--++....+|.++-.++.+..+.||+|++.|+-++|++|+++|..--..   ..|.|+||.|+-.++-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            34455555555555566678888888999999999999999999999999999764333   679999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 012683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (458)
Q Consensus       236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (458)
                      .++|++.|+....+|..|.||-.-|-..|+.+++-||-.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999999999999999999999999999999864

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=6.2e-07  Score=76.48  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=69.1

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      -.|..+-..|.|++|++.|...++-+|++..++-..-.+.-.+|+.-+|++.+..-+..-|.+.++|..++.+|...|+|
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence            34555555566666666666666666666666655544555566666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +.|.-+|++.+-+.|.++-++..++.++..++
T Consensus       171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            66666666666666666666666665555443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.62  E-value=2e-07  Score=75.11  Aligned_cols=97  Identities=14%  Similarity=0.030  Sum_probs=89.5

Q ss_pred             hhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683          360 AIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       360 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      ...+.++.....+..|.-++..|++++|...|+-+...+|.+++.++.+|.++..+++|+.|+..|-.|..++++++...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            34456667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCC
Q 012683          440 FAFREAVEAGRKFHGTD  456 (458)
Q Consensus       440 ~~l~~~~~~~~~~~~~~  456 (458)
                      +..+.|+..+++...+.
T Consensus       109 f~agqC~l~l~~~~~A~  125 (165)
T PRK15331        109 FFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             chHHHHHHHhCCHHHHH
Confidence            99999999998876553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.61  E-value=5.7e-07  Score=90.06  Aligned_cols=118  Identities=18%  Similarity=0.142  Sum_probs=108.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      -.++.++..|..+...|+|++|..+|.+++..+|++ .-.++.+|+.|++.|+++.|+..|++++...|++.+...-+|.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            457789999999999999999999999999999988 6678899999999999999999999999999999999999999


Q ss_pred             HHHHhh----hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          411 ALRLLE----KFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       411 ~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      .|...+    .-+.|...+.++++..|.+.+++..+++++.+.
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence            998886    778899999999999999999999999998754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.61  E-value=1.3e-07  Score=88.85  Aligned_cols=96  Identities=26%  Similarity=0.347  Sum_probs=59.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L   94 (458)
                      -++|..|+...|+..+-.|+.+...     .+......+.+|.|+||+||+.|++.+.++|| .+|+++..+|..|.|||
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~-----~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l  698 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSR-----EEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-----hhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhh
Confidence            3556666766676666666665222     12222334455667777777777776666666 34677666677777777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC
Q 012683           95 LHAARQGHTETAKYLFEHGANP  116 (458)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~~~~~  116 (458)
                      .+|-+.|.-+|+..|+.+|+..
T Consensus       699 ~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhHhhcccHHHHHHHHHcCCCc
Confidence            7777777777777777666553

>TIGR00540 hemY_coli hemY protein

Probab=98.60  E-value=4.4e-07  Score=87.95  Aligned_cols=122  Identities=15%  Similarity=0.028  Sum_probs=104.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHH--HhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh--HHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLL--SNRSLCWIRLGQAEHALADAKACRALRPDWP--KACYRE  408 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~~  408 (458)
                      ..+.....|..+...|++++|++.++++++..|++....  ..+.......++..++++.++++++..|+++  .....+
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL  341 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL  341 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            456778889999999999999999999999999987532  3344444556889999999999999999999  888899


Q ss_pred             HHHHHHhhhHHHHHHHHH--HhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          409 GAALRLLEKFDEAANAFY--EGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~--~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      |.++++.|+|++|.++|+  .+++.+|+...+. .++.++.++|+.+++
T Consensus       342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A  389 (409)
T TIGR00540       342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA  389 (409)
T ss_pred             HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH
Confidence            999999999999999999  6888899877644 999999998887654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=7.7e-08  Score=56.18  Aligned_cols=30  Identities=43%  Similarity=0.711  Sum_probs=15.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 012683           90 GETPLLHAARQGHTETAKYLFEHGANPTIP  119 (458)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  119 (458)
                      |.||||+|+..|+.+++++|+++|++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            455555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.60  E-value=9.9e-07  Score=84.09  Aligned_cols=100  Identities=11%  Similarity=0.015  Sum_probs=90.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh----HHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP----KACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~a  409 (458)
                      ...+...|..+...|++++|+..+++++++.|+++.++..+|.++...|++++|+..+.+++...|..+    ..|..+|
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            445667889999999999999999999999999999999999999999999999999999999987543    3567899


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCC
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      .++...|++++|+..|++++...|
T Consensus       194 ~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         194 LFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHCCCHHHHHHHHHHHhcccc
Confidence            999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.59  E-value=8.3e-08  Score=70.27  Aligned_cols=74  Identities=19%  Similarity=0.265  Sum_probs=66.3

Q ss_pred             hCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          381 LGQAEHALADAKACRALRPD--WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       381 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .|+|++|+..++++++.+|.  +...++.+|.++++.|+|++|+..+++ .+.+|.+..++..++.++.++++++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999995  567788899999999999999999999 888999999999999999999998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.59  E-value=3.3e-07  Score=87.36  Aligned_cols=118  Identities=17%  Similarity=0.076  Sum_probs=91.7

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCch-------------------------------------hHHHhHHHHHHh
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-------------------------------------TLLSNRSLCWIR  380 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------------~~~~~~a~~~~~  380 (458)
                      ..+|..++..|++++|+..++++++..|++.                                     .++..+|.++..
T Consensus        47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence            3455555666666666666666555555443                                     344567788899


Q ss_pred             hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH----HHHHHHHHHHHhhhhhcC
Q 012683          381 LGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE----LVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       381 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~  455 (458)
                      .|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++...|.++.    .+..++.++...|+.+++
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999999999999998775432    455788888888887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.59  E-value=3.3e-07  Score=93.81  Aligned_cols=121  Identities=12%  Similarity=-0.053  Sum_probs=107.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---------
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---------  402 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---------  402 (458)
                      ...+++......+...+++++|+..+..+++..|+...+|+.+|.++...+++.+|.-.  .++.+-+.+.         
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~  106 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC  106 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence            45677888888999999999999999999999999999999999999999988887766  6666666665         


Q ss_pred             ----------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          403 ----------KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       403 ----------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                                .+++.+|.||..+|++++|...|+++++++|+++.+..+++-.+... +.+++
T Consensus       107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720        107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence                      89999999999999999999999999999999999999999988876 55443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.58  E-value=4.6e-07  Score=70.29  Aligned_cols=88  Identities=20%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHHHHHH
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPE---NKELVFA  441 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~  441 (458)
                      +.++|++|.++-.+|+.++|+..|++++...+..   .+++..+|..+..+|++++|+..+++++...|+   +.....-
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4678999999999999999999999999986544   679999999999999999999999999998898   7788888


Q ss_pred             HHHHHHHhhhhhcC
Q 012683          442 FREAVEAGRKFHGT  455 (458)
Q Consensus       442 l~~~~~~~~~~~~~  455 (458)
                      ++.++..+++.+++
T Consensus        81 ~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   81 LALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHCCCHHHH
Confidence            88888888877653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=9.6e-07  Score=80.75  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=89.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ....+.+.+.++.+.++|.+|+....++|+++|++.-++|.+|.++..+++|+.|+.+|++|++++|.|-.+...+..+.
T Consensus       256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK  335 (397)
T ss_pred             HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34557888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHH-HHHHHHhhcc
Q 012683          413 RLLEKFDEA-ANAFYEGVTL  431 (458)
Q Consensus       413 ~~~~~~~~A-~~~~~~a~~~  431 (458)
                      .+..++.+. .+.|...+..
T Consensus       336 ~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            888888877 4577766654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.55  E-value=8.3e-07  Score=88.25  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=99.0

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      .-.+++...|.+|-++|+-++|....-.|-.++|.+...|..++....++|.+.+|.-.|.+||+.+|.+-+.++.++..
T Consensus       171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L  250 (895)
T KOG2076|consen  171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL  250 (895)
T ss_pred             cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      |.+.|++..|++.|.+.+.+.|
T Consensus       251 ~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  251 YQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.54  E-value=2.2e-06  Score=82.66  Aligned_cols=94  Identities=11%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhH-HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATL-LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD  419 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  419 (458)
                      +....+.|++++|...|.++.+.+|+.... ....+..+...|++++|+..++++.+.+|+++.++..++.+|...|+++
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            334455566666666666666555554322 2233555556666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhhccCCC
Q 012683          420 EAANAFYEGVTLDPE  434 (458)
Q Consensus       420 ~A~~~~~~a~~~~p~  434 (458)
                      +|++.+.+..+..+.
T Consensus       205 ~a~~~l~~l~k~~~~  219 (398)
T PRK10747        205 SLLDILPSMAKAHVG  219 (398)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            666555555544443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.53  E-value=0.00019  Score=74.96  Aligned_cols=365  Identities=13%  Similarity=0.036  Sum_probs=212.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhC---CCCCCCCCCCCCcH-HHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCcHHH
Q 012683           57 RGALHFAAREGKTDVCKYLLEEL---KLDVDTQDEDGETP-LLHAARQGHTETAKYL----FEHGANPTIPSNLGATALH  128 (458)
Q Consensus        57 ~t~L~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~  128 (458)
                      ++.+..-+..|+.+-+..+++..   |..++.   ...+. |..++..|..+..+.+    ++.|...+..  ...+.+.
T Consensus       193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~---~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~--~~n~Li~  267 (697)
T PLN03081        193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEP---RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF--VSCALID  267 (697)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh---hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce--eHHHHHH
Confidence            35566667788876555554431   333322   12222 3344445655544443    5566555432  2345567


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHH----HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH-
Q 012683          129 HSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV----KVLLEHHANPNAETEDNITPLLSAVAAGSLTC-  203 (458)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~----~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~-  203 (458)
                      ..+..|.++-+..+++.-...+.. ..++.+..-+..|..+-.    +.+.+.|..++...  -.+.+...+..|.++- 
T Consensus       268 ~y~k~g~~~~A~~vf~~m~~~~~v-t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t--~~~ll~a~~~~g~~~~a  344 (697)
T PLN03081        268 MYSKCGDIEDARCVFDGMPEKTTV-AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT--FSIMIRIFSRLALLEHA  344 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhccchHHH
Confidence            778889988888777654332211 111445556667775443    33334555443321  1133444556666554 


Q ss_pred             ---HHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHH-HHHcCCHHHHHhhcCC-CCC
Q 012683          204 ---LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV-AAARGNREAVEILFPL-TSE  278 (458)
Q Consensus       204 ---~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~v~~Ll~~-~~~  278 (458)
                         ...+++.|..++.. -.++.+..-+..|+++-+..+++.-..   +|..-++.|-. -+..|+.+-+.-+++. ...
T Consensus       345 ~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~  420 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIV-ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE  420 (697)
T ss_pred             HHHHHHHHHhCCCCCee-ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               44556677666543 145667777888999888888875333   33344555443 4566765444333321 111


Q ss_pred             CCCCCCcchhhHHHHHHhhc-cchhHHhhhhhcCCCC-CCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHH
Q 012683          279 DPSIPKWTVDGILEYMQSES-GKQLEETRNLKENNAP-KDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDA  356 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  356 (458)
                      . ..  .+..+...++.+.. ....++...+.+.... ....|.             ...+.-....+.+.|++++|.+.
T Consensus       421 g-~~--Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------------~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        421 G-VA--PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------------AMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             C-CC--CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------------ccchHhHHHHHHhcCCHHHHHHH
Confidence            0 01  12222333332221 1223332222222111 000000             12355567788899999999999


Q ss_pred             HHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----
Q 012683          357 YTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL-----  431 (458)
Q Consensus       357 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----  431 (458)
                      +++. ...| +...|..+..++...|+++.|...+++++.++|++...|..++.+|...|++++|.+.++...+.     
T Consensus       485 ~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        485 IRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            9874 3334 45678888888999999999999999999999999999999999999999999999998865432     


Q ss_pred             ---------------------CCCcHHHHHHHHHHHHHhhh
Q 012683          432 ---------------------DPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       432 ---------------------~p~~~~~~~~l~~~~~~~~~  451 (458)
                                           +|...+++..+..+..++++
T Consensus       563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  603 (697)
T PLN03081        563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE  603 (697)
T ss_pred             CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence                                 35555667777777776654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.52  E-value=2.5e-07  Score=86.93  Aligned_cols=90  Identities=30%  Similarity=0.450  Sum_probs=79.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccc-----CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683          190 TPLLSAVAAGSLTCLDLLIQAGANANIV-----AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (458)
Q Consensus       190 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-----~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  264 (458)
                      .-|.-|+...++..+-+|+.+|......     .+|+|+||+||..|++.+.++|+=+|+|+-.+|..|+|||.||-..|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            3466778888888899999999765543     46899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcCCCCCC
Q 012683          265 NREAVEILFPLTSED  279 (458)
Q Consensus       265 ~~~~v~~Ll~~~~~~  279 (458)
                      .-+++.+|+.+|..+
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999998643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.52  E-value=9.7e-07  Score=85.10  Aligned_cols=120  Identities=15%  Similarity=0.074  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +.+......+..+...|+.++|...+.++++ .|.++.+...++.+  ..++++++++.+++.++..|+++..++.+|.+
T Consensus       261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl  337 (398)
T PRK10747        261 HQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL  337 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4466678889999999999999999999999 55566666555555  45999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...++|++|.++|+++++..|++.. +..++.++.++++.+++
T Consensus       338 ~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        338 LMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA  380 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999766 44789998888876653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=2e-06  Score=79.15  Aligned_cols=121  Identities=15%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-------------------------
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-------------------------  383 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------------------------  383 (458)
                      .....++-+.+.++.|-..++..+||+.|.++..+-|++|.++..+|..|-+.|+                         
T Consensus       553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl  632 (840)
T KOG2003|consen  553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL  632 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH
Confidence            3445677788888999899999999999999999999999999988888877665                         


Q ss_pred             ---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          384 ---------AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       384 ---------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                               +++|+.+|++|.-+.|+-.+-.+..+.|+.+.|+|+.|.+.|+...+..|.+.++..-|.++..-+
T Consensus       633 ~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  633 AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence                     578899999999999999998899999999999999999999999999999999887777765544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.50  E-value=1.5e-06  Score=81.84  Aligned_cols=88  Identities=20%  Similarity=0.193  Sum_probs=45.8

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      -.+..+...++..+|+..+.+++...|.+..++...|..+++.++++.|+..+++|+.+.|+..+.|+.||.+|..+|+|
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence            34444444444555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 012683          419 DEAANAFY  426 (458)
Q Consensus       419 ~~A~~~~~  426 (458)
                      +.|+..+.
T Consensus       285 e~ALlaLN  292 (395)
T PF09295_consen  285 ENALLALN  292 (395)
T ss_pred             HHHHHHHh
Confidence            55554444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.6e-06  Score=75.32  Aligned_cols=109  Identities=12%  Similarity=0.001  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-hHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-PKACYR  407 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~  407 (458)
                      ...+.|+-+.+.+..+..+.+.+.|...+.+|++.+|++..+-..+|.+....|+|++|++.++.+++-||.. +.+.-.
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999999999999999999999999987 577788


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      +..||..+|+.++.+..+.++.+..++...
T Consensus       255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         255 LYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            999999999999999999999988876443

>PRK11906 transcriptional regulator; Provisional

Probab=98.48  E-value=8.6e-07  Score=83.08  Aligned_cols=92  Identities=17%  Similarity=0.131  Sum_probs=86.5

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY  426 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  426 (458)
                      ..+-.+|.+.-.+|++++|.|+.+++.+|.+..-.++++.|...|++|+.++|+++.+||..|.++...|+.++|.+.++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCcHHH
Q 012683          427 EGVTLDPENKEL  438 (458)
Q Consensus       427 ~a~~~~p~~~~~  438 (458)
                      +|++++|-...+
T Consensus       397 ~alrLsP~~~~~  408 (458)
T PRK11906        397 KSLQLEPRRRKA  408 (458)
T ss_pred             HHhccCchhhHH
Confidence            999999976543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=4.5e-07  Score=84.78  Aligned_cols=88  Identities=34%  Similarity=0.508  Sum_probs=77.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683           58 GALHFAAREGKTDVCKYLLE-ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI  136 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  136 (458)
                      -|||.++...+.+-+...+. .....++.+|..|.||||+|+..|+.+.+..|+..|+++..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            45999999998876665433 23567889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 012683          137 ELLTYLLSK  145 (458)
Q Consensus       137 ~~~~~Ll~~  145 (458)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            988888764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=1.7e-06  Score=78.79  Aligned_cols=107  Identities=13%  Similarity=0.121  Sum_probs=99.0

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                      .--++|-.+|++++++.|.+..+...+|..+...|+++.++..+++.+...|+.. .+..+|.++...+.+++|++.|..
T Consensus       418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4457899999999999999999999999999999999999999999999999766 699999999999999999999999


Q ss_pred             hhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          428 GVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       428 a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      |+.++|+++.....+..+.++.+..+..
T Consensus       497 ALr~dP~~~~sl~Gl~~lEK~~~~~DAT  524 (564)
T KOG1174|consen  497 ALRQDPKSKRTLRGLRLLEKSDDESDAT  524 (564)
T ss_pred             HHhcCccchHHHHHHHHHHhccCCCCcc
Confidence            9999999999999999998888765543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.47  E-value=8.4e-07  Score=81.99  Aligned_cols=85  Identities=29%  Similarity=0.376  Sum_probs=77.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683           60 LHFAAREGKTDVCKYLLEELKLDVDTQDE-DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL  138 (458)
Q Consensus        60 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~  138 (458)
                      ||-+++.|+.++.-.||.- |+++|+.+. .|.||||+|+..|+..=+++|+=+|+|+...|..|.||+.+|-..||-++
T Consensus       137 LhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            9999999999988888876 999998864 68999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHhC
Q 012683          139 LTYLLSK  145 (458)
Q Consensus       139 ~~~Ll~~  145 (458)
                      .+.|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            7777654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.46  E-value=6.8e-07  Score=86.50  Aligned_cols=122  Identities=15%  Similarity=0.180  Sum_probs=103.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--------  398 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------  398 (458)
                      ..+...|..|...++|.+|+..|++|+++        .|.-..++.++|.+|.+.|+|++|..+|++|+.+-        
T Consensus       242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~  321 (508)
T KOG1840|consen  242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH  321 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence            33447999999999999999999999985        34446789999999999999999999999999773        


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-----CC---cHHHHHHHHHHHHHhhhhhcCC
Q 012683          399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLD-----PE---NKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~---~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      |.-...+..++.++...+++++|...|++++++.     ++   -+..+.+++.++..+|++.+++
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence            3345677889999999999999999999998752     23   3677899999999999988764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.46  E-value=2.1e-06  Score=84.61  Aligned_cols=91  Identities=13%  Similarity=0.071  Sum_probs=81.0

Q ss_pred             ccHHHHHHHHHHhhcc--CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 012683          348 KDYLMAVDAYTQAIDF--DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF  425 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~  425 (458)
                      .+.+++.+...+++.+  +|.++.+|.-+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|.+.|
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3456777777787774  7788899999999999999999999999999999994 789999999999999999999999


Q ss_pred             HHhhccCCCcHHHH
Q 012683          426 YEGVTLDPENKELV  439 (458)
Q Consensus       426 ~~a~~~~p~~~~~~  439 (458)
                      ++|+.++|.++..+
T Consensus       477 ~~A~~L~P~~pt~~  490 (517)
T PRK10153        477 STAFNLRPGENTLY  490 (517)
T ss_pred             HHHHhcCCCCchHH
Confidence            99999999988644

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.45  E-value=8.3e-07  Score=87.91  Aligned_cols=124  Identities=20%  Similarity=0.232  Sum_probs=101.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      .+.--...|+..|+.-.|+..++...   .++|..|.-|.++|++|+.+.+.+++++|++.+...       ..+|-+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            34455778999999999999998754   467888999999999999999999999999986554       46899999


Q ss_pred             HcCCHHHHHHHHhCCCCCC-----------CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCC
Q 012683          132 GIGNIELLTYLLSKGAEVD-----------SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET  185 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~-----------~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  185 (458)
                      ..|..++++.++++-....           .-..+-|||.+|+..++.+|++.|+++|+.+....
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            9999999999998743321           01112299999999999999999999998876543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.45  E-value=5.1e-07  Score=65.05  Aligned_cols=66  Identities=26%  Similarity=0.315  Sum_probs=57.6

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC---C-C---chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD---P-S---DATLLSNRSLCWIRLGQAEHALADAKACRAL  397 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p-~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  397 (458)
                      ..+..+...|..++..|+|++|+..|++++++.   + +   -..+++++|.++..+|++++|++.+++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            457789999999999999999999999999762   2 2   2568999999999999999999999999986

...

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=9.8e-07  Score=78.91  Aligned_cols=84  Identities=27%  Similarity=0.302  Sum_probs=70.9

Q ss_pred             hhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012683           45 SKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGA  124 (458)
Q Consensus        45 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  124 (458)
                      .+.+....+..|  -|..||+.|+++.|++|++. |.++|..|....+||.+|+..||.++|++||++|+-.+.-...|.
T Consensus        27 ~~s~~~~~~~f~--elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   27 KPSVPLKKVPFG--ELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             CcccccccCchH--HHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            344444455543  49999999999999999996 999999999999999999999999999999999998877667787


Q ss_pred             cHHHHHH
Q 012683          125 TALHHSA  131 (458)
Q Consensus       125 t~L~~A~  131 (458)
                      .+++-|.
T Consensus       104 RC~YgaL  110 (516)
T KOG0511|consen  104 RCHYGAL  110 (516)
T ss_pred             hhhhhhh
Confidence            7766554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.42  E-value=2.2e-06  Score=80.76  Aligned_cols=106  Identities=14%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY  426 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  426 (458)
                      .+++++|++.|++..+.+|+   +...+|.++..+++..+|++.+.++++..|.+...+...|..+...++++.|+...+
T Consensus       182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk  258 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK  258 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            46899999999998887764   667799999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          427 EGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       427 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +++.+.|++.+.|..|+.++-++++++.+
T Consensus       259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  259 KAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999987754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.40  E-value=2.9e-06  Score=82.72  Aligned_cols=120  Identities=18%  Similarity=0.036  Sum_probs=94.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHH----------------------------HHhhCCHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC----------------------------WIRLGQAE  385 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~----------------------------~~~~~~~~  385 (458)
                      .+.+-.....|...|+-.+|.+...+-++ .|+++.+|..+|.+                            ....++|.
T Consensus       424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs  502 (777)
T KOG1128|consen  424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS  502 (777)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence            33344444455666666666666666666 45555555544422                            22357899


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ++.++++..+.++|-....||++|.+..++++++.|.++|..++.++|++.++|++++-++-++++..+
T Consensus       503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r  571 (777)
T KOG1128|consen  503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR  571 (777)
T ss_pred             HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence            999999999999999999999999999999999999999999999999999999999999998877654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.40  E-value=1.4e-06  Score=84.39  Aligned_cols=124  Identities=14%  Similarity=0.117  Sum_probs=99.1

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------  397 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------  397 (458)
                      .....+...|..|+.+|+|++|+..+++|++.        .|.-......+|..|..+++|.+|+..|.+|+.+      
T Consensus       197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            34455667999999999999999999999998        4554556667999999999999999999999976      


Q ss_pred             --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD--------PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                        .|....++.++|.+|...|+|++|..++++|+++-        |+-+..+.+++.++..++++.++
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence              45556788999999999999999999999998752        22344555666666655555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=1.8e-06  Score=80.83  Aligned_cols=110  Identities=25%  Similarity=0.340  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh---hCCHHHHHHHHHHHHHhCCCChHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR---LGQAEHALADAKACRALRPDWPKA  404 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~  404 (458)
                      -+..+.++..++.|+..|-.+.+..|+..|.+++...|....+|.++|.++++   .|+.-.|++++..|++++|...++
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            45566788899999999999999999999999999999999999999999988   458889999999999999999999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      +|+++.++..++++.+|+++...+....|.+..
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999999999999888777885543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=1.3e-06  Score=77.23  Aligned_cols=124  Identities=10%  Similarity=0.101  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+.-+...+..+-.-+++++|++.|..+++++|.+.++.--.|.-|+.-++.+-|+++|++.+++.-.+++.|.++|.|.
T Consensus       289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            34456667777777788888888888888888888888888888888888888888888888888888888888999999


Q ss_pred             HHhhhHHHHHHHHHHhhcc--CCC-cHHHHHHHHHHHHHhhhhhcCC
Q 012683          413 RLLEKFDEAANAFYEGVTL--DPE-NKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~--~p~-~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      +-.++++-++.+|++|+..  +|+ -.+.|++++.+.-.+|++.-+.
T Consensus       369 ~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~  415 (478)
T KOG1129|consen  369 LYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK  415 (478)
T ss_pred             HhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence            8899999999999888865  343 3678888888877777765443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.38  E-value=9.1e-06  Score=66.15  Aligned_cols=120  Identities=16%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhc-cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAID-FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGA  410 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~  410 (458)
                      .+-....|+.+...|++.||...|++++. +.-.++..+..++.+.+..+++.+|...+++..+-+|.  .++...-.|+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            34456788999999999999999999997 56788999999999999999999999999999999985  5788899999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ++-..|.+.+|...|+.++...|+ +++.-.++..+..+++..+
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhH
Confidence            999999999999999999998877 6666677777777776544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.38  E-value=7.3e-07  Score=83.42  Aligned_cols=85  Identities=29%  Similarity=0.441  Sum_probs=55.4

Q ss_pred             cHHHHHHhCCCHHHHHHHH--hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcH
Q 012683          157 TPLIWAAGHGQQEAVKVLL--EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST  233 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~  233 (458)
                      .|+|+++.....+-+...+  +....++..|..|.||||+|+..|+...++.|+..|+++... +.|.++||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3477776666655544422  223345566667777777777777777777777777777666 5677777777777777


Q ss_pred             HHHHHHHH
Q 012683          234 EIIKCLLK  241 (458)
Q Consensus       234 ~iv~~Ll~  241 (458)
                      .++..++.
T Consensus       102 q~i~~vlr  109 (560)
T KOG0522|consen  102 QIITEVLR  109 (560)
T ss_pred             HHHHHHHH
Confidence            66666665

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.36  E-value=0.00055  Score=73.41  Aligned_cols=396  Identities=9%  Similarity=0.066  Sum_probs=219.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCC-chhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 012683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKG-LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED   89 (458)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~   89 (458)
                      .+.....+-.-++.|+++....+++.+...+.. +..       ....+.+...+..|..+-+..+......    .+..
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~-------v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~  438 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK-------IYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS  438 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH-------HHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence            344444555556789999888888876543211 100       0011234445667777766666655321    2222


Q ss_pred             CC-cHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCcHHH
Q 012683           90 GE-TPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLT----YLLSKGAEVDSESDAGTPLI  160 (458)
Q Consensus        90 g~-t~L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~~t~l~  160 (458)
                      -. +.|...+..|+.+-+    +.+.+.|..++...  ..+.+...+..|..+.+.    .+.+.|..++... ..+.+.
T Consensus       439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t--ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT-ynaLI~  515 (1060)
T PLN03218        439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL--YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT-FGALID  515 (1060)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Confidence            22 234455566765544    44456666554321  234556667778776544    4444454433211 124566


Q ss_pred             HHHhCCCHHHH----HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCcHHHHHHhc
Q 012683          161 WAAGHGQQEAV----KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ------AGANANIVAGGATPLHIAADI  230 (458)
Q Consensus       161 ~A~~~~~~~~~----~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~------~g~~~~~~~~g~t~L~~A~~~  230 (458)
                      ..+..|+.+-.    +.+.+.|..++...  -.+.+...+..|.++-+..+++      .|..++.. --.+.+...+..
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT--YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-TynaLI~ay~k~  592 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVGALMKACANA  592 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHC
Confidence            67777876543    33444555443211  1234455567777765544432      23333322 123556677778


Q ss_pred             CcHHHHHHHH----HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC-CCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683          231 GSTEIIKCLL----KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL-TSEDPSIPKWTVDGILEYMQSESGKQLEET  305 (458)
Q Consensus       231 ~~~~iv~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (458)
                      |+.+-+..++    +.|..++..  ...+.+...+..|+.+-+.-++.. .......+.......+... .. .+..+..
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~--tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~-~k-~G~~eeA  668 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA-GH-AGDLDKA  668 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-Hh-CCCHHHH
Confidence            8876444444    455444322  112345555667775544433321 1111111111111122111 11 1222222


Q ss_pred             ----hhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHh
Q 012683          306 ----RNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIR  380 (458)
Q Consensus       306 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~  380 (458)
                          ..+.+.+..++                 ...+......|.+.|++++|++.|++..+.. ..+...|..+...|.+
T Consensus       669 ~~l~~eM~k~G~~pd-----------------~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k  731 (1060)
T PLN03218        669 FEILQDARKQGIKLG-----------------TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE  731 (1060)
T ss_pred             HHHHHHHHHcCCCCC-----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence                22232222221                 2356777888999999999999999876542 2346789999999999


Q ss_pred             hCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCcHHHHHHHHHH
Q 012683          381 LGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--DPENKELVFAFREA  445 (458)
Q Consensus       381 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~  445 (458)
                      .|++++|++.|++....  .| +...|..+..++...|++++|.+.+.+..+.  .|+...+...++.+
T Consensus       732 ~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc  799 (1060)
T PLN03218        732 GNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC  799 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999998765  45 4557888889999999999999999998864  55544444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.36  E-value=2.8e-06  Score=76.06  Aligned_cols=89  Identities=20%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             chhHHHhHHHHH-HhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHHHH
Q 012683          367 DATLLSNRSLCW-IRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPE---NKELV  439 (458)
Q Consensus       367 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~  439 (458)
                      +...+|..|..+ .+.|+|++|+..|++.++..|++   +.++|.+|.+|+..|++++|+..|+++++..|+   .++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            457778888876 56799999999999999999998   589999999999999999999999999988887   47888


Q ss_pred             HHHHHHHHHhhhhhcC
Q 012683          440 FAFREAVEAGRKFHGT  455 (458)
Q Consensus       440 ~~l~~~~~~~~~~~~~  455 (458)
                      +.++.++..+++..++
T Consensus       221 ~klg~~~~~~g~~~~A  236 (263)
T PRK10803        221 FKVGVIMQDKGDTAKA  236 (263)
T ss_pred             HHHHHHHHHcCCHHHH
Confidence            8899999888776543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=3.9e-06  Score=69.00  Aligned_cols=84  Identities=18%  Similarity=0.225  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      +.++--+-++|..+.+.+.|+.||..+++||++.|.+-.++..||.+|.++.+|++|+.+|.+.+.++|....+--..++
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            45667788999999999999999999999999999999999999999999999999999999999999988766554444


Q ss_pred             HHHH
Q 012683          411 ALRL  414 (458)
Q Consensus       411 ~~~~  414 (458)
                      +--.
T Consensus       211 l~~~  214 (271)
T KOG4234|consen  211 LPPK  214 (271)
T ss_pred             cCHH
Confidence            4333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.33  E-value=5.7e-06  Score=79.62  Aligned_cols=141  Identities=9%  Similarity=-0.015  Sum_probs=85.9

Q ss_pred             HHHhhccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHH
Q 012683          293 YMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLS  372 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  372 (458)
                      |...+..+.+..+...++.-...                  .+.+-.+|-.+..-|+-++|.+....+++.++.+...|.
T Consensus        18 yE~kQYkkgLK~~~~iL~k~~eH------------------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH   79 (700)
T KOG1156|consen   18 YETKQYKKGLKLIKQILKKFPEH------------------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH   79 (700)
T ss_pred             HHHHHHHhHHHHHHHHHHhCCcc------------------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence            33444555666666666633222                  233445666666666666666666666666666666666


Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      -+|.++..-.+|++|++.|+.|+.++|++...++.++..+.++++|+.....-.+.+++.|.....|..++....-.++
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666555554444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.33  E-value=1.4e-06  Score=54.68  Aligned_cols=42  Identities=26%  Similarity=0.234  Sum_probs=27.4

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      .+++.+|.+|..+|++++|++.|+++++.+|+++.+++.+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666666666666666666666666666666666666654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.32  E-value=2.7e-06  Score=85.50  Aligned_cols=115  Identities=20%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+..+|-.+...+++.+|+..|+.|++.+|.+..+|..+|.+|...|+|..|++.|.+|..++|.+.-+.|..|.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            44566888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      .|+|.+|+..+...+.-..........++.++-++
T Consensus       643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            99999999999988876655556666666655544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.31  E-value=3e-06  Score=84.07  Aligned_cols=124  Identities=28%  Similarity=0.360  Sum_probs=98.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Q 012683           88 EDGETPLLHAARQGHTETAKYLFEHG----ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAA  163 (458)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~  163 (458)
                      ..+.--...|+..|+.-.|+..++..    .+++..|..|+++|++|+.+.+.++.++|++.+...      +.+|.+|+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~------gdALL~aI   96 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE------GDALLLAI   96 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc------chHHHHHH
Confidence            34556688999999999999888643    457788999999999999999999999999977554      57899999


Q ss_pred             hCCCHHHHHHHHhcCCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 012683          164 GHGQQEAVKVLLEHHANPN----------AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV  217 (458)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~----------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  217 (458)
                      ..|..++++.++.+.....          ..-..+.||+.+|+..+++++++.|+.+|+.+...
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            9999999999998743321          12234568888888888888888888887766544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.30  E-value=7.5e-07  Score=52.07  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=21.3

Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683          391 AKACRALRPDWPKACYREGAALRLLEKFDEAA  422 (458)
Q Consensus       391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~  422 (458)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=4.5e-06  Score=76.10  Aligned_cols=112  Identities=15%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..++.++-.|..+|.+++|..|+.+-.++|+.+|.+..++...|.++..+|+.++|+-.|+.|..+-|...+.|-.+-.+
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34556778888888888999999988999999998888888889999999999999999999999998888888888888


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  443 (458)
                      |...|++.||.-.-+.+++.-|+++.....++
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            88888888888887778777777777777765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.26  E-value=2.8e-06  Score=85.36  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=102.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------------------------------------hHHHhHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------------------------------------TLLSNRSLC  377 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------------------~~~~~~a~~  377 (458)
                      +-.+--.|..|..--+...|..+|++|.++++.+.                                    ..|..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            34455666666666677778888888888877653                                    356778999


Q ss_pred             HHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          378 WIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       378 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      |.+.+++..|+.+|+.|++.+|.+..+|..+|.+|-..|+|..|++.|.+|..++|.+.-..+-.+.+...+|++.+
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888888888877654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=2.3e-05  Score=71.55  Aligned_cols=117  Identities=12%  Similarity=0.002  Sum_probs=83.3

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG--QAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...-..+.+++.++++.|.+.++.+-+.+.+..-...--|.+.+..|  .+.+|...|++..+..|.++..+..+|.++.
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l  212 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL  212 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            33445667788888888888888887776554433333344444444  5888888888887777788888888888888


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      .+|+|++|.+.+++++..+|+++++..++..+..-+|+.
T Consensus       213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            888888888888888888888888888887776666655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.24  E-value=1.9e-06  Score=54.00  Aligned_cols=43  Identities=30%  Similarity=0.365  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      |.+++.+|.+|..+|++++|++.|+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            4689999999999999999999999999999999999998875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.24  E-value=1.5e-05  Score=82.10  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=99.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----------------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-----------------  397 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----------------  397 (458)
                      .+++.+|.+|-+.|++++|+..|+++++++|+++.+..++|..|... +.++|+..+.+|++.                 
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~  195 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999 999999999999854                 


Q ss_pred             ---CCCChHHHHH--------HH------------HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          398 ---RPDWPKACYR--------EG------------AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       398 ---~p~~~~~~~~--------~a------------~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                         +|++...++.        ++            ..|...++|++++..++.+++++|.+..+.+.+..++.+
T Consensus       196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence               4554443221        23            677788899999999999999999999999999999883

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.23  E-value=8e-06  Score=78.69  Aligned_cols=116  Identities=9%  Similarity=-0.112  Sum_probs=85.4

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK  417 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  417 (458)
                      ...+....-.+..++|+..++++++..|+..-+|..+|+++.++++.+.|...|...++..|+.+..|.-++..-...|.
T Consensus       655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  655 MKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            33444445556777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          418 FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      .-.|...+.++...||++...|...-++..+.|...
T Consensus       735 ~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  735 LVRARSILDRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            777777777777777777777776666666655544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.21  E-value=9.7e-07  Score=51.58  Aligned_cols=34  Identities=29%  Similarity=0.556  Sum_probs=31.9

Q ss_pred             HHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHH
Q 012683          356 AYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       356 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999963

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.20  E-value=2.7e-06  Score=50.04  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD  400 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  400 (458)
                      .+|+++|.++..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03077 Protein ECB2; Provisional

Probab=98.18  E-value=0.0029  Score=67.86  Aligned_cols=393  Identities=12%  Similarity=0.012  Sum_probs=223.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhccc-CCCcHHHHHHHcCCHHHHHHHHHh---CCCCCCCCCCCCC
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDA-NKRGALHFAAREGKTDVCKYLLEE---LKLDVDTQDEDGE   91 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~   91 (458)
                      .-+..-++.|+++....+++....            .|. ..++.+.-.+..|+.+-+..+++.   .|..++...  -.
T Consensus       328 ~Li~~y~k~g~~~~A~~vf~~m~~------------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--~~  393 (857)
T PLN03077        328 SLIQMYLSLGSWGEAEKVFSRMET------------KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--IA  393 (857)
T ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC------------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--HH
Confidence            334555677999999988887432            111 234556666778887654444432   144443321  12


Q ss_pred             cHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCC
Q 012683           92 TPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ  167 (458)
Q Consensus        92 t~L~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~  167 (458)
                      +.|...+..|..+..    ..+++.|...+..  ...+.+...++.|+.+-+..+++.=.+.+... ..+.+...+.+|.
T Consensus       394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~--~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs-~~~mi~~~~~~g~  470 (857)
T PLN03077        394 SVLSACACLGDLDVGVKLHELAERKGLISYVV--VANALIEMYSKCKCIDKALEVFHNIPEKDVIS-WTSIIAGLRLNNR  470 (857)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee-HHHHHHHHHHCCC
Confidence            334444556765544    4444566554321  22344566678899888887776543322111 1133444455665


Q ss_pred             HHH-HHHHHhcCCCCCCCCCCCC-cHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          168 QEA-VKVLLEHHANPNAETEDNI-TPLLSAVAAGSLTCL----DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       168 ~~~-~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~----~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                      .+- ++++-+--..+ ..|.... +.|...+..|.++..    ..+++.|...+.. -++..+..-++.|+.+-...+.+
T Consensus       471 ~~eA~~lf~~m~~~~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~-~~naLi~~y~k~G~~~~A~~~f~  548 (857)
T PLN03077        471 CFEALIFFRQMLLTL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFN  548 (857)
T ss_pred             HHHHHHHHHHHHhCC-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce-echHHHHHHHHcCCHHHHHHHHH
Confidence            432 22222211111 1222222 233334455665544    4455667666543 24566777788898887777766


Q ss_pred             cCCCCCCCCCCCCcHHH-HHHHcCCHHHHHhhcC----CCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCC-CC
Q 012683          242 AGADPNVTDEDGQKPIQ-VAAARGNREAVEILFP----LTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNA-PK  315 (458)
Q Consensus       242 ~g~~~~~~~~~g~t~l~-~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  315 (458)
                      .-    .+|...++.+- ..+..|+.+-+.-+++    .+-.+ +  .......+. .... ....++...+.+... ..
T Consensus       549 ~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d--~~T~~~ll~-a~~~-~g~v~ea~~~f~~M~~~~  619 (857)
T PLN03077        549 SH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-D--EVTFISLLC-ACSR-SGMVTQGLEYFHSMEEKY  619 (857)
T ss_pred             hc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C--cccHHHHHH-HHhh-cChHHHHHHHHHHHHHHh
Confidence            42    34444455544 3456777654444332    22111 1  111111221 1111 223333322222211 00


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683          316 DKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR  395 (458)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  395 (458)
                      ...         +    ..+.+.-....+.+.|++++|.+.+++. ...|+ ..+|..+-.++..-++.+.|....++++
T Consensus       620 gi~---------P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~  684 (857)
T PLN03077        620 SIT---------P----NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIF  684 (857)
T ss_pred             CCC---------C----chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            000         0    1245677888899999999999999884 45555 5666666666777899999999999999


Q ss_pred             HhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc----c----------------------CCCcHHHHHHHHHHHHHh
Q 012683          396 ALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT----L----------------------DPENKELVFAFREAVEAG  449 (458)
Q Consensus       396 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~----------------------~p~~~~~~~~l~~~~~~~  449 (458)
                      +++|+++..|..++.+|...|+|++|.+..+.--+    .                      .|...+++..+..+..++
T Consensus       685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~  764 (857)
T PLN03077        685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM  764 (857)
T ss_pred             hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998765422    2                      355567777777777776


Q ss_pred             hh
Q 012683          450 RK  451 (458)
Q Consensus       450 ~~  451 (458)
                      ++
T Consensus       765 ~~  766 (857)
T PLN03077        765 KA  766 (857)
T ss_pred             Hh
Confidence            54

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.18  E-value=2.8e-05  Score=67.44  Aligned_cols=120  Identities=18%  Similarity=0.093  Sum_probs=94.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCC-----------HHHHHHHHHHHHHhCC
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQ-----------AEHALADAKACRALRP  399 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p  399 (458)
                      .++.+..|..+++.|+|.+|+..|++.++..|+++   .+++.+|.++.++.+           ..+|+..|+..++.-|
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP  121 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP  121 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence            45678999999999999999999999999999875   589999999877643           4589999999999999


Q ss_pred             CChHH-----------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhhhh
Q 012683          400 DWPKA-----------------CYREGAALRLLEKFDEAANAFYEGVTLDPENK---ELVFAFREAVEAGRKFH  453 (458)
Q Consensus       400 ~~~~~-----------------~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~  453 (458)
                      ++.-+                 -+..|.-|.+.|.|..|+..++.+++..|+.+   ++...+...+.+++...
T Consensus       122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            97432                 25689999999999999999999999999875   55666666666666554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.16  E-value=3.6e-05  Score=68.45  Aligned_cols=122  Identities=15%  Similarity=0.071  Sum_probs=99.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCC------------------HHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQ------------------AEHALADAK  392 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~------------------~~~A~~~~~  392 (458)
                      ..+....|..+++.++|++|+..|++.++..|+++   .+++.+|.++..+++                  ..+|+..|+
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~  148 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS  148 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH
Confidence            44578999999999999999999999999999874   689999998765541                  357889999


Q ss_pred             HHHHhCCCCh---HH--------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhhhh
Q 012683          393 ACRALRPDWP---KA--------------CYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGRKF  452 (458)
Q Consensus       393 ~a~~~~p~~~---~~--------------~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~  452 (458)
                      +.++.-|++.   ++              -+..|.-|.+.|.|..|+.-++..++..|+.   +++...+...+..+|..
T Consensus       149 ~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~  228 (243)
T PRK10866        149 KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN  228 (243)
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence            9999999873   11              2457788999999999999999999988875   56677777777776665


Q ss_pred             hcC
Q 012683          453 HGT  455 (458)
Q Consensus       453 ~~~  455 (458)
                      +++
T Consensus       229 ~~a  231 (243)
T PRK10866        229 AQA  231 (243)
T ss_pred             HHH
Confidence            543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.16  E-value=3.2e-06  Score=75.22  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      .-.+|.-|++.|.|++|++.|.+++.++|.++..|.++|.+|+++..|..|..+...|+.++.....++...+.+...+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999888888888888888887


Q ss_pred             hhhcCC
Q 012683          451 KFHGTD  456 (458)
Q Consensus       451 ~~~~~~  456 (458)
                      ...+++
T Consensus       180 ~~~EAK  185 (536)
T KOG4648|consen  180 NNMEAK  185 (536)
T ss_pred             hHHHHH
Confidence            766553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.16  E-value=4.2e-05  Score=75.07  Aligned_cols=86  Identities=17%  Similarity=0.129  Sum_probs=63.4

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      +++.+|++|...|++++|+.++++||...|+.++.|+.+|.++...|++.+|.+++..|-.+++.|.-+.......+.+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            34666777777777777777777777777777777777777777777777777777777777777777766666666666


Q ss_pred             hhhhcC
Q 012683          450 RKFHGT  455 (458)
Q Consensus       450 ~~~~~~  455 (458)
                      ++..++
T Consensus       276 ~~~e~A  281 (517)
T PF12569_consen  276 GRIEEA  281 (517)
T ss_pred             CCHHHH
Confidence            655543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.11  E-value=5.4e-05  Score=73.21  Aligned_cols=108  Identities=18%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683          342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA  421 (458)
Q Consensus       342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A  421 (458)
                      ...+...+|+.|...|.+|-...|+ ..+|+..+....-++..++|++.++++++.-|++++.|+.+|+++...++.+.|
T Consensus       626 Kle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~a  704 (913)
T KOG0495|consen  626 KLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMA  704 (913)
T ss_pred             HHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHH
Confidence            3344555666666666666554433 566666677777788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          422 ANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       422 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      .+.|...++.-|+..-.|..++.+.++.+
T Consensus       705 R~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  705 REAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            99999999999999999999888877664

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.10  E-value=1.1e-05  Score=79.08  Aligned_cols=99  Identities=15%  Similarity=0.024  Sum_probs=89.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      .-.+.-.++-+-..|++++|++...+||+..|+.+++|+..|.++-.+|++.+|.+..+.|..+|+.+--.-...+.-+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            34567778888899999999999999999999999999999999999999999999999999999988876677788889


Q ss_pred             HhhhHHHHHHHHHHhhccC
Q 012683          414 LLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~  432 (458)
                      +.|+.++|.+.+...-+-+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999987775543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.10  E-value=4.4e-06  Score=49.10  Aligned_cols=34  Identities=32%  Similarity=0.554  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      +++|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.10  E-value=0.0021  Score=69.10  Aligned_cols=331  Identities=15%  Similarity=0.050  Sum_probs=185.4

Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHH
Q 012683           98 ARQGHTETAKYLFEHGANPTIPSNLGA-TALHHSAGIGNIELLT----YLLSKGAEVDSESDAGTPLIWAAGHGQQEAVK  172 (458)
Q Consensus        98 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~  172 (458)
                      +..|..+-...+.+.-..   .+..-. +.|...+..|+.+-+.    .+.+.|...+... ..+.+...+..|..+.+.
T Consensus       417 ~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t-ynsLI~~y~k~G~vd~A~  492 (1060)
T PLN03218        417 KKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL-YTTLISTCAKSGKVDAMF  492 (1060)
T ss_pred             HHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCcCHHHHH
Confidence            345655554444443322   222222 3455556677765444    4445554432111 124566677788776544


Q ss_pred             HH----HhcCCCCCCCCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHH---
Q 012683          173 VL----LEHHANPNAETEDNITPLLSAVAAGSLTC----LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK---  241 (458)
Q Consensus       173 ~L----l~~~~~~~~~~~~~~t~l~~a~~~~~~~~----~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~---  241 (458)
                      .+    .+.|..++...  -.+.+...+..|+++-    ++.+.+.|..++... -++.+...+..|..+-+..+++   
T Consensus       493 ~vf~eM~~~Gv~PdvvT--ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT-YnsLI~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        493 EVFHEMVNAGVEANVHT--FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV-FNALISACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHHHHHcCCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33    34554443211  1234555677777653    455556676666431 2355667777788765555543   


Q ss_pred             ---cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCC
Q 012683          242 ---AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKA  318 (458)
Q Consensus       242 ---~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  318 (458)
                         .|..++..  .-.+-+...+..|+.+-+.-+++.-......++....+.+-...... ...+....+.+.....+..
T Consensus       570 ~~~~gi~PD~v--TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~  646 (1060)
T PLN03218        570 AETHPIDPDHI--TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVK  646 (1060)
T ss_pred             HhcCCCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Confidence               23333321  12244556677788665544432211111111111111111112222 2233332222221111100


Q ss_pred             CCCCCCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683          319 PMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRAL  397 (458)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  397 (458)
                               +    ....+......+.+.|++++|.+.|.+..+.. +.+...|..+..+|.+.|++++|.+.|++....
T Consensus       647 ---------P----D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~  713 (1060)
T PLN03218        647 ---------P----DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI  713 (1060)
T ss_pred             ---------C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                     0    12345566778889999999999999998864 446788999999999999999999999998764


Q ss_pred             --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhhhhh
Q 012683          398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVT--LDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                        .| +...|..+...|.+.|++++|++.|++...  ..|+...+...+ ..+.+.++.+
T Consensus       714 g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL-~a~~k~G~le  771 (1060)
T PLN03218        714 KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL-VASERKDDAD  771 (1060)
T ss_pred             CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHCCCHH
Confidence              45 567799999999999999999999998664  456655544444 4445455443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.09  E-value=0.00011  Score=60.06  Aligned_cols=98  Identities=18%  Similarity=0.081  Sum_probs=79.6

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----------------------hhHHHhHHHHHHhhCCHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----------------------ATLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      ...+.+...|......++.+.+++.+.+++.+...+                      ..+...++..+...|++++|+.
T Consensus         4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~   83 (146)
T PF03704_consen    4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR   83 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            345666777888888999999999999999875332                      1355567888889999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683          390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGV  429 (458)
Q Consensus       390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  429 (458)
                      .+++++.++|.+-.+|..+-.+|...|++.+|++.|+++.
T Consensus        84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.08  E-value=1e-05  Score=65.62  Aligned_cols=70  Identities=23%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 012683           80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV  149 (458)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  149 (458)
                      +.+||.+|..||||++.|+..|+.+.+.||+.+| +.+...|..|.+++.+|-..|+.++++.|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4578889999999999999999999999999999 788888999999999999999999999888864443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=2.4e-05  Score=70.16  Aligned_cols=113  Identities=20%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH--------------HhC-------
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR--------------ALR-------  398 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--------------~~~-------  398 (458)
                      .|-.+|..|+|++|+..|+.+...+..+..++.++|.|++-+|.|.+|.....+|-              +++       
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            47789999999999999999999877788999999999999999999998776653              121       


Q ss_pred             -----CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          399 -----PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       399 -----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                           .+..+-...+|.+++..-.|++|++.|++.+..+|+.......++.|+.++.=+
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYy  201 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYY  201 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchh
Confidence                 112344567899999999999999999999999999999999999998877543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.05  E-value=1.1e-05  Score=47.35  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=17.5

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD  400 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  400 (458)
                      .+|+.+|.++..+|++++|++.|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.01  E-value=9.4e-06  Score=47.64  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      +++++.+|.++...|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=4.6e-05  Score=69.56  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=78.5

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH-HHHHHHHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF-DEAANAFY  426 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~  426 (458)
                      +.+.+|.-.|++..+..|.++.++..+|.|++.+|+|++|.+.+.+|+..+|+++.++.+++.+...+|+. +.+.+++.
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            47999999999988888889999999999999999999999999999999999999999999999999999 55666777


Q ss_pred             HhhccCCCcHHHH
Q 012683          427 EGVTLDPENKELV  439 (458)
Q Consensus       427 ~a~~~~p~~~~~~  439 (458)
                      +....+|+++-..
T Consensus       261 qL~~~~p~h~~~~  273 (290)
T PF04733_consen  261 QLKQSNPNHPLVK  273 (290)
T ss_dssp             HCHHHTTTSHHHH
T ss_pred             HHHHhCCCChHHH
Confidence            7777899987654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.98  E-value=6.7e-06  Score=83.96  Aligned_cols=81  Identities=32%  Similarity=0.466  Sum_probs=46.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      |.|+||.|+..|..-++++|++. |+++|..+..|.||+|.+...|+...+..|+++|++.+..+..|.+++++|....+
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            45556666666666556555555 55555555556666666666666555555556665555555556666655544433


Q ss_pred             HH
Q 012683          136 IE  137 (458)
Q Consensus       136 ~~  137 (458)
                      .+
T Consensus       735 ~d  736 (785)
T KOG0521|consen  735 AD  736 (785)
T ss_pred             cc
Confidence            33

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.97  E-value=4.2e-05  Score=58.45  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc-H---HHHHHHHHHHHH
Q 012683          373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN-K---ELVFAFREAVEA  448 (458)
Q Consensus       373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~---~~~~~l~~~~~~  448 (458)
                      .-|.+....|+.+.|++-|.+++.+.|..+.+|.++++++...|+.++|++++.+|+.+..+. .   +++...+.++..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            357788889999999999999999999999999999999999999999999999999985443 2   345556666666


Q ss_pred             hhhhh
Q 012683          449 GRKFH  453 (458)
Q Consensus       449 ~~~~~  453 (458)
                      +++-+
T Consensus       128 ~g~dd  132 (175)
T KOG4555|consen  128 LGNDD  132 (175)
T ss_pred             hCchH
Confidence            65543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.1e-05  Score=72.36  Aligned_cols=126  Identities=18%  Similarity=0.297  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-----------C--------chhHHHhHHHHHHhhCCHHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-----------S--------DATLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      .....++..++.|+..|++++|.+|...|.++.+.-.           +        -..++.+.+.+-++++.+..|+.
T Consensus       217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~  296 (372)
T KOG0546|consen  217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF  296 (372)
T ss_pred             hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence            4456677888899999999999999999999886421           1        12467789999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ....++..++...++||+++..+..+.++++|+++++.+....|++.++...+..+.........
T Consensus       297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~  361 (372)
T KOG0546|consen  297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR  361 (372)
T ss_pred             ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888777666554443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.93  E-value=2.6e-05  Score=63.41  Aligned_cols=74  Identities=19%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCC
Q 012683          178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG-ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDE  251 (458)
Q Consensus       178 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~  251 (458)
                      +.++|.+|..|||++++|+.-|+.+.+.+|+.+| +.+... ..|.+++.+|-+.|..++|..|.++-.+-+..+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            3567788888888888888888888888888888 666666 6688888888888888888888876555444433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.0001  Score=70.57  Aligned_cols=115  Identities=19%  Similarity=0.164  Sum_probs=65.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      .+++..-+.+-..++|++|.....+.+...|++..++...-.|.++.++|++|+...++=..+...+. ..|..|.|+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence            56777777777888888888888888888777766666555666666666666533322221111111 11455555555


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ++..++|+..++   -+++.+..+....++++.++++++
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~yd  127 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYD  127 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHH
Confidence            555555555555   223444444445555555555444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.90  E-value=1.1e-05  Score=82.33  Aligned_cols=88  Identities=40%  Similarity=0.548  Sum_probs=73.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683          186 EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (458)
Q Consensus       186 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  264 (458)
                      ..|.|+||.|+..+...++++|++.|+++|.. ..|+||+|.+...|+...+..|+++|++++..+.+|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45688899999999999999999999988877 67889999999999999999999999999999999999999887666


Q ss_pred             CHHHHHhhc
Q 012683          265 NREAVEILF  273 (458)
Q Consensus       265 ~~~~v~~Ll  273 (458)
                      +.+++-++.
T Consensus       734 ~~d~~~l~~  742 (785)
T KOG0521|consen  734 NADIVLLLR  742 (785)
T ss_pred             cccHHHHHh
Confidence            666555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=7.6e-05  Score=65.35  Aligned_cols=85  Identities=20%  Similarity=0.206  Sum_probs=78.0

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFRE  444 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~  444 (458)
                      .|+.|.-+++.|+|.+|...|..=++..|++   +.++|-||.+++..|+|++|...|..+++..|+.   +++.+.++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            8999999999999999999999999999976   6899999999999999999999999999988865   688999999


Q ss_pred             HHHHhhhhhcC
Q 012683          445 AVEAGRKFHGT  455 (458)
Q Consensus       445 ~~~~~~~~~~~  455 (458)
                      ++..+++.+++
T Consensus       224 ~~~~l~~~d~A  234 (262)
T COG1729         224 SLGRLGNTDEA  234 (262)
T ss_pred             HHHHhcCHHHH
Confidence            99998876654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.87  E-value=0.00021  Score=53.67  Aligned_cols=94  Identities=22%  Similarity=0.285  Sum_probs=74.8

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCC------------chhHHHhHHHHHHhhCCHHHHHHHHHHHHH-------h
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS------------DATLLSNRSLCWIRLGQAEHALADAKACRA-------L  397 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~  397 (458)
                      ....|...++.|.|++|...|.+|++...+            +.-++-.++.++..+|+|++++...++++.       +
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            445677778899999999999999986422            345677889999999999999999988884       3


Q ss_pred             CCC----ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          398 RPD----WPKACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       398 ~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +.+    |..+-+.+|.++..+|+.++|+..|+.+.+
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            444    567778999999999999999999998864

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.86  E-value=0.00056  Score=59.42  Aligned_cols=102  Identities=22%  Similarity=0.234  Sum_probs=76.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH---HHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK---ACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~  407 (458)
                      +..|.+.|...++.|+|++|+..|++.....|..   ..+...++.++++.+++++|+..+++=+++.|+++.   ++|-
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            5678999999999999999999999999887765   468889999999999999999999999999888753   3444


Q ss_pred             HHHHHHHh--------hhHHHHHHHHHHhhccCCCc
Q 012683          408 EGAALRLL--------EKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       408 ~a~~~~~~--------~~~~~A~~~~~~a~~~~p~~  435 (458)
                      +|.+++..        .--.+|...|+..+...|+.
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            45444332        22344555555555555543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.85  E-value=7.8e-05  Score=48.14  Aligned_cols=49  Identities=12%  Similarity=0.108  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      +.+|.+|..++++|+|++|+.+.+.+++.+|++.++......+..++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4577888888888888888888888888888888888877777766643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.85  E-value=3.5e-05  Score=78.46  Aligned_cols=128  Identities=22%  Similarity=0.132  Sum_probs=94.0

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHH
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATAL  127 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L  127 (458)
                      .......|.|.+|.++..+...+++.+++..+......+.+|+..+|+++ .++.++.-+++ -.|..++++|..|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            34455678899999999999999999888545555566777888888844 44555544443 46788899999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCC------CC-CCCcHHHHHHhCCCHHHHHHHHhc
Q 012683          128 HHSAGIGNIELLTYLLSKGAEVDS------ES-DAGTPLIWAAGHGQQEAVKVLLEH  177 (458)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~------~~-~~~t~l~~A~~~~~~~~~~~Ll~~  177 (458)
                      |+|...|+..++..|++.|.+...      .. .+.|+-.+|-.+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999977655421      11 133777778788888777777665

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.85  E-value=4.6e-05  Score=68.53  Aligned_cols=66  Identities=24%  Similarity=0.377  Sum_probs=58.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG  156 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  156 (458)
                      .--|..||+.|..+.|++|++.|.++|..|.+..+||.+|+-.||.+++++|+++|+-.+.....|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G  102 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG  102 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc
Confidence            345889999999999999999999999999999999999999999999999999998765444333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=2.6e-05  Score=66.18  Aligned_cols=81  Identities=7%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          374 RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      -|..++...+|..|+..|.+||.++|..+..|-+++.+|.++.+|+....+-++|+++.|+....++-++.++.+.+.+.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            35677778899999999999999999999999999999999999999999999999999999999999999998887665


Q ss_pred             c
Q 012683          454 G  454 (458)
Q Consensus       454 ~  454 (458)
                      +
T Consensus        96 e   96 (284)
T KOG4642|consen   96 E   96 (284)
T ss_pred             H
Confidence            4

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.83  E-value=0.00022  Score=65.29  Aligned_cols=119  Identities=18%  Similarity=0.151  Sum_probs=89.3

Q ss_pred             HHHHHHHHhhhHHHhh-ccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC----
Q 012683          332 KKAAEAKARGDEAFKQ-KDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALRPD----  400 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----  400 (458)
                      .-+..+.+.|..+... |++++|++.|++|+++...      -..++...|.++.++|+|++|+..|+++....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            5577888999999999 9999999999999997322      1357789999999999999999999999875322    


Q ss_pred             --Ch-HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhhh
Q 012683          401 --WP-KACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGRK  451 (458)
Q Consensus       401 --~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~  451 (458)
                        .. +.++..+.++...||+-.|.+.|.+....+|..   .+.. .+..+.....+
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~-~~~~l~~A~~~  247 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK-FLEDLLEAYEE  247 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH-HHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH-HHHHHHHHHHh
Confidence              12 345678889999999999999999999998853   3333 34444444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.80  E-value=3e-05  Score=64.77  Aligned_cols=86  Identities=29%  Similarity=0.326  Sum_probs=77.6

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      .+..++.||..|-.+|-+.-|.-+|++++.+.|+-+.++..+|.-+...|+|+.|.+.|.-.++++|.+.-++.+.+..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            46778899999999999999999999999999999999999999999999999999999999999999998888877665


Q ss_pred             HHhhhh
Q 012683          447 EAGRKF  452 (458)
Q Consensus       447 ~~~~~~  452 (458)
                      .-.+++
T Consensus       144 YY~gR~  149 (297)
T COG4785         144 YYGGRY  149 (297)
T ss_pred             eecCch
Confidence            544443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.79  E-value=0.00013  Score=57.67  Aligned_cols=84  Identities=15%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH---HHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE---LVF  440 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~  440 (458)
                      .+..++..|...++.|+|.+|++.|+.+...-|.   ...+.+.+|.+|+..++|++|+..+++.++++|+++.   ++.
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            4678999999999999999999999999998775   4689999999999999999999999999999998864   455


Q ss_pred             HHHHHHHHhh
Q 012683          441 AFREAVEAGR  450 (458)
Q Consensus       441 ~l~~~~~~~~  450 (458)
                      ..+.+...+.
T Consensus        89 ~~gL~~~~~~   98 (142)
T PF13512_consen   89 MRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHh
Confidence            5555554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.78  E-value=0.0008  Score=61.67  Aligned_cols=125  Identities=11%  Similarity=0.032  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD-WPKACYRE  408 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~  408 (458)
                      ...+++.....|..-+..|+|.+|.....++-+..+.....|..-|.+--++|+++.|=+++.+|-++.++ ....+..+
T Consensus        80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr  159 (400)
T COG3071          80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH
Confidence            34677888889999999999999999999988888777777888888999999999999999999999443 45668899


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +..+...|+++.|...+.++++..|.+++......+++.+.|++++
T Consensus       160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            9999999999999999999999999999999999999998888754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.00047  Score=66.14  Aligned_cols=115  Identities=15%  Similarity=0.152  Sum_probs=89.2

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-------------------
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR-------------------  398 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------------------  398 (458)
                      ++++.++|+.+..++|+..++   ..++.+..+...+|++++++|+|++|++.|+..++-+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            789999999999999999998   5666777899999999999999999999999885322                   


Q ss_pred             -----------CC-ChHHHHHHHHHHHHhhhHHHHHHHHHHhhc--------cCCCcHH-------HHHHHHHHHHHhhh
Q 012683          399 -----------PD-WPKACYREGAALRLLEKFDEAANAFYEGVT--------LDPENKE-------LVFAFREAVEAGRK  451 (458)
Q Consensus       399 -----------p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------~~p~~~~-------~~~~l~~~~~~~~~  451 (458)
                                 |. ..+.+|+.|.++...|+|.+|++.+++|++        -+-++.+       ++..++-++..+|+
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq  239 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ  239 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence                       22 457789999999999999999999999932        2222233       34455556666666


Q ss_pred             hhcC
Q 012683          452 FHGT  455 (458)
Q Consensus       452 ~~~~  455 (458)
                      ..++
T Consensus       240 t~ea  243 (652)
T KOG2376|consen  240 TAEA  243 (652)
T ss_pred             hHHH
Confidence            5543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.72  E-value=0.00046  Score=63.51  Aligned_cols=104  Identities=22%  Similarity=0.390  Sum_probs=88.8

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--------c----------hhHHHhHHHHHHhhCCHHHH
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--------D----------ATLLSNRSLCWIRLGQAEHA  387 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~----------~~~~~~~a~~~~~~~~~~~A  387 (458)
                      ..+...+..+.....|..+|++++|..|+.-|..|+++...        .          ..+--.+..||+++++.+.|
T Consensus       168 ~~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlA  247 (569)
T PF15015_consen  168 FLPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLA  247 (569)
T ss_pred             cChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence            44566777888888899999999999999999999887432        1          12445789999999999999


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 012683          388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGV  429 (458)
Q Consensus       388 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  429 (458)
                      +...-+.|.++|.++.-+++.|.++..+.+|.+|.+.+.-|.
T Consensus       248 Lnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  248 LNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998776654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.71  E-value=0.00013  Score=69.63  Aligned_cols=106  Identities=17%  Similarity=0.163  Sum_probs=95.1

Q ss_pred             hhhHHHh-hccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 012683          340 RGDEAFK-QKDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK  417 (458)
Q Consensus       340 ~g~~~~~-~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  417 (458)
                      .+-.|++ .|+...|+.+++.|+-..|... .-..++|.+.++-|-...|-..+.+++.++...|-.+|-+|.++..+.+
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~  691 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN  691 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence            3444544 4899999999999999998754 4588999999999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          418 FDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       418 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      .+.|++.|+.|++++|+++++...|..+
T Consensus       692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  692 ISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             hHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999999999999998877655

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.70  E-value=0.00024  Score=58.09  Aligned_cols=76  Identities=12%  Similarity=0.052  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHhhhHHH---hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-----------HHHHHHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAF---KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-----------AEHALADAKA  393 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~  393 (458)
                      +...+..-+|.++++..-   ....+++|++.|++||.++|+...+++++|.+|...+.           |++|..+|++
T Consensus        26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence            333445555555555421   33568999999999999999999999999999988664           8899999999


Q ss_pred             HHHhCCCChH
Q 012683          394 CRALRPDWPK  403 (458)
Q Consensus       394 a~~~~p~~~~  403 (458)
                      |...+|++.-
T Consensus       106 Av~~~P~ne~  115 (186)
T PF06552_consen  106 AVDEDPNNEL  115 (186)
T ss_dssp             HHHH-TT-HH
T ss_pred             HHhcCCCcHH
Confidence            9999999875

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.00011  Score=64.55  Aligned_cols=94  Identities=20%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC----CCC--------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR----PDW--------  401 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----p~~--------  401 (458)
                      +....+.|...|+.|+|++|+..|+.|++...-++.+-+++|.|+++.++++.|++...+.+...    |..        
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg  223 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG  223 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence            44567899999999999999999999999999999999999999999999999999999888653    321        


Q ss_pred             -----------------hHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          402 -----------------PKACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       402 -----------------~~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                                       .+++.-.+-++++.|+++.|.+.+..
T Consensus       224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD  266 (459)
T KOG4340|consen  224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD  266 (459)
T ss_pred             CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence                             46667788899999999999988753

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.65  E-value=0.00022  Score=65.34  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC--C----chhHHHhHHHHHHhh-CCHHHHHHHHHHHHHhCC--CC-
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--S----DATLLSNRSLCWIRL-GQAEHALADAKACRALRP--DW-  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p--~~-  401 (458)
                      ..+..+.+ +-..+++.++++|+..|++|+++.-  +    -..++..+|.+|... |++++|++.|.+|+.+-.  +. 
T Consensus        73 ~Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            33444544 4444566699999999999998632  1    246788999999998 999999999999998721  12 


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                         ...+...|.++..+|+|++|++.|++....
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence               456678999999999999999999988764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.63  E-value=5.3e-05  Score=77.18  Aligned_cols=119  Identities=22%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             cHHHHHHhCCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      +.+|+++..+..-.++.+++. |......+.+|.-.+|+++..|.--.+..+.-.|..+++. ..|+||||+|+..|+..
T Consensus       576 lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~  655 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREK  655 (975)
T ss_pred             HHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHH
Confidence            566666666666666666654 4444445555555566533333222222233445555555 55666666666666666


Q ss_pred             HHHHHHHcCCC------CCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          235 IIKCLLKAGAD------PNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       235 iv~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      ++..|++.|++      +......|.|+-.+|..+|+..+.-+|-+.
T Consensus       656 l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  656 LVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            66666655543      233334567777777777777766666544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.61  E-value=0.00011  Score=43.01  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD  400 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  400 (458)
                      .+|+.+|.+|.++|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34556666666666666666666666666553

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.00082  Score=60.57  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             HHHhhccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683          343 EAFKQKDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA  421 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A  421 (458)
                      .+..+++|+.|+..++-...++.+.- ..-.-+|.|++.+|+|++|+..|+-+.+-+--+.+...++|.+++.+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            45678899999999998887765433 55556899999999999999999999998877889999999999999999999


Q ss_pred             HHHHHHh
Q 012683          422 ANAFYEG  428 (458)
Q Consensus       422 ~~~~~~a  428 (458)
                      ...-.+|
T Consensus       111 ~~~~~ka  117 (557)
T KOG3785|consen  111 KSIAEKA  117 (557)
T ss_pred             HHHHhhC
Confidence            9887776

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.56  E-value=0.00014  Score=66.69  Aligned_cols=122  Identities=17%  Similarity=0.205  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CCCC
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRAL----RPDW  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~  401 (458)
                      .+..++=+.|+.|+-.|+|++||..-+.-+++....      -.++.|+|.|++-+|+++.|+++|+.++.+    ...-
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~  272 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT  272 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence            445667789999999999999999887777764332      369999999999999999999999996544    4333


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhhhhh
Q 012683          402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDP------ENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~  453 (458)
                        ...-|-+|..|.-+.+|+.|+.++.+-+++..      ....+.+.|+.++..++.-.
T Consensus       273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~  332 (639)
T KOG1130|consen  273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR  332 (639)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence              45568999999999999999999988665421      34566777787777776543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0021  Score=55.84  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683          349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN  423 (458)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~  423 (458)
                      .+..|.-.|+..-+..|..+.+....|.|++.+|+|++|...++.|+..++++++.+-++-.+-...|.-.++.+
T Consensus       188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence            344555555554444444455555555555555555555555555555555555555555555555554444443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.53  E-value=0.0019  Score=49.92  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=70.9

Q ss_pred             chhHHHhHHHHHHhhC---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683          367 DATLLSNRSLCWIRLG---QAEHALADAKACRA-LRPD-WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA  441 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  441 (458)
                      .....|++|.++....   +..+.+..++..++ -.|. .-+..|.+|..++++++|+.|+.+.+..++.+|++.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4567788888888755   56688889999887 4453 35677899999999999999999999999999999999998


Q ss_pred             HHHHHHHhhh
Q 012683          442 FREAVEAGRK  451 (458)
Q Consensus       442 l~~~~~~~~~  451 (458)
                      -..+..++.+
T Consensus       111 k~~ied~itk  120 (149)
T KOG3364|consen  111 KETIEDKITK  120 (149)
T ss_pred             HHHHHHHHhh
Confidence            8888887765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.52  E-value=0.0016  Score=53.43  Aligned_cols=114  Identities=11%  Similarity=0.111  Sum_probs=94.5

Q ss_pred             hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhhhHHH
Q 012683          342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA-LRPDWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      ...-+.=|.+.......+.++..|+ ..-.+.+|.....+|++.||...|.+++. +--+++.....++.+++..+++.+
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~  142 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA  142 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence            3334445666677777777777776 44567899999999999999999999986 677889999999999999999999


Q ss_pred             HHHHHHHhhccCCC--cHHHHHHHHHHHHHhhhhhcCC
Q 012683          421 AANAFYEGVTLDPE--NKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       421 A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      |...+++..+.+|.  .+.-+..+++++..++++..++
T Consensus       143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae  180 (251)
T COG4700         143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE  180 (251)
T ss_pred             HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence            99999999999986  4677888999999888876543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0018  Score=57.29  Aligned_cols=116  Identities=24%  Similarity=0.191  Sum_probs=96.5

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHH---------------------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA---------------------  393 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~---------------------  393 (458)
                      +.....+......|++.+|...|..++...|++..+...++.||...|+.++|...+..                     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999999999999776655443                     


Q ss_pred             -------------HHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHhh
Q 012683          394 -------------CRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP--ENKELVFAFREAVEAGR  450 (458)
Q Consensus       394 -------------a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~  450 (458)
                                   .+..+|++..+-+.+|..+...|++++|++.+...++.+-  ++..++..+-.++..++
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                         1233899999999999999999999999999988887654  45667777777666655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.48  E-value=0.00013  Score=42.62  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      ++|+.+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            679999999999999999999999999999853

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.47  E-value=0.00099  Score=67.05  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=88.5

Q ss_pred             hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683          342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA  421 (458)
Q Consensus       342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A  421 (458)
                      -.....++|.+|+....+.++..|+.+-+...-|..+.++|+.++|...++..-...+++...+-.+-.+|.+++++++|
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34567788889999999999999998888888888999999999999666666667778888888888899999999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          422 ANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       422 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ...|++++..+|. .+....+=.++.+.+.+.
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk  127 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYK  127 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence            9999999988888 666555555555555443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.41  E-value=0.0043  Score=54.37  Aligned_cols=113  Identities=21%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHH-HHHhhCCHHHHHHHHHHHHHhCC---CChHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSL-CWIRLGQAEHALADAKACRALRP---DWPKACYREGA  410 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~~a~  410 (458)
                      ..+...|......+++.++++.+.+++...+.........+. ++...|++++|...+.+++..+|   .....++.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (291)
T COG0457          96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA  175 (291)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence            334445555555555555555555555555444333333444 55555555555555555555444   23444444444


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCC-cHHHHHHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPE-NKELVFAFREAVE  447 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~  447 (458)
                      .+...++++.|+..+.+++...+. .......++..+.
T Consensus       176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (291)
T COG0457         176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL  213 (291)
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence            455555555555555555555555 3444444444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0022  Score=56.63  Aligned_cols=86  Identities=15%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN  423 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~  423 (458)
                      +.+..+|+.||++++.-.+..|.+...++.+|.||+...+|.+|...|++..++-|...+.-+.-|+.++..+.|.+|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 012683          424 AFYEGV  429 (458)
Q Consensus       424 ~~~~a~  429 (458)
                      ......
T Consensus       100 V~~~~~  105 (459)
T KOG4340|consen  100 VAFLLL  105 (459)
T ss_pred             HHHHhc
Confidence            876554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.0018  Score=56.05  Aligned_cols=114  Identities=16%  Similarity=0.156  Sum_probs=92.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhc----cCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAID----FDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      ..-....|....+.||-+.|-..|+..-+    ++.  ....+..+.+.+|.-..+|.+|...+++.+..||.++.+-.+
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn  291 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNN  291 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhch
Confidence            34456789999999999999999885433    222  234677788889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHH
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVE  447 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~  447 (458)
                      .|.|+.-+|+..+|++..+.++...|..   ....+++..+++
T Consensus       292 KALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  292 KALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence            9999999999999999999999999964   333444444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.00027  Score=64.80  Aligned_cols=119  Identities=19%  Similarity=0.227  Sum_probs=94.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----C--CCChH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRAL----R--PDWPK  403 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~--p~~~~  403 (458)
                      .-.+-.+|..+++.|++...+.+|+.|++...++    ..+|+.+|.+|+.+++|++|+++-..=+-+    .  -...+
T Consensus        17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK   96 (639)
T KOG1130|consen   17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK   96 (639)
T ss_pred             HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence            4457788999999999999999999999998776    468999999999999999999976654432    2  23456


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhhhh
Q 012683          404 ACYREGAALRLLEKFDEAANAFYEGVTLDP------ENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~  452 (458)
                      +--++|..+..+|.|++|+.+-.+-+.+..      ....++++++.++...|+-
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~  151 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC  151 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence            667999999999999999987666554321      2356788888888876654

>PRK10941 hypothetical protein; Provisional

Probab=97.37  E-value=0.0016  Score=58.44  Aligned_cols=71  Identities=20%  Similarity=0.098  Sum_probs=44.3

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA  441 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  441 (458)
                      ..++=.+|.+.++++.|++..+..+.++|+++.-+..+|.+|.++|.+..|+.+++..++..|+++.+...
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            33455566666666666666666666666666666666666666666666666666666666666655433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.36  E-value=0.0013  Score=60.40  Aligned_cols=81  Identities=22%  Similarity=0.125  Sum_probs=52.3

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                      +++..=+...++.+...|+++.+++.+|..+++.+.|.+|-.+|+.|++..|.. ..|.-+|.++..+|+..+|.+.+++
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHH
Confidence            445555555566666666666666666666666666666666666666666633 3466666666666666666666666


Q ss_pred             hh
Q 012683          428 GV  429 (458)
Q Consensus       428 a~  429 (458)
                      ++
T Consensus       387 ~L  388 (400)
T COG3071         387 AL  388 (400)
T ss_pred             HH
Confidence            65

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.34  E-value=0.00076  Score=59.58  Aligned_cols=106  Identities=13%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK  403 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  403 (458)
                      .+..+...+.+....+.+....+.|+.++|...|..|+.++|+++.++...|+....-.+.-+|-+.|.+|+.++|.+.+
T Consensus       106 te~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  106 TENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             cccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            34555566677777788888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH----hhhHHHHHHHHHHhh
Q 012683          404 ACYREGAALRL----LEKFDEAANAFYEGV  429 (458)
Q Consensus       404 ~~~~~a~~~~~----~~~~~~A~~~~~~a~  429 (458)
                      ++.++++-.--    -.++-+.+...+..+
T Consensus       186 ALvnR~RT~plV~~iD~r~l~svdskrd~~  215 (472)
T KOG3824|consen  186 ALVNRARTTPLVSAIDRRMLRSVDSKRDEF  215 (472)
T ss_pred             HHhhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            99988764322    233344444444444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.30  E-value=0.0017  Score=41.96  Aligned_cols=44  Identities=20%  Similarity=0.115  Sum_probs=36.1

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      +.+|.+|..+.++|+|.+|.++++.+++++|++..+.--...+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            46789999999999999999999999999999998776555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.23  E-value=0.00047  Score=64.52  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=61.7

Q ss_pred             HHcCCHHHHHHHHHcCCCcccc-------CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683          196 VAAGSLTCLDLLIQAGANANIV-------AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA  268 (458)
Q Consensus       196 ~~~~~~~~~~~Ll~~g~~~~~~-------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  268 (458)
                      ....-...+++|.+++.+.|..       .-.-|+||+|+..|.-++|.+||+.|+|+..+|..|+||..++.   +.++
T Consensus       399 kk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdV  475 (591)
T KOG2505|consen  399 KKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDV  475 (591)
T ss_pred             hccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHH
Confidence            3444578899999999998876       12569999999999999999999999999999999999999887   4444


Q ss_pred             HHhhc
Q 012683          269 VEILF  273 (458)
Q Consensus       269 v~~Ll  273 (458)
                      -..++
T Consensus       476 k~~F~  480 (591)
T KOG2505|consen  476 KSIFI  480 (591)
T ss_pred             HHHHH
Confidence            44444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.00082  Score=63.09  Aligned_cols=114  Identities=14%  Similarity=0.077  Sum_probs=94.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHh-hccC------CC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHH--------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQA-IDFD------PS--DATLLSNRSLCWIRLGQAEHALADAKACRA--------  396 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~------p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------  396 (458)
                      +..++-+.+.++-.|+|..|.+.+... +.-.      |.  ...+|.|+|.+++++|.|..+..+|.+|++        
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            456788899999999999999986442 2222      22  234678999999999999999999999996        


Q ss_pred             -hCC---------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          397 -LRP---------DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       397 -~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                       +.|         ...+..|+.|..+...|+.-.|.++|.++++..-.+|..|..++.|.-
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence             122         246788999999999999999999999999998889999999988764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.0053  Score=52.71  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK  403 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  403 (458)
                      ++..+-.....--+.+.++.++..|+|-++++..+..+...|.+..+||.||.++...=+.++|..+|.++++++|.-..
T Consensus       220 ~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  220 PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            44445445555568899999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             HHHHHHHHH
Q 012683          404 ACYREGAAL  412 (458)
Q Consensus       404 ~~~~~a~~~  412 (458)
                      +--+--++.
T Consensus       300 vVsrElr~l  308 (329)
T KOG0545|consen  300 VVSRELRLL  308 (329)
T ss_pred             HHHHHHHHH
Confidence            555444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.20  E-value=0.0066  Score=53.13  Aligned_cols=105  Identities=27%  Similarity=0.363  Sum_probs=79.2

Q ss_pred             HHHhhccHHHHHHHHHHhhccCC---CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhhhH
Q 012683          343 EAFKQKDYLMAVDAYTQAIDFDP---SDATLLSNRSLCWIRLGQAEHALADAKACRALRPD-WPKACYREGAALRLLEKF  418 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~  418 (458)
                      .++..|++++|+..|.+++...|   .....+..++..+...+++++|+..+.+++...|. ....+..++..+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            77788888888888888877666   34566666666677788888888888888888888 688888888888888888


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      +.|...+..++...|........++..+.
T Consensus       219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         219 EEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            88888888888877775444444444444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.0027  Score=63.35  Aligned_cols=124  Identities=27%  Similarity=0.333  Sum_probs=106.6

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHh--hCCHHHHHHHHHHHHHhCC
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIR--LGQAEHALADAKACRALRP  399 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~~p  399 (458)
                      .......++..+..+|+.+|++++|..|-..|..++.+-|.    ....+.+.+.|+..  +++|.+++..+.-|+...|
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p  124 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP  124 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc
Confidence            34455678889999999999999999999999999999884    35677788888877  5699999999999999999


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      ...++++.++++|..++.++-|.+.+.-....+|.+..+...+..++..+
T Consensus       125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999998888889999977777555555444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.17  E-value=0.00071  Score=39.06  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683          404 ACYREGAALRLLEKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  434 (458)
                      ++|.+|.++...|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.14  E-value=0.00072  Score=57.25  Aligned_cols=61  Identities=20%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW  401 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  401 (458)
                      +...++.++.+.|.+.|.+++++.|....-|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus         2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3456788999999999999999999999999999999999999999999999999999976

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0028  Score=56.78  Aligned_cols=84  Identities=11%  Similarity=0.044  Sum_probs=74.2

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDW----PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      |-.-|.=|++-.+|..|+..|.++|+.+..+    ...|.++|-|++.+|+|..|+.+..+|++++|.+..++..=+.|+
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            3345778899999999999999999986554    567889999999999999999999999999999999999999999


Q ss_pred             HHhhhhhc
Q 012683          447 EAGRKFHG  454 (458)
Q Consensus       447 ~~~~~~~~  454 (458)
                      .++.++..
T Consensus       164 ~eLe~~~~  171 (390)
T KOG0551|consen  164 LELERFAE  171 (390)
T ss_pred             HHHHHHHH
Confidence            98888543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.10  E-value=0.0025  Score=60.50  Aligned_cols=73  Identities=12%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCcHHHHHHH
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAALRLLEKFDEAANAFYEGVTL-DPENKELVFAF  442 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l  442 (458)
                      +...+|.|..++|+.+||++.++..++..|.  +...++++..++..++.|.++...+.+.-+. -|..+...+..
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa  336 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA  336 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence            3445677777777777777777777776664  4556777777777777777777777665332 24444444433

The molecular function of this protein is uncertain.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.0079  Score=52.43  Aligned_cols=116  Identities=14%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      +.....-+++.+..+++-|.....+..+++  +-..+..+|.++.+    .+++.+|.-.|+.....-|..+.....+|.
T Consensus       138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av  215 (299)
T KOG3081|consen  138 EAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAV  215 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHH
Confidence            344556677888888899999999888876  44566677777776    457999999999999988888889999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      ++..+|+|++|...++.++..++++++...++-.+-.-+|+.
T Consensus       216 ~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  216 CHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999998887776666654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.06  E-value=0.005  Score=45.16  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=27.7

Q ss_pred             HHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683          354 VDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW  401 (458)
Q Consensus       354 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  401 (458)
                      +..++++++.+|++..+.+.+|.++...|++++|++.+-.+++.++++
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            444556666666666666666666666666666666666666666555

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.06  E-value=0.0037  Score=61.43  Aligned_cols=96  Identities=15%  Similarity=0.008  Sum_probs=78.9

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHH-HHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA-CYREG  409 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~~a  409 (458)
                      --++..|..+..+|+.++|++.|++++......    .-.++.+|.|+.-+.+|++|..+|.+..+.+..+... +|..|
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            347889999999999999999999999644332    3578899999999999999999999999976643332 35688


Q ss_pred             HHHHHhhhH-------HHHHHHHHHhhc
Q 012683          410 AALRLLEKF-------DEAANAFYEGVT  430 (458)
Q Consensus       410 ~~~~~~~~~-------~~A~~~~~~a~~  430 (458)
                      .++..+|+.       ++|.+.|+++-.
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            899999999       888888887643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.04  E-value=0.0013  Score=37.96  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=26.3

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPDW  401 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  401 (458)
                      +++++|.++.++|++++|++.|++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57788888888888888888888888888864

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.02  E-value=0.019  Score=52.39  Aligned_cols=115  Identities=12%  Similarity=-0.049  Sum_probs=88.1

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh-hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR-LGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      |....+...+.+..+.|...|.+|....+-...+|...|..-.. .++.+.|...|+.+++.-|.+...+.....-+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            44555556666778999999999997666678999999999777 45666699999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhh
Q 012683          416 EKFDEAANAFYEGVTLDPENK---ELVFAFREAVEAGRK  451 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~  451 (458)
                      ++.+.|...|++++..-|...   .+|........+.|+
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd  122 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD  122 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence            999999999999998877655   455555555555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.02  E-value=0.0032  Score=54.85  Aligned_cols=72  Identities=21%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL  438 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  438 (458)
                      .+.-|++-|...++.|+|++|++.|+++....|..   .++.+.++.++++.++|++|+...++.+++.|+++++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            46789999999999999999999999999987754   6899999999999999999999999999999987654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.01  E-value=0.0067  Score=44.50  Aligned_cols=68  Identities=22%  Similarity=0.130  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhhhhh
Q 012683          386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN--KELVFAFREAVEAGRKFH  453 (458)
Q Consensus       386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~  453 (458)
                      ..+..++++++.+|++..+.|.+|..+...|++++|++.+...++.+++.  ..++..+-.++..+|..+
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            35678899999999999999999999999999999999999999998765  788888888888887643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.0099  Score=51.66  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=99.1

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHH----HhC--CCChHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACR----ALR--PDWPKACYREG  409 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----~~~--p~~~~~~~~~a  409 (458)
                      ..-..+.+.--+.|.-....|.+.++.+ |.++.+...+|.+.++.|+.+.|..+|+.+-    +++  ....-.+.+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3445666777789999999999999998 6689999999999999999999999999543    333  23456678899


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      .+|.-.++|.+|...|.+++..+|.++.+..+.+.|+.-+++..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~  303 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK  303 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888777643

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.0058  Score=54.94  Aligned_cols=117  Identities=11%  Similarity=0.019  Sum_probs=92.8

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCCh---HHHHHHHHHHH
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDWP---KACYREGAALR  413 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~---~~~~~~a~~~~  413 (458)
                      -..+...+.+|++.+|...+.+.++-.|.+.-++-..-.+++.+|+...-...+++.+.. +|+-|   -..--.++.+.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            345566788889999988999999999999888888888888899988888888888876 66553   22335778888


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +.|-|++|.+.-++++++||.+.=+....+.+++.-++..+
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke  227 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE  227 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence            89999999999999999999888887778877775555443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.99  E-value=0.0093  Score=44.80  Aligned_cols=92  Identities=13%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCC-----------HHHHHHHHHHHHHhCCCChHHH
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQ-----------AEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      ++..+|.+|++-+|++..+..+...+++.   .++..-|.++.++..           .-.|++.|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999888766   445556777655432           4578999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          406 YREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       406 ~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      |.+|.=+.....|+++..--++++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99998888888888888888888754

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.98  E-value=0.0013  Score=61.97  Aligned_cols=78  Identities=22%  Similarity=0.293  Sum_probs=70.2

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      +-+++..+++.++|..|+....+||+++|....+|+.+|.+..+++++.+|+.+|++...+.|+.+.+......|...
T Consensus        41 ~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~  118 (476)
T KOG0376|consen   41 FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI  118 (476)
T ss_pred             echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence            345667889999999999999999999999999999999999999999999999999999999999877766665543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.019  Score=54.21  Aligned_cols=116  Identities=16%  Similarity=0.090  Sum_probs=102.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      .+.+...|+--...+++..|.+.|++|+..+..+-.+|...+.+-++......|...+++|+.+-|.-.+.||..-.+-.
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            45577778778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      .+|+...|.+.|++=+...|+ .++|..+-....+.+
T Consensus       153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyk  188 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYK  188 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhh
Confidence            999999999999999999998 455554444444333

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.98  E-value=0.0028  Score=56.16  Aligned_cols=73  Identities=19%  Similarity=0.212  Sum_probs=65.7

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       375 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      |.-..+.|+.++|...|+.|++++|++++++...|.....-.+.-+|-.+|-+|+.+.|.+.++..+.++..-
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP  195 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence            3445578999999999999999999999999999999999999999999999999999999999887765443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.93  E-value=0.0013  Score=55.72  Aligned_cols=62  Identities=31%  Similarity=0.444  Sum_probs=57.5

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       376 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      ....+.++.+.|.+.|.+|+.+-|+|...|+++|......|+++.|.+.|++.++++|++..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            44567889999999999999999999999999999999999999999999999999998743

>PRK10941 hypothetical protein; Provisional

Probab=96.93  E-value=0.017  Score=51.81  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=70.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .-+.+.=..+.+.++|+.|+.+.+..+.+.|+++.-+--||.+|.++|.+..|+.+++.-++..|+.+.+-.-+.++.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            345566667889999999999999999999999999999999999999999999999999999999998877666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.90  E-value=0.0035  Score=56.88  Aligned_cols=118  Identities=15%  Similarity=0.244  Sum_probs=90.5

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------  401 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------  401 (458)
                      +.....|+.+..-+.|+++++.|++|+.+..+.      ..++..+|..+..+.++++|+-+..+|..+-...       
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            445568889999999999999999999875432      3578899999999999999999999998774321       


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHhhhh
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLD------PENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~  452 (458)
                         ..++|+++.++..+|+..+|.++-+++.++.      |-...+.--++.++...++.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~  262 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL  262 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence               3567899999999999999999999887652      22334455566666555543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.019  Score=47.84  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-HHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-KACYREGA  410 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~a~  410 (458)
                      -.....+..++..+++++|+..++.++....+.   +-+-.++|.+....|.+++|+..++..-  ++.|. ..--.+|-
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGD  167 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhh
Confidence            345778889999999999999999999765443   3567789999999999999999877543  23333 34557999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      ++...|+-++|+..|.+++..+++.
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCCh
Confidence            9999999999999999999987443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.0074  Score=58.76  Aligned_cols=99  Identities=15%  Similarity=0.173  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      -.-.-+|+.|..+|+.++|..+++.|...+...|.+      ..+.-+++.||+++.+.+.|++++.+|=+.+|.++-..
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            334568999999999999999999999999987765      34677899999999999999999999999999999888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          406 YREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       406 ~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +..-.+....+.-++|+.+......
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHh
Confidence            8888888999999999998876543

>smart00248 ANK ankyrin repeats

Probab=96.86  E-value=0.0022  Score=35.15  Aligned_cols=27  Identities=56%  Similarity=0.870  Sum_probs=16.6

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCC
Q 012683          220 GATPLHIAADIGSTEIIKCLLKAGADP  246 (458)
Q Consensus       220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~  246 (458)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.84  E-value=0.0083  Score=48.88  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      .....+...+..+...|++++|+..+++++..+|.+-.+|..+-.++...|++.+|++.|.+..+
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34556677777888999999999999999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.84  E-value=0.0021  Score=36.40  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=14.7

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRP  399 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  399 (458)
                      +|+++|.++..++++++|+..++++++++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344445555555555555555555544444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.80  E-value=0.014  Score=47.84  Aligned_cols=72  Identities=10%  Similarity=0.002  Sum_probs=44.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEA  170 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~  170 (458)
                      .-+..|+..+-..|++..-+...+-   -...++.+..||+..+.++|+|+-+.=.    ..+-.+.+..|+...+.++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~----i~~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLH----IYNPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccC----CCCchhhhhhhhhccchhH
Confidence            3456777888888877775543211   1345677788888888888888843211    1112245677777777665

These proteins may be involved in promoting survival of infected macrophages [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.79  E-value=0.0023  Score=37.80  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=10.6

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKA  393 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~  393 (458)
                      |.++|.+|.++|+|++|+..|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444444444444444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.76  E-value=0.0017  Score=38.39  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          404 ACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       404 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +|.++|.+|...|+|++|+++|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999996644

>smart00028 TPR Tetratricopeptide repeats

Probab=96.74  E-value=0.0032  Score=35.59  Aligned_cols=33  Identities=36%  Similarity=0.562  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      .+|+.+|.++...|++++|...|+++++.+|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999988863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.74  E-value=0.1  Score=42.30  Aligned_cols=115  Identities=15%  Similarity=-0.036  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +....+.+........++.+.+...+...--+.|..+.+-..-|..++..|+|.+|++.++.+..-.|.++-+---++.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            34567888888889999999999999988889999999999999999999999999999999999999999888999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ++.+|+.+.=.... ++++..+ ++.+......++.+
T Consensus        88 L~~~~D~~Wr~~A~-evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   88 LYALGDPSWRRYAD-EVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             HHHcCChHHHHHHH-HHHhcCC-ChHHHHHHHHHHHh
Confidence            99999988766543 3554443 56666666665543

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.0036  Score=34.26  Aligned_cols=24  Identities=46%  Similarity=0.671  Sum_probs=10.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGA  114 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~  114 (458)
                      .||+|+|+..++.++++.|++.+.
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            344444444444444444444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.69  E-value=0.02  Score=47.03  Aligned_cols=73  Identities=11%  Similarity=0.061  Sum_probs=48.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683           57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI  136 (458)
Q Consensus        57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  136 (458)
                      ...|..|+.++-+.+++..-+..    ...-...++-+-.||...+.++|+|+-++   ....  .-.+.+.+|...+++
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L----~~~~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDL----ENERYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHh----hcchhHHHHHHHHHHHHccccHHHHHhhc---cCCC--Cchhhhhhhhhccch
Confidence            34567788888888888776541    11123567778889998899999998433   2222  234567788877776


Q ss_pred             HH
Q 012683          137 EL  138 (458)
Q Consensus       137 ~~  138 (458)
                      ++
T Consensus       118 sL  119 (192)
T PF03158_consen  118 SL  119 (192)
T ss_pred             hH
Confidence            65

These proteins may be involved in promoting survival of infected macrophages [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.56  E-value=0.025  Score=55.65  Aligned_cols=106  Identities=11%  Similarity=0.049  Sum_probs=87.2

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhhhHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----PKACYREGAALRLLEKFDEAA  422 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~~~~~~~~~~A~  422 (458)
                      ....+.|.+.++...+..|+..-.++..|..+...|+.++|++.|++++.....+    .-.++.+|.++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4466778889999999999999999999999999999999999999998654444    356789999999999999999


Q ss_pred             HHHHHhhccCCCc-HHHHHHHHHHHHHhhhh
Q 012683          423 NAFYEGVTLDPEN-KELVFAFREAVEAGRKF  452 (458)
Q Consensus       423 ~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~  452 (458)
                      ++|.+..+.+.-. .-+.+..+.|+..+++.
T Consensus       326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999876654 44455556666666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.54  E-value=0.025  Score=61.23  Aligned_cols=121  Identities=14%  Similarity=-0.030  Sum_probs=90.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------h
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------P  402 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~  402 (458)
                      .......|..++..|++++|...++++++..+..     ..++..+|.++...|++++|...+.+++......      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3444457888999999999999999999865442     2466789999999999999999999999763321      2


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--------cHHHHHHHHHHHHHhhhhhc
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPE--------NKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .++..+|.++...|++++|...+++++.+-..        .......++.++...|+.++
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~  591 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE  591 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            45678899999999999999999998875211        12234455566665666544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.54  E-value=0.031  Score=53.14  Aligned_cols=93  Identities=15%  Similarity=0.084  Sum_probs=78.5

Q ss_pred             HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh-HHHHHHHHHHhhcc
Q 012683          353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEK-FDEAANAFYEGVTL  431 (458)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~  431 (458)
                      -...|+.|....+.|..+|++...-..+.+.+.+--..|.++++..|+++..|..-|.=.+..+. .+.|...|.++++.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            34568888888888999999886655566669999999999999999999999999988888877 89999999999999


Q ss_pred             CCCcHHHHHHHHHH
Q 012683          432 DPENKELVFAFREA  445 (458)
Q Consensus       432 ~p~~~~~~~~l~~~  445 (458)
                      +|+.+..+..+=++
T Consensus       170 npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  170 NPDSPKLWKEYFRM  183 (568)
T ss_pred             CCCChHHHHHHHHH
Confidence            99999887765444

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.52  E-value=0.00041  Score=62.26  Aligned_cols=76  Identities=12%  Similarity=0.057  Sum_probs=67.8

Q ss_pred             hhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          380 RLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       380 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|.+++|++.|..||.++|.....|-.+|.++..++....|+.++..|+.++|+...-+...+.+...++++.++
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            4577999999999999999999999999999999999999999999999999999887777777777767666544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.44  E-value=0.049  Score=44.18  Aligned_cols=85  Identities=21%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ..+.....+-...++.+++...+...-.+.|..+..-..-|..+...|+|.+|+..|+......|..+-+.-.++.|+..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            34555666777788999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhh
Q 012683          449 GRKFH  453 (458)
Q Consensus       449 ~~~~~  453 (458)
                      +++..
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            88764

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.40  E-value=0.058  Score=54.89  Aligned_cols=107  Identities=11%  Similarity=0.038  Sum_probs=90.2

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      -+..-+|-.+++.|++++|..+++..-...+++-..+.-+-.||..++++++|+..|+++++.+|. -+..+.+=.+|.+
T Consensus        44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR  122 (932)
T KOG2053|consen   44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR  122 (932)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence            345567888999999999998887777777888888999999999999999999999999999999 8889999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      .+.|..--+.-.+..+..|.++-+.+..
T Consensus       123 ~~~yk~qQkaa~~LyK~~pk~~yyfWsV  150 (932)
T KOG2053|consen  123 EKSYKKQQKAALQLYKNFPKRAYYFWSV  150 (932)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence            9999876666556666778887654433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.39  E-value=0.029  Score=60.75  Aligned_cols=120  Identities=12%  Similarity=0.044  Sum_probs=88.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALRPD-------  400 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-------  400 (458)
                      +..+...|..+...|++++|...+++++.....      ...++.++|.++...|++++|...+++++.+-..       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            445667888889999999999999999976332      1346678899999999999999999999886221       


Q ss_pred             -ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhhh
Q 012683          401 -WPKACYREGAALRLLEKFDEAANAFYEGVTLDPE-----NKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       401 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~~  453 (458)
                       ....+..+|.++...|++++|...+.+++.....     ...++..++.+....++..
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~  629 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD  629 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH
Confidence             1234567899999999999999999998765221     2334444555555555543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.083  Score=45.33  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=74.7

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhh-CCHHHHHHHHHHHHHhCC------CChHH
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRL-GQAEHALADAKACRALRP------DWPKA  404 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p------~~~~~  404 (458)
                      +..+...|++.+..+|+.+++++|++..+-..      -+..+|..|..- .++++|+.+|++|-.--.      ..-+.
T Consensus        77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC  156 (288)
T KOG1586|consen   77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC  156 (288)
T ss_pred             HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence            34445566777999999999999998655433      334677777764 889999999999876432      22366


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA  441 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  441 (458)
                      +...|.--..+++|..|+..|++.....-++.-..+.
T Consensus       157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence            6777777788999999999999887665555544433

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.05  E-value=0.0086  Score=56.41  Aligned_cols=62  Identities=32%  Similarity=0.346  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhCCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           69 TDVCKYLLEELKLDVDT------QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        69 ~~~v~~ll~~~~~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      .+.+++|.+. +...|.      .+..--|+||+|+..|..++|.+||+.|+|+..+|..|.||..++.
T Consensus       404 p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4566677665 544432      2333567888888888888888888888888888888888887765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.99  E-value=0.17  Score=48.58  Aligned_cols=79  Identities=13%  Similarity=0.077  Sum_probs=63.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCChHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDWPKACYREGA  410 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~a~  410 (458)
                      .-.-+..|..+.+.|+.+||++.|...++..|.  ...+..++-.+++.+++|.++...+.+==.+ -|.+....|..|.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344567899999999999999999999988776  4679999999999999999999988885333 3666776676665


Q ss_pred             HH
Q 012683          411 AL  412 (458)
Q Consensus       411 ~~  412 (458)
                      ..
T Consensus       339 Lk  340 (539)
T PF04184_consen  339 LK  340 (539)
T ss_pred             HH
Confidence            44

The molecular function of this protein is uncertain.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.89  E-value=0.054  Score=57.14  Aligned_cols=113  Identities=12%  Similarity=0.046  Sum_probs=89.3

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhC-------CHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLG-------QAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      ..-...+...+.|++|+..|++.-.-.|...   ++.|..|...+..-       .+.+|+.-|++.. -.|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            3345567788899999999999988888754   67788887766532       4666666666543 35777778999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      .|.+|.++|+|+|-+++|.-|++..|++|..-.....+..++.+
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777777666644

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.87  E-value=0.072  Score=37.22  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh---HHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT---LLSNRSLCWIRLGQAEHALADAKACRAL  397 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~  397 (458)
                      ..+....++|-.++...+.++|+..+.++++..++.+.   ++-.+..+|...|+|.+.+++.-+-+.+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667788999999999999999999999998776554   4556678888899999999887776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.85  E-value=0.26  Score=46.71  Aligned_cols=123  Identities=16%  Similarity=0.090  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC----CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--C-C----
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP----SDATLLSNRSLCWIRLGQAEHALADAKACRAL--R-P----  399 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~-p----  399 (458)
                      ...+..+...+..+.+.|.++.|...+.++....+    ..+.+.+..+...-..|+..+|+..++..+.-  . +    
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            45677889999999999999999999999888652    25788889999999999999999999888871  1 1    


Q ss_pred             ---------------------------CChHHHHHHHHHHHHh------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          400 ---------------------------DWPKACYREGAALRLL------EKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       400 ---------------------------~~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                                                 ...++++.+|.-....      +.+++++..|+++++++|+...++..++..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                       0145667777777677      8888899999999999999999999999888


Q ss_pred             HHhhhhh
Q 012683          447 EAGRKFH  453 (458)
Q Consensus       447 ~~~~~~~  453 (458)
                      ..+-+..
T Consensus       303 ~~~~~~~  309 (352)
T PF02259_consen  303 DKLLESD  309 (352)
T ss_pred             HHHHHhh
Confidence            8774443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.83  E-value=0.029  Score=51.16  Aligned_cols=97  Identities=15%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----------DATLLSNRSLCWIRLGQAEHALADAKACRALR------  398 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------  398 (458)
                      +-....|..+-+-.|+++|+.+..+|.++-..          ...+++.++.++.++|+...|.+.+++|.++.      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            45678899999999999999999999886422          23678899999999999999999999998873      


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      |.......-+|-+|...|+.+.|-.-|+.|...
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            334566678999999999999999999998754

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.82  E-value=0.051  Score=46.05  Aligned_cols=112  Identities=23%  Similarity=0.307  Sum_probs=59.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCC----CCCcHHHHH--HHcC
Q 012683          126 ALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETE----DNITPLLSA--VAAG  199 (458)
Q Consensus       126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~----~~~t~l~~a--~~~~  199 (458)
                      .|.-|+...+++-+.-++...      ....+++-+++.++..+++-+|+.+ ......|.    .+..-+-++  ....
T Consensus       156 sledAV~AsN~~~i~~~VtdK------kdA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK------KDAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch------HHHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCC
Confidence            355666666666665555311      1112667777777778888777764 11111111    111122222  2223


Q ss_pred             CHHHHHHHHHcC-CCcccc----CCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 012683          200 SLTCLDLLIQAG-ANANIV----AGGATPLHIAADIGSTEIIKCLLKAGA  244 (458)
Q Consensus       200 ~~~~~~~Ll~~g-~~~~~~----~~g~t~L~~A~~~~~~~iv~~Ll~~g~  244 (458)
                      +..+++..+++| +++|..    +.|.|.|.-|...++.+++..|+++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            455666666666 344433    456666666666666666666666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.73  E-value=0.12  Score=47.35  Aligned_cols=104  Identities=16%  Similarity=0.049  Sum_probs=84.7

Q ss_pred             HHHhhhHHHh-hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHH
Q 012683          337 AKARGDEAFK-QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KACYREGAAL  412 (458)
Q Consensus       337 ~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~  412 (458)
                      +...|..-+. .++.+.|...|+.+++..|.+..+|.....-+...++.+.|...|++++..-|...   ..|-.....-
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE  117 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE  117 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            5666777666 67777799999999999999999999999999999999999999999998876655   5677778888


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVF  440 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~  440 (458)
                      ...|+.+...+.++++.+..|++.....
T Consensus       118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  118 SKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            8999999999999999998888655443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.68  E-value=0.19  Score=47.78  Aligned_cols=108  Identities=15%  Similarity=0.017  Sum_probs=92.9

Q ss_pred             HhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683          345 FKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       345 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      ....+.+.+.+.|+.+|++.|.    .+-+|...|+--++..+...|.+.+-.||-..|.+- .+-..-..-..+++++.
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDR  455 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHH
Confidence            4558899999999999999996    467899999999999999999999999999999653 33334445678899999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      -...|++.+...|.+-.+|..++.+...+|+.+
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd  488 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTD  488 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999988888765

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.67  E-value=0.026  Score=54.60  Aligned_cols=102  Identities=13%  Similarity=0.153  Sum_probs=88.4

Q ss_pred             HHHhhhHHHh-hccHHHHHHHHHHhhccCCCch--hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          337 AKARGDEAFK-QKDYLMAVDAYTQAIDFDPSDA--TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       337 ~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +-..+..|++ +|+..+|+.+|..++...|...  .++..+|.++.++|...+|--.+..|+.-.|....-||.+|.++.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a  294 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA  294 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence            3344555554 4899999999999999988754  578889999999999999999999999999988888999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHH
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKEL  438 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~  438 (458)
                      ++++|......|..+.+..|...+.
T Consensus       295 ml~~~N~S~~~ydha~k~~p~f~q~  319 (886)
T KOG4507|consen  295 MLGEYNHSVLCYDHALQARPGFEQA  319 (886)
T ss_pred             HHhhhhhhhhhhhhhhccCcchhHH
Confidence            9999999999999999999875443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.07  Score=47.21  Aligned_cols=72  Identities=21%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      ++=..+...++++.|+....+.+.++|.++.-...+|.+|.++|.+.-|++++..+++.-|+++.+-....+
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            444556666777777777777777777777767777777777777777777777777777776655444333

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.57  E-value=0.31  Score=41.03  Aligned_cols=102  Identities=22%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC--CCh---
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRP--DWP---  402 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~---  402 (458)
                      ++....+..+|.-|.+-|++++|++.|.++.+.....   ...+++.-.+.+-.+++..+..+..+|-.+-.  .+.   
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            3556778899999999999999999999988876443   46778888888899999999999999876532  221   


Q ss_pred             -HHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          403 -KACYREGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       403 -~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                       +.....|..+...++|.+|.+.|..+....
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence             233456777888999999999998887543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.51  E-value=0.16  Score=39.58  Aligned_cols=76  Identities=12%  Similarity=0.038  Sum_probs=61.1

Q ss_pred             HHHHHhhhHHHhh---ccHHHHHHHHHHhhc-cCCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          335 AEAKARGDEAFKQ---KDYLMAVDAYTQAID-FDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       335 ~~~~~~g~~~~~~---~~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      +..++.+..+...   .+-.+.|..++..++ -.|. .-+..|.+|..++++++|++|+++++..++.+|+|.++.--.-
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~  112 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE  112 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4567777777655   456789999999996 4444 3578899999999999999999999999999999998765443


Q ss_pred             H
Q 012683          410 A  410 (458)
Q Consensus       410 ~  410 (458)
                      .
T Consensus       113 ~  113 (149)
T KOG3364|consen  113 T  113 (149)
T ss_pred             H
Confidence            3

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.50  E-value=0.027  Score=53.33  Aligned_cols=81  Identities=14%  Similarity=0.141  Sum_probs=71.2

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhc---------cCC---------CchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAID---------FDP---------SDATLLSNRSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---------~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      -.+.+.|..+|+-|.|.-++.+|.+|++         +.|         ....+.||.|..|+-.|++-.|.+.|.++++
T Consensus       284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            3457899999999999999999999996         111         2457999999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHh
Q 012683          397 LRPDWPKACYREGAALRLL  415 (458)
Q Consensus       397 ~~p~~~~~~~~~a~~~~~~  415 (458)
                      .--.+|..|.++|.|....
T Consensus       364 vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHhcCcHHHHHHHHHHHHH
Confidence            9999999999999998754

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.38  E-value=0.038  Score=49.32  Aligned_cols=89  Identities=9%  Similarity=0.060  Sum_probs=72.6

Q ss_pred             HHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          357 YTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR-EGAALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       357 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      |.++....|+++.+|...+.--.+.+-|.+--..|.++++..|.+.+.|.. -+.-+...++++.+...|.++++.+|+.
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            555566678888888888877788888888889999999999999888865 6667788889999999999999999998


Q ss_pred             HHHHHHHHHH
Q 012683          436 KELVFAFREA  445 (458)
Q Consensus       436 ~~~~~~l~~~  445 (458)
                      +..|..+-+.
T Consensus       176 p~iw~eyfr~  185 (435)
T COG5191         176 PRIWIEYFRM  185 (435)
T ss_pred             chHHHHHHHH
Confidence            8887665443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.29  E-value=0.65  Score=37.16  Aligned_cols=92  Identities=12%  Similarity=-0.118  Sum_probs=78.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+.+........++.+++...+...=-+.|+.+.+-..-|..++..|+|.+|++.++.+..-.+.++-+---++.|++
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            44556666666678899999988888777899999999999999999999999999999999999999988888999999


Q ss_pred             HhhhHHHHHHHH
Q 012683          414 LLEKFDEAANAF  425 (458)
Q Consensus       414 ~~~~~~~A~~~~  425 (458)
                      .+||.+.=....
T Consensus        90 al~Dp~Wr~~A~  101 (153)
T TIGR02561        90 AKGDAEWHVHAD  101 (153)
T ss_pred             hcCChHHHHHHH
Confidence            999987755443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.29  E-value=0.15  Score=43.38  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             CHHHHHHHHhCC-CCCC----CCCCCCcHHHHHHhCCCHHHHHHHHhcCC
Q 012683          135 NIELLTYLLSKG-AEVD----SESDAGTPLIWAAGHGQQEAVKVLLEHHA  179 (458)
Q Consensus       135 ~~~~~~~Ll~~~-~~~~----~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~  179 (458)
                      +..++++++++| .+++    ..+.+.|.|.-|+..++.+++.+|+++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            345555555555 2222    12223366666666666666666666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.18  E-value=0.52  Score=40.65  Aligned_cols=100  Identities=17%  Similarity=0.093  Sum_probs=73.7

Q ss_pred             HHHhhhHHHhh-ccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------hH
Q 012683          337 AKARGDEAFKQ-KDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------PK  403 (458)
Q Consensus       337 ~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~  403 (458)
                      .++.|..|-.. .++++||.+|++|-+.....      ...+...|..-..+++|.+|++.|+++..-.-++      .+
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K  195 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK  195 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence            44555555555 78899999999988764332      2355566777778999999999999988765544      34


Q ss_pred             HH-HHHHHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683          404 AC-YREGAALRLLEKFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       404 ~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  436 (458)
                      .| +.-|.|+.-..+.=.+...+++...++|...
T Consensus       196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            44 4567778777888888889999999999643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.18  E-value=0.17  Score=54.27  Aligned_cols=108  Identities=10%  Similarity=-0.085  Sum_probs=84.1

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhhhH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAALRLLEKF  418 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~  418 (458)
                      ...|-+.+.+++|.+.|+..++...+...+|...|..+++..+-++|...+.+|++-=|.  +.+..-.-|..-+..|+-
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            344556678888888888888877777888888888888888888888888888887776  666666777788888888


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      +.+...|+..+.-+|...+.|.-+.....+
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik 1646 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIK 1646 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHc
Confidence            888888888888888888877766655444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=0.28  Score=47.97  Aligned_cols=106  Identities=24%  Similarity=0.149  Sum_probs=90.5

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHH-HHHhCCCChHHHHHH------HHHH
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA-CRALRPDWPKACYRE------GAAL  412 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~~------a~~~  412 (458)
                      +.-.+...++...++-....++..+|+++.++.++|.+....|....++..+.+ +....|++..+...+      +..+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            566667778888999999999999999999999999999998888888777777 899999998777666      8888


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      ..+|+..++.....++..+.|.++.....+--.
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            999999999999999999999987665555444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.15  E-value=0.28  Score=39.21  Aligned_cols=81  Identities=20%  Similarity=0.093  Sum_probs=71.4

Q ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       373 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      ....+-...++++++...+...--+-|+.+..-..-|.++...|+|.+|+..|+......+..+-+.-.++.|+..+++.
T Consensus        15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            33444455889999999999999999999999999999999999999999999999888888898999999999988876


Q ss_pred             h
Q 012683          453 H  453 (458)
Q Consensus       453 ~  453 (458)
                      .
T Consensus        95 ~   95 (153)
T TIGR02561        95 E   95 (153)
T ss_pred             H
Confidence            4

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.08  E-value=0.34  Score=42.10  Aligned_cols=90  Identities=20%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             HHHhhccHHHHHHHHHHhhcc----C-CC--chhHHHhHHHHHHhhCCHH-------HHHHHHHHHHHhCCC------Ch
Q 012683          343 EAFKQKDYLMAVDAYTQAIDF----D-PS--DATLLSNRSLCWIRLGQAE-------HALADAKACRALRPD------WP  402 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~----~-p~--~~~~~~~~a~~~~~~~~~~-------~A~~~~~~a~~~~p~------~~  402 (458)
                      .+-....+++|++.|.-|+--    . +.  -+.++..+|.+|..+|+.+       .|++.|.+|+.....      ..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            344456778888888777642    1 11  2567888899999999844       566666666654422      25


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                      ...|.+|...+++|++++|+++|.+.+...
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            788999999999999999999999999653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.07  E-value=0.23  Score=36.78  Aligned_cols=29  Identities=24%  Similarity=0.277  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      .+..++|.++...|++++|+..+++++++
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34455666666666666666666666554

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.00  E-value=0.36  Score=41.92  Aligned_cols=122  Identities=14%  Similarity=0.059  Sum_probs=79.2

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHh-----CCCC
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRAL-----RPDW  401 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~  401 (458)
                      .+..+..-+..+-...+|++|-.++.+|++-..++..      .|-.-|...-.+..+.|+...+++|+.+     .|+-
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            3444555556666678999999999999965544322      3345566666788999999999999877     3444


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHH---HHHHHHHHHHHhhhhhc
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPE---NKE---LVFAFREAVEAGRKFHG  454 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~---~~~~l~~~~~~~~~~~~  454 (458)
                      ...-..+|--..+.-+.++|+..|++++..--.   ...   .....++++-++.++.+
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E  168 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE  168 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence            444444444455677899999999998865322   222   23334455555555544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.16  Score=45.95  Aligned_cols=84  Identities=7%  Similarity=-0.041  Sum_probs=50.8

Q ss_pred             hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhhhHHHH
Q 012683          346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD----WPKACYREGAALRLLEKFDEA  421 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~~a~~~~~~~~~~~A  421 (458)
                      .-|-|.+|.+.-.++++++|.+..+....|.++...+++.++.+.-.+--..--+    ...-|-.-|..+.+.++|+.|
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence            3456666666666666666666666666666666666666666655544322111    133445566666666777777


Q ss_pred             HHHHHHhh
Q 012683          422 ANAFYEGV  429 (458)
Q Consensus       422 ~~~~~~a~  429 (458)
                      ++.|..-+
T Consensus       267 leIyD~ei  274 (491)
T KOG2610|consen  267 LEIYDREI  274 (491)
T ss_pred             HHHHHHHH
Confidence            77666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.96  E-value=0.054  Score=32.85  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=17.9

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRAL  397 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  397 (458)
                      .++.++|.+|...|++++|...+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            35566666666666666666666666654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.96  E-value=4.5  Score=42.67  Aligned_cols=162  Identities=16%  Similarity=0.174  Sum_probs=111.8

Q ss_pred             HHHHHHHcCC-HHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCCCCCCCCCCCchHHHHHH
Q 012683          256 PIQVAAARGN-REAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKA  334 (458)
Q Consensus       256 ~l~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (458)
                      .+..|...|+ .++|++|+=.+.   .......++.+-++.++.++-.+....+...+.                     
T Consensus      1139 Vi~~a~~~~~~edLv~yL~MaRk---k~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~--------------------- 1194 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARK---KVREPYIDSELIFAYAKTNRLTELEEFIAGPNV--------------------- 1194 (1666)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH---hhcCccchHHHHHHHHHhchHHHHHHHhcCCCc---------------------
Confidence            4666777776 478888863322   223344555666666666544444443333331                     


Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--------------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--------------  400 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--------------  400 (458)
                      ..+..-|..+|..+.|+.|--.|.        +.+-|..+|..+..+|+|..|++..++|-...-.              
T Consensus      1195 A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred             hhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence            224567899999999999999885        3567888999999999999999999988644221              


Q ss_pred             -----------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          401 -----------WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       401 -----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                                 +.+-+-.+-.-|...|-|+|-+..++.++-++..+-.....++.++.+.
T Consensus      1267 lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1267 LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence                       1122223455577788899999999999988888888888888887754

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.81  E-value=0.08  Score=39.30  Aligned_cols=57  Identities=28%  Similarity=0.297  Sum_probs=47.2

Q ss_pred             HHHhhccHHHHHHHHHHhhccCCC---------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683          343 EAFKQKDYLMAVDAYTQAIDFDPS---------DATLLSNRSLCWIRLGQAEHALADAKACRALRP  399 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  399 (458)
                      ..++.++|.+|++.+.+..+....         ...+..++|.++...|++++|+..+++|+++-.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            456889999999998888876432         235678899999999999999999999998754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.70  E-value=0.54  Score=44.24  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=79.0

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhcc----CCCchhHHHhHHHHHHh---hCCHHHHHHHHHH-HHHhCCCChHHHHHHH
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDF----DPSDATLLSNRSLCWIR---LGQAEHALADAKA-CRALRPDWPKACYREG  409 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-a~~~~p~~~~~~~~~a  409 (458)
                      .+.--.|-.-.+|+.-++..+..-.+    .++.+.+-+.+|.++.+   .|+.++|++.+.. +....+.+++.|--.|
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            34444566778899888888776555    45567889999999999   9999999999999 5556778899999999


Q ss_pred             HHHHHhh---------hHHHHHHHHHHhhccCCCc
Q 012683          410 AALRLLE---------KFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       410 ~~~~~~~---------~~~~A~~~~~~a~~~~p~~  435 (458)
                      .+|...-         ..+.|+.+|+++.+.+|+.
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            9986543         5688999999999998753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.68  E-value=0.42  Score=45.29  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=74.7

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhcc-CC-C--------------------------------chhHHHhHHHHHHhh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDF-DP-S--------------------------------DATLLSNRSLCWIRL  381 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p-~--------------------------------~~~~~~~~a~~~~~~  381 (458)
                      ...+.+..++..|+..+|+..++..+.. .. .                                ...++..+|.-....
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            3456777888888888888888777761 10 0                                124566666666666


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH-----------------HHHHHHHHhhccCCC
Q 012683          382 ------GQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD-----------------EAANAFYEGVTLDPE  434 (458)
Q Consensus       382 ------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~-----------------~A~~~~~~a~~~~p~  434 (458)
                            +..++++..|.+|++++|++.++|+..|..+...-+.+                 .|+..|.+++.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  78899999999999999999999999998886664333                 378888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.52  Score=41.37  Aligned_cols=107  Identities=13%  Similarity=0.012  Sum_probs=88.6

Q ss_pred             HhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH-HHH
Q 012683          345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALRLLEKFD-EAA  422 (458)
Q Consensus       345 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~-~A~  422 (458)
                      ++.+.-..|+..-..+|.++|.+..+|..|-.+...++ +..+-++++++.++-+|.+.+.|..+-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34467788999999999999999999998877776654 7888899999999999999999999999999999888 777


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          423 NAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      +..+..+..+..+=-+|....=++...+.
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~  162 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKD  162 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence            78888888777766667666666555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=0.52  Score=40.96  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHH----HhC--CCCh
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACR----ALR--PDWP  402 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~----~~~--p~~~  402 (458)
                      ..-.+++-.....-+++.|+..|++++.+-..+      .+.+...+.++.++.+|.+|...+.+-.    +.+  |+-.
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            334556666778889999999999999864332      4577788899999999999998887743    333  3344


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhcc----CCCcHHHHHHHHHHH
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTL----DPENKELVFAFREAV  446 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~  446 (458)
                      +++...-.+|.-..+|..|..+|+...+.    .|++.....+|-..+
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay  238 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY  238 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence            55666666677777999999999997765    234444444443333

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.36  E-value=0.2  Score=45.78  Aligned_cols=62  Identities=19%  Similarity=0.112  Sum_probs=30.1

Q ss_pred             HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      |..+|.+|+.+.|.....|+.+|.++...|+.-.|+-+|-+++-....++.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555554433334445555444444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.26  E-value=0.54  Score=43.91  Aligned_cols=88  Identities=15%  Similarity=0.029  Sum_probs=59.6

Q ss_pred             HHHHhhccCCCchhHHHhHHHHHHhhCC------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHH
Q 012683          356 AYTQAIDFDPSDATLLSNRSLCWIRLGQ------------AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN  423 (458)
Q Consensus       356 ~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~  423 (458)
                      .|++.++.+|.+..+|..+......+-.            .+.-+..+++|++.+|++...+..+-....+..+.+...+
T Consensus         7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen    7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4666677777777777766655554432            3455667777777777777777777677777777777777


Q ss_pred             HHHHhhccCCCcHHHHHHHH
Q 012683          424 AFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       424 ~~~~a~~~~p~~~~~~~~l~  443 (458)
                      -+++++..+|++...|..+-
T Consensus        87 ~we~~l~~~~~~~~LW~~yL  106 (321)
T PF08424_consen   87 KWEELLFKNPGSPELWREYL  106 (321)
T ss_pred             HHHHHHHHCCCChHHHHHHH
Confidence            77777777777766665443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=0.53  Score=42.20  Aligned_cols=59  Identities=12%  Similarity=-0.042  Sum_probs=50.1

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                      +.-+.-+.-....|++.+|...|..+++..|.+.++...++.++...|++++|...+..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            33444555666789999999999999999999999999999999999999888776643

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.10  E-value=0.077  Score=32.16  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      ..++.++|.+|...|++++|+..+++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357889999999999999999999999864

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.09  E-value=2.8  Score=40.05  Aligned_cols=53  Identities=15%  Similarity=0.096  Sum_probs=47.7

Q ss_pred             HHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683          375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       375 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  428 (458)
                      |.-++..|+|.++.-+..=..++.| ++.+|.-+|.+++...+|++|..++...
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3445568999999999999999999 9999999999999999999999998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.27  Score=43.63  Aligned_cols=74  Identities=22%  Similarity=0.280  Sum_probs=65.6

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ..=..+.+.++++.|...-++.+.++|.++.-+--+|.+|.++|-+.-|+.+++..++..|+.+.+-.-++...
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34455677799999999999999999999999999999999999999999999999999999998776655544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.98  E-value=0.12  Score=30.67  Aligned_cols=28  Identities=11%  Similarity=0.032  Sum_probs=14.7

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRAL  397 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~  397 (458)
                      +|..+|.+.+..++|++|+.+|.+++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.94  E-value=1.4  Score=40.47  Aligned_cols=107  Identities=13%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             HHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCc-hhHHHhHHHHHHhhC-------CHHHHHHHHHHHHHhCCCCh
Q 012683          335 AEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLG-------QAEHALADAKACRALRPDWP  402 (458)
Q Consensus       335 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~a~~~~p~~~  402 (458)
                      ...+..|..++.    ..++.+|...|.+|.+..-.. ....+.+|.+|..-.       +...|+..|.++-...  ++
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~  187 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP  187 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH
Confidence            345566776665    459999999999999986444 344778888877642       2337999999988877  88


Q ss_pred             HHHHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          403 KACYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       403 ~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      .+.+.+|.+|..    ..++.+|..+|.++.+...  ....+.++.+
T Consensus       188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~  232 (292)
T COG0790         188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM  232 (292)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            899999988854    3489999999999998765  7777777733

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.86  E-value=0.58  Score=45.85  Aligned_cols=99  Identities=20%  Similarity=0.110  Sum_probs=82.6

Q ss_pred             cHHHHHHHHHHhhccCCCchhHHHh--HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683          349 DYLMAVDAYTQAIDFDPSDATLLSN--RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY  426 (458)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  426 (458)
                      ...-++..+...+.++|.++.+...  ++..+...+....++-.+..++..+|.+..++.++|.+....|....+...+.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344777787788888888876443  58888889999999999999999999999999999999998998888887776


Q ss_pred             H-hhccCCCcHHHHHHHHHHHH
Q 012683          427 E-GVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       427 ~-a~~~~p~~~~~~~~l~~~~~  447 (458)
                      + +....|++.++...+-.+++
T Consensus       126 ~~a~~~~~~~~~~~~~~~~~~~  147 (620)
T COG3914         126 EIAEWLSPDNAEFLGHLIRFYQ  147 (620)
T ss_pred             HHHHhcCcchHHHHhhHHHHHH
Confidence            6 88899999999888844444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.84  E-value=1.8  Score=36.38  Aligned_cols=83  Identities=13%  Similarity=-0.049  Sum_probs=59.8

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-cHHHHHHHHHH
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPE-NKELVFAFREA  445 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~  445 (458)
                      .-..+|..+...+++++|+..++.++..-.+.   .-+-.++|+++..+|.+++|+..+...-  +++ ........+.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhH
Confidence            34467889999999999999999999654433   3455799999999999999999886432  111 23334455666


Q ss_pred             HHHhhhhhc
Q 012683          446 VEAGRKFHG  454 (458)
Q Consensus       446 ~~~~~~~~~  454 (458)
                      +...|+..+
T Consensus       169 ll~kg~k~~  177 (207)
T COG2976         169 LLAKGDKQE  177 (207)
T ss_pred             HHHcCchHH
Confidence            666666544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.71  E-value=0.16  Score=29.83  Aligned_cols=30  Identities=23%  Similarity=0.162  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHH--HHHhhccCC
Q 012683          404 ACYREGAALRLLEKFDEAANA--FYEGVTLDP  433 (458)
Q Consensus       404 ~~~~~a~~~~~~~~~~~A~~~--~~~a~~~~p  433 (458)
                      .++.+|..+...|++++|++.  |+-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445555555555555555555  324444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.63  E-value=0.25  Score=34.90  Aligned_cols=48  Identities=17%  Similarity=0.380  Sum_probs=31.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhC
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEEL   79 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~   79 (458)
                      ..+..|+..|+.++++.+++...                -....|..|+...+.+++++|++++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~----------------~~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK----------------PDNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc----------------cHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            34667777777777777775410                0134577777777777777777764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=2  Score=40.44  Aligned_cols=105  Identities=10%  Similarity=-0.081  Sum_probs=87.1

Q ss_pred             HhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh----H
Q 012683          345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ--AEHALADAKACRALRPDWPKACYREGAALRLLEK----F  418 (458)
Q Consensus       345 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~----~  418 (458)
                      .+..-+++-+.+...++..+|++..+|+.|..+..+.+.  +..=++.+.++++.||.+..+|..+-.+..+...    .
T Consensus        86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~  165 (421)
T KOG0529|consen   86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE  165 (421)
T ss_pred             HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence            344467888889999999999999999999999998774  6899999999999999999999777666655443    4


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      .+-+++-.+++..++.+--+|.....++..+
T Consensus       166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             hhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            6667788888888998888888888887755

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.26  E-value=0.29  Score=47.15  Aligned_cols=76  Identities=14%  Similarity=0.028  Sum_probs=65.5

Q ss_pred             hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh---HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          381 LGQAEHALADAKACRALRPDWPKACYREGAALRLLEK---FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       381 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      .+....|+.+|.++++.-|+....|-++|.++.+.+.   .-.|+.+-..|++++|-...+++.|..++.++++..++-
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL  465 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence            4567889999999999999999999999999988764   445666677789999999999999999999999887653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.18  E-value=0.13  Score=27.61  Aligned_cols=24  Identities=25%  Similarity=0.095  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHH
Q 012683          403 KACYREGAALRLLEKFDEAANAFY  426 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~  426 (458)
                      .+++.+|.++...|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345556666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.13  E-value=0.13  Score=30.52  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +.|..+|.+-...++|+.|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.98  E-value=3.9  Score=37.29  Aligned_cols=106  Identities=14%  Similarity=0.046  Sum_probs=80.7

Q ss_pred             chHHHHHHHHHHHhhhHHHhhc-cHHHHHHHHHHhhccC----CC----------chhHHHhHHHHHHhhCCHH---HHH
Q 012683          327 RPEIKKKAAEAKARGDEAFKQK-DYLMAVDAYTQAIDFD----PS----------DATLLSNRSLCWIRLGQAE---HAL  388 (458)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~----p~----------~~~~~~~~a~~~~~~~~~~---~A~  388 (458)
                      +...+.-+.-+.+-|...+.++ +|++|+..+++|.++.    +.          ...++..++.+|...+.++   +|.
T Consensus        28 ~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~  107 (278)
T PF08631_consen   28 PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL  107 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            3455678899999999999999 9999999999999882    21          1357778899999888765   344


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       389 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                      ...+.+-.--|+.+..++-.-.+....++.+++.+.+.+.+..-
T Consensus       108 ~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  108 NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            44445555568888877655566666889999999998888653

It is also involved in sporulation [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.91  E-value=1.4  Score=44.64  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=41.0

Q ss_pred             cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----hhHHHH
Q 012683          349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALRPDWPKACYREGAALRLL----EKFDEA  421 (458)
Q Consensus       349 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~----~~~~~A  421 (458)
                      ++..|...|.++-+..  ++.+.+.+|.++..-.   ++..|.++|..|.+.  .+..+.+++|.+|..-    -+...|
T Consensus       308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            4555555555555543  4445555555555443   344555555555443  2445555555555322    255555


Q ss_pred             HHHHHHhhccC
Q 012683          422 ANAFYEGVTLD  432 (458)
Q Consensus       422 ~~~~~~a~~~~  432 (458)
                      ..+|+++.+.+
T Consensus       384 ~~~~k~aA~~g  394 (552)
T KOG1550|consen  384 FAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHcc
Confidence            55555555544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.82  E-value=1.6  Score=47.32  Aligned_cols=113  Identities=13%  Similarity=0.043  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...-|...|..++++.+-+.|.+.+.+|+.--|.  +..+....|+.-++.|+.+.+...|+-.+.-.|.-.+.|.-...
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            3456888999999999999999999999999988  77889999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      .-...|+-+-++..|++++.+.=.-..+.+.+..-
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence            99999999999999999998765555555554443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.68  E-value=0.42  Score=28.04  Aligned_cols=32  Identities=16%  Similarity=0.052  Sum_probs=20.0

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHH--HHHHHHhCCC
Q 012683          369 TLLSNRSLCWIRLGQAEHALAD--AKACRALRPD  400 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~--~~~a~~~~p~  400 (458)
                      +.++.+|..+..+|++++|+..  |+-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3456667777777777777777  4366666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.66  E-value=0.68  Score=43.95  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=56.0

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR  395 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  395 (458)
                      +.....+-|.-+|..|+|.+++-+-....++.| ++.+|-.+|.|.+...+|.+|-.++...-
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            366677889999999999999999999999999 89999999999999999999999987654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.34  E-value=0.71  Score=47.08  Aligned_cols=125  Identities=10%  Similarity=0.022  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-----chhHHHhHHHHHHhhCCHHHHHHHHHHH----------
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-----DATLLSNRSLCWIRLGQAEHALADAKAC----------  394 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------  394 (458)
                      +.+.+..+..+...+--.+++-+++..++.|+++...     --..|++.|.-+...++.+.|+++|+++          
T Consensus       815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm  894 (1416)
T KOG3617|consen  815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM  894 (1416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence            3344444444444433333334444444444444322     1357899999999999999999999984          


Q ss_pred             HHhCCCChHHH----------HHHHHHHHHhhhHHHHHHHHHHhh---------------------ccCCCcHHHHHHHH
Q 012683          395 RALRPDWPKAC----------YREGAALRLLEKFDEAANAFYEGV---------------------TLDPENKELVFAFR  443 (458)
Q Consensus       395 ~~~~p~~~~~~----------~~~a~~~~~~~~~~~A~~~~~~a~---------------------~~~p~~~~~~~~l~  443 (458)
                      +.-+|...+-|          ---|.-+...|+.+.|+..|..|-                     .....+..+.+.++
T Consensus       895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhla  974 (1416)
T KOG3617|consen  895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLA  974 (1416)
T ss_pred             HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHH
Confidence            23355544444          345777788899999998887762                     22356778888899


Q ss_pred             HHHHHhhhhhc
Q 012683          444 EAVEAGRKFHG  454 (458)
Q Consensus       444 ~~~~~~~~~~~  454 (458)
                      +.|+..++..+
T Consensus       975 R~YEn~g~v~~  985 (1416)
T KOG3617|consen  975 RMYENDGDVVK  985 (1416)
T ss_pred             HHhhhhHHHHH
Confidence            98888877654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.21  E-value=1.9  Score=39.21  Aligned_cols=62  Identities=8%  Similarity=-0.064  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      |..+|.+|+.+.|++...|..+|.++...|+.-+|+-+|-+++...-..+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999987654558889999888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.17  E-value=1  Score=43.02  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      -...+..|+.-.|-.-...+++..|.+|.....++.++..+|.|+.|++++.-+=..=..-..+...+-+.+..+|++++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            34456778888888888888999999999999999999999999999998887766544445556666667777777777


Q ss_pred             HHHHHHHhhcc
Q 012683          421 AANAFYEGVTL  431 (458)
Q Consensus       421 A~~~~~~a~~~  431 (458)
                      |...-.-.+-.
T Consensus       376 a~s~a~~~l~~  386 (831)
T PRK15180        376 ALSTAEMMLSN  386 (831)
T ss_pred             HHHHHHHHhcc
Confidence            77665544433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.13  E-value=1.5  Score=39.45  Aligned_cols=63  Identities=17%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      ..++..++..+...|+++.++..+++.+..+|-+-.+|..+=.+|+..|+...|+..|++.-+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            356778899999999999999999999999999999999999999999999999999988755

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.09  E-value=0.59  Score=32.64  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAID  362 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  362 (458)
                      ++.+..+..+|..+-+.|+|.+|+.+|+++++
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45667777778888888888888887766554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.93  E-value=0.24  Score=26.55  Aligned_cols=24  Identities=8%  Similarity=-0.018  Sum_probs=17.9

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAK  392 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~  392 (458)
                      .+.+++|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456777888888888888877665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.75  E-value=1.9  Score=42.80  Aligned_cols=77  Identities=16%  Similarity=0.087  Sum_probs=65.3

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPD------WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      .++-+-|.-++++.+|..+++.|...+..-|.      +.+....++.||..+.+.+.|.+++.+|-+.+|.++-..+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34556788889999999999999999987664      468888999999999999999999999999999888776655


Q ss_pred             HHH
Q 012683          443 REA  445 (458)
Q Consensus       443 ~~~  445 (458)
                      -.+
T Consensus       435 ~~~  437 (872)
T KOG4814|consen  435 LQS  437 (872)
T ss_pred             HHH
Confidence            444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.65  E-value=0.65  Score=28.65  Aligned_cols=25  Identities=12%  Similarity=0.062  Sum_probs=17.8

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          406 YREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       406 ~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +.+|.+|...|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677777777777777777777763

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.57  E-value=0.37  Score=34.01  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=24.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH  112 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  112 (458)
                      ..+..|+..|+.++++.+++. + .+      ...++..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~-~-~~------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK-N-KP------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH-h-cc------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            345555555555555555543 1 10      13345555555555555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.47  E-value=1.1  Score=40.37  Aligned_cols=66  Identities=9%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL  397 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  397 (458)
                      .....+.+++..+...++++.+++.+++.+..+|.+-.+|..+-..|.+.|+...|+..|++.-+.
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            345667788889999999999999999999999999999999999999999999999999998764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.11  E-value=1.6  Score=38.03  Aligned_cols=62  Identities=18%  Similarity=0.044  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhhccCC------CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHH
Q 012683          350 YLMAVDAYTQAIDFDP------SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-KACYREGAA  411 (458)
Q Consensus       350 ~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~a~~  411 (458)
                      +..|.+.|.+|++...      +...+.+.+|.++.+.|++++|++.|.+++...-.+. .....+|+=
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD  209 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            5667777777776542      2357899999999999999999999999998754433 345555543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=90.99  E-value=5  Score=39.73  Aligned_cols=126  Identities=10%  Similarity=-0.064  Sum_probs=105.9

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCCChHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-RPDWPKACY  406 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~  406 (458)
                      +-...+...|......-...|++....-.|++++--...+..+|...+.-....|+..-|-..+.++.++ -|..+..+.
T Consensus       291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L  370 (577)
T KOG1258|consen  291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL  370 (577)
T ss_pred             cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence            3344556677777788889999999999999999999999999999999999999999999999998886 578888888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          407 REGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       407 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      .-+..-...|++..|...|+....--|+..++-........+.+..+
T Consensus       371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~  417 (577)
T KOG1258|consen  371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE  417 (577)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence            88999999999999999999998777888777666666666555543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.46  E-value=4.7  Score=30.59  Aligned_cols=72  Identities=15%  Similarity=0.171  Sum_probs=58.9

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhh-----------HHHHHHHHHHhhccCCCcHHHH
Q 012683          374 RSLCWIRLGQAEHALADAKACRALRPDWP---KACYREGAALRLLEK-----------FDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       374 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      +|.-++..|++-+|++..+..+...+++.   -.+..-|.+++.+..           .-.|+++|.++..+.|..+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999999887766   556677878766653           4568899999999999998888


Q ss_pred             HHHHHH
Q 012683          440 FAFREA  445 (458)
Q Consensus       440 ~~l~~~  445 (458)
                      +.++.=
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            777765

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.42  E-value=2.2  Score=40.41  Aligned_cols=112  Identities=17%  Similarity=0.075  Sum_probs=89.2

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-ch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHh-CCC
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-DA-TLLSNRSLCWIRLGQAEHALADAKACRAL-RPD  400 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~  400 (458)
                      +-..+++..--.+++.....+.++|.|..|.+...-.+.++|. || .+.+.+-...++.++|+=-++.++..... ..+
T Consensus        93 ~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~  172 (360)
T PF04910_consen   93 DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN  172 (360)
T ss_pred             CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh
Confidence            3344556677788999999999999999999999999999998 66 46667777777888888778777776552 112


Q ss_pred             ----ChHHHHHHHHHHHHhhhH---------------HHHHHHHHHhhccCCCc
Q 012683          401 ----WPKACYREGAALRLLEKF---------------DEAANAFYEGVTLDPEN  435 (458)
Q Consensus       401 ----~~~~~~~~a~~~~~~~~~---------------~~A~~~~~~a~~~~p~~  435 (458)
                          -|..-|..+.+++.+++-               +.|...+.+|+...|.-
T Consensus       173 ~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  173 WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence                345678899999999998               89999999999887753

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.00  E-value=5  Score=42.92  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      -.+.+++...-....|++|+..|++ +.-.|.-|--|...|.+|.++|+|+|-++.+.-|++.-|++|..-.-.-.+-++
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (932)
T PRK13184        520 ITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR  598 (932)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence            3344444444444578899999988 556677788899999999999999999999999999999998766555444444


Q ss_pred             hh-----hHHHHHHHHHHhhccCCCcHHHHH
Q 012683          415 LE-----KFDEAANAFYEGVTLDPENKELVF  440 (458)
Q Consensus       415 ~~-----~~~~A~~~~~~a~~~~p~~~~~~~  440 (458)
                      +.     .-..|.....-++..-|.......
T Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (932)
T PRK13184        599 LHESLYKHRREALVFMLLALWIAPEKISSRE  629 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccccchH
Confidence            43     234455555566777776554443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.92  E-value=2.3  Score=40.36  Aligned_cols=32  Identities=16%  Similarity=0.089  Sum_probs=15.5

Q ss_pred             CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683          364 DPSDATLLSNRSLCWIRLGQAEHALADAKACR  395 (458)
Q Consensus       364 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  395 (458)
                      .|.....+..++.++...|+++.|-+.+++|+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRAL   67 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL   67 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444445555555555555554444444443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.82  E-value=5  Score=36.62  Aligned_cols=97  Identities=18%  Similarity=0.065  Sum_probs=71.2

Q ss_pred             HHHhhccHHHHHHHHHHhhccC----CCc----hhHHHhHHHHHHhhC-CHHHHHHHHHHHHHh----CC---CC-----
Q 012683          343 EAFKQKDYLMAVDAYTQAIDFD----PSD----ATLLSNRSLCWIRLG-QAEHALADAKACRAL----RP---DW-----  401 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~----~p---~~-----  401 (458)
                      ..+++|+++.|..+|.|+-.+.    |+.    ...+|+.|....+.+ ++++|+..+++|..+    .+   ..     
T Consensus         2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            3578899999999999987654    332    368899999999999 999999999999887    22   21     


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHH---HHHHHhhccCCCcHHHH
Q 012683          402 --PKACYREGAALRLLEKFDEAA---NAFYEGVTLDPENKELV  439 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~---~~~~~a~~~~p~~~~~~  439 (458)
                        ...+..++.+|...+.++...   ..++.+-.-.|+.+...
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence              345667888888877765444   44444444567766666

It is also involved in sporulation [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=89.77  E-value=17  Score=36.63  Aligned_cols=113  Identities=17%  Similarity=0.134  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------------------chhHHHhHHHHHHhhCCHHHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------------------DATLLSNRSLCWIRLGQAEHALAD  390 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~~a~~~~~~~~~~~A~~~  390 (458)
                      ....-++-+.+-|..-.+..+++.|+...+.|...-..                  +..+|..++..-...|-++.-...
T Consensus       420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v  499 (835)
T KOG2047|consen  420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV  499 (835)
T ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence            34456777888888888999999999999888865211                  245888899999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC--CCcHHHHHH
Q 012683          391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD--PENKELVFA  441 (458)
Q Consensus       391 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~  441 (458)
                      |++.+.+.--.|..-.+.|..+..-.-|++|-+.|++.+.+.  |.-.++|..
T Consensus       500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t  552 (835)
T KOG2047|consen  500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT  552 (835)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence            999999998899999999999999999999999999999885  444555543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.74  E-value=4.2  Score=41.22  Aligned_cols=92  Identities=22%  Similarity=0.166  Sum_probs=66.9

Q ss_pred             HHHhhhHHHhh---ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh----CCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          337 AKARGDEAFKQ---KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL----GQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       337 ~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      .+..|..+...   .++..|..+|..|...  .+..+.+++|.||..-    .+...|..++.+|...+  ++.+.+.++
T Consensus       328 ~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~  403 (552)
T KOG1550|consen  328 QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLG  403 (552)
T ss_pred             HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHH
Confidence            44445555443   3678999999988875  4788999999998763    47899999999999998  555666666


Q ss_pred             HHHHHh-hhHHHHHHHHHHhhccC
Q 012683          410 AALRLL-EKFDEAANAFYEGVTLD  432 (458)
Q Consensus       410 ~~~~~~-~~~~~A~~~~~~a~~~~  432 (458)
                      ..+... ++++.+.-.+...-.+.
T Consensus       404 ~~~~~g~~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  404 AFYEYGVGRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHccccccHHHHHHHHHHHhh
Confidence            655433 88888887666655443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=89.70  E-value=3.6  Score=38.50  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=68.2

Q ss_pred             HHhhccHHHHHHHHHHhhcc---CCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          344 AFKQKDYLMAVDAYTQAIDF---DPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      ....|+|+.|+...+...+.   .++-     ..++.-.+.... --+...|..+..+++++.|+...+-.--+.++++.
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d  276 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRD  276 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence            46779999999987765542   2221     223333333332 23588899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhccCCCcHHHH
Q 012683          416 EKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      |+...+-..++.+-+.+|. +++.
T Consensus       277 ~~~rKg~~ilE~aWK~ePH-P~ia  299 (531)
T COG3898         277 GNLRKGSKILETAWKAEPH-PDIA  299 (531)
T ss_pred             cchhhhhhHHHHHHhcCCC-hHHH
Confidence            9999999999988888775 4433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.38  E-value=11  Score=31.21  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=81.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHHHHhhCCHHHHHHHHHHHH-HhCCCChHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLCWIRLGQAEHALADAKACR-ALRPDWPKACYREG  409 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~a  409 (458)
                      -+....|....++|+-.+|+..|..+-.-.|-    .-.+...-|.++...|.|+....-.+..- .-+|-..-+---||
T Consensus        95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALg  174 (221)
T COG4649          95 LARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALG  174 (221)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHh
Confidence            34567788889999999999999986654432    12345566778888899988776665543 23455555666789


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      .+-++.|+|..|...|..... +.+.+....+.+++...+
T Consensus       175 lAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl  213 (221)
T COG4649         175 LAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL  213 (221)
T ss_pred             HHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence            999999999999999998765 555566655666655544

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.36  E-value=1.6  Score=35.04  Aligned_cols=50  Identities=18%  Similarity=0.042  Sum_probs=27.4

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      .....+|...+..|++.-|...++.++..+|++.++..-++.++..+|.-
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            44455555555666666666666666666666666666666666555543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.32  E-value=5.4  Score=36.59  Aligned_cols=84  Identities=17%  Similarity=0.129  Sum_probs=41.3

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----h
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGAALRL----L  415 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~  415 (458)
                      .+..++|..|+..|.++-..  .++...+.++.+|..    ..+..+|+..|.  ...+..++.+.+.+|.+|..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcc
Confidence            34445555555555554442  122445555555544    223455555555  33334445555555555544    3


Q ss_pred             hhHHHHHHHHHHhhcc
Q 012683          416 EKFDEAANAFYEGVTL  431 (458)
Q Consensus       416 ~~~~~A~~~~~~a~~~  431 (458)
                      .++.+|..+|.+|.+.
T Consensus       127 ~d~~~A~~~~~~Aa~~  142 (292)
T COG0790         127 LDLVKALKYYEKAAKL  142 (292)
T ss_pred             cCHHHHHHHHHHHHHc
Confidence            3555555555555544

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=88.61  E-value=0.94  Score=39.49  Aligned_cols=108  Identities=16%  Similarity=0.092  Sum_probs=66.1

Q ss_pred             HHhhccHHHHHHHHHHhhccC---CCch---------hHHHhHHHHHHhhCCHHH-H-HHHHHHHHH--hCCCChHH--H
Q 012683          344 AFKQKDYLMAVDAYTQAIDFD---PSDA---------TLLSNRSLCWIRLGQAEH-A-LADAKACRA--LRPDWPKA--C  405 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~---p~~~---------~~~~~~a~~~~~~~~~~~-A-~~~~~~a~~--~~p~~~~~--~  405 (458)
                      +|.-|+|+.|++....||+.+   |+..         +-...-+....+.|+.-+ + ...+..+..  -.|+-..+  |
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            478899999999999999975   3321         223334444555555221 1 112222221  13554444  4


Q ss_pred             HHHHHHH---------HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          406 YREGAAL---------RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       406 ~~~a~~~---------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      -..|..+         ...++...|+..+++|++++|. ......+..+..+++..
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~  227 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL  227 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence            4555555         2456888999999999999976 45566667776666543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.56  E-value=8.7  Score=37.16  Aligned_cols=96  Identities=20%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-c--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-D--ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---------  401 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---------  401 (458)
                      ++-..-.|.....-+.|++|...|..|+++... +  +.+..|+|..|++.++-+.-.+.++.   +.|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH
Confidence            344455677777788999999999999987543 3  45566899999998876544444333   34442         


Q ss_pred             -hHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          402 -PKACYREGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       402 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                       ..++|-.|...+..+++.||...+++.++..
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence             4567888999999999999999999999875

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.56  E-value=1  Score=36.04  Aligned_cols=51  Identities=20%  Similarity=0.238  Sum_probs=42.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA  384 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~  384 (458)
                      ++.+.+.+...+.+|+|.-|.+....++..+|++..+...++.++.++|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            456788899999999999999999999999999999999999998777643

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.56  E-value=4.9  Score=34.18  Aligned_cols=77  Identities=12%  Similarity=0.052  Sum_probs=56.8

Q ss_pred             HhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhhhHH
Q 012683          345 FKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD----WPKACYREGAALRLLEKFD  419 (458)
Q Consensus       345 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~~a~~~~~~~~~~  419 (458)
                      +.+-.-++|...|-++-... -++++..+.+|.-|. ..+.++|+..+-+++.+.+.    +++.+..++.+++.+|+++
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            33333456666665533221 246888889988776 67899999999999988543    5899999999999999999


Q ss_pred             HHH
Q 012683          420 EAA  422 (458)
Q Consensus       420 ~A~  422 (458)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=88.45  E-value=4.1  Score=41.91  Aligned_cols=95  Identities=18%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhc----------cCCC----------chhHHHhHHHHHHhhCCHHHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAID----------FDPS----------DATLLSNRSLCWIRLGQAEHALADAKACR  395 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~----------~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  395 (458)
                      .+.+.+.-+-.++|.+.|+++|+++-.          -+|.          ++.+|.--|+-....|+.+.|+.+|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            356666667777788888888876532          2333          44566667888888999999999988764


Q ss_pred             ---------------------HhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          396 ---------------------ALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       396 ---------------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                                           .....+-.+-|.+|+.|...|++.+|+..|.+|-.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence                                 22456778899999999999999999999887643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=88.31  E-value=15  Score=34.76  Aligned_cols=85  Identities=8%  Similarity=0.016  Sum_probs=72.0

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHH---hhhHHHHHHHHHHhh-ccCCCcHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRAL----RPDWPKACYREGAALRL---LEKFDEAANAFYEGV-TLDPENKEL  438 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~-~~~p~~~~~  438 (458)
                      ++.+..++=.+|....+|+.=++..+..-.+    -++.+..-+..|+++-+   .|+.++|+..+..++ ...+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4667778888899999999999988888777    56677888899999999   999999999999944 556778999


Q ss_pred             HHHHHHHHHHhhh
Q 012683          439 VFAFREAVEAGRK  451 (458)
Q Consensus       439 ~~~l~~~~~~~~~  451 (458)
                      +-.++++++.+-.
T Consensus       220 ~gL~GRIyKD~~~  232 (374)
T PF13281_consen  220 LGLLGRIYKDLFL  232 (374)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999997743

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=88.15  E-value=0.77  Score=42.16  Aligned_cols=86  Identities=14%  Similarity=0.035  Sum_probs=71.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      .....+.+...++.+.|..|+..-..+++.++....+++.+++.+..+.++++|++++..+.+..|++....-.+..+-.
T Consensus       275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            34445567777888999999999899999999999999999999999999999999999999999999876666555555


Q ss_pred             HhhhHH
Q 012683          414 LLEKFD  419 (458)
Q Consensus       414 ~~~~~~  419 (458)
                      ...++.
T Consensus       355 ~~~~~~  360 (372)
T KOG0546|consen  355 KKKQYN  360 (372)
T ss_pred             HHHHHH
Confidence            444443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.13  E-value=2.5  Score=40.79  Aligned_cols=61  Identities=20%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHH
Q 012683          346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      +.+.|.+--..|.+++...|+++.+|..-|.-.+..+. .+.|...+.++++.+|++++.|.
T Consensus       117 k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  117 KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            44558899999999999999999999999988888776 89999999999999999998764

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=88.10  E-value=11  Score=34.65  Aligned_cols=89  Identities=17%  Similarity=0.066  Sum_probs=56.7

Q ss_pred             HHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--------------C---------
Q 012683          343 EAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--------------P---------  399 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------------p---------  399 (458)
                      ..++.++..+-|..-..|++++|..+.+|..+|.-  ......+|.+.+++|++..              +         
T Consensus       193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRD  270 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRD  270 (556)
T ss_pred             HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcc
Confidence            44566677777777777888888887777776542  2334455556666555331              0         


Q ss_pred             CChHHH--HHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          400 DWPKAC--YREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       400 ~~~~~~--~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      .+...|  .++|.|-.++|+..+|.+.++...+-.|
T Consensus       271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence            112222  3677888888888888888877766555

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.00  E-value=1  Score=42.85  Aligned_cols=59  Identities=12%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCC---------CchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDP---------SDATLLSNRSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      +.-..+.+.--|||..|++..+- |+++.         -....+|..|.||+.++||.+|++.|...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556677888888887654 33322         2346788888888888888888888888774

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.53  E-value=11  Score=35.75  Aligned_cols=108  Identities=16%  Similarity=0.124  Sum_probs=85.7

Q ss_pred             HhhccH-HHHHHHHHHhhccCCCchhHHHhHHHHHHh-hC-----------CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          345 FKQKDY-LMAVDAYTQAIDFDPSDATLLSNRSLCWIR-LG-----------QAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       345 ~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      -+.+.| .++++.-.+.+..+|+...+|..+-.++.. +-           -.++-+.....+++.+|++.-+|+.+..+
T Consensus        39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~  118 (421)
T KOG0529|consen   39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWV  118 (421)
T ss_pred             HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            344555 458888888888999988888766444433 22           35667788888999999999999999999


Q ss_pred             HHHhhh--HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          412 LRLLEK--FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       412 ~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      +.+.+.  +..-++...++++.+|.+-.+|.....+..+..+.
T Consensus       119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            987764  67788899999999999999999988888877665

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.23  E-value=19  Score=37.65  Aligned_cols=98  Identities=14%  Similarity=0.006  Sum_probs=69.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC---------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS---------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      .+-....+-......+|.+|-....++...-|.         .....-.+|.+....|++++|.+..+.++..=|..   
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~  494 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR  494 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence            334455666667777888877777666654333         13455567888888888888888888888765543   


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          402 --PKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                        ..++...|.+..-.|+++.|+...+.+.+.
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence              456667888888888888888888877765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.08  E-value=13  Score=34.98  Aligned_cols=92  Identities=25%  Similarity=0.213  Sum_probs=70.9

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHH--HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRS--LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..-.++...-.|+|+.|.+.|+..+. +|+. ..+-.+|  .--...|..+.|..+.+.|-..-|.-+=+..-.-.....
T Consensus       123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~  200 (531)
T COG3898         123 HLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA  200 (531)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh
Confidence            34567778889999999999988664 3332 2222232  223458999999999999999999998888877788899


Q ss_pred             hhhHHHHHHHHHHhhc
Q 012683          415 LEKFDEAANAFYEGVT  430 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~  430 (458)
                      .|+|+.|++.++....
T Consensus       201 ~gdWd~AlkLvd~~~~  216 (531)
T COG3898         201 AGDWDGALKLVDAQRA  216 (531)
T ss_pred             cCChHHHHHHHHHHHH
Confidence            9999999998876543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.95  E-value=7.1  Score=32.80  Aligned_cols=64  Identities=13%  Similarity=0.141  Sum_probs=55.0

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      ..++..+|.-|.+.|+.++|++.|.++.......   ...++++-++....+++......+.++-.+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3678899999999999999999999988865433   467788899999999999999999888654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.72  E-value=1.2  Score=31.27  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF  363 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  363 (458)
                      ++.+..+..+|..+-+.|+|++|+.+|..+++.
T Consensus         3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            456777888888888888888888888877763

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.17  E-value=1.6  Score=41.65  Aligned_cols=57  Identities=18%  Similarity=0.144  Sum_probs=44.6

Q ss_pred             HHHHHHhhCCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          374 RSLCWIRLGQAEHALADAKACR--------ALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       374 ~a~~~~~~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +..++.-+|+|..|++.++..=        +.-+-+...||..|++|.++++|.+|++.|...+-
T Consensus       128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777999999999876531        11234567889999999999999999999988763

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.05  E-value=4.1  Score=31.27  Aligned_cols=86  Identities=16%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             hHHHhHH--HHHHhhCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Q 012683          369 TLLSNRS--LCWIRLGQAEHALADAKACRALRPD------------WPKACYREGAALRLLEKFDEAANAFYEGVTL---  431 (458)
Q Consensus       369 ~~~~~~a--~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---  431 (458)
                      .+|..++  .-.+.-|.|++|...|++|....-+            +.-.|-.++.++..+|+|++++..-.+++..   
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            3445443  3455678999999999999977422            2345667999999999999999888887753   


Q ss_pred             ----CCCcHH----HHHHHHHHHHHhhhhhc
Q 012683          432 ----DPENKE----LVFAFREAVEAGRKFHG  454 (458)
Q Consensus       432 ----~p~~~~----~~~~l~~~~~~~~~~~~  454 (458)
                          +.+...    +.+..+.++..+++.++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~e  118 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEE  118 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHH
Confidence                333332    23444555555555443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.88  E-value=2.3  Score=40.80  Aligned_cols=96  Identities=16%  Similarity=0.074  Sum_probs=74.8

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD  419 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  419 (458)
                      .+..+-..|+|+++.....-+-..-..-....--+-....++|++++|+....-.+.-+-..++...--|..-..+|-++
T Consensus       329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d  408 (831)
T PRK15180        329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD  408 (831)
T ss_pred             HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence            34455567899999888776665544444444445566778999999999999998888888888777777888999999


Q ss_pred             HHHHHHHHhhccCCCc
Q 012683          420 EAANAFYEGVTLDPEN  435 (458)
Q Consensus       420 ~A~~~~~~a~~~~p~~  435 (458)
                      +|.-++++.+.++|..
T Consensus       409 ~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        409 KSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHHHhccCChh
Confidence            9999999999988754

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.82  E-value=8.9  Score=33.03  Aligned_cols=62  Identities=19%  Similarity=0.104  Sum_probs=56.3

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      ...+.+.+...+||...+.-++..|.+......+=+.+.-+|+|++|...++-+-++.|++.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            44677889999999999999999999998888888889999999999999999999999874

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.80  E-value=1.7  Score=26.83  Aligned_cols=26  Identities=15%  Similarity=0.115  Sum_probs=23.3

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      .+.+|.+|+.+|+++.|...+++++.
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHH
Confidence            36789999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.56  E-value=6.1  Score=36.23  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhhhHHHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--RPDWPKACYREGAALRLLEKFDEAANA  424 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~  424 (458)
                      .-+|..=...|+-...+.| +|.+-.|++.+..+..-...++...+.....  =..+..++--+|-.+.++|+.++|...
T Consensus       309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a  387 (415)
T COG4941         309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA  387 (415)
T ss_pred             CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence            3467776677776555554 5888889999998888888888888776654  233455566789999999999999999


Q ss_pred             HHHhhccCCCcHHHHHHHHHH
Q 012683          425 FYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       425 ~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      |++++.+.++..+..+.....
T Consensus       388 ydrAi~La~~~aer~~l~~r~  408 (415)
T COG4941         388 YDRAIALARNAAERAFLRQRL  408 (415)
T ss_pred             HHHHHHhcCChHHHHHHHHHH
Confidence            999999998888776655443

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.42  E-value=3  Score=38.53  Aligned_cols=67  Identities=19%  Similarity=0.196  Sum_probs=54.4

Q ss_pred             CCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCC--------CchhHHHhHHHHHHhhCCHHHHHH
Q 012683          323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--------SDATLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      .+.......+.++.+...|+.++..++|++|...|+.|..+..        +...++|..|.+++++++++.++-
T Consensus        30 ~~n~~s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL  104 (400)
T KOG4563|consen   30 TENLESQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL  104 (400)
T ss_pred             CccchhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344446788899999999999999999999999999998743        246788888999888887776654

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=6.1  Score=34.99  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683          350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAE-HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  428 (458)
                      ..+-++.+++.++-+|.+..+|..|-.+....|++. .-++..+.++..+..+..+|-.+--+....+.|+.-+.+..+.
T Consensus        94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L  173 (318)
T KOG0530|consen   94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL  173 (318)
T ss_pred             HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344455666666666777777777666666666666 6666666677766666666666666666666555544444333

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.23  E-value=3.1  Score=37.31  Aligned_cols=58  Identities=17%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                      ++...+..|...|.+.+|++..+++++++|-+...+..+-.++..+|+--.|.+.|.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            4445566677777777777777777777777777777777777777775555555443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.16  E-value=2.3  Score=40.06  Aligned_cols=78  Identities=15%  Similarity=0.063  Sum_probs=58.9

Q ss_pred             hhCCHHHHHHHHHHHHHhC-CCCh--------H--HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          380 RLGQAEHALADAKACRALR-PDWP--------K--ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       380 ~~~~~~~A~~~~~~a~~~~-p~~~--------~--~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ..|+|..|++.|.+.-.++ |..+        .  .--.+..||.++++.+.|+..-.+.+.++|.+..-+...+.|..+
T Consensus       195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~  274 (569)
T PF15015_consen  195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR  274 (569)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence            3455555555555554443 2221        1  113688899999999999999999999999999999999999999


Q ss_pred             hhhhhcCCC
Q 012683          449 GRKFHGTDK  457 (458)
Q Consensus       449 ~~~~~~~~~  457 (458)
                      +.++.++.+
T Consensus       275 LeRy~eAar  283 (569)
T PF15015_consen  275 LERYSEAAR  283 (569)
T ss_pred             HHHHHHHHH
Confidence            999887654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=85.14  E-value=9.8  Score=35.55  Aligned_cols=81  Identities=9%  Similarity=-0.024  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHH--hhhHHHHHHHHH
Q 012683          350 YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-LRL--LEKFDEAANAFY  426 (458)
Q Consensus       350 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~--~~~~~~A~~~~~  426 (458)
                      .+.-+..|++|++.+|++..++..+=.+..+..+.++..+-+++++..+|+++..|...-.. ...  .-.++.-...|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            45678889999999999999999888888899999999999999999999999887643332 222  224556666666


Q ss_pred             Hhhc
Q 012683          427 EGVT  430 (458)
Q Consensus       427 ~a~~  430 (458)
                      +++.
T Consensus       127 ~~l~  130 (321)
T PF08424_consen  127 KCLR  130 (321)
T ss_pred             HHHH
Confidence            6654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.82  E-value=2.8  Score=37.62  Aligned_cols=57  Identities=12%  Similarity=0.057  Sum_probs=50.7

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA  393 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  393 (458)
                      +...+..|...|.|.+|++..+++++++|-+...+..+-..+..+|+--.|++.|.+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            455677788899999999999999999999999999999999999998888777665

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=84.23  E-value=2.2  Score=38.51  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHh-HHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSN-RSLCWIRLGQAEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      |...+.-.-+.+.|.+--..|.++++..|.+.++|.. .+.=+...++++.+...|.++++++|++|..|+
T Consensus       110 w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         110 WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            4444444456678888889999999999999999987 566677789999999999999999999998764

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=83.99  E-value=2.9  Score=45.24  Aligned_cols=122  Identities=14%  Similarity=0.166  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhh--------ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAI--------DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-----  397 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----  397 (458)
                      ...+...++.|+.....+.|.+|.+ ..+++        .+.|..+..|..++..+.+++++++|+....+|.-+     
T Consensus       929 ~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen  929 VSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred             cchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence            3567888999999999999998888 44433        346778899999999999999999999999988644     


Q ss_pred             ---CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhhhhh
Q 012683          398 ---RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------DPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       398 ---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                         -|+....|.+++...+..++...|+..+.++.++        .|.-.....+++.++..+++++
T Consensus      1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred             cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH
Confidence               2556788999999989999999999888877653        3444455566777666555543

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.69  E-value=2  Score=23.87  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=16.9

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRS  375 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a  375 (458)
                      |+++.|...|++++...|.++.+|...+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            3455666666666666666666665544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.16  E-value=14  Score=26.11  Aligned_cols=31  Identities=26%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID  362 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  362 (458)
                      ..+..+..+|..+-+.|+|++|+.+|.++|+
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4456677777777778888888877766554

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.09  E-value=12  Score=36.54  Aligned_cols=25  Identities=36%  Similarity=0.519  Sum_probs=15.7

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQA  360 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~a  360 (458)
                      .|+..|..+...|+++-|.++|+++
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            5666666666666666666666553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.98  E-value=2.5  Score=29.04  Aligned_cols=31  Identities=32%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAID  362 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  362 (458)
                      +.+-.+...|..+-+.|+|++|+..|.++++
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4566677777778888888888888877665

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.73  E-value=16  Score=34.65  Aligned_cols=97  Identities=23%  Similarity=0.188  Sum_probs=76.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----C---C-CCh
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL----R---P-DWP  402 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~---p-~~~  402 (458)
                      -..+...|.-|..-|+++.|+..|.++=+.+...   ...+.|.-.+.+.+|+|.....+..+|.+-    .   + -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4567788999999999999999999976665443   346677778888899999988888888765    1   1 134


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +..-.-|.++..+++|..|..+|..+-.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5667788899999999999999987754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=82.68  E-value=26  Score=35.36  Aligned_cols=97  Identities=11%  Similarity=0.018  Sum_probs=66.0

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC--CChHH---HHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP--DWPKA---CYREGAA  411 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~---~~~~a~~  411 (458)
                      +-..+...-.-|-++..-..|.+.+++---.|.+..|.|.-+..-.-+++|.+.|++.+.+-|  .-.+.   |+.....
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~  559 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK  559 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence            333444444557777777778888877777777888888877777778888888888777753  22222   3444555


Q ss_pred             HHHhhhHHHHHHHHHHhhccCC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      .+.--..+.|...|++|++..|
T Consensus       560 rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  560 RYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HhcCCCHHHHHHHHHHHHhcCC
Confidence            5555577788888888887766

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.06  E-value=11  Score=26.41  Aligned_cols=38  Identities=24%  Similarity=0.209  Sum_probs=19.1

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHH-------HHhCCCChHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKAC-------RALRPDWPKACYRE  408 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a-------~~~~p~~~~~~~~~  408 (458)
                      +..+|.-+-+.|++.+|+..|+++       +...|+.+.-...+
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr   53 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE   53 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            333444444555555555555444       44567666544333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=81.89  E-value=38  Score=34.20  Aligned_cols=84  Identities=14%  Similarity=0.027  Sum_probs=64.2

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      ...+.++...++|....+..+.-........+..|..+-..++.+.|-..|++.+..+|+  .+++.-|+-+++.|-..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   92 (578)
T PRK15490         15 CLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKD   92 (578)
T ss_pred             HHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhH
Confidence            334455566677777666666555556667777888888888888999999999888888  678888888888888888


Q ss_pred             HHHHHH
Q 012683          421 AANAFY  426 (458)
Q Consensus       421 A~~~~~  426 (458)
                      |...++
T Consensus        93 ~~~~~~   98 (578)
T PRK15490         93 AQLILK   98 (578)
T ss_pred             HHHHHH
Confidence            888777

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.82  E-value=2.1  Score=29.96  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF  363 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  363 (458)
                      .++..+..+|...=..|+|++|+..|..|++.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~   35 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence            45666777777777778888888888777764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.18  E-value=43  Score=34.52  Aligned_cols=110  Identities=9%  Similarity=-0.023  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhhHHHhh-ccHHHHHHHHHHhhccCCC--c----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---
Q 012683          331 KKKAAEAKARGDEAFKQ-KDYLMAVDAYTQAIDFDPS--D----ATLLSNRSLCWIRLGQAEHALADAKACRALRPD---  400 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---  400 (458)
                      ..++......|..++.. .+++.|...+++++.+...  .    ...-+.++.++.+.+... |+..++++|+.--+   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            46678889999999955 8999999999999988743  2    234556788888888777 99999999987554   


Q ss_pred             -ChHHHHHHHHH-HH-HhhhHHHHHHHHHHhhccC--CCcHHHHHH
Q 012683          401 -WPKACYREGAA-LR-LLEKFDEAANAFYEGVTLD--PENKELVFA  441 (458)
Q Consensus       401 -~~~~~~~~a~~-~~-~~~~~~~A~~~~~~a~~~~--p~~~~~~~~  441 (458)
                       .....+++-.+ +. ..+++..|++.++....+.  ++++.+...
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~  180 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL  180 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence             22223333322 22 2379999999999887765  455554433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.08  E-value=9.3  Score=40.52  Aligned_cols=61  Identities=10%  Similarity=0.076  Sum_probs=54.2

Q ss_pred             CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          366 SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +.+.+|..+|.+.++.|...+|++.|-+|     ++|..|...-.+..+.|.|++-..++..|-+.
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            45789999999999999999999998664     77888999999999999999999999888754

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.04  E-value=79  Score=33.42  Aligned_cols=86  Identities=17%  Similarity=0.003  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC----CCC
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-----ATLLSNRSLCWIRLGQAEHALADAKACRALR----PDW  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----p~~  401 (458)
                      ...++..--+|.+...++++++|++..+.++..-|.+     ..++...|.+..-.|++++|......+.++.    ..+
T Consensus       455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~  534 (894)
T COG2909         455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH  534 (894)
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence            3456666678889999999999999999999987764     4578888999999999999999999998873    333


Q ss_pred             hHHH--HHHHHHHHHhh
Q 012683          402 PKAC--YREGAALRLLE  416 (458)
Q Consensus       402 ~~~~--~~~a~~~~~~~  416 (458)
                      ..++  +-.+.++...|
T Consensus       535 l~~~~~~~~s~il~~qG  551 (894)
T COG2909         535 LALWSLLQQSEILEAQG  551 (894)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            3322  45677778888

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=80.19  E-value=9.9  Score=28.91  Aligned_cols=54  Identities=19%  Similarity=0.119  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ  383 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  383 (458)
                      ..+++......|-..+-.|+|..|.+...++-+..+..+-.|..-|++-..+|+
T Consensus        55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            456677788888888888999999998888877655555555555666655554

These are membrane protein involved in a late step of protoheme IX synthesis [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-29
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-22
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-23
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-22
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-21
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-20
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-15
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		9e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-16
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-16
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-16
1uoh_A	226	Human Gankyrin Length = 226		7e-16
1uoh_A	226	Human Gankyrin Length = 226		7e-09
1uoh_A	226	Human Gankyrin Length = 226		2e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-16
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-15
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-14
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-14
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		7e-14
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-13
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-12
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-11
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-11
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		8e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		4e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-04
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-10
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-10
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-10
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-10
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-10
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-10
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-10
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-10
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-07
1wao_1	477	Pp5 Structure Length = 477		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-07
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-09
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-09
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-09
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-09
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		4e-09
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		7e-09
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		7e-09
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		7e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		7e-09
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		8e-09
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		4e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-08
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-08
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-08
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		4e-08
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		2e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		8e-07
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		9e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-06
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		3e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		5e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		5e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-06
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		8e-06
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		8e-06
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		9e-06
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		9e-06
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		4e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-05
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		9e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		4e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		5e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-04
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		8e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 12/255 (4%)
Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + +      +G S  V+++K       LH AAR G T+V KYLL+  K
Sbjct: 21  ASFMGHLPIVKNLLQ------RGASPNVSNVK---VETPLHMAARAGHTEVAKYLLQN-K 70
Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
             V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct: 71  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 200 SLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+ +            TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250
Query: 259 VAAARGNREAVEILF 273
           +AA  G+ E V +L 
Sbjct: 251 LAAQEGHAEMVALLL 265

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 108/219 (49%), Gaps = 5/219 (2%)
Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TPL  A+  GH    K L + GA+P + +    T LH +A  G+ E+  YLL   A+V++
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 152 ES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL-TCLDLLIQ 209
           ++ D  TPL  AA  G    VK+LLE++ANPN  T    TPL  A   G + T L LL +
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 210 XXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                       TPLH+AA  G   + + LL+  A PN   ++G  P+ VA    N + V
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 270 EILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNL 308
           ++L P     P  P W  +G      +    Q+E  R+L
Sbjct: 196 KLLLP-RGGSPHSPAW--NGYTPLHIAAKQNQVEVARSL 231

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           L+ AA  G+ +  K L E+GA+P    + G T LH++A  G+ E++  LLSKGA+ ++ +
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD  TPL +AA +G +E VK+LL   A+PNA+  D                         
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG------------------------ 103
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH AA+ G  EI+K LL  GADPN +D DG+ P+ +A   GN E V++L
Sbjct: 104 --------RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
           S+ G  LI AA +G ++ VK LLE+ A+PNA   D  TPL  A   G    + LL+ +  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH AA+ G  EI+K LL  GADPN  D DG+ P+  AA  G++E V++
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 272 LF 273
           L 
Sbjct: 122 LL 123

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 12/214 (5%)
Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           NKR  LH AA  G  D+C ++L +   ++DT  ED  TPL+ AA   H E  KYL + GA
Sbjct: 10  NKRSPLHAAAEAGHVDIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVK 172
                   G+T LH +A  G+ E++ YLLS G  +V+ + D G TP+IWA  +   + VK
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 173 VLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLD----LLIQXXXXXXXXXXXXTPLHIA 227
           +LL   ++ N  + E+NI    +A +     C+D    LL              +PLHIA
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSG----CVDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
           A     + +   L   +D  + +++G+ P+Q A+
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEII 236
           H N   E ++  +PL +A  AG +    +L+Q             TPL  AA+    E +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           K L+KAGA  +  D +G   + +AA +G+ E V+ L 
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Query: 134 GNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           GN + +  LL  GA+V+ S+SD  TPL  AA +G +E VK+LL   A+PNA+  D  TPL
Sbjct: 15  GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 193 LSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
             A   G    + LL+ Q            TPLH+AA+ G  E++K LL  GADPN +D 
Sbjct: 75  HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDS 134
Query: 252 DGQKPIQVAAARGNREAVEIL 272
           DG+ P+ +A   GN E V++L
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 16  QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
           ++ + AA  GN D +K + +   D          +  D++ R  LH+AA+EG  ++ K L
Sbjct: 6   KRLIEAAENGNKDRVKDLIENGAD---------VNASDSDGRTPLHYAAKEGHKEIVKLL 56
Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           + +   DV+ +D DG TPL +AA++GH E  K L   GA+     + G T LH++A  G+
Sbjct: 57  ISK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Query: 136 IELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
            E++  L+SKGA+V+ S+SD  TPL  A  HG +E VK+L
Sbjct: 116 KEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           L+ AA  G+ +  K L E+GA+     + G T LH++A  G+ E++  L+SKGA+V++ +
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD  TPL +AA  G +E VK+L+   A+ NA+  D                         
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG------------------------ 103
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH AA  G  EI+K L+  GAD N +D DG+ P+ +A   GN E V++L
Sbjct: 104 --------RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QXX 211
           S+ G  LI AA +G ++ VK L+E+ A+ NA   D  TPL  A   G    + LLI +  
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 212 XXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH AA  G  EI+K L+  GAD N  D DG+ P+  AA  G++E V++
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 272 LF 273
           L 
Sbjct: 122 LI 123

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 16  QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL 75
           ++ + AA  GN D +K + +   D          +  D++ R  LH AA  G  +V K L
Sbjct: 6   KRLIEAAENGNKDRVKDLIENGAD---------VNASDSDGRTPLHHAAENGHKEVVKLL 56
Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           + +   DV+ +D DG TPL HAA  GH E  K L   GA+     + G T LHH+A  G+
Sbjct: 57  ISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
Query: 136 IELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVL 174
            E++  L+SKGA+V+ S+SD  TPL  A  HG +E VK+L
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 134 GNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           GN + +  L+  GA+V+ S+SD  TPL  AA +G +E VK+L+   A+ NA+  D  TPL
Sbjct: 15  GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 193 LSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDE 251
             A   G    + LLI +            TPLH AA+ G  E++K L+  GAD N +D 
Sbjct: 75  HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134
Query: 252 DGQKPIQVAAARGNREAVEIL 272
           DG+ P+ +A   GN E V++L
Sbjct: 135 DGRTPLDLAREHGNEEVVKLL 155

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 88.2 bits (217), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N R  LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV 173
           +       G T LH +A  G++E++  LL  GA+V+++   G TPL  AA +G  E VK+
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 174 LLE 176
           LLE
Sbjct: 120 LLE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++  TPL  A   G L  + LL++       
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 217 X-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
                 TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L 
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     ++G T LH +A  G++E++  LL  GA+V+++ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA   +  TPL                    
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA+IG  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A +G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            +G TPL  AA  G  E V+VLL++ A+ NA+  D I         GS            
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTI---------GS------------ 114
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AAD G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 115 ---------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NAE     TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 213 XXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEV 131
Query: 272 LF 273
           L 
Sbjct: 132 LL 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+     + G+T LH +A IG+ E++  LL  GA+V++ +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           +D  TPL  AA +G  E V+VLL++ A+ NA+    +TPL                    
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AAD G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            D  TPL  AA  G  E V+VLL+  A+ NA+ +D  TPL                    
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLKAGAD N  D+ G+ P  +A   GN +  E+L
Sbjct: 106 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 81.6 bits (200), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL  A   G L  +++L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 214 XXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLKAGAD N  D+DG  P+ +AA  G+ E VE+L
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     N G T LH +A  G++E++  LL  GA+VD+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA   D +TPL                    
Sbjct: 78  VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 85/180 (47%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     N G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL+H A+ NA   D                         
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG------------------------ 113
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 114 --------HTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA   D  TPL  A + G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D DG  P+ +AA  G+ E VE+
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEV 131
Query: 272 LF 273
           L 
Sbjct: 132 LL 133

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+      LG T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           + G TPL  AA +G  E V+VLL+H A+ NA+  +  TPL                    
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA      TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 213 XXXX-XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AAD G  EI++ LLK GAD N  D +G  P+ +AA  G+ E VE+
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 272 LFPLTSE 278
           L    ++
Sbjct: 132 LLKYGAD 138

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLKAGAD N  D+DG  P+ +AA  G+ E VE+
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 131
Query: 272 LF 273
           L 
Sbjct: 132 LL 133

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            D  TPL  AA  G  E V+VLL+  A+ NA+ +D  TPL                    
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL-------------------- 105
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLKAGAD N  D+ G+ P  +A   G+ +  E+L
Sbjct: 106 ------------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL  A   G L  +++L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 214 XXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLKAGAD N  D+DG  P+ +AA  G+ E VE+L
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
           L++ GA+V++E D+G TPL  AA  G  E V+VLL+H A+ NA  +   TPL  A   G 
Sbjct: 33  LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 201 LTCLDLLIQXXXXXXXXXXXX-TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
           L  +++L++             TPLH+AAD G  EI++ LLK GAD N  D+ G+    +
Sbjct: 93  LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 260 AAARGNREAVEILFPLT 276
           +   GN +  EIL  L 
Sbjct: 153 SIDNGNEDLAEILQKLN 169

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+      +G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA+ ++ ITPL                    
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA+ G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 76  LEELKLDV-------DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           LEELK  +          D+D  T L  A   GHTE  ++L + G       + G + LH
Sbjct: 19  LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
            +A  G  E++  LL KGA+V++ +  G TPL +AA   + E   +LLE  ANP+A+   
Sbjct: 79  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138
Query: 188 NITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADP 246
             T +  A A G+L  + +L+              TPLH+A D    E  K L+  GA  
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
Query: 247 NVTDEDGQKPIQVA 260
            + +++ + P+QVA
Sbjct: 199 YIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G+ E VK LL   A  NA
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + + IL 
Sbjct: 130 ANPDAKDHYEATAMHRAAAKGNLKMIHILL 159

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 98  QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 9/194 (4%)
Query: 76  LEELKLDV-------DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
           LEELK  +          D+D  T L  A   GHTE  ++L + G       + G + LH
Sbjct: 20  LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 79
Query: 129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
            +A  G  E++  LL KGA+V++ +  G TPL +AA   + E   +LLE  ANP+A+   
Sbjct: 80  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 139
Query: 188 NITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADP 246
             T +  A A G+L  + +L+              TPLH+A D    E  K L+  GA  
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
Query: 247 NVTDEDGQKPIQVA 260
            + +++ + P+QVA
Sbjct: 200 YIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G+ E VK LL   A  NA
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 103 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 130
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + + IL 
Sbjct: 131 ANPDAKDHYEATAMHRAAAKGNLKMIHILL 160

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 39  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 99  QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 133

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-E 152
           LL AAR G  +  + L  +GA+     + G T LH +A +G++E++  LL  GA+V++ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           ++  TPL  AA  G  E V+VLL++ A+ NA+    ITP                     
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITP--------------------- 104
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                      L++AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 105 -----------LYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA      TPL  A A G L  +++L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 214 XXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA +G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+L
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 273 F 273
Sbjct: 121 L 121

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
           A  GK D  K  +   K      D+D  T L  A   GHTE  ++L + G       + G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
            + LH +A  G  E++  LL KGA V++ +  G TPL +AA   + E   +LLE  ANP+
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 183 AETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
           A+   + T +  A A G+L  +  LL              TPLH+A D    E  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 242 AGADPNVTDEDGQKPIQVA 260
            GA   + +++ + P+QVA
Sbjct: 194 QGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G+ E VK LL   A+ NA
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + V IL 
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 98  HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
           A  GK D  K  +   K      D+D  T L  A   GHTE  ++L + G       + G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
            + LH +A  G  E++  LL KGA V++ +  G TPL +AA   + E   +LLE  ANP+
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 183 AETEDNITPLLSAVAAGSLTCLD-LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
           A+   + T +  A A G+L  +  LL              TPLH+A D    E  K L+ 
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 242 AGADPNVTDEDGQKPIQVA 260
            GA   + +++ + P+QVA
Sbjct: 194 QGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
           TALH +   G+ E++ +LL  G  V+ + DAG +PL  AA  G  E VK LL   A+ NA
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
             ++  TPL                                H AA     EI   LL+ G
Sbjct: 102 VNQNGCTPL--------------------------------HYAASKNRHEIAVMLLEGG 129
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           A+P+  D      +  AAA+GN + V IL 
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXX-XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +D+ T L  A +AG    ++ L+Q             +PLHIAA  G  EI+K LL  GA
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP 280
             N  +++G  P+  AA++ NR  + ++      +P
Sbjct: 98  HVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANP 132

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V+++ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA      TPL                    
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL-------------------- 117
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                       H+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 118 ------------HLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 33/175 (18%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+     N G T LH +A  G++E++  LL  GA+VD+  
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL++ A+ NA                     D+      
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNA--------------------FDM------ 111
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                    TPLH+AAD G  EI++ LLK GAD N  D+ G+    ++   GN +
Sbjct: 112 ------TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA     +TPL  A  +G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G+ E VE+
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 272 LF 273
           L 
Sbjct: 132 LL 133

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 28  DLLKKIAKQLDDQGKGLSKTVADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDT 85
           D++K     + ++ + L +   D++  +K     LH+AA   + D+ KY + +  + VD 
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI-VDQ 70
Query: 86  QDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS 144
              D   TPL  A RQGH      L ++GA+P++    G + +H +A  G+  ++ YL++
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
           KG +VD     G TPL+WAA             H  +P                    T 
Sbjct: 131 KGQDVDMMDQNGMTPLMWAA----------YRTHSVDP--------------------TR 160
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           L L               T LH A   G+T +I  LL+AGA+ +  +  G+  + +A  R
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 264 GN 265
            N
Sbjct: 221 KN 222

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 86/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            AG TPL  AA  G  E V+VLL++ A+ NA   +                         
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG------------------------ 113
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 114 --------HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR G+ D  + L+     DV+  D  G TPL  AA  GH E  + L +HGA+      +
Sbjct: 21  AARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
           G+T LH +A IG++E++  LL  GA+V++    G TPL  AA  G  E V+VLL+H A+ 
Sbjct: 80  GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 182 NAE 184
           NA+
Sbjct: 140 NAQ 142

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL+H A+ NA                             
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA +G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 109 ---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  GA+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
             G TPL  AA  G  E V+VLL+H A+ NA                             
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA +G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 109 ---VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
           LL AAR G  +  + L  +GA+       G T LH     G++E++  LL   A+V++  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
            +G TPL  AA  G  E V+VLL++ A+ NA                             
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLLKYGADVNA----------------------------- 108
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA+ G  EI++ LLK GAD N  D+ G+    ++   GN +  EIL
Sbjct: 109 ---MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 273 FPLT 276
             L 
Sbjct: 166 QKLN 169

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA  ++ +TPL  A A G L  +++L++    
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 214 XXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  EI++ LLK GAD N  D  G  P+ +AA  G  E VE+L
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 273 F 273
Sbjct: 125 L 125

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA+ E  +TPL  A A G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA IG  EI + LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 58  GALHFAA-REGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
           GA+  AA   G T+    LLE    D++  + DG T L  A    + +  K+L E+GAN 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPL-----IWAAGHGQQEA 170
             P N G   LH +A  G +++  YL+S+GA V +  S+  TPL            Q E 
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADI 230
            +  ++  A    E    +      + +G +                    T LH+AA  
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHIN----------DVRHAKSGGTALHVAAAK 209
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           G TE++K L++A  D N+ D DG  P+  AA  G  EA  IL 
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA  ED +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 62/109 (56%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+ +L + + AL D + C  L P
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA 448
            + K   R+ AAL  ++ + +A + + + + LD   KE    ++  + A
Sbjct: 82  TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ A   GQ + V++L+ + A+ NA  +  +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA +G  EI++ LL+ GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N R  LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
           +       G T LH +A  G++E++  LL  GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +G TPL  AAR GH E  K L E GA+       G T LH +A  G++E++  LL  GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLE 176
           V+++   G TPL  AA +G  E VK+LLE
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 32/117 (27%)
Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXX 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++                             
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---------------------------- 35
Query: 217 XXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
                TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L 
Sbjct: 36  ----RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ A   GQ + V++L+ + A+ NA  +  +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA +G  EI++ LL+ GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ A   GQ + V++L+ + A+ NA  +  +TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 213 XXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA +G  EI++ LL+ GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 1/201 (0%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           +H AA  G     + L+ +    V+    D  +PL  A   GH    K L +HGA     
Sbjct: 7   MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
           +    T L ++   G+ + +  LL  GA V  ESD  +P+  AA  G  E V  L+ +  
Sbjct: 66  TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCL 239
           N + +     TPL  A       C+  L++            +PLH  A   S E+   L
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLL 185
Query: 240 LKAGADPNVTDEDGQKPIQVA 260
           +  GAD    + +G++P+++ 
Sbjct: 186 MDFGADTQAKNAEGKRPVELV 206

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA 183
           + +H +A  G+   L  L+S+G  V+   +D  +PL  A   G    VK+LL+H A  N 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAG 243
            T D  TPL +A  +GS  C++LL+Q            +P+H AA  G  E +  L+  G
Sbjct: 65  VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEILF 273
            + +        P+ +A     R  V+ L 
Sbjct: 125 GNIDHKISHLGTPLYLACENQQRACVKKLL 154

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 5/225 (2%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           +H AA  G     + L+ +    V+    D  +PL  A   GH    K L +HGA     
Sbjct: 63  MHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
           +    T L ++   G+ + +  LL  GA V  ESD  +P+  AA  G  E V  L+ +  
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCL 239
           N + +     TPL  A       C+  L++            +PLH      S E+   L
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLL 241
Query: 240 LKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPK 284
           +  GAD    + +G++P+++         +  LF L  E  S+PK
Sbjct: 242 MDFGADTQAKNAEGKRPVELVPP---ESPLAQLF-LEREGASLPK 282

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NAE +  +TPL  A     L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 213 XXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+ A  G  EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 120/306 (39%), Gaps = 36/306 (11%)
Query: 3   PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHF 62
           P A   L    +  + L AA +GN + L  +   L+              D  K   LH 
Sbjct: 13  PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN--------VNCHASDGRKSTPLHL 64
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AA   +  + + LL+    DV  +D+ G  PL +A   GH E  + L +HGA        
Sbjct: 65  AAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 123 GATALHHSAGIGNIELLTYLLSKGAE---VDSESDA-------------------GTPLI 160
             T LH +A    +E+ + LLS GA+   V+    +                   G  L+
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 161 WAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA---GSLTCLDLLIQXXXXXXXX 217
            AA       VK  L        + + + T L  AVA+         +LL++        
Sbjct: 184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243
Query: 218 XX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT 276
                TPLH+AA+    ++++ L K GA  N  D  GQ  +  AA  G+ +   +L    
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303
Query: 277 SEDPSI 282
           S DPSI
Sbjct: 304 S-DPSI 308

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+ NA      TPL  A     L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 213 XXXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPLT 276
           L  L 
Sbjct: 132 LQKLN 136

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 69  TDVCKYLLEELKLDVDTQDEDGE-TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
            D+ + LLE    +V+ Q+E+G  TPL +A +    +  + L  HGA+P +    GAT  
Sbjct: 38  VDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN---- 182
             +A  G+++LL   LSKGA+V+     G T  + AA +G+ +A+K L +  AN N    
Sbjct: 97  ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 183 -AETEDNI-----TPLLSAVAAGSLTCLDLLIQXXXXXXXX---XXXXTPLH--IAADIG 231
             E ++ +     T L+ A   G +  L +L+                  +H  +++D  
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 232 STE-IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
             E I   LL  GAD NV  E G+ P+ +A  + +   V+ L 
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 34/141 (24%)
Query: 135 NIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           +++L+  LL  GA V+ + + G  TPL  A    +++ V++LL H A+P    ++  TP 
Sbjct: 37  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 193 LSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           +                                +AA  GS +++K  L  GAD N  D  
Sbjct: 97  I--------------------------------LAAIAGSVKLLKLFLSKGADVNECDFY 124
Query: 253 GQKPIQVAAARGNREAVEILF 273
           G      AA  G  +A++ L+
Sbjct: 125 GFTAFMEAAVYGKVKALKFLY 145

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 69  TDVCKYLLEELKLDVDTQDEDGE-TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL 127
            D+ + LLE    +V+ Q+E+G  TPL +A +    +  + L  HGA+P +    GAT  
Sbjct: 18  VDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN---- 182
             +A  G+++LL   LSKGA+V+     G T  + AA +G+ +A+K L +  AN N    
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 183 -AETEDNI-----TPLLSAVAAGSLTCLDLLIQXXXXXXXX---XXXXTPLH--IAADIG 231
             E ++ +     T L+ A   G +  L +L+                  +H  +++D  
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 232 STE-IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
             E I   LL  GAD NV  E G+ P+ +A  + +   V+ L 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 34/141 (24%)
Query: 135 NIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           +++L+  LL  GA V+ + + G  TPL  A    +++ V++LL H A+P    ++  TP 
Sbjct: 17  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 193 LSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           L                                +AA  GS +++K  L  GAD N  D  
Sbjct: 77  L--------------------------------LAAIAGSVKLLKLFLSKGADVNECDFY 104
Query: 253 GQKPIQVAAARGNREAVEILF 273
           G      AA  G  +A++ L+
Sbjct: 105 GFTAFMEAAVYGKVKALKFLY 125

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G+E FK+ DY  A+  Y +A+  DP +A L SNR+ C  +L + + AL D   C  L  
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            + K   R+ A L  + ++ +A  A+ + + +DP N+E
Sbjct: 79  KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           D E    TPL +AAG+ +   V+ LL+H A+ +A+ +  + PL +A + G     +LL++
Sbjct: 39  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                        TPLH AA  G  EI K LL+ GADP   + DG  P+ +
Sbjct: 99  HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           D E    TPL +AAG+ +   V+ LL+H A+ +A+ +  + PL +A + G     +LL++
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                        TPLH AA  G  EI K LL+ GADP   + DG  P+ +
Sbjct: 97  HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           D E    TPL +AAG+ +   V+ LL+H A+ +A+ +  + PL +A + G     +LL++
Sbjct: 41  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 210 XXXXXXXXXX-XXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                        TPLH AA  G  EI K LL+ GADP   + DG  P+ +
Sbjct: 101 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  DE+G TPL+ AA  G     ++L ++GA+P +      +AL  +   G  +++  L
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           L  G +V+  + + GTPL++A      + VK+LLE  A+P  ET+     +  AVA G
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
           L+  GAN        + ++H  A  G +  L   + +   ++   + G TPL+WAA HGQ
Sbjct: 13  LYFQGAN--------SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ 64
Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX-XXXTPLHI 226
              V+ LL++ A+P    +   + L  A + G    + +L+              TPL  
Sbjct: 65  IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A      + +K LL++GADP +  + G   + +A A G R   +++
Sbjct: 125 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  DE+G TPL+ AA  G     ++L ++GA+P +      +AL  +   G  +++  L
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           L  G +V+  + + GTPL++A      + VK+LLE  A+P  ET+     +  AVA G
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
           ++ +  TPL+WAA HGQ   V+ LL++ A+P    +   + L  A + G    + +L+  
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 211 XXXXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                       TPL  A      + +K LL++GADP +  + G   + +A A G R   
Sbjct: 92  GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 151
Query: 270 EIL 272
           +++
Sbjct: 152 QVI 154

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G++A    +   A+  Y++AI  DP +  L SNRS  + + G  + A  D      L+P
Sbjct: 10  KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           DW K   R+ AAL  L +F+EA   + EG+  +  N +L
Sbjct: 70  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           ++  DE+G TPL+ AA  G     ++L ++GA+P +      +AL  +   G  +++  L
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 143 LSKGAEVDS-ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           L  G +V+  + + GTPL++A      + VK+LLE  A+P  ET+     +  AVA G
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 151 SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
           ++ +  TPL+WAA HGQ   V+ LL++ A+P    +   + L  A + G    + +L+  
Sbjct: 30  TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 211 XXXXXXXX-XXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
                       TPL  A      + +K LL++GADP +  + G   + +A A G R   
Sbjct: 90  GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQ 149
Query: 270 EIL 272
           +++
Sbjct: 150 QVI 152

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+ D  K  L +    V+  DE G TPL+ A+  G  ET ++L E GA+P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
            +    +AL  ++  G  +++  LL +  +++  + + GTPL++A      + V+ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
Query: 178 HANPNAETEDNITPLLSAVAAG 199
            A+   E +   TP+  AVA G
Sbjct: 125 GADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANP 181
           + ++H  A  G ++ L   L KG  + ++ D    TPLIWA+  G+ E V+ LLE  A+P
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
           +   ++  + L  A   G    + LL++             TPL  A      + ++ LL
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             GAD     + G  P+ +A A G R+  +++
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+ D  K  L +    V+  DE G TPL+ A+  G  ET ++L E GA+P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVD-SESDAGTPLIWAAGHGQQEAVKVLLEH 177
            +    +AL  ++  G  +++  LL +  +++  + + GTPL++A      + V+ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR 124
Query: 178 HANPNAETEDNITPLLSAVAAG 199
            A+   E +   TP+  AVA G
Sbjct: 125 GADLTTEADSGYTPMDLAVALG 146

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANP 181
           + ++H  A  G ++ L   L KG  + ++ D    TPLIWA+  G+ E V+ LLE  A+P
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQX-XXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
           +   ++  + L  A   G    + LL++             TPL  A      + ++ LL
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALL 122
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             GAD     + G  P+ +A A G R+  +++
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
           L V+   +DG +PL  AA  G  +    L +HGAN    +   A  LH +   G+ +++ 
Sbjct: 77  LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL   A+ + +  +G TPLI+A   G  E V +LL+H A+ NA      T L  AV   
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 200 SLTCLDLLI 208
            +  ++LL+
Sbjct: 197 HVFVVELLL 205

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 33/128 (25%)
Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           G  V S+ D  +PL  AA HG+ + + +LL+H AN  A   D                  
Sbjct: 78  GVNVTSQ-DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ----------------- 119
Query: 206 LLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
                            PLH+A   G  +++KCLL + A PN  D  G  P+  A + G+
Sbjct: 120 ---------------AVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164
Query: 266 REAVEILF 273
            E V +L 
Sbjct: 165 HELVALLL 172

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           + ++ FK KDY  A+  Y+QAI+ +PS+A    NRSL ++R     +AL DA     L  
Sbjct: 12  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 71
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
            + K  YR  A+   L KF  A   +   V + P +K+    ++E 
Sbjct: 72  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 88  EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
           +DG TPL +AA+ GH E  K L   GA+    S  G T LH +A  G+ E++  LL+KGA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 148 EVDSES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAET 185
           +V++ S D  TP   A  +G  E VK+L    A+ NA +
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 32/119 (26%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D  TPL  AA +G  E VK LL   A+ NA ++D                          
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG------------------------- 42
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                   TPLH+AA  G  EI+K LL  GAD N   +DG  P  +A   G+ E V++L
Sbjct: 43  -------NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           + ++ FK KDY  A+  Y+QAI+ +PS+A    NRSL ++R     +AL DA     L  
Sbjct: 19  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE 444
            + K  YR  A+   L KF  A   +   V + P +K+    ++E
Sbjct: 79  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L  + A+ NA      TPL  A   G L  +++L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 213 -XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                     TPLH+AA     EI++ LLK GAD N  D+ G+    ++   GN +  EI
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 272 LFPL 275
           L  L
Sbjct: 132 LQKL 135

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 15  VQQFLNAACTGNL--DLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVC 72
           +Q++L  AC  +   +L+++           L   V +I D+N   ALH++       V 
Sbjct: 68  LQEWLRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVV 127
Query: 73  KYLLEELKLDVDTQDEDGETPLLHAA-----RQGHTETAKYLFEHGANPTIPSNLGATAL 127
           + LL+     VD Q+  G +P++  A      Q   ET   LF  G      S  G TAL
Sbjct: 128 QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL 187
Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET- 185
             +   G ++++  LL+  A+V+ + D G T L+ A  HG +E   +LL   A P+ +  
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL---AVPSCDIS 244
Query: 186 ---EDNITPLLSAVAAG 199
               D  T L+ A+ AG
Sbjct: 245 LTDRDGSTALMVALDAG 261

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 123 GATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN 180
           G TALH+S    N  ++  LL  G  +VD ++ AG +P++  A                 
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL---------------- 154
Query: 181 PNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL 240
              +T+D+I  +L     G++                    T L +A   G  +++K LL
Sbjct: 155 ATLKTQDDIETVLQLFRLGNIN-----------AKASQAGQTALMLAVSHGRVDVVKALL 203
Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM------ 294
              AD NV D+DG   +  A   G++E   +L  + S D S+     DG    M      
Sbjct: 204 ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR--DGSTALMVALDAG 261
Query: 295 QSESGKQLEETRNLK 309
           QSE    L    N+K
Sbjct: 262 QSEIASMLYSRMNIK 276

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A+ +D   R  LH A       V + LL     +++ +  DG TPL+ AAR       + 
Sbjct: 77  ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
           L    A+     N G TALH +A + N E +  LL   A  D++ D   TPL  AA  G 
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS 196
Query: 168 QEAVKVLLEHHAN 180
            EA K LL++ AN
Sbjct: 197 YEASKALLDNFAN 209

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 137 ELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
           ++++ LL++GAE+++  D    T L  AA   + +A K LL+  A+ N++     TPL +
Sbjct: 31  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 195 AVAAGSLTCLDLLIQXXXXXXXXXXX--XTPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           AVAA ++    +L++              TPL +AA +    +++ L+ A AD N  D  
Sbjct: 91  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 150
Query: 253 GQKPIQVAAARGNREAVEILF 273
           G+  +  AAA  N EAV IL 
Sbjct: 151 GKTALHWAAAVNNTEAVNILL 171

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   LL ++
Sbjct: 19  DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 79  ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 198
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 199 MHHDIVRLL 207

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 202 MHHDIVRLL 210

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 324 PEVRPEIXXXXXXXXXR--GDEAFKQKDYLMAVDAYTQAIDFD--PSD-ATLLSNRSLCW 378
           PE RP           R  G+E FK  DY  A+ AYTQA+  D  P D A L  NR+ C 
Sbjct: 16  PEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH 75
Query: 379 IRLGQAEHALADAKACRALRPDWP--KACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
           ++L   ++  A+ +A +A+  D    KA YR   AL  L + D+A       V+L+P+NK
Sbjct: 76  LKL--EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
Query: 437 ELVFAFR 443
               A R
Sbjct: 134 VFQEALR 140

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
           KL+    D++    +  AAR+G T+  + L E G +PTI +  G TALH +   G ++  
Sbjct: 10  KLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 140 TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            YL S G EV S      P+  A    + + V  L+E         E  +          
Sbjct: 70  KYLASVG-EVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLN--------- 119
Query: 200 SLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGS--TEIIKCLLKAGADPNVTDEDGQKPI 257
              C +  +             T LH    +G    E IK L++ GA P   D+  + P+
Sbjct: 120 --ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPL 177
Query: 258 QVAAARGNREAVEI 271
             A    NREA+++
Sbjct: 178 XRAXEFRNREALDL 191

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 234 MHHDIVRLL 242

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A+I+D   R  LH A       V + L+     D+D +  DG TPL+ AAR       + 
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD-AGTPLIWAAGHGQ 167
           L    A+     +LG +ALH +A + N++    LL  GA  D +++   TPL  AA  G 
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 168 QEAVKVLLEHHAN 180
            E  KVLL+H AN
Sbjct: 203 YETAKVLLDHFAN 215

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  G T L  AA    ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 54  DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 234 MHHDIVRLL 242

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A+I+D   R  LH A       V + L+     D+D +  DG TPL+ AAR       + 
Sbjct: 84  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 143
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-GTPLIWAAGHGQ 167
           L    A+     +LG +ALH +A + N++    LL  GA  D +++   TPL  AA  G 
Sbjct: 144 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 203
Query: 168 QEAVKVLLEHHAN 180
            E  KVLL+H AN
Sbjct: 204 YETAKVLLDHFAN 216

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 3/189 (1%)
Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL-SK 145
           D  GET L  AAR   ++ AK L E  A+  I  N+G T LH +       +   L+ ++
Sbjct: 55  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 146 GAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL-LSAVAAGSLTC 203
             ++D+   D  TPLI AA    +  ++ L+  HA+ NA  +   + L  +A        
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 204 LDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + LL              TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R
Sbjct: 175 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 234
Query: 264 GNREAVEIL 272
            + + V +L
Sbjct: 235 MHHDIVRLL 243

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 58  GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT 117
           GAL  AA +  T   K +L++    VD  D +G TPL  A      E AK L + GA+  
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 118 IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGHGQQEAVKVLL 175
           + +++  +   ++   G  E+L Y+L       ++ +   G  LI AA  G  + VK+LL
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 176 EH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTE 234
           E    + + + +   T L+ AV    L   + L Q                        +
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVG---LREGNQLYQ------------------------D 159
Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           I+K L++ GAD ++ D  G+  +  A  +G  E  +IL
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 33/190 (17%)
Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           + +D    TPL+ A   G       L E+          G+TAL  +     + +   LL
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 144 SKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           SKG+ V+++  +G TPL+W+   G  E    LLEH AN N    +  TPL+         
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI--------- 139
Query: 203 CLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
                                  +A+  G +EI+K LL+ GAD +  D  G      A  
Sbjct: 140 -----------------------VASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176
Query: 263 RGNREAVEIL 272
            G +E ++I 
Sbjct: 177 FGRQEVIKIF 186

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 34  AKQLDDQGKGLSKTVADIKDANK---RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDG 90
           AK L ++G  +    A  KD+ K   R ALH+AA+     + KYL+ E   + D QDEDG
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 91  ETPLLHAARQGHTETAKYLFEHGA 114
           +TP+  AA++G  E   YL + GA
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGA 337

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 32/200 (16%)
Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           DV+  D D  TPL  A          YL + GA+PTI +    +ALH +A   +     Y
Sbjct: 158 DVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVY 217
Query: 142 LLS----KGAEVDSESDAGTPLIWAA---GHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
            L+    KG   + + +  T L   A   G  Q  + K+L+E  A  + +          
Sbjct: 218 XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDG--------- 268
Query: 195 AVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLL-KAGADPNVTDEDG 253
                                      T LH AA + +  I+K L+ + G++ +  DEDG
Sbjct: 269 ---------------AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 254 QKPIQVAAARGNREAVEILF 273
           + PI +AA  G  E V  L 
Sbjct: 314 KTPIXLAAQEGRIEVVXYLI 333

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
           G+E  K +++  AV  Y +AI+ +P++A    NR+  + +LG    A+ D +    + P 
Sbjct: 19  GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
           + KA  R G AL  L K  EA   + + + LDP+N+
Sbjct: 79  YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
           G+ A  +K+Y  A+D YTQA+   P++   LSNR+  +   GQ E A  DA+    + P 
Sbjct: 18  GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGV 429
           + KA  R G A   +  +  A  A+ +G+
Sbjct: 78  YSKAWSRLGLARFDMADYKGAKEAYEKGI 106

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 32/119 (26%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           D G  L+ AA  GQ + V++L+ + A+ NA+ +D  TPL                     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPL--------------------- 39
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                      H+AA  G  EI++ LLKAGAD N  D+ G+    ++   GN +  EIL
Sbjct: 40  -----------HLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
           + QD  G +P+  AAR G  +T K L EHGA+  +P   GA  +H +   G+  ++++L 
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
           ++      ++   TPL  A   G Q+ V +L  H   P
Sbjct: 128 AESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQX 210
           E  AG  L  AA  G  + V+ LL     +P+A      T L   +   +   L+LL Q 
Sbjct: 5   EVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQG 64
Query: 211 XXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
                      +P+H AA  G  + +K L++ GAD NV D  G  PI +A   G+   V 
Sbjct: 65  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 124
Query: 271 IL 272
            L
Sbjct: 125 FL 126

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           RG+  F  K++  A+  Y  AI+ DP++    SN S C+I  G  E  +        ++P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90
Query: 400 DWPKACYREGAALRLLEKFDEAA--------NAFYEGVTLDP 433
           D  KA  R  +A   L  F +A         N  ++G +++P
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           RG+  F  K++  A+  Y  AI+ DP++    SN S C+I  G  E  +        ++P
Sbjct: 27  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 86
Query: 400 DWPKACYREGAALRLLEKFDEAA--------NAFYEGVTLDP 433
           D  KA  R  +A   L  F +A         N  ++G +++P
Sbjct: 87  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 128

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 67  GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126
           G T +   LL++     + QD  G +P+  AAR G  +T K L EHGA+  +P   GA  
Sbjct: 46  GSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH 177
           +H +   G+  ++++L ++      ++   TPL  A   G Q+ V +L  H
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 155 AGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
           AG  L  AA  G  + V+ LL     +P+A      T L   +   +   L+LL Q    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                   +P+H AA  G  + +K L++ GAD NV D  G  PI +A   G+   V  L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR G+ D  + L+        T D  G +PL  AA+ GH  T + L   G +    + +
Sbjct: 9   AARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
             T LH +A  G+  ++  LL  GA+V+++     T L WA  H  QE V++L+++ A+ 
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 182 NAETE 186
           + +++
Sbjct: 127 HTQSK 131

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED--NITPLLSAVAAGSLTCLDLLIQXX 211
           D G  L+ AA  GQ + V++L+   AN    T D    +PL  A   G  +  ++L++  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 212 XXXXXXXXX-XTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
                      TPLH+AA  G   I++ LLK GAD N  D      +  A    ++E VE
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 271 ILF 273
           +L 
Sbjct: 118 LLI 120

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
           G+  +KQ DY  A++ Y +A++ DP++A+   N    + + G  + A+   +    L P+
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
             KA YR G A      + +A   + + + LDP N
Sbjct: 76  NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           D+D +  DG TPL+ AAR       + L    A+     +LG +ALH +A + N++    
Sbjct: 7   DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 142 LLSKGAEVDSESDA-GTPLIWAAGHGQQEAVKVLLEHHAN 180
           LL  GA  D +++   TPL  AA  G  E  KVLL+H AN
Sbjct: 67  LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 32/120 (26%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+  A+ ++           GS            
Sbjct: 4   SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN-----------GS------------ 40
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  E++K LL+AGAD N  D+ G+    ++   GN +  EIL
Sbjct: 41  ---------TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G+ D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGQLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
            +H A N    ++ G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           D  D +     H A   G  +V K L +  LK D++     G T L  A  +   E +++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
           L E+GA+  I        LH +A +G+++L+  L  L K A    +    TPL  A   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
             +A  +L+E +        N  A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
           LH A  E +    + LL      +  +D+DG  PL  +      E   +L     N  + 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 119 --PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKV 173
             P + G T  H +  +GN+E++  L  +  + D     +   T L  A G    E  + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADI 230
           L+E+ A+   + + N  PL  A + GSL  ++LL  +             TPL H  A+ 
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
                +  + K GA+ ++ D  G K   VA
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           D  D +     H A   G  +V K L +  LK D++     G T L  A  +   E +++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
           L E+GA+  I        LH +A +G+++L+  L  L K A    +    TPL  A   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
             +A  +L+E +        N  A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
           LH A  E +    + LL      +  +D+DG  PL  +      E   +L     N  + 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 119 --PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKV 173
             P + G T  H +  +GN+E++  L  +  + D     +   T L  A G    E  + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADI 230
           L+E+ A+   + + N  PL  A + GSL  ++LL  +             TPL H  A+ 
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
                +  + K GA+ ++ D  G K   VA
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEE-LKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           D  D +     H A   G  +V K L +  LK D++     G T L  A  +   E +++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYL--LSKGAEVDSESDAGTPLIWAAGHG 166
           L E+GA+  I        LH +A +G+++L+  L  L K A    +    TPL  A   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 167 QQEAVKVLLEHHA-------NPNAETED 187
             +A  +L+E +        N  A+ ED
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAED 213

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 9/210 (4%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI- 118
           LH A  E +    + LL      +  +D+DG  PL  +      E   +L     N  + 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 119 --PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE---SDAGTPLIWAAGHGQQEAVKV 173
             P + G T  H +  +GN+E++  L  +  + D     +   T L  A G    E  + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL--IQXXXXXXXXXXXXTPL-HIAADI 230
           L+E+ A+   + + N  PL  A + GSL  ++LL  +             TPL H  A+ 
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
                +  + K GA+ ++ D  G K   VA
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           ++ EG+ D+ + ++ E+  D    +++G T L +A   GHTE  K+L + G N     + 
Sbjct: 44  SSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
           G T LH +A   N+++  +L+  GA V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           ++ EG+ D+ + ++ E+  D    +++G T L +A   GHTE  K+L + G N     + 
Sbjct: 44  SSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEV 149
           G T LH +A   N+++  +L+  GA V
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 10/214 (4%)
Query: 60  LHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP 116
           LH A  +G       L+   +    ++D  +   +TPL  A         + L   GA+P
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGA--EVDSES---DAGTPLIWAAGHGQQEAV 171
                 G TA H +    +   L  LL   A   +D E+   D  T L  A     QE V
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132
Query: 172 KVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXX-XTPLHIAAD 229
           ++LLE  A+ +A + +   +PL+ AV   SL+ + LL+Q             + LH A+ 
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192
Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
            G   +++ L+++GAD ++ +     P+ VA +R
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +DN TPL+ A AA SL   + L+Q              PLH A  +G T +    LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
           D    D +G+ P+ +A    N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR G+ D  + L+     DV  +D++G TPL  AAR GH E  K L E GA+       
Sbjct: 31  AARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 123 GATALHHSAGIGNIELLTYL 142
           G TA   S   GN +L   L
Sbjct: 90  GKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 32/120 (26%)
Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXX 212
           SD G  L+ AA  GQ + V++L+ + A+  A+ ++                         
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG------------------------ 57
Query: 213 XXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                    TPLH+AA  G  E++K LL+AGAD    D+ G+    ++   GN +  EIL
Sbjct: 58  --------STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGNAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
            +H A N    ++ G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +DN TPL+ A AA SL   + L+Q              PLH A  +G T +    LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
           D    D +G+ P+ +A    N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 186 EDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX-XXXXTPLHIAADIGSTEIIKCLLKAGA 244
           +DN TPL+ A AA SL   + L+Q              PLH A  +G T +    LK GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 245 DPNVTDEDGQKPIQVAAARGNREAVEIL 272
           D    D +G+ P+ +A    N + V +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
           G+  +KQ DY  A++ Y +A++ DP++A    N    + + G  + A+   +    L P+
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
             +A Y  G A      +DEA   + + + LDP N E
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           G+++ +   ++KG +V+   + G  PL +AA  GQ E ++ LL   A+ NA  + +ITPL
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 193 LSAVAAGSLTCLDLLIQ 209
           LSAV  G ++C+ LL+ 
Sbjct: 78  LSAVYEGHVSCVKLLLS 94

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
            +H A N    ++ G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
           G+++ +   ++KG +V+   + G  PL +AA  GQ E ++ LL   A+ NA  + +ITPL
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 193 LSAVAAGSLTCLDLLI 208
           LSAV  G ++C+ LL+
Sbjct: 73  LSAVYEGHVSCVKLLL 88

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
            +H A N    ++ G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D+KD      +H AAR G  D  + LLE  + DV+ +D +G  PL  AA++GH    ++L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEN-QADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Query: 110 FEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
            +H A N    ++ G TA   +   G  E+++ + + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 33/136 (24%)
Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
           G T LH ++  G+I  + YLL  G++ + +  AG TPL  A  HG  + V++LL+H A  
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLK 241
           N     N +P                                LH AA  G  +I+K LL 
Sbjct: 70  NTTGYQNDSP--------------------------------LHDAAKNGHVDIVKLLLS 97
Query: 242 AGADPNVTDEDGQKPI 257
            GA  N  +  G +P+
Sbjct: 98  YGASRNAVNIFGLRPV 113

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
           T LHIA+  G    ++ LL+ G+DPNV D  G  P+  A   G+ + VE+L 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
            REG     +  L+  + D++  D+ G +PL  A R+G +   + L   GA   + +   
Sbjct: 8   CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLL 175
            T LH +A  G+ +++  LL   A++++ ++ G  PL +A   GQ +  + L+
Sbjct: 68  DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTP 223
           G   AV++ L++  N   + +D+  +PL  A   G    +++LI +            TP
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           LH+AA  G  +I++ LL+  AD N  +E G  P+  A   G  +  E L
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G+  F  + Y  A   Y +AI  +P  A   +NR+LC++++ Q E ALAD +    L  
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
              KA +  G     +E +DEA        +L  E +
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCL 204
           G+ +  E   G  L  AA  G  + V+ LL     +P+A      T L   +       L
Sbjct: 1   GSMLLEEVCVGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVAL 60
Query: 205 DLLIQXXXXXXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           +LL Q            +P+H AA  G  + +K L++ GAD N  D  G  PI +A   G
Sbjct: 61  ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 265 NREAVEILFP 274
           +   V  L P
Sbjct: 121 HSSVVSFLAP 130

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 64  AREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
            REG     +  L+  + D++  D+ G +PL  A R+G +   + L   GA   + +   
Sbjct: 13  CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
            T LH +A  G+ +++  LL   A++++ ++ G  PL +A   GQ +  + L+ + A
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 166 GQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLI-QXXXXXXXXXXXXTP 223
           G   AV++ L++  N   + +D+  +PL  A   G    +++LI +            TP
Sbjct: 16  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           LH+AA  G  +I++ LL+  AD N  +E G  P+  A   G  +  E L
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G+  F  + Y  A   Y +AI  +P  A   +NR+LC++++ Q E ALAD +    L  
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74
Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
              KA +  G     +E +DEA        +L  E +
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 155 AGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXX 213
            G  L  AA  G  + V+ LL     +P+A      T L   +       L+LL Q    
Sbjct: 8   VGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASP 67
Query: 214 XXXXXXXXTPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
                   +P+H AA  G  + +K L++ GAD N  D  G  PI +A   G+   V  L 
Sbjct: 68  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 274 P 274
           P
Sbjct: 128 P 128

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
           +   SDAG  L  AA  GQ E V+ LLE  A+PNA       P+   +   +     LL+
Sbjct: 8   LGGSSDAG--LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLL 65
Query: 209 QXXXXXXXXXXXXT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                        T P+H AA  G  + +  L +AGA  +V D  G+ P+ +A  +G+R+
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD 125
Query: 268 AVEILFPLTSE 278
               L   T +
Sbjct: 126 IARYLHAATGD 136

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           LH AA+ G     +  L+  ++ V+  D+ G T L  A   GH +  + LF     P I 
Sbjct: 77  LHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ---PNIE 132
Query: 120 SN----LGATALHHSAGIGNIELLTYLLSKGAEVD 150
            N    LG TALH +A  G  +++  LL+KGA  D
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX 218
           L  AA  G+ E V+ LLE  ANPNA       P+   +   +     LL+          
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 219 XXXT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
              T P+H AA  G  + +  L +AGA  +V D  G+ P+ +A   G+R+    L
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR+        LLE+   DVD  DE+G T LL  A  G  +  + L E GA+       
Sbjct: 51  AARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 123 GA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
           G  TALH +AG    E++  L+  GA+++ E + G
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 143

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           +NL  T LH +      E+   LL  G + +     G TPL  A   G   +V VL +  
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 179 ANPN------AETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXXX--XXXTPLHIAADI 230
             P+      A   +  T L  A   G L  ++LL+               T LH+A D+
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
            + +++  LLK GAD N     G  P Q+   R +    + L  LT E+
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
           AAR+        LLE+   DVD  DE+G T LL  A  G  +  + L E GA+       
Sbjct: 52  AARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
Query: 123 GA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAG 156
           G  TALH +AG    E++  L+  GA+++ E + G
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 144

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           +NL  T LH +      E+   LL  G + +     G TPL  A   G   +V VL +  
Sbjct: 39  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 179 ANPN------AETEDNITPLLSAVAAGSLTCLDLLIQXXXXXXXX--XXXXTPLHIAADI 230
             P+      A   +  T L  A   G L  ++LL+               T LH+A D+
Sbjct: 99  TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED 279
            + +++  LLK GAD N     G  P Q+   R +    + L  LT E+
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
           G+  +KQ DY  A++ Y +A++ DP  A    N    + + G  + A+   +    L P 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF 440
             +A Y  G A      +DEA   + + + LDP + E  +
Sbjct: 68  SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G++ F+ K Y  A+  Y  A++    D    SN S C++ +G  +  +  +     L+P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70
Query: 400 DWPKACYREGAALRLLEKFDEA 421
           D+ K   R  +A   L KF +A
Sbjct: 71  DYSKVLLRRASANEGLGKFADA 92

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%)
Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
           G+  +KQ DY  A++ Y +A++  P++A    N    + + G  + A+   +    L P+
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
             +A Y  G A      +DEA   + + + L P N E
Sbjct: 76  NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-72
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-70
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-70
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-68
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-62
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-51
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-68
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-55
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-54
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-68
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-53
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-52
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-67
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-59
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-56
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-49
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-59
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-56
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-64
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-54
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-47
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-62
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-59
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-53
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-61
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-61
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-52
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-51
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-48
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-60
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-54
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-44
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-42
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-60
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-58
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-59
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-55
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-55
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-46
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-58
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-51
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-50
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-44
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-57
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-54
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-57
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-51
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-47
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-56
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-47
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-53
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-51
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-52
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-44
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-51
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-50
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-13
2rfa_A	232	Transient receptor potential cation channel subfa	7e-50
2rfa_A	232	Transient receptor potential cation channel subfa	5e-33
2rfa_A	232	Transient receptor potential cation channel subfa	5e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-49
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-43
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-49
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-44
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-49
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-47
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-37
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-49
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-47
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-41
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-47
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-47
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-47
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-39
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-39
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-45
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-43
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-44
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-43
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-32
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-43
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-41
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-43
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-43
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-30
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-38
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-39
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-39
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-37
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-39
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-38
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-34
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-37
2etb_A	256	Transient receptor potential cation channel subfam	6e-37
2etb_A	256	Transient receptor potential cation channel subfam	4e-28
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-37
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-36
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-32
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-36
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-36
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-34
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-34
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-24
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-33
2pnn_A	273	Transient receptor potential cation channel subfa	4e-30
2pnn_A	273	Transient receptor potential cation channel subfa	8e-17
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-32
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-31
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-31
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-31
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-10
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-30
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-24
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-23
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-20
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-19
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	5e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  233 bits (597), Expect = 3e-72
 Identities = 84/266 (31%), Positives = 121/266 (45%), Gaps = 16/266 (6%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G +     +A+ L ++        A    A K G   LH A      D+ K LL  
Sbjct: 153 AAKYGKVR----VAELLLERD-------AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                 +   +G TPL  AA+Q   E A+ L ++G +    S  G T LH +A  G+ E+
Sbjct: 202 -GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  LLSK A  +  + +G TPL   A  G      VL++H    +A T    TPL  A  
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
            G++  +  L+Q  A+ N     G +PLH AA  G T+I+  LLK GA PN    DG  P
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380

Query: 257 IQVAAARGNREAVEILFPLTSEDPSI 282
           + +A   G     ++L  +T E   +
Sbjct: 381 LAIAKRLGYISVTDVLKVVTDETSFV 406

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  228 bits (585), Expect = 2e-70
 Identities = 95/256 (37%), Positives = 134/256 (52%), Gaps = 16/256 (6%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A+  G+L     I K L  +G       A    +N +    LH AAR G T+V KYLL+ 
Sbjct: 21  ASFMGHLP----IVKNLLQRG-------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 69

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
            K  V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E 
Sbjct: 70  -KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 128

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV 
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 188

Query: 198 AGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
             +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248

Query: 257 IQVAAARGNREAVEIL 272
           + +AA  G+ E V +L
Sbjct: 249 LHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  227 bits (582), Expect = 6e-70
 Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 16/256 (6%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+++        L ++        A      K+G   LH AA+ GK  V + LLE 
Sbjct: 120 AAREGHVE----TVLALLEKE-------ASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                +   ++G TPL  A    + +  K L   G +P  P+  G T LH +A    +E+
Sbjct: 169 -DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
              LL  G   ++ES  G TPL  AA  G  E V +LL   AN N   +  +TPL     
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
            G +   D+LI+ G   +     G TPLH+A+  G+ +++K LL+  AD N   + G  P
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 347

Query: 257 IQVAAARGNREAVEIL 272
           +  AA +G+ + V +L
Sbjct: 348 LHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  223 bits (570), Expect = 3e-68
 Identities = 74/228 (32%), Positives = 105/228 (46%), Gaps = 5/228 (2%)

Query: 49  ADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
                   +    LH A+  G   + K LL+      +  +   ETPL  AAR GHTE A
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
           KYL ++ A     +    T LH +A IG+  ++  LL   A  +  + AG TPL  AA  
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPL 224
           G  E V  LLE  A+    T+   TPL  A   G +   +LL++  A+ N     G TPL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 183

Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           H+A    + +I+K LL  G  P+    +G  P+ +AA +   E    L
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  208 bits (533), Expect = 1e-62
 Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 19/247 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A    NLD    I K L  +G                G   LH AA++ + +V + LL+ 
Sbjct: 186 AVHHNNLD----IVKLLLPRG-------GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                + +   G TPL  AA++GH E    L    AN  + +  G T LH  A  G++ +
Sbjct: 235 -GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 293

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
              L+  G  VD+ +  G TPL  A+ +G  + VK LL+H A+ NA+T+   +PL  A  
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL---LKAGADPNVTDEDG 253
            G    + LL++ GA+ N V + G TPL IA  +G   +   L       +   V+D+  
Sbjct: 354 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413

Query: 254 QKPIQVA 260
               +  
Sbjct: 414 MSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  177 bits (452), Expect = 4e-51
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 28/234 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA    ++    +A+ L   G             + +G   LH AA+EG  ++   LL +
Sbjct: 219 AAKQNQVE----VARSLLQYG-------GSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
            + + +  ++ G TPL   A++GH   A  L +HG      + +G T LH ++  GNI+L
Sbjct: 268 -QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 326

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           + +LL   A+V++++  G +PL  AA  G  + V +LL++ A+PN  + D  TPL  A  
Sbjct: 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386

Query: 198 AGSLTCLDLLIQAGANANIV----AGGATPLHIAADIGSTEIIKCLLKAGADPN 247
            G ++  D+L       + V        +                +L    D  
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV---------DEILDVSEDEG 431

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  160 bits (407), Expect = 1e-44
 Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170
            G +       G T LH ++ +G++ ++  LL +GA  +  +    TPL  AA  G  E 
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAAD 229
            K LL++ A  NA+ +D+ TPL  A   G    + LL++  AN N+    G TPLHIAA 
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G  E +  LL+  A      + G  P+ VAA  G     E+L
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 2e-28
 Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 25/170 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
            A  G++     +A  L   G         +    + G   LH A+  G   + K+LL+ 
Sbjct: 285 VAQEGHVP----VADVLIKHG-------VMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN--- 135
            + DV+ + + G +PL  AA+QGHT+    L ++GA+P   S+ G T L  +  +G    
Sbjct: 334 -QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 392

Query: 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAET 185
            ++L  +  + + V                   E V  +L+   +   E 
Sbjct: 393 TDVLKVVTDETSFVLVSDKHR--------MSFPETVDEILDVSEDEGEEL 434

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  218 bits (558), Expect = 2e-68
 Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 1/226 (0%)

Query: 44  LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103
           L          +    +H AA  G     + L+ +    V+    D  +PL  A   GH 
Sbjct: 47  LLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHL 105

Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAA 163
              K L +HGA     +    T L ++   G+ + +  LL  GA V  ESD  +P+  AA
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165

Query: 164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP 223
             G  E V  L+ +  N + +     TPL  A       C+  L+++GA+ N   G  +P
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225

Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
           LH      S E+   L+  GAD    + +G++P+++         +
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  183 bits (467), Expect = 6e-55
 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 18/255 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANK-RGALHFAAREGKTDVCKYLLEEL 79
            +   +       +  L  +G       + +   +  +G +  +   G  D     L  L
Sbjct: 2   GSSHHHHH----HSSGLVPRG-------SHMASMDGKQGGMDGSKPAGPRDFPGIRL--L 48

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
              +        +P+  AA  GH  + + L   G    I +    + LH +   G++  +
Sbjct: 49  SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCV 108

Query: 140 TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198
             LL  GA+V+  +    TPL  A   G  + V +LL+H A+   E++   +P+  A   
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARR 167

Query: 199 GSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPI 257
           G + C++ LI  G N +       TPL++A +      +K LL++GAD N   +    P+
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPL 226

Query: 258 QVAAARGNREAVEIL 272
                  + E   +L
Sbjct: 227 HAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  181 bits (462), Expect = 4e-54
 Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 19/233 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+        + L  QG         +          LH A   G     K LL+ 
Sbjct: 66  AAIHGHQL----SLRNLISQG-------WAVNIITADHVSPLHEACLGGHLSCVKILLKH 114

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
               V+    D  TPL +A   G  +    L +HGA+    S+  A+ +H +A  G++E 
Sbjct: 115 -GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVEC 172

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  L++ G  +D +     TPL  A  + Q+  VK LLE  A+ N   +   +PL + V 
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVR 231

Query: 198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVT 249
             S     LL+  GA+     A G  P+ +         +  L + GA     
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPKP 283

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  213 bits (544), Expect = 7e-67
 Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
            ++  NKR  LH AA  G  D+C  L++    ++DT  ED  TPL+ AA   H E  KYL
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQ 167
            + GA        G+T LH +A  G+ E++ YLLS G  +V+ + D G TP+IWA  +  
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
            + VK+LL   ++ N    +    L  A  +G +   ++L+ A  + + V   G +PLHI
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183

Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           AA     + +   L   +D  + +++G+ P+Q A+      +   +
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  192 bits (491), Expect = 6e-59
 Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 17/230 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G++D    I   L   G       A+I   ++     L  AA     +  KYL++ 
Sbjct: 18  AAEAGHVD----ICHMLVQAG-------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIE 137
               VD +D +G T L  AA++GH E  +YL  +G  +     + G T +  +    +++
Sbjct: 67  -GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
           L+  LLSKG++++   +     L WAA  G  +  ++LL    + +A      +PL  A 
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185

Query: 197 AAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGAD 245
                 C+ L +   ++  +    G TPL  A+          + KA  D
Sbjct: 186 RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  184 bits (470), Expect = 7e-56
 Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 3/194 (1%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           +   + ++  +PL  AA  GH +    L + GAN    S    T L  +A   ++E + Y
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA-NPNAETEDNITPLLSAVAAG 199
           L+  GA VD +   G T L  AA  G  E V+ LL +   + N + +   TP++ A    
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 200 SLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
            +  + LL+  G++ NI        LH AA  G  +I + LL A  D +  +  G  P+ 
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182

Query: 259 VAAARGNREAVEIL 272
           +AA     + V + 
Sbjct: 183 IAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  167 bits (425), Expect = 3e-49
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA   +L+      K L   G       A +   +  G   LH AA++G  +V +YLL  
Sbjct: 51  AAENNHLE----AVKYLIKAG-------ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN 99

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
            ++DV+ QD+ G TP++ A    H +  K L   G++  I  N     LH +A  G +++
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
              LL+   ++ + +  G +PL  AA   + + V + L   ++   + ++  TPL  A  
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 198 AGSLTCLDLLIQAGANA 214
              +     + +A  ++
Sbjct: 220 NSQVWSALQMSKALQDS 236

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 93.2 bits (233), Expect = 6e-22
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
           H N   E ++  +PL +A  AG +    +L+QAGAN +       TPL  AA+    E +
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           K L+KAGA  +  D +G   + +AA +G+ E V+ L
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  212 bits (543), Expect = 1e-66
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 6/228 (2%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
              D      +  A + G  + C+ L+E    DV   D++  T L  AA     +  KY 
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 110 FEHGANP-TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
              GA    +  +L +T LH +   G++ ++  L+  GA+       G + +  AA  G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAG-SLTCLDLLIQAGANANIV--AGGATPL 224
              V  L+    + +   ++ +TPL+ A     S+    LL+    + N+       T L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181

Query: 225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           H A   G+T +I  LL+AGA+ +  +  G+  + +A  R N   +  L
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  193 bits (492), Expect = 4e-59
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 19/237 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A   G  +      ++L + G        D++  +K     LH+AA   + D+ KY + +
Sbjct: 16  ATQYGIYE----RCRELVEAG-------YDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 79  LKLDVDTQDED-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               VD    D   TPL  A RQGH      L ++GA+P++    G + +H +A  G+  
Sbjct: 65  -GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS 123

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHG-QQEAVKVLLEHHANPNAETEDN-ITPLLS 194
           ++ YL++KG +VD     G TPL+WAA      +  ++LL  + + N   + +  T L  
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

Query: 195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
           AV AG+ T + LL++AGAN +     G + L +A    +  +I  L +A       +
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  185 bits (473), Expect = 3e-56
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 5/195 (2%)

Query: 83  VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYL 142
           +   D+     ++ A + G  E  + L E G +   P     T LH +A    I+L+ Y 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 143 LSKGAEVDSE-SDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
           +SKGA VD    D   TPL WA   G    V  L+++ A+P+    +  + +  A   G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 201 LTCLDLLIQAGANANIV-AGGATPLHIAADIG-STEIIKCLLKAGADPNVTDE-DGQKPI 257
            + +  LI  G + +++   G TPL  AA    S +  + LL      N+ D+      +
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181

Query: 258 QVAAARGNREAVEIL 272
             A   GN   + +L
Sbjct: 182 HWAVLAGNTTVISLL 196

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  206 bits (527), Expect = 3e-64
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 10/234 (4%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTET 105
           A   D +    LH A  +G       L+   +    ++D  +   +TPL  A        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-----TPLI 160
            + L   GA+P      G TA H +    +   L  LL   A    + +A      T L 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 161 WAAGHGQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-A 218
            A     QE V++LLE  A+ +A + +   +PL+ AV   SL+ + LL+Q GAN N    
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G++ LH A+  G   +++ L+++GAD ++ +     P+ VA +R   + +   
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  179 bits (458), Expect = 4e-54
 Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 17/233 (7%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A   GNL  + ++       G        ++   N      LH A       V + L+  
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGG-------RELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIG 134
                   D  G+T    A         + L +  A    +    +  G TALH +    
Sbjct: 69  -GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127

Query: 135 NIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL 192
             E +  LL +GA++D+       +PLI A  +     V++LL+H AN NA+     + L
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 187

Query: 193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA 244
            SA   G L  +  L+++GA++++      TPL +A      +I++      A
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  161 bits (411), Expect = 4e-47
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 18/200 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE- 77
           A  T        + + L   G       A     ++ G  A H A         + LL+ 
Sbjct: 53  AVITTLPS----VVRLLVTAG-------ASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101

Query: 78  --ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP-SNLGATALHHSAGIG 134
                LD++ ++ DG T L  A      ET + L E GA+        G + L H+    
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161

Query: 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
           ++ ++  LL  GA V+++  +G + L  A+G G    V+ L+   A+ + +   N TPL+
Sbjct: 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221

Query: 194 SAVAAGSLTCLDLLIQAGAN 213
            A +   +  L       A+
Sbjct: 222 VARSRRVIDILRGKATRPAS 241

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  202 bits (516), Expect = 4e-62
 Identities = 68/276 (24%), Positives = 119/276 (43%), Gaps = 33/276 (11%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG---ALHFAAREGKTDVCKY 74
            + A    ++D    + +QL + G       A++    + G    LH A +  + D+ + 
Sbjct: 9   LIKAVQNEDVD----LVQQLLEGG-------ANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           LL     D   + ++G TP L AA  G  +  K     GA+       G TA   +A  G
Sbjct: 58  LLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 135 NIELLTYLLSKGAEVDSESDAG-----------TPLIWAAGHGQQEAVKVLLEHH-ANPN 182
            ++ L +L  +GA V+                 T L+ AA  G  E +K+LL+   A+ N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 183 AETEDNITPLLSAVAAGSLTCLD----LLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           A        L+ A+ +   + ++    LL+  GA+ N+    G TPL +A +     +++
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 238 CLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            LL +   + N TD DG+  + +A     ++  E+L
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  195 bits (498), Expect = 2e-59
 Identities = 70/239 (29%), Positives = 108/239 (45%), Gaps = 21/239 (8%)

Query: 54  ANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDED-GETPLLHAARQGHTETAKYLF 110
           A       L  A +    D+ + LLE    +V+ Q+E+ G TPL +A +    +  + L 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169
            HGA+P +    GAT    +A  G+++LL   LSKGA+V+     G T  + AA +G+ +
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 170 AVKVLLEHHANPNAETEDNI----------TPLLSAVAAGSLTCLDLLI-QAGANANIV- 217
           A+K L +  AN N   +             T L+ A   G +  L +L+ + GA+ N   
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 218 AGGATPLHIAADIGST----EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             G   L  A           I   LL  GAD NV  E G+ P+ +A  + +   V+ L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  179 bits (458), Expect = 2e-53
 Identities = 70/250 (28%), Positives = 99/250 (39%), Gaps = 32/250 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEE 78
           A      D    I + L   G       AD   +  N       AA  G   + K  L +
Sbjct: 46  AVQMSRED----IVELLLRHG-------ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN----------PTIPSNLGATALH 128
              DV+  D  G T  + AA  G  +  K+L++ GAN                 GATAL 
Sbjct: 95  -GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153

Query: 129 HSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQ----EAVKVLLEHHANPN 182
            +A  G++E+L  LL + GA+V++  + G   LI A              +LL+H A+ N
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 183 AETEDNITPLLSAVAAGSL-TCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLL 240
              E   TPL+ AV    L     LL Q     N     G T L +A ++   +I + L 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 241 KAGADPNVTD 250
           K GA  +  D
Sbjct: 274 KRGASTDCGD 283

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  199 bits (509), Expect = 2e-61
 Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 50  DIKDANKRGALHFAAREGKT-------------DVCKYLLEELKLDVDTQDEDGETPLLH 96
           +++  +    L  A+  G                V    + +     +  D  GET L  
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 97  AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDA 155
           AAR   ++ AK L E  A+  I  N+G T LH +       +   L+   A ++D+    
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 156 G-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
           G TPLI AA    +  ++ L+  HA+ NA  +   + L  A A  ++    +L++ GAN 
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           ++      TPL +AA  GS E  K LL   A+ ++TD   + P  +A  R + + V +L
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  180 bits (460), Expect = 4e-54
 Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 4/203 (1%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           + +  D     ALH AAR  ++D  K LLE    D + QD  G TPL  A         +
Sbjct: 49  LHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQ 107

Query: 108 YLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
            L  + A +     + G T L  +A +    +L  L++  A+V++  D G + L WAA  
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPL 224
              +A  VLL++ AN + +     TPL  A   GS     +L+   AN +I       P 
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227

Query: 225 HIAADIGSTEIIKCLLKAGADPN 247
            IA +    +I++ L       +
Sbjct: 228 DIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  149 bits (380), Expect = 1e-42
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 26/197 (13%)

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
           +DV+ +  DG TPL+ A+  G                     G    +         +++
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGG--------------------GLETGNSEEEEDAPAVIS 40

Query: 141 YLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198
             + +GA + +++D    T L  AA + + +A K LLE  A+ N +     TPL +AV+A
Sbjct: 41  DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100

Query: 199 GSLTCLDLLIQAGANANIVAG---GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK 255
            +     +LI+  A  ++ A    G TPL +AA +    +++ L+ + AD N  D+ G+ 
Sbjct: 101 DAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159

Query: 256 PIQVAAARGNREAVEIL 272
            +  AAA  N +A  +L
Sbjct: 160 ALHWAAAVNNVDAAVVL 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  202 bits (515), Expect = 5e-61
 Identities = 52/294 (17%), Positives = 89/294 (30%), Gaps = 53/294 (18%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE-- 78
           A   G +D     AK L   G             + +  +H A    KTD+   L+E   
Sbjct: 60  ACKFGCVD----TAKYLASVG-------EVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108

Query: 79  ------------------LKLDVDTQDEDGETPLLHAARQG--HTETAKYLFEHGANPTI 118
                              ++    +   G+T L      G  + E  K L + GA+PT 
Sbjct: 109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 119 PSNLGATALHHSAGIGNIELLTYLL-----SKGAEVDSESDAG-TPLIWAAGHGQQEAVK 172
                 T L  +    N E L  ++          +D  +  G + L WA     ++   
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-------------- 218
             +E   + N E  ++  PL  +V A  +     L+Q      I A              
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV 288

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                +  AAD    E+++ L +   +   +   G         +       + 
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  179 bits (457), Expect = 2e-52
 Identities = 54/263 (20%), Positives = 91/263 (34%), Gaps = 37/263 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G  D      ++L + G             N+ G  ALH A + G  D  KYL   
Sbjct: 27  AARKGQTD----EVRRLIETG-------VSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
                      G+ P+  A     T+    L E           G             E+
Sbjct: 76  ---GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREV 126

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAA--GHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
                        +   G T L W    G    E +K+L++  A+P A+ + + TPL+ A
Sbjct: 127 N------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

Query: 196 VAAGSLTCLDLLI-----QAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVT 249
           +   +   LDL++     ++    +     G + LH A  I   ++    ++ G D N+ 
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240

Query: 250 DEDGQKPIQVAAARGNREAVEIL 272
           D +   P+ ++         + L
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  176 bits (449), Expect = 3e-51
 Identities = 46/243 (18%), Positives = 85/243 (34%), Gaps = 24/243 (9%)

Query: 40  QGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97
            G        +   ++      +H AAR+G+TD  + L+E   +    Q+  G T L  A
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLA 60

Query: 98  ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGT 157
            + G  +TAKYL   G   ++    G   +H +      +L+  L+    E         
Sbjct: 61  CKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQ-----M 113

Query: 158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG--SLTCLDLLIQAGANAN 215
           P        ++E  +         + +     T L   V  G   L  + +L+Q GA+  
Sbjct: 114 PESLLNECDEREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLL-----KAGADPNVTDEDGQKPIQVAAARGNREAV 269
                  TPL  A +  + E +  ++     K+    +  ++ G   +  A      +  
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227

Query: 270 EIL 272
              
Sbjct: 228 MRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  168 bits (429), Expect = 2e-48
 Identities = 32/247 (12%), Positives = 62/247 (25%), Gaps = 35/247 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
               G   L  ++ K L   G       A     +K     L  A      +    +++ 
Sbjct: 145 CVGLGPEYL--EMIKILVQLG-------ASPTAKDKADETPLMRAMEFRNREALDLMMDT 195

Query: 79  LKL----DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           +       +D  ++ G + L  A      + A    E G +  +  N     L+ S    
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA 255

Query: 135 NIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
            + L   LL K      ++                       +      +    +  + +
Sbjct: 256 MVLLTKELLQKTDVFLIQACP-------------------YHNGTTVLPDRVVWLDFVPA 296

Query: 195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
           A        L LL +           GA          +  + +  L   A         
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 254 QKPIQVA 260
            +   V+
Sbjct: 357 ARSSAVS 363

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  196 bits (502), Expect = 6e-60
 Identities = 42/243 (17%), Positives = 81/243 (33%), Gaps = 20/243 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A    N+     +   L + G       A          LH AA    T + K LL    
Sbjct: 38  AIADNNVR----LVCTLLNAG-------ALKNLLENEFPLHQAATLEDTKIVKILLFS-G 85

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG-ATALHHSAGIGNIELL 139
           LD    D+ G T L +A   G+ +T K   +           G  T+ +H+  + ++ ++
Sbjct: 86  LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV 145

Query: 140 TYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL-SAVAA 198
           +Y LS+       +   + +     +G  + + +LL++  + N        P +  A+  
Sbjct: 146 SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205

Query: 199 GSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
             +  L  L +   N        +       +   EI K +++   +           I 
Sbjct: 206 KDIEMLQALFKYDINIY------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

Query: 259 VAA 261
              
Sbjct: 260 KNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  181 bits (463), Expect = 3e-54
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 49  ADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
            D    D +   A ++A  +    +   LL            + E PL  AA    T+  
Sbjct: 22  KDTFKADVHGHSASYYAIADNNVRLVCTLLNA---GALKNLLENEFPLHQAATLEDTKIV 78

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAG 164
           K L   G + +   + G TAL+++   GN++ +   + K   +      G  T    A  
Sbjct: 79  KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATP 223
                 V   L    +   +    ++ +   +  G +  + LL+    + N        P
Sbjct: 139 LNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197

Query: 224 -LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            + +A D    E+++ L K   +    + +            + E  +++
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIYSANLE-------NVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  156 bits (397), Expect = 1e-44
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 5/180 (2%)

Query: 95  LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD 154
           L       ++  K       +       G +A +++    N+ L+  LL+ GA  +   +
Sbjct: 4   LSRINTWKSKQLKSF-LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LLE 61

Query: 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
              PL  AA     + VK+LL    + +   +   T L  AV +G++  + L ++     
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 215 NIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                 G  T  + A  +    I+   L                I +    G+ + + +L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  149 bits (379), Expect = 5e-42
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 26/231 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA   +      I K L   G        D    + +G  AL++A   G     K  +++
Sbjct: 69  AATLEDTK----IVKILLFSG-------LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 79  LKLDVDTQDEDG-ETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               +    + G +T   HA          Y      +      +  + +H +   G+++
Sbjct: 118 -NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVD 175

Query: 138 LLTYLLSKGAEVDSESDAG-TPLI-WAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           ++  LL      ++ +     P I  A  +   E ++ L ++  N         +  L  
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLEN 228

Query: 196 VAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGAD 245
           V         ++I+        +      +     +         L+    
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  196 bits (500), Expect = 9e-60
 Identities = 58/269 (21%), Positives = 91/269 (33%), Gaps = 24/269 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A    +          L            D+++   + ALH AA  G+    + L     
Sbjct: 16  AVIHQHEP----FLDFLLGFSA--GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-G 68

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI--------------PSNLGATA 126
             V   +  G T L  A R      A  L +   +                 P    A A
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 127 LHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET 185
              S      E          ++++E+  G TPL  A  H   E V++L +  A+ N   
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 186 EDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAG 243
                TPL  AV A + + L+LL++AGA+      GG TPL  A    +  + + L   G
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A       D   P   + +  + +  +  
Sbjct: 249 APEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  192 bits (491), Expect = 2e-58
 Identities = 61/244 (25%), Positives = 90/244 (36%), Gaps = 19/244 (7%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEE--LKLDVDTQDEDGETPLLHAARQGHTET 105
           V      +   ALH A          +LL        +D Q++ G+T L  AA  G   T
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--------- 156
            + L+  GA   +    G TALH +  +        LL        ++            
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 157 ------TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
                    + +  + + E      +      AE  D  TPL  AV       + LL  A
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 211 GANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA 268
           GA+ N      G TPLH+A +  +  +++ LLKAGADP      G+ P+  A  R N   
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240

Query: 269 VEIL 272
             +L
Sbjct: 241 ARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  156 bits (398), Expect = 9e-45
 Identities = 49/239 (20%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE- 77
           AA  G         ++L   G       A +  A + G  ALH A R         LL+ 
Sbjct: 52  AAILGEAS----TVEKLYAAG-------AGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

Query: 78  -----------ELKLDVDTQDEDGETPLLHAARQ-GHTETAKYLFEHGANPTIPSNLGAT 125
                       L    D   +    P    ++     E      +        +  G T
Sbjct: 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

Query: 126 ALHHSAGIGNIELLTYLLSKGAEVDS-ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
            LH +    + E++  L   GA+++  E   G TPL  A        +++LL+  A+P A
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 184 ETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLK 241
                 TPL SA+   +     LL   GA      G   +P   +     ++      +
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (287), Expect = 5e-29
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 31  KKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDE 88
            +   + +D           ++  N  G   LH A      ++ + L +    D++  + 
Sbjct: 138 NEEEPRDEDWR-------LQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEP 189

Query: 89  D-GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
             G TPL  A         + L + GA+PT     G T L  +    N  L   L + GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 148 EVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
               +     +P   +      +      E+
Sbjct: 250 PEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 7e-21
 Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 15/129 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANK-RGALHFAAREGKTDVCKYLLE 77
           A    + +    + + L D G       AD+   +    R  LH A       V + LL+
Sbjct: 165 AVIHKDAE----MVRLLRDAG-------ADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               D   +   G TPL  A  + +   A+ L  HGA          +    S    + +
Sbjct: 214 A-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272

Query: 138 LLTYLLSKG 146
                    
Sbjct: 273 NRDEGDEYD 281

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  194 bits (495), Expect = 8e-59
 Identities = 72/258 (27%), Positives = 107/258 (41%), Gaps = 20/258 (7%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYL 75
           FL A  +G+ +       +L ++G       ADI  AN  G  ALH A  +   D+ K+L
Sbjct: 44  FLAACSSGDTE----EVLRLLERG-------ADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           +E    +++  D +G  PL  AA  G+ + A+YL   GA+    ++ G T L  +     
Sbjct: 93  VEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
            ELL   +++        D             ++A + L   H N     +   T L  A
Sbjct: 152 EELLQNEVNRQGV-----DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206

Query: 196 VAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
            A G    L LLIQA  + NI    G TPLH AA  G  E  + L++   D    ++ GQ
Sbjct: 207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266

Query: 255 KPIQVAAARGNREAVEIL 272
               VA         E+ 
Sbjct: 267 TAFDVADEDILGYLEELQ 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  185 bits (473), Expect = 2e-55
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 10/225 (4%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
            + DA ++         G     +  + + +     + +DG    L A   G TE    L
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVK-RKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
            E GA+    +  G TALH +    N++++ +L+  GA ++   + G  PL  AA  G  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIVAGGATPLHIA 227
           +  + L+   A+  A   +  TPL  A        L   + + G +              
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE------AARKEE 173

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             I   +  + L     +     + G   + VAAA+G  E +++L
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  185 bits (472), Expect = 2e-55
 Identities = 69/246 (28%), Positives = 103/246 (41%), Gaps = 19/246 (7%)

Query: 31  KKIAKQLDDQGKGLSKTVADIKDANKRG-ALHFAAREGKTDVCKYLLEELKLDVDTQDED 89
           +   +    +           K     G     A   G T+    LLE    D++  + D
Sbjct: 21  ETDLEPPVVKR-------KKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVD 72

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           G T L  A    + +  K+L E+GAN   P N G   LH +A  G +++  YL+S+GA V
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 150 DSESDAG-TPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLL 207
            + +  G TPL  A     +E ++  +     +  A  ++    +L             L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ-------WL 185

Query: 208 IQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
                N    A  G T LH+AA  G TE++K L++A  D N+ D DG  P+  AA  G  
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 267 EAVEIL 272
           EA  IL
Sbjct: 246 EACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  161 bits (410), Expect = 3e-46
 Identities = 52/238 (21%), Positives = 86/238 (36%), Gaps = 24/238 (10%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLE 77
            A    N+D    + K L + G       A+I   D      LH AA  G  D+ +YL+ 
Sbjct: 79  QACIDDNVD----MVKFLVENG-------ANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLF-EHGANPTIPSNLGATALHHSAGIGNI 136
           +    V   + +G+TPL  A  +   E  +      G +          A      I   
Sbjct: 128 Q-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEEERIMLR 179

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           +   +L S        + +G T L  AA  G  E +K+L++   + N +  D  TPL +A
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 196 VAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
              G      +L++   +   V   G T   +A +     + +   K     +   E 
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.5 bits (236), Expect = 7e-22
 Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 13/141 (9%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
                     +L+   + L+           +     K G  ALH AA +G T+V K L+
Sbjct: 170 RKEEER---IMLRDARQWLNSGH-------INDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           +  + DV+ +D DG TPL  AA  G  E  + L E+  +    + +G TA   +      
Sbjct: 220 QA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

Query: 137 ELLTYLLSKGAEVDSESDAGT 157
            L      +      + +  +
Sbjct: 279 YLEELQKKQNLLHSEKREKKS 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  193 bits (493), Expect = 6e-58
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 29/258 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA    +     I + L   G       AD+   +K G   LH A   G  +V + LL+ 
Sbjct: 65  AAGYNRVR----IVQLLLQHG-------ADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
               V+  D    TPL  AA +   E    L  HGA+PT+ +  G +A+  +      E 
Sbjct: 114 -GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER 172

Query: 139 LTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA 198
           LTY     +           L+ AA       VK  L        + + + T L  AVA+
Sbjct: 173 LTYEFKGHS-----------LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221

Query: 199 GSLTCLD---LLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
                     LL++ GAN N       TPLH+AA+    ++++ L K GA  N  D  GQ
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ 281

Query: 255 KPIQVAAARGNREAVEIL 272
             +  AA  G+ +   +L
Sbjct: 282 TALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  175 bits (447), Expect = 4e-51
 Identities = 56/247 (22%), Positives = 83/247 (33%), Gaps = 24/247 (9%)

Query: 32  KIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED 89
           K A  L D         A        K+  L  AAR G  +    LL  L ++    D  
Sbjct: 5   KSALDLADPS-------AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR 57

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
             TPL  AA        + L +HGA+       G   LH++   G+ E+   LL  GA V
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117

Query: 150 DSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
           ++      TPL  AA   + E   +LL H A+P        + +  A        L    
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177

Query: 209 QAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG---N 265
                      G + L  A +      +K  L          +  +  +  A A      
Sbjct: 178 ----------KGHSLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR 226

Query: 266 REAVEIL 272
           ++  E+L
Sbjct: 227 KQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  173 bits (442), Expect = 2e-50
 Identities = 60/274 (21%), Positives = 97/274 (35%), Gaps = 47/274 (17%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
           NA   G+ +    + + L   G       A +   +      LH AA + + +VC  LL 
Sbjct: 97  NACSYGHYE----VTELLLKHG-------ACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145

Query: 78  ELKLDVDTQDEDGETPL---------------------LHAARQGHTETAKYLFEHGANP 116
               D    +  G++ +                     L AAR+      K         
Sbjct: 146 H-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204

Query: 117 TIPSNLGATALHHSAGIG---NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVK 172
                   TALH +         ++   LL KGA V+ ++    TPL  AA     + ++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIG 231
           VL +H A  NA      T L  A  AG L    LL+  G++ +I+   G T   +     
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN--- 321

Query: 232 STEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
             E ++ +L        +D D    +  A+  G+
Sbjct: 322 --EAVQQILSESTPMRTSDVDY--RLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  157 bits (400), Expect = 2e-44
 Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 3/173 (1%)

Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNI-ELLTYLLSKGAEVDSESDAG-TPLIW 161
           ++A  L +  A   +        L  +A  GN  +L+  L        +      TPL  
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-G 220
           AAG+ +   V++LL+H A+ +A+ +  + PL +A + G     +LL++ GA  N +    
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

Query: 221 ATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF 273
            TPLH AA     E+   LL  GADP + +  G+  + +A     RE +   F
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (327), Expect = 5e-34
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 23/186 (12%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAAREG---KTDVCKY 74
           L AA   +L  +KK           L+  + +  +  +   ALH A       +  V + 
Sbjct: 183 LQAAREADLAKVKKT----------LALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG 134
           LL +   +V+ +++D  TPL  AA + H +  + L +HGA      +LG TALH +A  G
Sbjct: 233 LLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291

Query: 135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
           +++    LLS G++    S  G T           EAV+ +L           D    LL
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRT--SDVDYRLL 344

Query: 194 SAVAAG 199
            A  AG
Sbjct: 345 EASKAG 350

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  187 bits (478), Expect = 3e-57
 Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 67  GKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA 126
               V    + +     +  D  GET L  AAR   ++ AK L E  A+  I  N+G T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 127 LHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE 184
           LH +       +   L+   A ++D+    G TPLI AA    +  ++ L+  HA+ NA 
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAG 243
            +   + L  A A  ++    +L++ GAN ++      TPL +AA  GS E  K LL   
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A+ ++TD   + P  +A  R + + V +L
Sbjct: 182 ANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  179 bits (457), Expect = 4e-54
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 4/203 (1%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           + +  D     ALH AAR  ++D  K LLE    D + QD  G TPL  A         +
Sbjct: 17  LHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 108 YLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGH 165
            L  + A +     + G T L  +A +    +L  L++  A+V++  D G + L WAA  
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPL 224
              +A  VLL++ AN + +     TPL  A   GS     +L+   AN +I       P 
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195

Query: 225 HIAADIGSTEIIKCLLKAGADPN 247
            IA +    +I++ L +     +
Sbjct: 196 DIAQERMHHDIVRLLDEYNLVRS 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  191 bits (488), Expect = 6e-57
 Identities = 62/279 (22%), Positives = 112/279 (40%), Gaps = 36/279 (12%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAAREGKTDVCKYLLE 77
           L+    G+      I + +  +         +I    + R  LH+ A     +  + L+ 
Sbjct: 98  LHTEAAGSYA----ITEPITRES-------VNIIDPRHNRTVLHWIASNSSAEKSEDLIV 146

Query: 78  ELKL-------DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
                      DV+  D D  TPL+ A          YL + GA+PTI +    +ALH +
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

Query: 131 AGIGNIELLTYLLSK---GAEVDSESDAG-TPLIWAAGHGQQEAV---KVLLEHHANPN- 182
           A   +  ++ Y+L+      +++     G T L+  A +  ++ V   K+L+E  A  + 
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266

Query: 183 -------AETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGST 233
                  +E     T L  A    ++  +  L+ + G+N +     G TP+ +AA  G  
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326

Query: 234 EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           E++  L++ GA     D       Q+A A  +   V+I 
Sbjct: 327 EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  178 bits (453), Expect = 8e-52
 Identities = 52/248 (20%), Positives = 86/248 (34%), Gaps = 31/248 (12%)

Query: 21  AACTGNLD----LLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKY 74
            A   + +    L+   AK+    G       AD+   +      L  A    +  +  Y
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAG-------ADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 75  LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH---GANPTIPSNLGATALHHSA 131
           L++    D    ++   + L  AA         Y+        +       G TAL   A
Sbjct: 185 LMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243

Query: 132 GIGNIELLT---YLLSKGAEVDSESDAG---------TPLIWAAGHGQQEAVKVLLEHH- 178
                + +     L+ KGA+VD +  A          T L +AA       VK L+    
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           +N + + ED  TP++ A   G +  +  LIQ GA+   V A   T   +A       I+ 
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 363

Query: 238 CLLKAGAD 245
              +   +
Sbjct: 364 IFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  177 bits (452), Expect = 1e-51
 Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 27/255 (10%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
            G  K   +                G   +  +    L+      + +     LH    G
Sbjct: 47  DGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQ-IPTEPEPESPIK-LHTEAAG 104

Query: 102 HTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE--------LLTYLLSKGAEVDSES 153
                + +     N   P +   T LH  A   + E             ++ GA+V++  
Sbjct: 105 SYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD 163

Query: 154 DAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ--- 209
               TPL+ A    ++  V  L++  A+P    +   + L  A A      +  ++    
Sbjct: 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223

Query: 210 AGANANIV-AGGATPLHIAADIGSTE---IIKCLLKAGADPNVT--------DEDGQKPI 257
              +   +   G T L I A     +     K L++ GA  +             G+  +
Sbjct: 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

Query: 258 QVAAARGNREAVEIL 272
             AA   N   V+ L
Sbjct: 284 HYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  166 bits (422), Expect = 2e-47
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 14/234 (5%)

Query: 51  IKDANKRGALHFAAREGKTDVCKYLLE-ELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           +++  K    H +    +  + +   +  +K   +        P       G+     + 
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQE 169
             +   PT P       LH  A  G+  +   +  +   +       T L W A +   E
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAE 139

Query: 170 AVKVLLEHH--------ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGG 220
             + L+ H         A+ NA   D  TPL+ AV A     +  L++AGA+  I     
Sbjct: 140 KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSE 199

Query: 221 ATPLHIAADIGSTEIIKCLL---KAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
            + LH AA      ++  +L   K   D    D +G   + + A    R+ V  
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  113 bits (286), Expect = 3e-28
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 21  AACTGNLDLLKKIAKQLDDQG---KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE 77
            A     D +   AK L ++G           D +    R ALH+AA+     + KYL+ 
Sbjct: 242 VAHNEGRDQVA-SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
           E   + D QDEDG+TP++ AA++G  E   YL + GA+         TA   +    +  
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360

Query: 138 LLTYLLSKGAEVD 150
           ++        E +
Sbjct: 361 IVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 12/130 (9%)

Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
                  S + +   L+ A+  G  +  +  L+H++           P       G+   
Sbjct: 26  KNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL---------YPNPQGYGNGNDFL 76

Query: 204 LDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
            D                   LH  A  GS  I + + +   +        +  +   A+
Sbjct: 77  GDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIAS 134

Query: 263 RGNREAVEIL 272
             + E  E L
Sbjct: 135 NSSAEKSEDL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  186 bits (474), Expect = 1e-56
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 12/223 (5%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH A  E +    + LL      +  +D+DG  PL  +      E   +L     N  +
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 119 PS---NLGATALHHSAGIGNIELLTYLLSK--GAEVDSESDAG-TPLIWAAGHGQQEAVK 172
                + G T  H +  +GN+E++  L  +    +++  ++ G T L  A G    E  +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA-NIV-AGGATPLHIAADI 230
            L+E+ A+   + + N  PL  A + GSL  ++LL   G +A N     G TPL  A   
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

Query: 231 GSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           G  +    L+ K GA+ ++ D  G K   VA    N +  +  
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  160 bits (408), Expect = 6e-47
 Identities = 55/192 (28%), Positives = 78/192 (40%), Gaps = 9/192 (4%)

Query: 90  GETPLLHAARQGHT-ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
              PL  A  +    +  + L    +        G   LH S      E+ ++LLSK   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 149 V---DSESDAG-TPLIWAAGHGQQEAVKVLLEHH--ANPNAETEDNITPLLSAVAAGSLT 202
           V   D   D+G TP   A   G  E VK L +     + N  T   +T L  AV      
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 203 CLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVA 260
               LI+ GA+  I       PLH AA +GS ++I+ L   G +  N  D+ G  P+  A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 261 AARGNREAVEIL 272
            A G+ +A  +L
Sbjct: 182 LAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  141 bits (358), Expect = 1e-39
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE-EL 79
           +      +    I   L  + + ++    D  D +     H A   G  +V K L +  L
Sbjct: 43  SVSFQAHE----ITSFLLSKMENVNL--DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELL 139
           K D++     G T L  A  +   E +++L E+GA+  I        LH +A +G+++L+
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 140 TYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAV 196
             L   G + V+ +   G TPL  A   G  +A  +L+E + A  +            A+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  138 bits (350), Expect = 2e-38
 Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 122 LGATALHHSAGIGNIELLT-YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           +    LH +        +   L SK + +  +   G  PL W+      E    LL    
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 180 NPNAE---TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG---GATPLHIAADIGST 233
           N N +    +   TP   A + G+L  +  L       ++      G T LH+A      
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 234 EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           E+ + L++ GA   + D+  Q P+  AA+ G+ + +E+L
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.3 bits (163), Expect = 9e-13
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 15/94 (15%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L     + + L           + +   +K+G   L  A  EG  D    L+E+
Sbjct: 147 AASVGSLK----LIELL------CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
              + D  D  G      A    + +  K+   +
Sbjct: 197 YGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  178 bits (453), Expect = 2e-53
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 52  KDANKRGALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTETAKY 108
              +    LH A    +  +   ++ ++K     ++ Q+   +TPL  A      E A+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-------DAGTPLIW 161
           L   G +P +    G T LH +   G +  +  L          S       +  T L  
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 162 AAGHGQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVA-G 219
           A+ HG    V++L+   A+ NA+   N  T L  AV   +   + LL++ GA+ N V   
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
           G +P  +     ST I + L +   +      + +            E  E
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  172 bits (438), Expect = 3e-51
 Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 13/200 (6%)

Query: 86  QDEDGETPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
             EDG++ L  A             + +    A     +NL  T LH +      E+   
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP------NAETEDNITPLLS 194
           LL  G + +     G TPL  A   G   +V VL +    P       A   +  T L  
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 195 AVAAGSLTCLDLLIQAGANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDED 252
           A   G L  ++LL+  GA+ N      G T LH+A D+ + +++  LLK GAD N     
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 253 GQKPIQVAAARGNREAVEIL 272
           G  P Q+   R +    + L
Sbjct: 184 GYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  132 bits (334), Expect = 4e-36
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE- 77
           A  T   +    IA+ L   G        D +  + RG   LH A  +G       L + 
Sbjct: 52  AVITNQPE----IAEALLGAG-------CDPELRDFRGNTPLHLACEQGCLASVGVLTQS 100

Query: 78  ----ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL-GATALHHSAG 132
                L   +   + +G T L  A+  G+    + L   GA+        G TALH +  
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160

Query: 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
           + N +L++ LL  GA+V+  +  G +P     G       + L +          ++   
Sbjct: 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220

Query: 192 LLSAVAAGSL 201
                 +   
Sbjct: 221 ESYDTESEFT 230

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 183 AETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIK 237
             TED  + L  A+        +  +  +    A  N       TPLH+A      EI +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            LL AG DP + D  G  P+ +A  +G   +V +L
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  172 bits (439), Expect = 4e-52
 Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 33/199 (16%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+ D  K  L +    V+  DE G TPL+ A+  G  ET ++L E GA+P I
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            +    +AL  ++  G  +++  LL +  +++     G TPL++A      + V+ LL  
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            A+   E +                                 G TP+ +A  +G  ++ +
Sbjct: 125 GADLTTEADS--------------------------------GYTPMDLAVALGYRKVQQ 152

Query: 238 CLLKAGADPNVTDEDGQKP 256
            +         ++     P
Sbjct: 153 VIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  150 bits (382), Expect = 8e-44
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 34/185 (18%)

Query: 90  GETPLLHAARQGHTETAKYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
               +   A QG  +  K     G N    P   G T L  ++  G IE + +LL  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
               +    + L  A+  G  + V +LLE   + N    +                    
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-------------------- 101

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                       G TPL  A      + ++ LL  GAD     + G  P+ +A A G R+
Sbjct: 102 ------------GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149

Query: 268 AVEIL 272
             +++
Sbjct: 150 VQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  148 bits (376), Expect = 6e-43
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 16/175 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVAD---IKDANKRGALHFAAREGKTDVCKYLLE 77
            A  G LD      K+   +G        +     D      L +A+  G+ +  ++LLE
Sbjct: 9   LAAQGELD----QLKEHLRKG-------DNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
               D     ++ E+ L  A+  G+T+    L E   +  I    G T L ++    +++
Sbjct: 58  W-GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP 191
            +  LL++GA++ +E+D+G TP+  A   G ++  +V+  H             P
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGAD-PNVTDEDGQKPIQVAAARGNREAVEIL 272
           G +  +H  A  G  + +K  L+ G +  N  DE G  P+  A+A G  E V  L
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL 55

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  171 bits (437), Expect = 2e-51
 Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 41/230 (17%)

Query: 51  IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
           +K       L  A +     V + L +     VD  D +G TPL  A      E AK L 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQ 168
           + GA+  + +++  +   ++   G  E+L Y+L     +++  +  G   LI AA  G  
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 169 EAVKVLLEH-HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIA 227
           + VK+LLE    + + + +                                 G T L  A
Sbjct: 120 DNVKLLLEDGREDIDFQNDF--------------------------------GYTALIEA 147

Query: 228 ADI-----GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             +        +I+K L++ GAD ++ D  G+  +  A  +G  E  +IL
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  142 bits (361), Expect = 2e-40
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 21/201 (10%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
           L AA   +    KK+ + L D           + + +  G   L+ A      ++ K L+
Sbjct: 10  LEAANQRDT---KKVKEILQDTT-------YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGN 135
           +    D++ Q+   ++P L+A  QG TE   Y+ +H   +    +  G  AL  +A  G+
Sbjct: 60  DR-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 136 IELLTYLLSKG-AEVDSESDAG-TPLIWAA-----GHGQQEAVKVLLEHHANPNAETEDN 188
           I+ +  LL  G  ++D ++D G T LI A          Q+ VK+L+E+ A+ + +    
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178

Query: 189 ITPLLSAVAAGSLTCLDLLIQ 209
            T +  A   G      +L Q
Sbjct: 179 RTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  127 bits (322), Expect = 9e-35
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 20/167 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEE 78
           A    +++    IAK L D+G       ADI  +++       +A  +G+T++  Y+L+ 
Sbjct: 46  AVHNNDIE----IAKALIDRG-------ADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG-ANPTIPSNLGATALHHSAGI---- 133
              D++  +  G   L+ AA +GH +  K L E G  +    ++ G TAL  + G+    
Sbjct: 95  ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154

Query: 134 -GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
               +++  L+  GA+   + ++G T + +A   G  E  K+L +++
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  167 bits (426), Expect = 3e-50
 Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 34/195 (17%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
           ++H  A +G+       +E+ +  ++  DE+G TPL+ AA  G     ++L ++GA+P +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
                 +AL  +   G  +++  LL  G +V+     G TPL++A      + VK+LLE 
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            A+P  ET+                                 G   + +A  +G   + +
Sbjct: 125 GADPTIETDS--------------------------------GYNSMDLAVALGYRSVQQ 152

Query: 238 CLLKAGADPNVTDED 252
            +           ++
Sbjct: 153 VIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  147 bits (373), Expect = 2e-42
 Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 15/170 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
            A  G +           +Q          I   ++ G   L +AA  G+  V ++LL+ 
Sbjct: 10  LAAQGEML----YLATRIEQE-------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              D     +  E+ L  A  +G+T+  K L + G +       G T L ++    +++ 
Sbjct: 59  -GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
           +  LL  GA+   E+D+G   +  A   G +   +V+  H        ++
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.5 bits (161), Expect = 6e-13
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 219 GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
             +  +H  A  G    +   ++     N TDE+G  P+  AAA G    VE L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  123 bits (312), Expect = 5e-33
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 122 LGATALHHSAGIGNIELLT-YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           +  + L  +A   +++ L+  L  +G EV      G T L  AA +   EA  VL+E   
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 180 N-----PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI--------------VAGG 220
                   +E  +  T L  AV   ++  +  L+  GA+ +               +  G
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 221 ATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL 275
             PL  AA +GS EI++ L++ GAD    D  G   + +   + N+     ++ L
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNL 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  166 bits (422), Expect = 2e-49
 Identities = 55/223 (24%), Positives = 81/223 (36%), Gaps = 40/223 (17%)

Query: 51  IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
             D N          +       +L          +D    TPL+ A   G       L 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169
           E+          G+TAL  +     + +   LLSKG+ V+++  +G TPL+W+   G  E
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAAD 229
               LLEH AN N    +                                G TPL +A+ 
Sbjct: 116 MSYFLLEHGANVNDRNLE--------------------------------GETPLIVASK 143

Query: 230 IGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            G +EI+K LL+ GAD +  D  G      A   G +E ++I 
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  149 bits (379), Expect = 4e-43
 Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 38/208 (18%)

Query: 42  KGLSKTVADI----KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHA 97
           +       D     +D+  R  L  A   G  +    L+E     ++ +D +G T L+ A
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWA 75

Query: 98  ARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG- 156
            +      A+ L   G+N       G T L  S   G  E+  +LL  GA V+  +  G 
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPLI A+ +G+ E VK LLE  A+ +A                                 
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLT----------------------------- 166

Query: 217 VAGGATPLHIAADIGSTEIIKCLLKAGA 244
              G T    A   G  E+IK   +   
Sbjct: 167 ---GLTAEASARIFGRQEVIKIFTEVRR 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  165 bits (420), Expect = 9e-49
 Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 5/216 (2%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
             + A      ++ + +L + K      D+D  T L  A   GHTE  ++L + G     
Sbjct: 10  ICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
             + G + LH +A  G  E++  LL KGA V++ +  G TPL +AA   + E   +LLE 
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
            ANP+A+   + T +  A A G+L  + +L+   A+ NI    G TPLH+A D    E  
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           K L+  GA   + +++ + P+QVA   G    +   
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  155 bits (392), Expect = 1e-44
 Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 17/234 (7%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLL 76
            N A +G L    ++ +++           +     D + R ALH+A   G T++ ++LL
Sbjct: 11  CNLAYSGKL---DELKERILADK-------SLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           +   + V+ +D+ G +PL  AA  G  E  K L   GA+    +  G T LH++A     
Sbjct: 61  QL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           E+   LL  GA  D++     T +  AA  G  + V +LL + A+ N +  +  TPL  A
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

Query: 196 VAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNV 248
                +     L+  GA+  I      TPL +A   G   +I   L  G + ++
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  147 bits (372), Expect = 9e-42
 Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 2/187 (1%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
                   A      E  + +    +  T       TALH +   G+ E++ +LL  G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           V+ + DAG +PL  AA  G  E VK LL   A+ NA  ++  TPL  A +        +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 208 IQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
           ++ GAN +      AT +H AA  G+ +++  LL   A  N+ D +G  P+ +A      
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 267 EAVEILF 273
           E  + L 
Sbjct: 186 EEAKFLV 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  165 bits (420), Expect = 9e-49
 Identities = 38/216 (17%), Positives = 70/216 (32%), Gaps = 11/216 (5%)

Query: 54  ANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFE 111
             K G   +  A    +      L  E + D+    +  +T       +G T      + 
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA 170
                          LH +A  GN+  L   L     V+    AG T L WA   G ++ 
Sbjct: 67  AEQA-----ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 171 VKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAA 228
           V++L        N + +   T L +A   G    + LL+  GA  ++          +A 
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           +     ++K      A   +++ +     + +    
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  160 bits (408), Expect = 6e-47
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 8/190 (4%)

Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145
             + G+  +  A       T   L+    +    +++  T        G   L       
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-----IP 62

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
              V  ++++   PL  AA  G    ++  L++    N   +   T L  A   G    +
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 205 DLLI-QAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
           ++L  Q     N     G T LH AA  G  +I++ LL  GA  ++ + + +    +A  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 263 RGNREAVEIL 272
                 ++  
Sbjct: 183 AACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  135 bits (343), Expect = 2e-37
 Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEEL 79
                G   L+                     +  +    LH AA+ G     +  L+  
Sbjct: 51  KGTSKGRTGLIPSN--------------YVAEQAESIDNPLHEAAKRGNLSWLRECLDN- 95

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIEL 138
           ++ V+  D+ G T L  A   GH +  + LF          + LG TALH +A  G  ++
Sbjct: 96  RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADI 155

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA 197
           +  LL+KGA  D  +         A        +K      A       ++      +  
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

Query: 198 AGSL 201
               
Sbjct: 216 EHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (297), Expect = 5e-31
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
           P  P   G   +  +           L  +  ++   +D   T        G     +  
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTG 59

Query: 175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST 233
           L        + E    PL  A   G+L+ L   +      N +   G+T L+ A   G  
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 234 EIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           +I++ L  +   + N  ++ G   +  AA +G  + V++L
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  165 bits (421), Expect = 9e-49
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 6/186 (3%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
           +  G+  L    R    +T      HG      + L    L  S+  G  +L+  ++ + 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
            +    +D G T L  A   G  E VK L++   N NA   D  TPL  A +  ++    
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 206 LLIQAGANANIV----AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            L+++GA    +       A       + G T+  + L        + ++     +    
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180

Query: 262 ARGNRE 267
            + + E
Sbjct: 181 PQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  163 bits (414), Expect = 1e-47
 Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 10/218 (4%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
           +   + +L    R          +    + V   +      LL ++ +G  +  + +   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAV 171
             +P++P++ G TALH++   G+ E++ +L+  G  V++    G TPL  AA     +  
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119

Query: 172 KVLLEHHANPNAETEDNI---TPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIA 227
           K L+E  A   A T  ++         +  G   C   L        I+  G    L   
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY 179

Query: 228 ADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
                 E+    +K G    +   + +  I+   AR N
Sbjct: 180 EPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  147 bits (373), Expect = 1e-41
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 25/217 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
              T           +    G         +K  N      L  ++ EG+ D+ + ++ E
Sbjct: 12  GKRTNLRK----TGSERIAHG-------MRVK-FNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              D    +++G T L +A   GHTE  K+L + G N     + G T LH +A   N+++
Sbjct: 60  -VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 139 LTYLLSKGAEVDSESDAG----TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS 194
             +L+  GA V + + +              G  +  + L           +  I  L  
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178

Query: 195 AVAAGSLTCLDLLIQAGANANIVAGG---ATPLHIAA 228
                     +L ++ G    I+            A 
Sbjct: 179 YEPQND---DELPMKEGDCMTIIHREDEDEIEWWWAR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  115 bits (289), Expect = 9e-30
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 23/190 (12%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYL 75
            L+++  G  D    + +++  +         D    N  G  ALH A   G T++ K+L
Sbjct: 41  LLDSSLEGEFD----LVQRIIYEV-------DDPSLPNDEGITALHNAVCAGHTEIVKFL 89

Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAG 132
           ++   ++V+  D DG TPL  AA   + +  K+L E GA     T      A        
Sbjct: 90  VQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME 148

Query: 133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA--ETEDNI 189
            G  +   +L     ++   +      L         E   + ++           +++ 
Sbjct: 149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDE 205

Query: 190 TPLLSAVAAG 199
                A    
Sbjct: 206 IEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 90.4 bits (225), Expect = 8e-21
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 15/152 (9%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
           NA C G+ +    I K L   G        ++  A+  G   LH AA      VCK+L+E
Sbjct: 76  NAVCAGHTE----IVKFLVQFG-------VNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 78  E--LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
                  +   D            +G+T+ +++L+       I +     AL       +
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND 184

Query: 136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ 167
            EL          +  E +      WA  + +
Sbjct: 185 DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  161 bits (409), Expect = 1e-47
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSK 145
             +    +    R+G+    +   ++  N      + G + LH +   G   ++  L+ +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
           GA ++  +    TPL  AA HG ++ V+ LL++ A+ NA  E    PL  A   G     
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 205 DLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + L+  GA  +I    G  P+  A       + +   K G + N      + P +    +
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN------RIPYKDTFWK 175

Query: 264 GN 265
           G 
Sbjct: 176 GT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  160 bits (407), Expect = 2e-47
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 6/176 (3%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            +    REG     +  L+  + D++  D+ G +PL  A R+G +   + L   GA   +
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            +    T LH +A  G+ +++  LL   A++++ ++ G  PL +A   GQ +  + L+ +
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGST 233
            A  +   +    P+  A A       +   + G N N       P       G+T
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN-----RIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  132 bits (336), Expect = 4e-37
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLEE 78
               GN        +        L  T  D+   D +    LH+A REG++ V + L+  
Sbjct: 12  QCREGNAV----AVRLW------LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
               ++  +   +TPL  AA  GH +  + L ++ A+    +  G   LH++   G  ++
Sbjct: 62  -GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA 183
              L++ GA V   +  G  P+  A    ++   +   +   N N 
Sbjct: 121 AEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.6 bits (200), Expect = 6e-18
 Identities = 26/118 (22%), Positives = 40/118 (33%), Gaps = 20/118 (16%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
            AA  G+ D    I ++L           ADI   N+ G   LH+A   G+  V + L+ 
Sbjct: 78  LAASHGHRD----IVQKLLQYK-------ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
                V   ++ GE P+  A         +   + G       NL       +   G 
Sbjct: 127 N-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ------NLNRIPYKDTFWKGT 177

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  161 bits (410), Expect = 6e-47
 Identities = 46/216 (21%), Positives = 76/216 (35%), Gaps = 18/216 (8%)

Query: 53  DANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
           D           AAR+        LLE    DVD  DE+G T LL  A  G  +  + L 
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLA 97

Query: 111 EHGANPTIP-SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
           E GA+        G TALH +AG    E++  L+  GA+++ E + G T L  A    + 
Sbjct: 98  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT 157

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAA 228
                 ++       E    +  +L           +++ + G        G    ++  
Sbjct: 158 TPKGNPMQFGRRIGLE---KVINVLEGQVFEYAEVDEIVEKRGK-------GKDVEYLVR 207

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
                +         A+     +D +  ++ A A  
Sbjct: 208 WKDGGDCEWVKGVHVAEDVA--KDYEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  150 bits (380), Expect = 1e-42
 Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
                 ++G +         +  DV     + ETP   AAR+   +    L     +   
Sbjct: 18  EYLIEWKDGHSPSWVPSS-YIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDA 72

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAGHGQQEAVKVLLE 176
               G TAL   AG+G+ + +  L   GA++D        T L  AAG+ + E V+ L+E
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132

Query: 177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEII 236
             A+   E E  +T L  A      T     +Q G            +         E+ 
Sbjct: 133 LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG--LEKVINVLEGQVFEYAEVD 190

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           + + K G   +V          +   +   +   + 
Sbjct: 191 EIVEKRGKGKDV--------EYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  142 bits (360), Expect = 1e-39
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
             +G    L   + GH+ +        A+     +   T    +A   + + L+ LL + 
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL-ED 67

Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA-ETEDNITPLLSAVAAGSLTCL 204
            +VD+  + G T L++ AG G  + V++L E  A+ +  +    +T L  A        +
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 205 DLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + L++ GA+  +    G T L +A +I  T      ++ G    +        +      
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI---NVLEGQVF 184

Query: 264 GNREAVEIL 272
              E  EI+
Sbjct: 185 EYAEVDEIV 193

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  140 bits (354), Expect = 6e-39
 Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           GE   +  +R                       GA         G+           A+V
Sbjct: 1   GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYIAADV 41

Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
            SE +  TP   AA    ++A+  LL    + +A  E+  T LL     GS  C+ LL +
Sbjct: 42  VSEYE--TPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 210 AGANANI--VAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
           AGA+ +   + GG T LH+AA     E+++ L++ GAD  V DE G   +++A       
Sbjct: 99  AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158

Query: 268 AVEIL 272
                
Sbjct: 159 PKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  128 bits (323), Expect = 2e-34
 Identities = 36/183 (19%), Positives = 53/183 (28%), Gaps = 15/183 (8%)

Query: 49  ADI--KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTET 105
            D+   D N R AL F A  G     + L E    D+D +D   G T L  AA     E 
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGH 165
            + L E GA+  +    G TAL  +  I         +  G  +  E      ++     
Sbjct: 127 VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV--INVLEGQVF 184

Query: 166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLH 225
              E  +++ +                          C  +     A           L 
Sbjct: 185 EYAEVDEIVEKR--------GKGKDVEYLVRWKDGGDCEWVKGVHVAEDV-AKDYEDGLE 235

Query: 226 IAA 228
            A 
Sbjct: 236 YAV 238

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  154 bits (393), Expect = 2e-45
 Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 33/188 (17%)

Query: 86  QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145
              D    LL AAR G  +  + L  +GA+       G T LH +A  G++E++  LL  
Sbjct: 10  HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
           GA+V++   AG TPL  AA  G  E V+VLL++ A+ NA   +                 
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME----------------- 112

Query: 205 DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
                          G TPLH+AA  G  EI++ LLK GAD N  D+ G+    ++   G
Sbjct: 113 ---------------GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

Query: 265 NREAVEIL 272
           N +  EIL
Sbjct: 158 NEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  148 bits (377), Expect = 5e-43
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 34/195 (17%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
                 ++    L  AAR G+ D  + L+     DV+ +D  G TPL  AA  GH E  +
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
            L ++GA+     + G T L  +A  G++E++  LL  GA+V++    G TPL  AA  G
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

Query: 167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHI 226
             E V+VLL++ A+ NA+ +                                 G T   I
Sbjct: 125 HLEIVEVLLKNGADVNAQDKF--------------------------------GKTAFDI 152

Query: 227 AADIGSTEIIKCLLK 241
           + D G+ ++ + L K
Sbjct: 153 SIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (330), Expect = 2e-36
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 15/160 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G  D      + L   G       AD+   +  G   LH AA  G  ++ + LL+ 
Sbjct: 21  AARAGRDD----EVRILMANG-------ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              DV+  D  G TPL  AA  GH E  + L ++GA+       G T LH +A  G++E+
Sbjct: 70  -GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI 128

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
           +  LL  GA+V+++   G T    +  +G ++  ++L + 
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  150 bits (382), Expect = 4e-44
 Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 34/185 (18%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           D    LL AAR G  +  + L  +GA  T    LG + LH +A  G+      LL  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
            D+ +    TPL  AA  G    V+VLL+H A+ NA+                       
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML-------------------- 99

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE 267
                         T LH A +    E+++ L+K GAD +   +  +    ++   GN +
Sbjct: 100 ------------KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

Query: 268 AVEIL 272
             EIL
Sbjct: 148 LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  136 bits (346), Expect = 7e-39
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 35/182 (19%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AAR G+ D  + L+        T D  G +PL  AA+ GH  T + L   G +   
Sbjct: 5   KLLEAARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            + +  T LH +A  G+  ++  LL  GA+V+++     T L WA  H  QE V++L+++
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            A+ + +++                                   T   I+ D G+ ++ +
Sbjct: 123 GADVHTQSKF--------------------------------CKTAFDISIDNGNEDLAE 150

Query: 238 CL 239
            L
Sbjct: 151 IL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  120 bits (305), Expect = 7e-33
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 14/158 (8%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI-KDANKRGALHFAAREGKTDVCKYLLE 77
           L AA  G  D      + L   G       A    D      LH AA+ G     + LL 
Sbjct: 7   LEAARAGQDD----EVRILMANG-------APFTTDWLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
              +  D + +   TPL  AA +GH    + L +HGA+      L  TALH +    + E
Sbjct: 56  A-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
           ++  L+  GA+V ++S    T    +  +G ++  ++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  148 bits (377), Expect = 3e-43
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 6/162 (3%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG 146
            E     L  AA +G  E    L ++  N    +  G TAL     +GN E+   LL +G
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRG 60

Query: 147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           A  D +   G   +  AA  G  + ++ LLE  A+ N E  +   PL  A   G L  ++
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 206 LLIQAGANANIVAG---GATPLHIAADIGSTEIIKCLLKAGA 244
            L++  A +N+      G T   +A   G  E++  +   GA
Sbjct: 121 FLVKHTA-SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  134 bits (341), Expect = 5e-38
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
           +      L  +A  G++E LT LL     V++++  G T L      G  E  + LL   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRG 60

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           ANP+ +       +  A  AG L  L  L++  A+ NI    G  PLH+AA  G   +++
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 238 CLLKAGA-DPNVTDEDGQKPIQVAAARGNREAVEIL 272
            L+K  A +    +  G     +A   G  E V ++
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  118 bits (298), Expect = 9e-32
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 17/163 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L+        L            ++   N  G  AL      G  ++ + LL  
Sbjct: 12  AAARGDLE----QLTSLLQNN-------VNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              + D +D  G   +  AAR G  +T + L E  A+  I  N G   LH +A  G++ +
Sbjct: 60  -GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 139 LTYLLSKGAE-VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           + +L+   A  V   +  G T    A  +G+ E V ++  + A
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  147 bits (375), Expect = 7e-43
 Identities = 52/188 (27%), Positives = 76/188 (40%), Gaps = 35/188 (18%)

Query: 87  DEDGETPLLHAARQGHTETAKYLFE-HGANPTIPSNLGATALHHSAGIGNIELLTYLLSK 145
           + + +  LL AA+ G  ET K L      N        +T LH +AG   + ++ YLL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
           GA+V ++   G  PL  A  +G  E  ++L++H A  N                      
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------------- 107

Query: 205 DLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
                            TPLH AA  G  EI K LL+ GADP   + DG  P+      G
Sbjct: 108 ---------------KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD-LVKDG 151

Query: 265 NREAVEIL 272
           + +  ++L
Sbjct: 152 DTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  142 bits (362), Expect = 6e-41
 Identities = 50/195 (25%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 53  DANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLF 110
             N      L  AA+ G  +  K L     ++    +    TPL  AA        +YL 
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 111 EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE 169
           +HGA+       G   LH++   G+ E+   L+  GA V+       TPL  AA  G+ E
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAAD 229
             K+LL+H A+P  +  D                                G TPL +  D
Sbjct: 123 ICKLLLQHGADPTKKNRD--------------------------------GNTPLDLVKD 150

Query: 230 IGSTEIIKCLLKAGA 244
            G T+I   L    A
Sbjct: 151 -GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (313), Expect = 7e-34
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+++      K+L       +    + +D   R    LHFAA   +  V +YLL+ 
Sbjct: 15  AAKAGDVE----TVKKL------CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              DV  +D+ G  PL +A   GH E A+ L +HGA   +      T LH +A  G  E+
Sbjct: 65  -GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 139 LTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
              LL  GA+   ++  G TPL      G  +   +L    A
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (282), Expect = 2e-29
 Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCL 204
           GA  +S  +A   L+ AA  G  E VK L      N         TPL  A     ++ +
Sbjct: 1   GAMGNS--EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58

Query: 205 DLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAAR 263
           + L+Q GA+ +    GG  PLH A   G  E+ + L+K GA  NV D     P+  AAA+
Sbjct: 59  EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 118

Query: 264 GNREAVEIL 272
           G  E  ++L
Sbjct: 119 GKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYLLE 77
           NA   G+ +    +A+ L   G       A +   D  K   LH AA +GK ++CK LL+
Sbjct: 81  NACSYGHYE----VAELLVKHG-------AVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
               D   ++ DG TP L   + G T+    L    A
Sbjct: 130 H-GADPTKKNRDGNTP-LDLVKDGDTDIQDLLRGDAA 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  150 bits (380), Expect = 7e-43
 Identities = 43/206 (20%), Positives = 70/206 (33%), Gaps = 10/206 (4%)

Query: 73  KYLLEELKLDVDTQDE---DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH 129
           + +L +             +    LL AA  G  E  +   +   +P+ P+  G TALH+
Sbjct: 2   RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 130 SAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-ED 187
           +    N  ++ +L++ GA V+S    G TPL  AA          L++H A   A T  D
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 188 NITPLLSAVAA--GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA 244
             T          G   C   L     +  ++ +G    L   +     + +        
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESV 179

Query: 245 DPNVTDEDGQKPIQVAAARGNREAVE 270
                D   +     AA  G    V 
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  149 bits (379), Expect = 9e-43
 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 49  ADIKDANKRG-----ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHT 103
              + A +        L  AA  G+ +V +  ++E   D    +E+G T L +A    + 
Sbjct: 9   GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANY 67

Query: 104 ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD--SESDAGTPLIW 161
               +L   GAN   P + G T LH +A   +  +   L+  GA +   + SD  T    
Sbjct: 68  SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

Query: 162 AAGH--GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG 219
              +  G  +    L +   +        +  L    +A     L              G
Sbjct: 128 CDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDG 186

Query: 220 -GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
              T    AA  G    +      G  P V  +  +
Sbjct: 187 PEETDWWWAALHGQEGYVPRNY-FGLFPRVKPQRSK 221

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 92.3 bits (230), Expect = 1e-21
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 171 VKVLLEHHANPNAETEDNITP---LLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
           ++ +L    +P       + P   LL A   G L  +   ++   + +     G T LH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A    +  I+  L+ AGA+ N  D  G  P+  AA+  +      L
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  144 bits (365), Expect = 4e-42
 Identities = 35/114 (30%), Positives = 57/114 (50%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
           ++  E K +G++A    +   A+  Y++AI  DP +  L SNRS  + + G  + A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
                L+PDW K   R+ AAL  L +F+EA   + EG+  +  N +L    +  
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  144 bits (367), Expect = 7e-42
 Identities = 39/184 (21%), Positives = 63/184 (34%), Gaps = 35/184 (19%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G     + LL    +  D  +  G+T  L     G T  A  L + GA+P +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
               G + +H +A  G ++ L  L+  GA+V+     G  P+  A   G    V  L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 122

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
            ++ +                                     G TPL +A   G+ +++ 
Sbjct: 123 ESDLHRRDAR--------------------------------GLTPLELALQRGAQDLVD 150

Query: 238 CLLK 241
            L  
Sbjct: 151 ILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  124 bits (314), Expect = 3e-34
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
             AA  G++  ++++          L + +      N+ G  AL      G T +   LL
Sbjct: 7   SGAAARGDVQEVRRL----------LHRELVHPDALNRFGKTALQVMM-FGSTAIALELL 55

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           ++     + QD  G +P+  AAR G  +T K L EHGA+  +P   GA  +H +   G+ 
Sbjct: 56  KQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
            ++++L +  +++      G TPL  A   G Q+ V +L  H
Sbjct: 115 AVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (284), Expect = 6e-30
 Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 156 GTPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
           G  L  AA  G  + V+ LL     +P+A      T L      GS      L++ GA+ 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASP 61

Query: 215 NIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           N+    G +P+H AA  G  + +K L++ GAD NV D  G  PI +A   G+   V  L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  142 bits (360), Expect = 3e-41
 Identities = 37/115 (32%), Positives = 60/115 (52%)

Query: 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD 390
            + A E K +G+E FK+ DY  A+  Y +A+  DP +A L SNR+ C  +L + + AL D
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
              C  L   + K   R+ A L  + ++ +A  A+ + + +DP N+E     R  
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  143 bits (362), Expect = 4e-41
 Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 7/159 (4%)

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
           ++    +  E     L  AA +G  E  + L E GANP  P++ G   +     +G+  +
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSARV 59

Query: 139 LTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
              LL  GAE +    A    P+  AA  G  + + VL    A  +        P+  A 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119

Query: 197 AAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEI 235
             G       L  A         G+    I A  G ++I
Sbjct: 120 ELGHRDVARYLRAAAGGTR----GSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  136 bits (345), Expect = 1e-38
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
           A          L  AA  G+ +  + LLE    + +  +  G  P +     G    A+ 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRP-IQVMMMGSARVAEL 62

Query: 109 LFEHGANPTIPSNLGAT-ALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
           L  HGA P        T  +H +A  G ++ L  L   GA +D     G  P+  A   G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 167 QQEAVKVLLEHHANPNAETEDNITPL 192
            ++  + L              I   
Sbjct: 123 HRDVARYLRAAAGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  122 bits (310), Expect = 1e-33
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 143 LSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +   A    E  +   L  AA  G+ E V+ LLE  ANPNA       P+      GS  
Sbjct: 1   MEPAAGSSME-PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSAR 58

Query: 203 CLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA 260
             +LL+  GA  N    A    P+H AA  G  + +  L +AGA  +V D  G+ P+ +A
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118

Query: 261 AARGNREAVEIL 272
              G+R+    L
Sbjct: 119 EELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  104 bits (261), Expect = 1e-26
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 20/154 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G ++      + L + G       A+    N  G   +      G   V + LL  
Sbjct: 19  AAARGRVE----EVRALLEAG-------ANPNAPNSYGRRPIQVMMM-GSARVAELLLLH 66

Query: 79  LKLDVDTQDEDGETPLLH-AARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
              + +  D    T  +H AAR+G  +T   L   GA   +    G   +  +  +G+ +
Sbjct: 67  -GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125

Query: 138 LLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV 171
           +  YL +                  A  G  +  
Sbjct: 126 VARYLRAAAGGT----RGSNHARIDAAEGPSDIP 155

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  140 bits (355), Expect = 2e-40
 Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)

Query: 320 MKELPEVRPEI-KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCW 378
           M         +    A   K +G+E F++ DY  A+  YT+AI  +P DA L SNR+ C+
Sbjct: 1   MGHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACY 60

Query: 379 IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
            +L + + AL D + C  L P + K   R+ AAL  ++ + +A + + + + LD   KE 
Sbjct: 61  TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

Query: 439 VFAFREAVEA 448
              ++  + A
Sbjct: 121 ADGYQRCMMA 130

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  140 bits (355), Expect = 1e-39
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI 136
           E  K+       +G    L   + GH+ +        A+     +   T    +A   + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADE 57

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNA-ETEDNITPLLS 194
           + L+ LL +  +VD+  + G T L++ AG G  + V++L E  A+ +  +    +T L  
Sbjct: 58  QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116

Query: 195 AVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
           A        ++ L++ GA+  +    G T L +A +I  T      ++ G    +  
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  139 bits (352), Expect = 3e-39
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA 179
           +  GA         G+           A+V SE +  TP   AA    ++A+  LL    
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQALSQLL-EDR 67

Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI--VAGGATPLHIAADIGSTEIIK 237
           + +A  E+  T LL     GS  C+ LL +AGA+ +   + GG T LH+AA     E+++
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            L++ GAD  V DE G   +++A            
Sbjct: 128 ALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  134 bits (341), Expect = 1e-37
 Identities = 45/198 (22%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 49  ADIKDANKRGA--LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
                    GA       ++G +            DV     + ETP   AAR+   +  
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVV---SEYETPWWTAARKADEQAL 60

Query: 107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESDAGTPLIWAAG 164
             L     +       G TAL   AG+G+ + +  L   GA++D        T L  AAG
Sbjct: 61  SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPL 224
           + + E V+ L+E  A+   E E  +T L  A      T     +Q G             
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR----------- 168

Query: 225 HIAADIGSTEIIKCLLKA 242
                IG  ++I  L   
Sbjct: 169 -----IGLEKVINVLEGQ 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  138 bits (349), Expect = 7e-39
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 18/182 (9%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIP---SNLGATALHHSAGIGNIELLTYLLSK 145
                +  AA  G  E    LFE G         SN+    L ++      ++  +L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQ------EAVKVLLEHHANPNAETEDNITPLLSAVAA 198
           GA++ S +  G T        G        E  K+ LE  A+  A  +     +   +  
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 199 GSLTCLD-------LLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
             +   +       +  Q+G    I    G T L           +K +       N+ +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

Query: 251 ED 252
             
Sbjct: 185 NS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  113 bits (284), Expect = 1e-29
 Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 31/188 (16%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAA-----REGKTDVCK 73
             AA  G  +       +L ++G        + K++  +  + +        E +  +  
Sbjct: 11  SAAAMLGTYE----DFLELFEKG-------YEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 74  YLLEELKLDVDTQDEDGETPLLHAARQGH------TETAKYLFEHGANPTIPSNLGATAL 127
           +L+ +   D+ ++ ++G T      + G       TE  K   E GA+ T         +
Sbjct: 60  FLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 128 HHSAGIGNIELL-------TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
             +     ++               G ++  +   G T L +     +  A+K++ ++  
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

Query: 180 NPNAETED 187
             N +   
Sbjct: 179 KYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 4/94 (4%)

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIA----ADIGSTEIIKC 238
           +        + +A   G+      L + G         +  L+       D    +I   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 239 LLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           L+  GAD     ++G          G  +     
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  134 bits (341), Expect = 2e-38
 Identities = 34/166 (20%), Positives = 55/166 (33%), Gaps = 35/166 (21%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
            +       +  L  AA +G  ET + L E GA+P   +  G   +     +G+ ++   
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAEL 62

Query: 142 LLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
           LL  GAE +    A    P+  AA  G  + + VL    A  +                 
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW------------ 110

Query: 200 SLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD 245
                               G  P+ +A + G  +I + L  A  D
Sbjct: 111 --------------------GRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  130 bits (329), Expect = 1e-36
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 49  ADIKDANKRG--ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA 106
             I          L  AA  G+ +  + LLE    D +  +  G  P +     G  + A
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRP-IQVMMMGSAQVA 60

Query: 107 KYLFEHGANPTIPSNLGAT-ALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAG 164
           + L  HGA P        T  +H +A  G ++ L  L   GA +D     G  P+  A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 165 HGQQEAVKVLLEHHAN 180
            G ++  + L     +
Sbjct: 121 QGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  122 bits (310), Expect = 7e-34
 Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCL 204
              +     +    L  AA  GQ E V+ LLE  A+PNA       P+      GS    
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVA 60

Query: 205 DLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAA 262
           +LL+  GA  N    A    P+H AA  G  + +  L +AGA  +V D  G+ P+ +A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 263 RGNREAVEIL 272
           +G+R+    L
Sbjct: 121 QGHRDIARYL 130

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  133 bits (336), Expect = 3e-37
 Identities = 39/124 (31%), Positives = 62/124 (50%)

Query: 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
               K+A E K + ++ FK KDY  A+  Y+QAI+ +PS+A    NRSL ++R     +A
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447
           L DA     L   + K  YR  A+   L KF  A   +   V + P +K+    ++E  +
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126

Query: 448 AGRK 451
             ++
Sbjct: 127 IVKQ 130

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  135 bits (341), Expect = 6e-37
 Identities = 48/254 (18%), Positives = 80/254 (31%), Gaps = 54/254 (21%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKL-------DVDTQDEDGETPLLHAA---RQGHTETA 106
           R  L      G  +    LLE L+           T+   G+T L+ A    + G     
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 107 KYLFEHGANPTIPSNL-----------GATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
             L +   +   P  L           G +ALH +    +++ +  L+  GA+V   +  
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 156 G--------------TPLIWAAGHGQQEAVKVLLEHH---ANPNAETEDNITPLLSAVAA 198
                           PL  AA   Q + V  LLE+    A+  A      T L + V  
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 199 GSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
              +                   + L I    G  ++   L        +++  G  P++
Sbjct: 183 ADNSP----------------ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226

Query: 259 VAAARGNREAVEIL 272
           +AA  G  E    +
Sbjct: 227 LAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  111 bits (278), Expect = 4e-28
 Identities = 43/218 (19%), Positives = 63/218 (28%), Gaps = 39/218 (17%)

Query: 25  GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE----- 77
           G    +  + +   D G       A   D   +G  ALH A  +      K L+E     
Sbjct: 57  GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116

Query: 78  -------ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG---ANPTIPSNLGATAL 127
                    +    T    GE PL  AA     +   YL E+    A+     +LG T L
Sbjct: 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL 176

Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
           H    I +                 S   + L+     G  +    L             
Sbjct: 177 HALVMIAD----------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ 220

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLH 225
            +TPL  A   G +     ++Q   +      GA   H
Sbjct: 221 GLTPLKLAAKEGKIEIFRHILQREFS------GAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.1 bits (221), Expect = 3e-20
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 26/155 (16%)

Query: 21  AACTGNLD----LLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKY 74
           A    +L     L++  A  +  +  G              G   L  AA   + DV  Y
Sbjct: 97  AIEKRSLQCVKLLVENGA-DVHLRACG-RFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

Query: 75  LLE--ELKLDVDTQDEDGETPL---------------LH-AARQGHTETAKYLFEHGANP 116
           LLE       ++  D  G T L               L      G  +    L       
Sbjct: 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214

Query: 117 TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
            I ++ G T L  +A  G IE+  ++L +     +
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  130 bits (330), Expect = 8e-37
 Identities = 58/157 (36%), Positives = 79/157 (50%), Gaps = 33/157 (21%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +G TPL  AAR GH E  K L E GA+       G T LH +A  G++E++  LL  GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           V+++   G TPL  AA +G  E VK+LLE  A+ NA+ ++                    
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-------------------- 100

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA 244
                       G TPLH+AA  G  E++K LL+AGA
Sbjct: 101 ------------GRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  129 bits (327), Expect = 2e-36
 Identities = 55/122 (45%), Positives = 72/122 (59%), Gaps = 2/122 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
               G T LH +A  G++E++  LL  GA+V+++   G TPL  AA +G  E VK+LLE 
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

Query: 178 HA 179
            A
Sbjct: 124 GA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  117 bits (296), Expect = 6e-32
 Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++  TPL  A   G L  + LL++AGA+ N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 217 VA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
               G TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  104 bits (263), Expect = 3e-27
 Identities = 51/129 (39%), Positives = 68/129 (52%), Gaps = 14/129 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L+    + K L + G       AD+   +K G   LH AAR G  +V K LLE 
Sbjct: 9   AARNGHLE----VVKLLLEAG-------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              DV+ +D++G TPL  AAR GH E  K L E GA+       G T LH +A  G++E+
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

Query: 139 LTYLLSKGA 147
           +  LL  GA
Sbjct: 117 VKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 187 DNITPLLSAVAAGSLTCLDLLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGAD 245
           +  TPL  A   G L  + LL++AGA+ N     G TPLH+AA  G  E++K LL+AGAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 246 PNVTDEDGQKPIQVAAARGNREAVEIL 272
            N  D++G+ P+ +AA  G+ E V++L
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  128 bits (325), Expect = 5e-36
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 49  ADI-KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
            D   +      LH A+ +G     +YLL+    D + +D  G TPL  A   GH +  +
Sbjct: 2   IDPFTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
            L +H A          + LH +A  G+++++  LLS GA  ++ +  G  P+ +     
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 167 QQEAVKVLLEHHANPNA 183
            +  +  L E + + +A
Sbjct: 121 MKSLLL-LPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  126 bits (319), Expect = 4e-35
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 82  DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTY 141
           D  T +  GET L  A+ +G   + +YL ++G++P +  + G T LH +   G+++++  
Sbjct: 3   DPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 142 LLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
           LL   A V++      +PL  AA +G  + VK+LL + A+ NA     + P+        
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121

Query: 201 LTCLDLLIQAGAN 213
            + L L  +  ++
Sbjct: 122 KSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  121 bits (306), Expect = 3e-33
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           G +  +     T L  A+  G   +V+ LL++ ++PN +     TPL  A   G L  ++
Sbjct: 1   GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60

Query: 206 LLIQAGANANIVA-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG 264
           LL+Q  A  N       +PLH AA  G  +I+K LL  GA  N  +  G +P+       
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 265 NREAVEIL 272
            +  + + 
Sbjct: 121 MKSLLLLP 128

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  129 bits (327), Expect = 5e-36
 Identities = 31/110 (28%), Positives = 53/110 (48%)

Query: 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
                ++ + K+ G+ A  +K+Y  A+D YTQA+   P++   LSNR+  +   GQ E A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
             DA+    + P + KA  R G A   +  +  A  A+ +G+  +     
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  125 bits (315), Expect = 1e-34
 Identities = 36/122 (29%), Positives = 59/122 (48%)

Query: 324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ 383
           P    E   +A   K  G+E  K +++  AV  Y +AI+ +P++A    NR+  + +LG 
Sbjct: 2   PLGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN 61

Query: 384 AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFR 443
              A+ D +    + P + KA  R G AL  L K  EA   + + + LDP+N+      +
Sbjct: 62  YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLK 121

Query: 444 EA 445
            A
Sbjct: 122 IA 123

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  131 bits (330), Expect = 2e-34
 Identities = 42/289 (14%), Positives = 69/289 (23%), Gaps = 52/289 (17%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLL 76
             AA TG    L      L             +K        A   AA  G   V   L 
Sbjct: 97  FVAAITGCSSALD-TLCLLLTSD-------EIVKVIQAENYQAFRLAAENGHLHVLNRLC 148

Query: 77  EE-LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP--SNLGATALHHSAGI 133
           E      +     +       AA  GH      L E                A   +A  
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208

Query: 134 -GNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA--------- 183
            G+  ++ +LL     +               +G++     +  H               
Sbjct: 209 RGHHNVINFLLDCPVMLAYAEI------HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 184 -----------ETEDNITPLLSAVAAGSLTCLDLL--------IQAGANANIVAG-GATP 223
                      E       L + +       LD +        I+A A    + G     
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322

Query: 224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           L +A  +G+      LL   +   +T  +      +    G  +   + 
Sbjct: 323 LRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  101 bits (253), Expect = 7e-24
 Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
                   +++   +   L++A         K L  +       +    E     AA  G
Sbjct: 51  HIFLPGTKNMEQVRQLLCLYYAHYN---RNAKQLWSDA----HKKGIKSEVICFVAAITG 103

Query: 102 HT---ETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV---DSESDA 155
            +   +T   L        +       A   +A  G++ +L  L            +++ 
Sbjct: 104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 156 GTPLIWAAGHGQQEAVKVLLEHHANPNAET---EDNITPLLSAVAAGSLTCLDLLIQAGA 212
                 AA +G    +  L E            E+      +AV  G    ++ L+    
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 213 NANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
                           + G   +   + +         ++     +++   G  + V 
Sbjct: 224 MLAY------AEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNPDGVFDLVT 271

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 22/147 (14%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
             +++ V  +K+ +   A   +  +G  D+              +   G   L +  R+ 
Sbjct: 242 PFIARHVNRLKEMHD--AFKLSNPDGVFDLVTKS----------ECLQGFYMLRNLIRRN 289

Query: 102 HT---ETAKYLF-----EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES 153
                +  ++L      +  A            L  +  +GN      LLS  +      
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS--VLAL 347

Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHAN 180
                       G+ +   V LEHH +
Sbjct: 348 TKANNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 21/147 (14%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQG-----------KGLSKTVADIKDANKRGALHFAAREG 67
           ++    G   +   IA+ ++               G+   V   +       L    R  
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289

Query: 68  KT---DVCKYLLEELKL----DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS 120
                D  ++LL    +       T   D    L  A R G+      L    +   +  
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGA 147
                  + +   G ++L    L    
Sbjct: 350 A---NNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 14/96 (14%), Positives = 20/96 (20%), Gaps = 5/96 (5%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEEL 79
           N     +  LL    + L       +         +    L  A R G    C  LL   
Sbjct: 284 NLIRRNDEVLLD-DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI- 341

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
                                G  +      EH  +
Sbjct: 342 ---PSVLALTKANNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 5/121 (4%)

Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
              +   L       + EA+ + L    N     E     L    A  +     L   A 
Sbjct: 32  HFISANELSLMTLSYK-EAIHIFLPGTKN----MEQVRQLLCLYYAHYNRNAKQLWSDAH 86

Query: 212 ANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                         I     + + +  LL +     V   +  +  ++AA  G+   +  
Sbjct: 87  KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR 146

Query: 272 L 272
           L
Sbjct: 147 L 147

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  126 bits (319), Expect = 1e-33
 Identities = 53/265 (20%), Positives = 85/265 (32%), Gaps = 57/265 (21%)

Query: 49  ADIKDANK--RGALHFAAREGKTDVCKYLLEELKL------DVDTQD-EDGETPLLHA-- 97
           A  K      R ++  A  +      + LL  L+       D + +D E G+T LL A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 98  -ARQGHTETAKYLFEHGANPTIPSNL-----------GATALHHSAGIGNIELLTYLLSK 145
               G  +T   L +                      G TALH +    N+ L+T L+  
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 146 GAEVDSESDAG---------------TPLIWAAGHGQQEAVKVLLEH---HANPNAETED 187
           GA+V + ++                  PL  AA   Q   VK LL++    A+ +A    
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPN 247
             T L + V     T                   T    +       +   L        
Sbjct: 184 GNTVLHALVEVADNTV----------------DNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 248 VTDEDGQKPIQVAAARGNREAVEIL 272
           +T+  G  P+ +AA+ G    +  +
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  117 bits (294), Expect = 4e-30
 Identities = 49/284 (17%), Positives = 78/284 (27%), Gaps = 65/284 (22%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI---KDANKRGALHFA---AREGKTDVC 72
            +A    N   L+ +   L    K L     D         +  L  A      G+ D  
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRL----TDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 73  KYLLEE----------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
             LL+           +          G+T L  A  + +      L E+GA+    +N 
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH---HA 179
                                              PL  AA   Q   VK LL++    A
Sbjct: 134 DFFKKTKGRPGFY------------------FGELPLSLAACTNQLAIVKFLLQNSWQPA 175

Query: 180 NPNAETEDNITPLLSAVAAGSLT---------CLDLLIQAGANANIVAG--------GAT 222
           + +A      T L + V     T           + ++  GA  +            G T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
           PL +AA  G   ++  +L+             +    AA   + 
Sbjct: 236 PLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 79.4 bits (196), Expect = 8e-17
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 47/187 (25%)

Query: 112 HGANPTIPSNLGATALHHSAGIGN-------IELLTYLLSKGAEVDSESDAG--TPLIWA 162
             A    P      ++  +    N       +  L     +  + + +      T L+ A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 163 ---AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG 219
                +GQ + + +LL+     ++                    L   + A    +    
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDS--------------------LKQFVNASYTDSYY-K 100

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDED--------------GQKPIQVAAARGN 265
           G T LHIA +  +  ++  L++ GAD                     G+ P+ +AA    
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 266 REAVEIL 272
              V+ L
Sbjct: 161 LAIVKFL 167

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  121 bits (305), Expect = 3e-33
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 328 PEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH 386
           P +K  +A+  K +G+  F  + Y  A   Y +AI  +P  A   +NR+LC++++ Q E 
Sbjct: 2   PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ 61

Query: 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           ALAD +    L     KA +  G     +E +DEA        +L  E + 
Sbjct: 62  ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  119 bits (301), Expect = 1e-32
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
             +   + A + G  +  K     G +       G   LH++A  G +E+L +LL KGA+
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201
           +++      TPL+ A   G    VK+LL   A+   +  D +T   +       
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (289), Expect = 5e-31
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 153 SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA 212
           S      +WA  +G  + VK  +    + N   E    PL  A   G L  L+ L+  GA
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 213 NANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE 270
           + N       TPL  A   G    +K LL  GAD  V   DG    +    +  +  ++
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (288), Expect = 7e-31
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
              +A + G  D  K  + +   DV+   E G  PL +AA  G  E  ++L   GA+   
Sbjct: 10  EFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVK 172
           P     T L  +   G++  +  LLSKGA+   +   G T          +  ++
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  112 bits (284), Expect = 3e-30
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           ++       +   G+++ +   ++KG +V+   + G  PL +AA  GQ E ++ LL   A
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 180 NPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK 237
           + NA  + +ITPLLSAV  G ++C+ LL+  GA+  +    G T      +     +++
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 97.1 bits (243), Expect = 1e-24
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           A   G+LD      K    +G        D+    + G   LH+AA  G+ ++ ++LL +
Sbjct: 14  ALKNGDLD----EVKDYVAKG-------EDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIEL 138
              D++  D+   TPLL A  +GH    K L   GA+ T+    G TA   +       L
Sbjct: 63  -GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

Query: 139 L 139
           L
Sbjct: 122 L 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.0 bits (157), Expect = 8e-13
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLE 77
            AA  G L+    I + L  +G       ADI   +K     L  A  EG     K LL 
Sbjct: 46  YAADCGQLE----ILEFLLLKG-------ADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           +   D   +  DG T       Q      +
Sbjct: 95  K-GADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                  A   G  + +K  +  G D N T E G+KP+  AA  G  E +E L
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  118 bits (299), Expect = 3e-32
 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 3/137 (2%)

Query: 311 NNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS---D 367
           ++      P    P           + +  G+E FK  DY  A+ AYTQA+  D +    
Sbjct: 5   SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ 64

Query: 368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE 427
           A L  NR+ C ++L   + A  +A           KA YR   AL  L + D+A      
Sbjct: 65  AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124

Query: 428 GVTLDPENKELVFAFRE 444
            V+L+P+NK    A R 
Sbjct: 125 CVSLEPKNKVFQEALRN 141

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  118 bits (298), Expect = 4e-32
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 48  VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
                 ++    L  AAR G+ D  + L+     DV+ +DE G TPL  A   GH E  +
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 108 YLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG 166
            L ++GA+      +G T LH +A IG++E+   LL  GA+V+++   G T    + G+G
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

Query: 167 QQEAVKVLLEHH 178
            ++  ++L + +
Sbjct: 125 NEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  118 bits (298), Expect = 4e-32
 Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 145 KGAEVDSE--SDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT 202
           +G+       SD G  L+ AA  GQ + V++L+ + A+ NA+ E  +TPL  A A G L 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            +++L++ GA+ N V A G TPLH+AA IG  EI + LLK GAD N  D+ G+    ++ 
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

Query: 262 ARGNREAVEIL 272
             GN +  EIL
Sbjct: 122 GNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  116 bits (294), Expect = 1e-31
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 33/154 (21%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           D    LL AAR G  +  + L  +GA+       G T L+ +   G++E++  LL  GA+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           V++    G TPL  AA  G  E  +VLL+H A+ NA+ +                     
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF-------------------- 112

Query: 208 IQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241
                       G T   I+   G+ ++ + L K
Sbjct: 113 ------------GKTAFDISIGNGNEDLAEILQK 134

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  122 bits (306), Expect = 2e-31
 Identities = 48/233 (20%), Positives = 81/233 (34%), Gaps = 23/233 (9%)

Query: 52  KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLF 110
           +  +        + +             +L+++   DE G TPL       + E  K+L 
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 111 EHGANPTIPSNLGATALHHSAGIGNI-------ELLTYLLSKGAEVDS----------ES 153
           +HG+N     N+G + L  +    N         LL YL       DS           +
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT 211

Query: 154 DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC----LDLLIQ 209
              T    AA +     +  +++    P     +      +             LDL   
Sbjct: 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 210 AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
                N   + G T L+IAA +G+  I+  LL  GADP + ++ G +P+   A
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.4 bits (229), Expect = 5e-21
 Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 33/194 (17%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREG---KTDVCKYL 75
                NL+    + K L   G       ++    +  G   L  A +      +   + L
Sbjct: 138 LTSIANLE----LVKHLVKHG-------SNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 76  LEELKLDVDTQDEDGETPLLHAARQ----GHTETAKYLFE--------HGANPTIPSNLG 123
           L+ L   +  +D    T L H        G +  AKY  +            P       
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246

Query: 124 ATALHHSAGIGN----IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
             +  +          +E L         ++++   G T L  AA  G    V  LL++ 
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 179 ANPNAETEDNITPL 192
           A+P    +  + P+
Sbjct: 307 ADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 9e-14
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYL--L 76
           + +  TG     K     L                  K    +    E K  + + L   
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
             +   ++ QD +G+T L  AAR G+      L ++GA+P I +  G   +   AG+
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV------------DSESDAGTPLI 160
             +                     +L +  LS   ++            + +      L 
Sbjct: 9   SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQ 68

Query: 161 WAAGHGQQEAVKVLLEHHANPNAETEDNITPLL-SAVAAGSLTCLDLLIQAGANANIVA- 218
                  QE    L    +N N+E   +       +  +      D       N NI   
Sbjct: 69  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 128

Query: 219 -GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
             G TPLH    I + E++K L+K G++    D  G+  +  A    N
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN--IVAGGATPLHIAADIGSTEII 236
            N N +       L   +          L    +N N    +      H++ D    E+ 
Sbjct: 54  VNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113

Query: 237 KCLLKAGADPNV-TDEDGQKPIQVAAARGNREAVEIL 272
                   + N+  DE G  P+    +  N E V+ L
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  118 bits (298), Expect = 8e-31
 Identities = 45/275 (16%), Positives = 71/275 (25%), Gaps = 64/275 (23%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG------ALHFAA---REGKT 69
            +    G+ D L+ +   L             + D   R        L  A      G+ 
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHK-------KRLTDEEFREPSTGKTCLPKALLNLSAGRN 62

Query: 70  DVCKYLLEELKLDVDTQ----------DEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           D    LL+  +   + +             G+T L  A  +      + L E GA+    
Sbjct: 63  DTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEH-- 177
           +           G                         PL  AA   Q   V  L E+  
Sbjct: 123 ARGRFFQPKDEGGYFY------------------FGELPLSLAACTNQPHIVHYLTENGH 164

Query: 178 -HANPNAETEDNITPLLSAVAAGS---------LTCLDLLIQAGANANIVAG-------- 219
             A+   +     T L + VA                DLL+   A               
Sbjct: 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND 224

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
           G +PL +AA  G   I + +++             
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  107 bits (269), Expect = 9e-27
 Identities = 46/264 (17%), Positives = 71/264 (26%), Gaps = 73/264 (27%)

Query: 57  RGALHFAAREGKT----DVCKYLLE---ELKLDVDTQDEDGETPLLHAA---RQGHTETA 106
           R  L      G       +  +LL     L  +   +   G+T L  A      G  +T 
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 107 KYLFEHGANPTIPSNL-----------GATALHHSAGIGNIELLTYLLSKGAEVDSESDA 155
             L +                      G TALH +        +  L+ KGA+V +++  
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 156 G---------------TPLIWAAGHGQQEAVKVLLEH---HANPNAETEDNITPLLSAVA 197
                            PL  AA   Q   V  L E+    A+   +     T L + VA
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185

Query: 198 AGS---------LTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNV 248
                           DLL+   A                                   +
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLF-------------------------PDTNLEAL 220

Query: 249 TDEDGQKPIQVAAARGNREAVEIL 272
            + DG  P+ +AA  G     + +
Sbjct: 221 LNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 25/126 (19%), Positives = 37/126 (29%), Gaps = 29/126 (23%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGK---------T 69
           AACT        I   L + G       AD++  + RG   LH                T
Sbjct: 147 AACTNQPH----IVHYLTENGH----KQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 70  DVCKYLLE------ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG 123
            +   LL                + DG +PL+ AA+ G     +++              
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD----AAA 254

Query: 124 ATALHH 129
               HH
Sbjct: 255 HHHHHH 260

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  112 bits (282), Expect = 4e-30
 Identities = 32/105 (30%), Positives = 47/105 (44%)

Query: 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAK 392
           KA EA+  G E F + D+  AV AYT+ I   P DA   SNR+    +L     A+AD  
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 393 ACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                 P++ +A  R+  A   ++++  A        T D E   
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 107

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  113 bits (285), Expect = 6e-29
 Identities = 32/106 (30%), Positives = 49/106 (46%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
             A E K +G+  F  + Y  A   Y +AI  +P  A   +NR+LC++++ Q E ALAD 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +    L     KA +  G     +E +DEA        +L  E + 
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  106 bits (268), Expect = 4e-28
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
                 +    LH AA+ G  +  K LL +   DV+ + +DG TPL  AA+ GH E  K 
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPL 159
           L   GA+    S  G T  H +   G+ E++  L +KGA+V++ S       
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  102 bits (257), Expect = 1e-26
 Identities = 45/173 (26%), Positives = 56/173 (32%), Gaps = 64/173 (36%)

Query: 84  DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
               +DG TPL +AA+ GH E  K L   GA+    S  G T LH               
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLH--------------- 47

Query: 144 SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
                             AA +G  E VK+LL   A+ NA ++D                
Sbjct: 48  -----------------LAAKNGHAEIVKLLLAKGADVNARSKD---------------- 74

Query: 204 LDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP 256
                           G TP H+A   G  EI+K L   GAD N         
Sbjct: 75  ----------------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 94.4 bits (236), Expect = 1e-23
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+ +      K+L  +G       AD+   +K G   LH AA+ G  ++ K LL +
Sbjct: 16  AAKNGHAE----EVKKLLSKG-------ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH 129
              DV+ + +DG TP   A + GH E  K L   GA+    S   +   HH
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 6e-21
 Identities = 43/127 (33%), Positives = 55/127 (43%), Gaps = 33/127 (25%)

Query: 146 GAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLD 205
           G    S+ D  TPL  AA +G  E VK LL   A+ NA ++D                  
Sbjct: 1   GHMWGSK-DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD------------------ 41

Query: 206 LLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN 265
                         G TPLH+AA  G  EI+K LL  GAD N   +DG  P  +A   G+
Sbjct: 42  --------------GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 266 REAVEIL 272
            E V++L
Sbjct: 88  HEIVKLL 94

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (256), Expect = 1e-26
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +G TPL  AAR GH E  K L E GA+       G T LH +A  G++E++  LL  GA+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 149 VDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA 179
           V+++   G TPL  AA +G  E VK+LLE  A
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.5 bits (239), Expect = 2e-24
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH AAR G  +V K LLE    DV+ +D++G TPL  AAR GH E  K L E GA+   
Sbjct: 5   PLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGA 147
               G T LH +A  G++E++  LL  GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 90.5 bits (226), Expect = 2e-22
 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
           TPL  AA +G  E VK+LLE  A+ NA+ ++  TPL  A   G L  + LL++AGA+ N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 217 V-AGGATPLHIAADIGSTEIIKCLLKAGA 244
               G TPLH+AA  G  E++K LL+AGA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.9 bits (201), Expect = 5e-19
 Identities = 40/96 (41%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L+    + K L + G       AD+   +K G   LH AAR G  +V K LLE 
Sbjct: 9   AARNGHLE----VVKLLLEAG-------ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 79  LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
              DV+ +D++G TPL  AAR GH E  K L E GA
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 8e-14
 Identities = 26/53 (49%), Positives = 38/53 (71%)

Query: 220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           G TPLH+AA  G  E++K LL+AGAD N  D++G+ P+ +AA  G+ E V++L
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 97.3 bits (243), Expect = 9e-25
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 63  AAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL 122
            +          L+      +     D    LL AAR G  +  + L  +GA+       
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL 174
           G+T LH +A  G++E++  LL  GA+V ++   G T    +  +G ++  ++L
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 96.9 bits (242), Expect = 1e-24
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 34/139 (24%)

Query: 134 GNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLL 193
            +    + L+ +G+ + S  D G  L+ AA  GQ + V++L+ + A+  A+ ++      
Sbjct: 5   HHHHHSSGLVPRGSHMGS--DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN------ 56

Query: 194 SAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDG 253
                                     G+TPLH+AA  G  E++K LL+AGAD    D+ G
Sbjct: 57  --------------------------GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90

Query: 254 QKPIQVAAARGNREAVEIL 272
           +    ++   GN +  EIL
Sbjct: 91  KTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.0 bits (232), Expect = 3e-23
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
            +   +       +  L  +G       + +  ++    L  AAR G+ D  + L+    
Sbjct: 1   GSSHHHHH----HSSGLVPRG-------SHM-GSDLGKKLLEAARAGQDDEVRILMAN-G 47

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
            DV  +D++G TPL  AAR GH E  K L E GA+       G TA   S   GN +L  
Sbjct: 48  ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 141 YL 142
            L
Sbjct: 108 IL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 195 AVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
             +         L+  G++    +     L  AA  G  + ++ L+  GAD    D++G 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG--SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58

Query: 255 KPIQVAAARGNREAVEIL 272
            P+ +AA  G+ E V++L
Sbjct: 59  TPLHLAARNGHLEVVKLL 76

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 97.0 bits (242), Expect = 1e-24
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
            +  + K +G+  FKQ  Y  AV  Y Q I   P +    SN+++  I+LG+   A+   
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT-LDPENKEL 438
           +              R     R LE    A  +    V  +D   +  
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  103 bits (259), Expect = 4e-24
 Identities = 39/121 (32%), Positives = 62/121 (51%)

Query: 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD 390
            K+A E K + ++ FK KDY  A+  Y+QAI+ +PS+A    NRSL ++R     +AL D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR 450
           A     L   + K  YR  A+   L KF  A   +   V + P +K+    ++E  +  +
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122

Query: 451 K 451
           +
Sbjct: 123 Q 123

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
           K+A + K  G++A+K+KD+  A+  Y +A + DP++ T ++N++  +   G         
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 392 KACRALRPDWP-------KACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           +    +  +         KA  R G +    EK+ +A + + + +        L
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 92.7 bits (231), Expect = 6e-23
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
             +   A   K  G+ A+KQKD+  A   Y +AI+ DPS+ T  +N++  +    +    
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 388 LADAKACRALRPDWP-------KACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           +   +    +  +         KA  R G A +       A   F+  ++   + + +
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 87.1 bits (216), Expect = 3e-20
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 21/172 (12%)

Query: 303 EETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID 362
               NL    A K      +      E  + A + K  G+E FK+ +   A+  Y +A+D
Sbjct: 12  SGRENLYFQGAKKSIYDYTD-----EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD 66

Query: 363 FDPSD----------------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY 406
           F                     +   N + C+ +      A+  A     +  +  KA Y
Sbjct: 67  FFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALY 126

Query: 407 REGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           + G A       +EA    Y+  +L+P N ++  ++   V   ++    DK 
Sbjct: 127 KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKL 178

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  + AE  +  G E F + D+  AV AYT+ I   P DA   SNR+    +L     A
Sbjct: 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +AD        P++ +A  R+  A   ++++  A        T D E   
Sbjct: 193 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.3 bits (173), Expect = 8e-14
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
             A + KA G++ +K + +  A++ Y +A +    D T L+NR+      G+ E A++  
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTL 61

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                   +          +   +           + +    ++  
Sbjct: 62  NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
           E+ K       R    +++ +Y  A+     A++            S  + R+G A H L
Sbjct: 33  ELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            D K             +R    L  L   ++          ++PE  E
Sbjct: 93  GDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAYVNPEKAE 140

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 17/109 (15%), Positives = 30/109 (27%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
           E  +K+       D   K ++    +         +P  A         +       +A+
Sbjct: 100 EYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                     P+  +      AAL  L  F EA     + +  DP    
Sbjct: 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 330 IKKKAAEAKA---RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH 386
           IK+   +A+    R     K   +  A+    +AI+ DP+       ++   I + +   
Sbjct: 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225

Query: 387 ALADAKACRALRPDWPKACYREGAALRLLEKF 418
           AL    A R    +               +  
Sbjct: 226 ALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 83.6 bits (207), Expect = 3e-19
 Identities = 32/143 (22%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF------------------DPSDATL 370
           +  K     + +G+E F QKDY  A+DAY  A+                    D  +  L
Sbjct: 6   DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65

Query: 371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT 430
            +N S C++ +G    A   +           KA +R   A     K DEA       + 
Sbjct: 66  YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125

Query: 431 LDPENKELVFAFREAVEAGRKFH 453
             P    +V    + V   R   
Sbjct: 126 NHPAAASVVAREMKIVTERRAEK 148

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
           E  K A   K +G++ F+ K Y  A+  Y  A++    D    SN S C++ +G  +  +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVV 59

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYE-GVTLDPENKEL 438
             +     L+PD+ K   R  +A   L KF +A        +  D  +  +
Sbjct: 60  EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           ++    +     RG   F  ++Y  A   + +A + DP +       +    R  + +  
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                  +   P+ P+        L     FD+A   +   + L+ +   
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 12/129 (9%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR------- 380
               +A E      +    + D+  A+  Y  AI+ +     +    +    +       
Sbjct: 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425

Query: 381 --LGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
             +     A    +    L P   +A           E  DEA   F E   L    +E 
Sbjct: 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

Query: 439 V--FAFREA 445
           +    F EA
Sbjct: 486 LQAITFAEA 494

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 18/109 (16%), Positives = 36/109 (33%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
           E+  +             + D     + + +A+  D +++++  +R      L   + A 
Sbjct: 265 ELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            D    + L P+      +         KFD+    F E     PE  E
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 10/119 (8%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E+  +           A+++  +      +++A    P    + +  +         + A
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391

Query: 388 LADAKACRALRPDWPKACYREGAALR---------LLEKFDEAANAFYEGVTLDPENKE 437
           L        L              +           +E F EA N   +   LDP +++
Sbjct: 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 5/144 (3%)

Query: 296 SESGKQLEETRNLKENNAPKDKA--PMKELPEVRPEIKKKAAEAKARGDEAFKQ--KDYL 351
             S          +   A  D++    KEL      + K++ E+  + DE+F +  + + 
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220

Query: 352 MAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA 411
             +D   +        A  L +  +          A  D K    L P    +       
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALI 279

Query: 412 LRLLEKFDEAANAFYEGVTLDPEN 435
           +       E  N F + + LD  N
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNN 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 7/78 (8%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY 406
            ++++ A +   +A   DP         +   ++    + A+   +    L     +   
Sbjct: 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK-- 485

Query: 407 REGAALRLLEKFDEAANA 424
            +        K  +   +
Sbjct: 486 LQAITFAEAAKVQQRIRS 503

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 87.1 bits (215), Expect = 5e-19
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 150 DSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNA--ETEDNITPLLSAVAAGSLTCLDLL 207
            S          +        +   L H A+ N     +DN TPL+ A AA SL   + L
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFL 254

Query: 208 IQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNR 266
           +Q GAN N   + G  PLH A  +G T +    LK GAD    D +G+ P+ +A    N 
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

Query: 267 EAVEIL 272
           + V +L
Sbjct: 315 DIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 72.1 bits (176), Expect = 6e-14
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 4/185 (2%)

Query: 71  VCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
           + K      +     +           + +    + +   E  +      + GA     S
Sbjct: 148 LTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRAS 207

Query: 131 AGIGNIELLTYLLSKGAEVD---SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
               ++  +   L+ GA+V+      D  TPLI A       A + LL++ AN N     
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP 246
              PL  A   G      L ++ GA+     + G  PL IA +  + +I+  L  A    
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE 327

Query: 247 NVTDE 251
               +
Sbjct: 328 AEAAQ 332

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 72.1 bits (176), Expect = 6e-14
 Identities = 33/149 (22%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 85  TQDEDGETPLLHAARQGHTETAKYLFEHGA--NPTIPSNLGATALHHSAGIGNIELLTYL 142
                G      +       T      HGA  N        AT L  +    ++    +L
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFL 254

Query: 143 LSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL 201
           L  GA V+    AG  PL  A   G      + L+  A+  A   +   PL  A+   + 
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

Query: 202 TCLDLLIQAGANANIVAGGATPLHIAADI 230
             + LL  A       A G        DI
Sbjct: 315 DIVTLLRLAKMREAEAAQGQAGDETYLDI 343

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
             +    L  A        C++LL+    +V+  D  G  PL HA   GHT  A    + 
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQ-NGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTP 158
           GA+     + G   L  +    N +++T LL      ++E+  G  
Sbjct: 291 GADLGARDSEGRDPLTIAMETANADIVT-LLRLAKMREAEAAQGQA 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 328 PEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH 386
           P  ++  A   K RG+  F  K++  A+  Y  AI+ DP++    SN S C+I  G  E 
Sbjct: 18  PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77

Query: 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +        ++PD  KA  R  +A   L  F +A       ++L+ +   
Sbjct: 78  VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLSLNGDFDG 127

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +++ AA A    G   F + + L A     ++I+  P         +L       ++  
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEF 295

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               +    L P++P   Y  G    +L+ +  A   F +  +L+PEN
Sbjct: 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 17/109 (15%), Positives = 35/109 (32%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
            +                +++       + +A+D +P       +R   +  L   ++A 
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            D +  ++L P+      +    L    KF E+   F E     P   E
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 15/93 (16%), Positives = 31/93 (33%)

Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA 404
           F  +DY  A + + +A   +P +       +    + G+   + A     +   P  P+ 
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

Query: 405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                  L     FD A   +     L+   ++
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 17/131 (12%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNR------------- 374
                  E      +    + D+  A+  Y  A   +     +                 
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431

Query: 375 ---SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL 431
                  +   +   A+        L P   +A          +EK DEA   F +   L
Sbjct: 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491

Query: 432 DPENKELVFAF 442
                E + A 
Sbjct: 492 ARTMDEKLQAT 502

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 18/105 (17%), Positives = 25/105 (23%), Gaps = 1/105 (0%)

Query: 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD 390
                   A          Y   + A T       + A  L    +          A   
Sbjct: 206 ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265

Query: 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
            +    L P  P +       L   E   E    F + V L+PE 
Sbjct: 266 LQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY 309

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 17/126 (13%)

Query: 329 EIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +            +KQ  +  +   + +     P+   + +  +      G  + A
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397

Query: 388 LADAKACRALRPDWPKACYREGAAL----------------RLLEKFDEAANAFYEGVTL 431
           +      + L     K     G  +                   EKF+ A     +   L
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457

Query: 432 DPENKE 437
           DP +++
Sbjct: 458 DPRSEQ 463

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 84.6 bits (209), Expect = 3e-18
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 16/160 (10%)

Query: 315 KDKAPMKELPEVRPEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ 367
           K     KE  E+  E K + +   K RG   FK+  Y  A+  Y + + +   +      
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186

Query: 368 ---------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF 418
                         N ++C ++L     A+        L  +  K   R G A   +  F
Sbjct: 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF 246

Query: 419 DEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           + A   F + + L P NK          +  R+    +KK
Sbjct: 247 ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 23/104 (22%), Positives = 43/104 (41%)

Query: 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA 393
             +    G +         A+  +  A+D DP +      R+  ++ +G+++ AL D   
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85

Query: 394 CRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
              L+ D+  A  + G  L    K DEA + F + +  +P   E
Sbjct: 86  VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 25/106 (23%), Positives = 48/106 (45%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
            +    +++   AF   DY  A+    + ++    DA L   R+ C+I+ G+   A++D 
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           KA   L+ D  +A Y+       L   + + +   E + LD ++K 
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 4/118 (3%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHA 387
           KK  +     +E  +   Y  A   Y   +  +PS A            C+ +  +   A
Sbjct: 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           +        + PD   A      A  + E +DEA   +      +  ++++     +A
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 13/123 (10%)

Query: 329 EIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E+    AE +  R +   K+ +   A+     A      +       S  + +LG  E +
Sbjct: 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230

Query: 388 LADAKACRALRPDWPKACY------------REGAALRLLEKFDEAANAFYEGVTLDPEN 435
           L++ + C  L  D  +                    L    ++ +A + +   +  +P  
Sbjct: 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI 290

Query: 436 KEL 438
            E 
Sbjct: 291 AEY 293

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 16/106 (15%), Positives = 44/106 (41%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                 K +  + A+   ++ +  +P +   L +R+  ++     + A+ D +  +    
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           +  +       A RLL++  +       GV  + + +E++ A+R+ 
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 15/114 (13%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           R            A+   T+ I            R    ++ G+ + A  D K      P
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 400 DWPKA---------------CYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
              +                   +         +  A     + + +   + EL
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 82.0 bits (202), Expect = 1e-17
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 175 LEHHANPNAETEDNITPLLSAVAAGSLTCL---DLLIQAGANANIV-AGGATPLHIAADI 230
           L          E + T L  AV +   T L   D L+Q   N +     G+T LH     
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPK 284
            + E +K LL+  A   + +E G+ P+ +A    +    E+L    S   +   
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.4 bits (185), Expect = 2e-15
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 72  CKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL------GAT 125
            KY+                  L  A +          +  G + T    L        T
Sbjct: 112 AKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDET 171

Query: 126 ALHHSAGIGN---IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANP 181
           ALH +    +   + ++ +L+     +D ++  G T L +       E +K+LL   A+ 
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
               E   TPL  A       C +LL QA + 
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 12/150 (8%)

Query: 105 TAKYLFEHGANP-TIPSNLGATALHHSAGIGNIELLTYLLSKGAEV-------DSESDAG 156
           TAKY+    A      +     +L  +    +I  L    + G ++       +      
Sbjct: 111 TAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDE 170

Query: 157 TPLIWAAGHGQQEAVKV---LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
           T L  A     + ++ +   L+++  N + +T    T L       +  CL LL++  A+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 214 ANIV-AGGATPLHIAADIGSTEIIKCLLKA 242
             I    G TPL IA  +      + L +A
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 5/134 (3%)

Query: 12  RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDV 71
             ++     A  T ++  L +      D  + +              ALH A R      
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH---EPDETALHLAVRSVDRTS 184

Query: 72  CKY--LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHH 129
                 L +   ++D Q   G T L +     + E  K L    A+  I +  G T L  
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244

Query: 130 SAGIGNIELLTYLL 143
           +  + +      L 
Sbjct: 245 AKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D +      ALH+       +  K LL   K  ++  +E GETPL  A R  H    + L
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELL 257

Query: 110 FEHGAN 115
            +  + 
Sbjct: 258 TQALSG 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 82.0 bits (202), Expect = 2e-17
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAAGSLT 202
               +     L  A  +    +V     +  +                 L  AV   +  
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 203 CL---DLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
            L   D +IQ G + +   A G T LH AA     + +K LLK  A     +E G+  + 
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264

Query: 259 VAAARGNREAVEIL 272
           +A  + ++E  E+L
Sbjct: 265 IARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.5 bits (180), Expect = 1e-14
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 14/151 (9%)

Query: 73  KYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNL------GATA 126
           KY+          + +     L  A       +    F +G +   P             
Sbjct: 138 KYVEHRFARRCTPEPQ----RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV 193

Query: 127 LHHSAGIGN---IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN 182
           LH +  + N   + L+ +++  G  +D+++  G T L +AA + Q + +K+LL+  A   
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGAN 213
              E   T L  A       C +LL QA A 
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 14/151 (9%)

Query: 106 AKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV-------DSESDAGTP 158
           AKY+    A    P       L  +    ++  +    + G +        D+++     
Sbjct: 137 AKYVEHRFARRCTPE---PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV 193

Query: 159 L---IWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN 215
           L   +  A       V  ++++  + +A+  D  T L  A       CL LL++  A   
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

Query: 216 IV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245
            V   G T L IA      E  + L +A A 
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.3 bits (151), Expect = 6e-11
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 57  RGALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTETAKYLFEHG 113
              LH A +         L++ +      +D +  DG T L +AA     +  K L +  
Sbjct: 191 ELVLHLAVKVANQ-ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 114 ANPTIPSNLGATALHHSAGIGNIELLTYL 142
           A     +  G TAL  +    + E    L
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 335 AEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA 393
            E     G +         A+  +  A+D DP +      R+  ++ +G+++ AL D   
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 394 CRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
             AL+ D+  A  + G  L    K DEA + F + +  +P  +E
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 25/114 (21%), Positives = 52/114 (45%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
            +    +++  +AF   DY  A+    + ++    DA L   R+ C+I+ G+   A++D 
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           KA   L+ D  +A Y+       L   + + +   E + LD ++K     +++ 
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 4/118 (3%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHA 387
           KK  +     +E  +   Y  A   Y   +  +PS A            C+ +  +   A
Sbjct: 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           +        + PD   A      A  + E +DEA   +      +  ++++     +A
Sbjct: 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 13/123 (10%)

Query: 329 EIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E+    AE +  R +   K+ +   A+     A      +       S  + +LG  E +
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207

Query: 388 LADAKACRALRPDWPKA------------CYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           L++ + C  L  D  +                    L    ++ +A + +   +  +P  
Sbjct: 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV 267

Query: 436 KEL 438
            E 
Sbjct: 268 AEY 270

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 15/114 (13%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           R            A+   T+ I            R    ++ G+ + A  D K      P
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 400 DWPKA---------------CYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
              +                   +         +  A     + + +   + EL
Sbjct: 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 12/81 (14%), Positives = 33/81 (40%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                 K +  + A+   ++ +  +P +   L +R+  ++     + A+ D +A +    
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337

Query: 400 DWPKACYREGAALRLLEKFDE 420
           +  +       A RLL++  +
Sbjct: 338 NDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 13/108 (12%), Positives = 25/108 (23%), Gaps = 15/108 (13%)

Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRS---------------LCWIRLGQAEHALA 389
            KQ     A D + + +  +PS+       S               L          A+ 
Sbjct: 82  LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141

Query: 390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                  +     +             +  +A +       L  +N E
Sbjct: 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAA---G 199
               +     L  A  +    +V     +  +                 L  AV      
Sbjct: 126 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 185

Query: 200 SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           SL  +D +IQ G + +   A G T LH AA     + +K LLK  A     +E G+  + 
Sbjct: 186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 245

Query: 259 VAAARGNREAVEIL 272
           +A  + ++E  E+L
Sbjct: 246 IARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 94  LLHAARQGHTETAKYLFEHGANPTIPSNL------GATALHHS---AGIGNIELLTYLLS 144
           L  A       +    F +G +   P             LH +   A   ++ L+ +++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 145 KGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC 203
            G  +D+++  G T L +AA + Q + +K+LL+  A      E   T L  A       C
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 204 LDLLIQA 210
            +LL QA
Sbjct: 256 EELLEQA 262

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 16  QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD--VCK 73
           Q+   A C  +L  + +      D G+ L    A    A +   LH A +          
Sbjct: 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ---APEELVLHLAVKVANQASLPLV 190

Query: 74  YLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI 133
             + +    +D +  DG T L +AA     +  K L +  A     +  G TAL  +   
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 134 GNIELLTYL 142
            + E    L
Sbjct: 251 HHKECEELL 259

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 3/130 (2%)

Query: 316 DKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRS 375
           D   +  L  +  +      +  A G   ++   +  A   +      D  DA       
Sbjct: 3   DGGTLAMLRGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG 59

Query: 376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
            C   LG  E AL        +  + P+  +        L   D A + FY    L    
Sbjct: 60  ACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

Query: 436 KELVFAFREA 445
                    A
Sbjct: 120 PAHEALAARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL---RPDW 401
                Y  A+ +Y+     D ++     + + C ++LG  + A +   + RAL   +P  
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

Query: 402 PKACYREGAALRLLEKFDE 420
                R GA L  +    +
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 70.4 bits (172), Expect = 1e-13
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----------------TLL 371
           E    A   K  G+  FK++    A+  Y  AI +   D                     
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH 233

Query: 372 SNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL 431
            N + C I+L + + A+             PKA +R G A   L + D A + F +    
Sbjct: 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293

Query: 432 DPENKELVFAFREAVEAGRKFHGTDKK 458
            P++K +    R   E  +  +   K+
Sbjct: 294 APDDKAIRRELRALAEQEKALYQKQKE 320

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.1 bits (170), Expect = 6e-13
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
             +              F+ +    +    T AI  +P  A   SN    +   GQ + A
Sbjct: 27  RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   +    L+PD+        AAL      + A  A+   +  +P+   
Sbjct: 87  IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           +     AEA    G+   ++     A++ Y  A+   P       N +   +  G  E A
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +    +     PD        G  L+ L + +EA   + + +   P    
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E++    +A     +   ++     A D Y  A+   P+ A  L+N +      G  E A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   +    + P++  A     + L+   K  EA   + E + + P   +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 23/96 (23%), Positives = 35/96 (36%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                    D   AV AY  A+ ++P    + S+       LG+ E A A        +P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           ++  A    G       +   A + F + VTLDP  
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +    A          ++Q    +A+D Y +AI+  P       N +      G    A
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                    L P    +        R     +EA   + + + + PE   
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +     +A    G+   + + +  AV AY +A+   P+ A +  N +  +   G  + A
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   +    L+P +P A      AL+      EA + +   + L P + +
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E +   A A    G     Q +  +A+  + +A+  DP+      N           + A
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +A      +L P+                  D A + +   + L P   +
Sbjct: 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           +            G+          A   Y +AI+  P+ A   SN    +   G+   A
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           +   +    L P++  A    G  L+    FD A  A+   ++L P +
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                ++  D+  A     Q    +P +  +L   S    +  + + +   +       P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
              +A    G   +   +  EA   +   + L P+  +
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +    A++     +   +Q +   AV  Y +A++  P  A   SN +    + G+ + A
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 388 LADAKACRALRPDWPKACYREGAALRLLE 416
           L   K    + P +  A    G  L+ ++
Sbjct: 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 16/144 (11%)

Query: 310 ENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF------ 363
            ++ P          +   +I   + + K  G+  FK +++ MA+  YT+ + +      
Sbjct: 199 GDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA 258

Query: 364 DPSDA----------TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR 413
              DA          + + N   C +++   + A+        + P   KA YR     +
Sbjct: 259 AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ 318

Query: 414 LLEKFDEAANAFYEGVTLDPENKE 437
            L+++D+A     +   + PE+K 
Sbjct: 319 GLKEYDQALADLKKAQEIAPEDKA 342

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 67.8 bits (165), Expect = 2e-12
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 15/155 (9%)

Query: 319 PMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSDA----- 368
             +       E  ++AA  K +G   FK   Y+ AV  Y + + +       S+      
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312

Query: 369 -----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423
                    N ++C+++L +   A+        L     K  YR G A  L+ +F+ A  
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372

Query: 424 AFYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
            F + + ++P+NK          +  ++ +  D++
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 16/99 (16%), Positives = 27/99 (27%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
             D      D      A  + +   P     ++          +   A    +      P
Sbjct: 29  LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           + P      G AL    + + AA A+     L PE   +
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 17/90 (18%), Positives = 29/90 (32%)

Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408
           D    +     A+   P D       +   + +G         +   AL P  P+A  R 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 409 GAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           G      ++  EAA    +     PE+  +
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 20/103 (19%), Positives = 29/103 (28%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G   + Q+ +  A     QA D  P    +           GQAE A A       L P
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF 442
           + P    +     R L  +        +      +    V  F
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 5/138 (3%)

Query: 301 QLEETRNLKE--NNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYT 358
            + E  ++     +A    A +K++  +  ++     +  +   + + +     A   + 
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFR 60

Query: 359 QAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF 418
               +D  +   +   +  +    Q + A        AL  +     +  G     L+  
Sbjct: 61  FLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120

Query: 419 DEAANAFYEGVTLDPENK 436
            +A   F   +    + K
Sbjct: 121 LKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 12/93 (12%), Positives = 27/93 (29%)

Query: 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407
            D + +                 + + +  +   G+ E A    +               
Sbjct: 16  IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG 75

Query: 408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVF 440
             A  ++ E+F +AA+ +     L   +   VF
Sbjct: 76  LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 329 EIKKKAAEAK-----ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ 383
            +  + +         +     +  DY  A +A+T+AI+ +  DA    N +     + +
Sbjct: 13  GLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNE 72

Query: 384 AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            E ALA       L      A Y  G    + E + EA + F + +    EN +
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD 126

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E+   AA A    G+    ++ Y  A D + +A+     +  L        ++L Q + A
Sbjct: 85  ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           L   +    L  +  +A ++ G  L      DEA + F      DP + +
Sbjct: 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
               +  +     G    K +   +A+    +A++ + +D        +C    G  + A
Sbjct: 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           L+   A     P    A Y  G      E  ++A     + + + P++  
Sbjct: 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E+ +   EA    G     +     A+  +    + DP  A    N  + +      E A
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEK 417
           L        ++PD   A + +         
Sbjct: 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 12/83 (14%), Positives = 22/83 (26%)

Query: 353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL 412
             +     +     +  L       +    Q + AL   +A     P +  A    G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 413 RLLEKFDEAANAFYEGVTLDPEN 435
           +       A  A+  G+      
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSR 86

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 4/128 (3%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +   A  + G      +     +    QA    P     +++       L   +  
Sbjct: 372 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRL 431

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA---FRE 444
           L        L P    A    G     LE      +     +     +  +  A    R 
Sbjct: 432 LPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRP 491

Query: 445 AVEAGRKF 452
           A++A +K 
Sbjct: 492 ALDAVKKL 499

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 13/96 (13%), Positives = 22/96 (22%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A    G   + LE          +   L P+ 
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +   A  +        +     +    QA    P     +++       L   +  
Sbjct: 66  NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           L        L P+   A        + LE          +   L PE   
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 13/96 (13%), Positives = 22/96 (22%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA    P     +++       L   +  L        L P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A        + LE          +   L P+ 
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 14/108 (12%), Positives = 27/108 (25%), Gaps = 1/108 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +   A  +        +     +    QA    P     +++       L   +  
Sbjct: 100 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQAL 159

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           L        L P+   A    G   + LE          +   L P+ 
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 1/108 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +   A  + G      +     +    QA    P     +++ S     L   +  
Sbjct: 236 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL 295

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           L        L P    A    G   + LE          +   L P+ 
Sbjct: 296 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 13/96 (13%), Positives = 21/96 (21%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A        + LE          +   L PE 
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +   A  +        +     +    QA    P     +++       L   +  
Sbjct: 338 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 397

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           L        L P+   A        + LE          +   L P+   
Sbjct: 398 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 14/98 (14%), Positives = 23/98 (23%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA    P     +++       L   +  L        L P
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
               A    G   + LE          +   L P+   
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 277

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 15/98 (15%), Positives = 24/98 (24%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA    P     +++       L   +  L        L P
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   A    G   + LE          +   L PE   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVV 413

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 2/88 (2%)

Query: 348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR 407
             +  A+      ++  P     +++       L   +  L        L P    A   
Sbjct: 54  HAWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 111

Query: 408 EGAALRLLEKFDEAANAFYEGVTLDPEN 435
                + LE          +   L PE 
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 4/101 (3%)

Query: 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396
                     +    +A +     +  D      ++ R    +   +A HA  +A     
Sbjct: 7   HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGG--VTAVEAVHAWRNALTGAP 64

Query: 397 --LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
             L P+   A        + LE          +   L P+ 
Sbjct: 65  LNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 3/101 (2%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR---A 396
             D  FK  +Y  A++ + +      +   + + R++C+  L + + A  D +       
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                       G  L    +   A   +   V  D    +
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
              K  +   +  G    K+    +A+  Y  A+D D +   +       +   G    A
Sbjct: 68  NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   +         PK  Y  G A    +++ +A ++F + + L P    
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 11/113 (9%), Positives = 30/113 (26%), Gaps = 4/113 (3%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDY---LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA 384
             K  +      R    ++   Y      ++ Y   ++   + +          ++ GQ 
Sbjct: 31  AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90

Query: 385 EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
             A+   +A             + G+       F  A     + +     + +
Sbjct: 91  SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK 143

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 12/121 (9%)

Query: 329 EIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA--- 384
                  +     G   +  K+Y+ A  ++ + ++  P+       R+            
Sbjct: 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ 195

Query: 385 EHALAD--------AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK 436
             A           A      + +  +A         +     +A  A+   + LDP NK
Sbjct: 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

Query: 437 E 437
           +
Sbjct: 256 K 256

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.2 bits (142), Expect = 6e-11
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G   +   +Y  ++D + +AI  DP ++     +      L + E A+        +  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 400 D--WPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D         +  ALR +E  +  A        L+  +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 15/95 (15%), Positives = 31/95 (32%)

Query: 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398
            + D  F +  ++  +   T+ ++ DP +  +           G+       +       
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369

Query: 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433
           P+        G     + K  EA   F +  T+DP
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 1/118 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +  +   A          + ++  A+ AYT A               +  ++LG    A
Sbjct: 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
               ++  AL    P      G           A N F   + L  + +     +   
Sbjct: 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDF-------DPSDATLLSNRSLCWIRLGQAEHALADAK 392
            G  AF + D   A++ +  A+         +   A   +N    + +L   + A+    
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 393 ACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
               L  +               +    A    +E + + P    
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 1/111 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           +   + A    A G           A   ++++   DP         +  +   G+ + A
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           ++       L           G     L     A         L   +  L
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 10/91 (10%), Positives = 26/91 (28%)

Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA 404
            +  +           +D  P  A       + ++ + +   A         + P +  A
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

Query: 405 CYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
                 +  +  + D+A +A+     L    
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 3/136 (2%)

Query: 309 KENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA 368
           + N   KD+    +L      IK +A+    RG       ++  A + Y +A+  D    
Sbjct: 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234

Query: 369 TLLSNRSLCWIRLGQAEHALADAKACR---ALRPDWPKACYREGAALRLLEKFDEAANAF 425
                     +     E  L               + ++ Y         E     A  +
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294

Query: 426 YEGVTLDPENKELVFA 441
              +    ++ +L+  
Sbjct: 295 LSSINGLEKSSDLLLC 310

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 14/94 (14%), Positives = 28/94 (29%)

Query: 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403
               +D L   + Y  +I+     + LL  ++       +    LA       + P    
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340

Query: 404 ACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                 A+L    + ++      + V   PE   
Sbjct: 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 322 ELPEVRPEIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR 380
            L +     +K  A   A  G    K K Y  A+DA  Q +    +DA + +  +L ++ 
Sbjct: 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562

Query: 381 LGQAEHALADAKACRALRPDWPKACYREGAALR 413
                 A+       A+ P+   A      AL 
Sbjct: 563 KKIPGLAITHLHESLAISPNEIMASDLLKRALE 595

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 17/99 (17%), Positives = 32/99 (32%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                 +Q     A+  Y +AI   P+ A   SN       +   + AL        + P
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
            +  A     +  +      EA  ++   + L P+  + 
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 19/98 (19%), Positives = 39/98 (39%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
             +   +Q +   AV  Y +A++  P  A   SN +    + G+ + AL   K    + P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +  A    G  L+ ++    A   +   + ++P   +
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 22/98 (22%), Positives = 43/98 (43%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G+   + +D   A+  YT+AI  +P+ A   SN +      G    A+A  +    L+P
Sbjct: 83  MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D+P A       L+++  + +      + V++  +  E
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAA 422
             P+ A  L+N +      G  E A+   +    + P++  A     + L+   K  EA 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 423 NAFYEGVTLDPEN 435
             + E + + P  
Sbjct: 64  MHYKEAIRISPTF 76

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 2/98 (2%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           +I    A+A            +   A+ +Y  A+   P       N + C   +      
Sbjct: 105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF 425
               K   ++  D  +   R  +           ++ F
Sbjct: 165 DERMKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGF 201

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 3/126 (2%)

Query: 320 MKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWI 379
           +  L E+  +      +  +     ++   Y  A   +      D  D+        C  
Sbjct: 10  IAMLNEISSD---TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ 66

Query: 380 RLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV 439
            +GQ + A+        +    P+  +     L    +  EA +  +    L     E  
Sbjct: 67  AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126

Query: 440 FAFREA 445
                 
Sbjct: 127 ELSTRV 132

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 28/97 (28%)

Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408
                        +        L + +    + G  E A    +A   L     +     
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           GA  + + ++D A +++  G  +D       F   E 
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 13/88 (14%), Positives = 29/88 (32%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G        Y +A+ +Y+     D  +     + + C ++ G+   A +     + L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYE 427
           + P+          +LE         +E
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 6e-10
 Identities = 14/98 (14%), Positives = 23/98 (23%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L P
Sbjct: 232 HDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 291

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D   A    G   + LE          +   L P+   
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 9e-09
 Identities = 13/96 (13%), Positives = 23/96 (23%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P+    +++       L   +  L        L P
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D   A        + LE          +   L P+ 
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 13/98 (13%), Positives = 22/98 (22%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L P
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D   A        + LE          +   L P+   
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 363

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 15/96 (15%), Positives = 24/96 (25%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA    P     +++       L   +  L        L P
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 359

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D   A    G   + LE          +   L P+ 
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 12/96 (12%), Positives = 21/96 (21%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA          +++       L   +  L        L P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A        + LE          +   L P+ 
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 14/96 (14%), Positives = 23/96 (23%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P+    +++       L   +  L        L P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D   A    G   + LE          +   L  E 
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 14/96 (14%), Positives = 23/96 (23%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA          +++ +     L   +  L        L P
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D   A    G   + LE          +   L P  
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 14/98 (14%), Positives = 23/98 (23%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L P
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D   A    G   + LE          +   L P+   
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 13/96 (13%), Positives = 20/96 (20%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                         +    QA    P     +++       L   +  L        L P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D   A    G   + LE          +   L    
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 12/96 (12%), Positives = 20/96 (20%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G      +     +    QA    P     +++       L   +  L        L  
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A        + LE          +   L P  
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 11/96 (11%), Positives = 21/96 (21%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L  
Sbjct: 639 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 698

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           +   A        + LE          +   L P+ 
Sbjct: 699 EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 11/98 (11%), Positives = 21/98 (21%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    Q     P+    +++       L   +  L        L P
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D   A        + L           +   L P+   
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVV 532

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 1/96 (1%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                   +     +    QA    P     +++       L   +  L        L P
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 393

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           D   A    G   + LE          +   L P+ 
Sbjct: 394 DQVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 14/107 (13%), Positives = 25/107 (23%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
            +      A A        +     +    QA    P     +++       L   +  L
Sbjct: 390 GLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
                   L P    A        + LE   +      +   L P+ 
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQ 496

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 1/121 (0%)

Query: 329 EIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            + ++   A A         +     +    QA    P     +++       L   +  
Sbjct: 695 GLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 754

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447
           L        L P    A        + LE          +   L       + +     +
Sbjct: 755 LPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814

Query: 448 A 448
           A
Sbjct: 815 A 815

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 12/96 (12%), Positives = 25/96 (26%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           RG     +  +          ++  P+    +++ +     L   +  L        L P
Sbjct: 164 RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 223

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A        + LE          +   L P+ 
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 17/98 (17%), Positives = 32/98 (32%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           RG          +A + ++QA+   P    + +   +   + G  + A     +   L P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +  A    G AL    +   A +        DP +  
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 346 KQKDYLMAVDAYTQAI----DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW 401
                 + +    Q +      D   A LL  R + +  LG    A  D     A+RPD 
Sbjct: 17  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 76

Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           P+     G  L     FD A  AF   + LDP    
Sbjct: 77  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           +  ++  A +A+   ++ DP+      NR +     G+ + A  D  A     P+ P   
Sbjct: 89  QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                A + L++  +A     +      + + 
Sbjct: 149 LWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQW 179

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 4/101 (3%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR---A 396
           RG   +      +A D        DP+D        L   +L + +      +       
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176

Query: 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +  W    +  G  +      +       +  +L     E
Sbjct: 177 EQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSE 216

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 11/98 (11%), Positives = 21/98 (21%)

Query: 328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            + +      +       +Q          T         +         ++ LG  + A
Sbjct: 175 DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF 425
            A  K   A               L LL +  +     
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 3/110 (2%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC---WIRLGQAE 385
           +              A ++ D   A +   Q  +    +    +               E
Sbjct: 139 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 198

Query: 386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
              ADA    +L     +  +  G     L   D A   F   V  +  N
Sbjct: 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 1/123 (0%)

Query: 316 DKAPMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRS 375
           D+  M     V    +  +  A        K ++Y  A   Y + +   P++   L   +
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95

Query: 376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL-RLLEKFDEAANAFYEGVTLDPE 434
              +  GQ + AL   +    L  D   A    G       E+  +     Y+ ++   +
Sbjct: 96  EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155

Query: 435 NKE 437
            + 
Sbjct: 156 MQY 158

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH- 386
           +      +  +A  +    +     A+  Y + +  +  +          +    + E  
Sbjct: 82  QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141

Query: 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
            L       +       A YR+G +     ++++A N+  + +   P  
Sbjct: 142 KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 16/122 (13%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----------------TLLSNRS 375
           +   E   +   A +      AV  + Q I  +                     L +  +
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           L + +    + A    K      P+                +  +A   + + + L+ +N
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

Query: 436 KE 437
             
Sbjct: 122 LA 123

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
                  +     G    + + Y +AV    +  + +P +  +     +    LG+ + A
Sbjct: 70  ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   K    LRP+  K       +   + + +EA   F +   LD     
Sbjct: 130 IDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 20/98 (20%), Positives = 34/98 (34%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G    K   Y  AV    Q  D D  D  +  +  + +++ G  +      +   A  P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D  K     G     ++K+D A     +    +P N  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 8/74 (10%), Positives = 18/74 (24%)

Query: 364 DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423
           D        ++ +   + G+   A+   +                G A       D    
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 424 AFYEGVTLDPENKE 437
                +   P+N +
Sbjct: 64  LLERSLADAPDNVK 77

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 25/90 (27%), Positives = 41/90 (45%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           KQ DY  A++ Y +A++ DP  A    N    + + G  + A+   +    L P   +A 
Sbjct: 47  KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           Y  G A      +DEA   + + + LDP +
Sbjct: 107 YNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 26/92 (28%), Positives = 42/92 (45%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           KQ DY  A++ Y +A++ DP  A    N    + + G  + A+   +    L P   +A 
Sbjct: 13  KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           Y  G A      +DEA   + + + LDP + E
Sbjct: 73  YNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 19/114 (16%), Positives = 33/114 (28%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
           +   +    G    ++ D   AV  +  A+  DP                 Q   A++  
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           + C  L+PD   A      +        +A     + +   P    LV    E 
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 22/92 (23%), Positives = 40/92 (43%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
              +Y  AVD +T A+   P+D  L +          Q+E A+A  +    L+P + ++ 
Sbjct: 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 288

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           Y  G +   L    EA   F E + +  +++ 
Sbjct: 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRG 320

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAK 392
             +K           +L   + +  A+  DP   D  +     + +   G+ + A+    
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

Query: 393 ACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           A  ++RP+      + GA L    + +EA  A+   + L P    
Sbjct: 242 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 16/125 (12%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           +   K  EA +  G    + +  L+A+ A  + ++  P + T L   ++ +        A
Sbjct: 92  QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151

Query: 388 LADAKACRALRPDWPKAC---------------YREGAALRLLEKFDEAANAFYEGVTLD 432
               +      P +                    R   +L     F E    F   V LD
Sbjct: 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211

Query: 433 PENKE 437
           P + +
Sbjct: 212 PTSID 216

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 315 KDKAPMKELPEVRPEIKKKAAEAKARGDEAFK-QKDYL-MAVDAYTQAIDFDP----SDA 368
           + K+ ++   +   +++ +  E   R  EA     DY  +    Y +   F+      D 
Sbjct: 5   RAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDH 64

Query: 369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG 428
                  L  ++ G   +A+   +A     P   +A    G      E+   A +A    
Sbjct: 65  PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124

Query: 429 VTLDPENKE 437
           + L P+N+ 
Sbjct: 125 LELKPDNQT 133

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 11/91 (12%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
                  AV AY +A++  P       N  +  I LG    A+        ++       
Sbjct: 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322

Query: 406 YREGA-----------ALRLLEKFDEAANAF 425
              GA           AL +L + D    A 
Sbjct: 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 1/118 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            ++K    A  A G     + ++  A+ AY  A          +    L +     ++ A
Sbjct: 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
                   ++ P+ P   +  G       ++  A   F + +         V   +  
Sbjct: 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398
           +  +  +   D+ M     +  ++ DP  A+ L       + L +A      +     L 
Sbjct: 27  SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86

Query: 399 PDWPKACYREGAALRLLEKFDEAANAFYE-GVTLDPENKE 437
           P  P + +  G    ++   +E A  +     TL+     
Sbjct: 87  PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSD---------ATLLSNRSLCWIRLGQAEHALAD 390
            G  AF+  ++  A   +  A++   +            LL+N      +L +   AL  
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +    L P         G    L+  F+ A + F+  + L  ++  
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 19/81 (23%), Positives = 30/81 (37%)

Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA 404
            K K Y  A+D + QA+   P +A+  S        +G  E+A+        LR D   +
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

Query: 405 CYREGAALRLLEKFDEAANAF 425
               G  + +     EA    
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 2/112 (1%)

Query: 329 EIKKKAAEA-KARGDEAFKQ-KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH 386
           ++      +  A G            A    ++A   + +           +    + + 
Sbjct: 84  DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143

Query: 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           A+A       L           G    L      A   F + +++ PE+  +
Sbjct: 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 15/127 (11%), Positives = 29/127 (22%), Gaps = 1/127 (0%)

Query: 328 PEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH 386
                   E     G    K  +   A  A+       P       +  L      +   
Sbjct: 14  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73

Query: 387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446
           A+      R L P           +       + A  +    +   P+ ++L     +A 
Sbjct: 74  AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133

Query: 447 EAGRKFH 453
                 +
Sbjct: 134 VDIDDLN 140

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 19/98 (19%), Positives = 39/98 (39%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                    +Y         A++ +P+DA L ++  + +      + A A+ +    LRP
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           D  +   + GA L    +  EA +A+   + ++P    
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           +   +  EA ++ G    + +   +A+ A   A   DP D  + +  ++       A  A
Sbjct: 49  QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108

Query: 388 LADAKACRALRPDWPKACYR---------------EGAALRLLEKFDEAANAFYEGVTLD 432
           LA  +A    +P + +                   E        ++ E     +  + ++
Sbjct: 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168

Query: 433 PEN 435
           P +
Sbjct: 169 PND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 16/89 (17%), Positives = 24/89 (26%)

Query: 349 DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE 408
             L     Y    +             L  ++L     A    +A     P+  +A    
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 409 GAALRLLEKFDEAANAFYEGVTLDPENKE 437
           G      EK   A  A      LDP++  
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIA 90

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 16/126 (12%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATL---------------LS 372
            +  K      A       + +   A+ +    +   P    L               + 
Sbjct: 83  MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142

Query: 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD 432
           +    +    +         A   + P+  +     G    L   +D AA      V L 
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202

Query: 433 PENKEL 438
           P++ +L
Sbjct: 203 PDDAQL 208

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
                  A+DAY +A+D +P    ++ N ++ +  + Q + A         ++       
Sbjct: 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277

Query: 406 YRE------------GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV 446
                             L ++ + D     + +   ++P  KE  F  +  +
Sbjct: 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN--VEPFAKE--FGLQSML 326

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 17/92 (18%), Positives = 40/92 (43%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
              ++  A+DA+  A+   P D +L +          ++E A+        ++P + ++ 
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           Y  G +   L  + EA + F   ++L  +++ 
Sbjct: 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 23/109 (21%), Positives = 38/109 (34%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
           K    A   G +  K+ D  + +     AI  DP DA       +        + A+   
Sbjct: 63  KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF 440
           + C  L+P+  KA      +        +A  A    +  +P+ K LV 
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVK 171

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 17/107 (15%), Positives = 28/107 (26%)

Query: 331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD 390
           +       +   EA  Q     +   Y    +    D        L  ++ G     +  
Sbjct: 28  EMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87

Query: 391 AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +A     P   +A    G      E    A  A    + L P N +
Sbjct: 88  MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK 134

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 14/120 (11%), Positives = 37/120 (30%), Gaps = 8/120 (6%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
                 AEA +  G    + ++   A+ A  + ++  P++   L   ++ +      + A
Sbjct: 93  LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447
               K      P +      +  +  L  +  ++              + +   + EA  
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS-------SVLEGVKELYLEAAH 205

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E++    +A  A             A +A    I  +P    L+ N+        +   +
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186

Query: 388 LADAKACRALRPDWPKACYRE------------GAALRLLEKFDEAANAFYEGVTLDPEN 435
             D+     ++  + +A ++             G    L  +F+ A +AF   +T+ PE+
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

Query: 436 KEL 438
             L
Sbjct: 247 YSL 249

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 340 RGDEAFK-QKDYLMAVDAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRA 396
           R  ++           + Y +A   +    D  L +   + +   G+   A+    A   
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241

Query: 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +RP+      R GA L   ++ +EA  A+   + + P    
Sbjct: 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 51.2 bits (124), Expect = 3e-08
 Identities = 27/92 (29%), Positives = 45/92 (48%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           KQ DY  A++ Y +A++ DP++A    N    + + G  + A+   +    L P+  +A 
Sbjct: 21  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           Y  G A      +DEA   + + + LDP N E
Sbjct: 81  YNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           KQ DY  A++ Y +A++ DP++A    N    + + G  + A+   +    L P+  +A 
Sbjct: 55  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114

Query: 406 YREGAALRLL 415
              G A +  
Sbjct: 115 QNLGNAKQKQ 124

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 11/110 (10%)

Query: 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWI-----------RLGQAEHA 387
                    +  + +V     A+  D  D          ++              QA  A
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            A A+         P          +  E + EA   F +   LDP   E
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 18/146 (12%), Positives = 37/146 (25%), Gaps = 3/146 (2%)

Query: 296 SESGKQLEETRNLKENNAPKDKAP--MKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMA 353
            + G+        +E      K    +  L   R    +  +   A   +   Q++    
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKT 87

Query: 354 VDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREGAAL 412
           +    + +     +A  L  +          +  A         L P+  +A  + G   
Sbjct: 88  LQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147

Query: 413 RLLEKFDEAANAFYEGVTLDPENKEL 438
                   A   F   +T       L
Sbjct: 148 WKKGDVTSAHTCFSGALTHCKNKVSL 173

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 337 AKARGDEAFKQKDYLMAVDAYTQAIDFD---PSDATLLSNRSLCWIRLGQAEHALADAKA 393
                +     K    A+ AY QA   D    S+  L  NR+           AL     
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 394 CRALRPDWPKACYREGAALRLLEKFDEAANAF 425
             AL P WP+   RE   L  L +      + 
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G  A  +KD+  A+DA++         + +  N    +  L     A            
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
               A ++ G      EK+D A     E +     N
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD-AKACRALR 398
            G      K+   A  A+T++I+ D   A     R + + +  + + A+ D  +A   LR
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

Query: 399 PDWPKACYREGAALRL---------------LEKFDEAANAFYEGVTLDPENK 436
            +        G   +L                E++ +A        ++  E +
Sbjct: 103 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 364 DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423
           DP D       +   ++   A  ALA  +      PD+    Y  G     L++ D+A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 424 AFYEGVTLDPEN------KELVFAFREAVEAGRKFH 453
            + +G+ +  E        EL  A  +A       H
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
              +   A  +  QA+  +     + S  +  ++ +G+ + ALA         P      
Sbjct: 130 LLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188

Query: 406 YREGAALRLLEKFDEAANAF 425
            R  +AL L  K +EAA A 
Sbjct: 189 VRYASALLLKGKAEEAARAA 208

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL 397
           +   D    +     A+     A   +P  A L   R L +  LG+ + A A  K   AL
Sbjct: 88  RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147

Query: 398 RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
               P+           + + DEA   + + +   P++ +
Sbjct: 148 EDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G + +    Y  A+  + +A+  +P D   L   +   ++LG    AL + K   A  P
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 400 DWPKACYREGAALRLLE-----------KFDEAANAFYEGVTLDPENKE 437
            +         A   L              ++A +   +   ++P    
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 15/99 (15%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNR-----------SLCWIRLGQAEHALADAKAC 394
           K      A++     +   P                           G  E AL+  K  
Sbjct: 51  KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110

Query: 395 RALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433
             + P +     + G    LL + D+A  +  + + L+ 
Sbjct: 111 ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 60/447 (13%), Positives = 105/447 (23%), Gaps = 151/447 (33%)

Query: 70  DVCKYLLEELKLDVDTQD-EDGETPLL------HAARQGHTETAKYLFEHGANPTIPSNL 122
           D+     +    + D +D +D    +L      H        +                 
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------------- 66

Query: 123 GATALHHSAGIGNIELLTYLLSKGAE-----VDSESDAGTPLIWAAGHGQQEAVKVLLEH 177
                          L   LLSK  E     V+         + +    +Q         
Sbjct: 67  ---------------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------- 104

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIK 237
              P+  T   I               D L     N N V       +++      ++ +
Sbjct: 105 ---PSMMTRMYIE------------QRDRL----YNDNQVF---AKYNVSRLQPYLKLRQ 142

Query: 238 CLLKAGADPNVTDEDGQ----KPIQVAAARGNR-EAVEILFP-----LTSEDPSIPKWTV 287
            LL+     NV   DG     K     A        V+         L  ++ + P    
Sbjct: 143 ALLELRPAKNVL-IDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---- 195

Query: 288 DGILEYMQSESGKQLEETRNLKENNAPKDKAPMKELPEVRPEIKKKAAEAKARGDEAFKQ 347
           + +LE +Q            L     P          +    IK +    +A      K 
Sbjct: 196 ETVLEMLQ-----------KLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 348 KDY---LMAVD-----AYTQAIDF---------DPSDATLLSNRSLCWIRLGQAEHALAD 390
           K Y   L+ +          A +                 LS  +   I L      L  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 391 AKACRALR-------PDWPK-ACYRE-------GAALR------------LLEKFDEAAN 423
            +    L         D P+               ++R              +K      
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 424 AFYEGVTLDP-ENKEL--VFA-FREAV 446
           +      L+P E +++    + F  + 
Sbjct: 361 SSLN--VLEPAEYRKMFDRLSVFPPSA 385

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 10/92 (10%), Positives = 30/92 (32%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
           + K    A + + +++  + +  ++    +    +  +   A               ++ 
Sbjct: 153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                  ++ E  D AA+   +   L P + E
Sbjct: 213 LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 18/111 (16%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 316 DKAPMKELPEVRPEIKKKAAEAK-ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNR 374
           D+ P+K       + + +A +A    G    ++ +   A     +A++ DPS A   +  
Sbjct: 23  DQNPLKTD-----KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77

Query: 375 SLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAF 425
           ++ +    + + A  + +   A      +     G  L   ++++EA    
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 2/95 (2%)

Query: 345 FKQKDYLMAVDAYTQAID--FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402
           ++QK Y  A     +A      P  + +  N  L  +++ +   A    +    L  + P
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175

Query: 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                    L    ++  A   +        +N  
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/94 (10%), Positives = 22/94 (23%)

Query: 344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403
               +   M      +                L +++ G  E A    +    + P    
Sbjct: 13  GLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD 72

Query: 404 ACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           A        +   +   A   + + +  D  N  
Sbjct: 73  AHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 13/99 (13%), Positives = 26/99 (26%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G    K  +   A  A+      +P       +  L      +   A+      R L P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
                      +       + A  +    +   P+ ++L
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 21/65 (32%)

Query: 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD 432
              L  ++L     A    +A     P+  +A    G      EK   A  A      LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 433 PENKE 437
           P++  
Sbjct: 82  PKDIA 86

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 48.3 bits (114), Expect = 5e-07
 Identities = 32/140 (22%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 320 MKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------------D 367
           MK L EV       A  A +         +Y  A     +A++   +            D
Sbjct: 2   MKPLKEV-----VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD 56

Query: 368 ATLLSNRSLCWIRLGQAEHALADA-KACRA------LRPD----WPKACYREGAALRLLE 416
           A   +  +     L   + AL  A KA         L  D    W  A Y    AL  L 
Sbjct: 57  AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG 116

Query: 417 KFDEAANAFYEGVTLDPENK 436
           +  EA   F + V +  E K
Sbjct: 117 RGAEAMPEFKKVVEMIEERK 136

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKAC--RALR--PDW 401
                  A+D   QAI  +P +  L    +L   ++ +      + +     AL   P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 402 PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
                      R  ++ D+A     + +   P N  L
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 18/182 (9%)

Query: 266 REAVEIL---FPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDKAPMKE 322
           R+A E++       +E  S+  W     + Y              +K            E
Sbjct: 75  RKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134

Query: 323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL- 381
            PE+  E        +              A   + +A++  P +    S  ++   RL 
Sbjct: 135 SPELDCE--------EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186

Query: 382 --GQAEHALADAKACRALRPDWPKACYREGAAL----RLLEKFDEAANAFYEGVTLDPEN 435
               +++A+   +    L PD           L       E+  E      E +   P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 436 KE 437
            +
Sbjct: 247 TD 248

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 2/118 (1%)

Query: 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396
           A        + ++         +A++  P    +L + +  + R  + + A+   K    
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275

Query: 397 LRPDWPKACYREGAALR--LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF 452
             P+      + G   R  + +  +   N  Y    L       V   ++A EA    
Sbjct: 276 YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA--- 384
           E      +  ++      ++ +   A++   +A+++ P++A L      C+         
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 385 ----------------EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG 428
                            HA+A  K       +  + C    +   L ++++EA   F + 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360

Query: 429 VTLDPENKEL 438
            + +      
Sbjct: 361 FSKELTPVAK 370

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA 396
           A A    A   +    A   + +  D       LL+ ++ C +  G+ E A    +    
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228

Query: 397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGV-TLDPEN 435
                P+         + L K  E  N +   +      +
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 2/96 (2%)

Query: 345 FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH--ALADAKACRALRPDWP 402
            K     +A     +  D D          +   +  G  +   A    +          
Sbjct: 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200

Query: 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
                + A      +++ A     E +  D  + E 
Sbjct: 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 2/99 (2%)

Query: 329 EIKKKAAEAK-ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E   + +  K     E  + +DY  A  +   A+  DP +      R+  +  L   + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 388 LADAKACRALRPDWPKACYREGAALRL-LEKFDEAANAF 425
               +   +++PD  +     G  L   L +  E+   F
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNR--SLCWIRLGQAE 385
           +   K   A   R +     K    A +++ QA+   P  A + +N    LC  RL +  
Sbjct: 36  KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPA 94

Query: 386 HALAD-AKACRA-LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            ++A   KA      P    A   +G       +F  A       +   P+   
Sbjct: 95  ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 346 KQKDYLMAVDAYTQAI--DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK 403
           +      ++  + +A+     P+      N+ +C  + GQ   A A  K   A +P +P 
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

Query: 404 ACYREGAALRLLEKFDEAANAF 425
           A         L  +  +A   F
Sbjct: 149 AFKELARTKMLAGQLGDADYYF 170

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 2/94 (2%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +G  + KQ  + +A     +++   P         +   +  GQ   A    K  ++   
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433
                        ++ +    A  A+     L  
Sbjct: 179 VLQADDL--LLGWKIAKALGNAQAAYEYEAQLQA 210

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 353 AVDAYTQAIDF---DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG 409
           AV  Y +AI         A         +  LG+   A A         P+         
Sbjct: 9   AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68

Query: 410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE 447
             L  L ++++      + +    +++ +  ++++A+ 
Sbjct: 69  MVLYNLGRYEQGVELLLKIIAETSDDETIQ-SYKQAIL 105

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK-A 404
              +Y  A       +   P+   L    ++    LG+ E  +       A   D     
Sbjct: 39  TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98

Query: 405 CYREGAAL 412
            Y++    
Sbjct: 99  SYKQAILF 106

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKAC--RALR 398
           G+    Q DY  ++ AY QA+     +A L +  +         +H  A  +A   +AL 
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-QHMTAQTRAMIDKALA 109

Query: 399 --PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
              +   A     +   +   + +A   + + + L+   
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 1/103 (0%)

Query: 339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR 398
           ++     KQ   L         +    + + +   +++  +  G+ + +         L 
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

Query: 399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA 441
             W       G    +     EAA+A+     L P    L + 
Sbjct: 308 MSWLNYVLL-GKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALR 398
              E   Q D   A+ A  + +  +P             + +LG  + AL + ++   L 
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 399 PDWPKACYRE 408
           PD P    R+
Sbjct: 66  PDSPALQARK 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.78
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.72
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.7
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.7
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.69
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.69
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.68
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.65
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.64
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.63
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.63
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.59
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.59
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.54
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.51
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.5
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.47
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.47
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.46
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.45
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.45
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.44
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.43
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.43
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.43
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.42
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.42
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.41
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.41
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.4
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.4
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.4
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.35
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.34
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.34
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.33
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.33
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.32
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.32
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.32
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.31
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.3
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.28
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.28
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.27
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.26
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.22
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.22
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.19
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.18
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.17
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.16
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.12
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.1
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.09
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.02
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.02
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.0
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.98
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.97
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.96
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.96
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.96
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.95
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.95
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.93
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.89
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.89
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.86
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.83
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.81
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.77
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.75
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.74
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.72
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.7
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.6
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.59
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.56
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.55
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.49
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.47
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.33
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.33
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.33
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.32
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.25
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.2
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.18
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.17
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.85
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.8
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.63
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.61
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.58
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.46
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.18
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.16
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.1
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.68
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.11
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.65
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.32
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.05
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.03
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.9
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.82
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.66
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.51
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.8
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.99
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.76
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	87.01
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.98
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.82
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.71
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	83.47
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.8
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	82.12
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.93
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.84
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	81.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.28
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.92
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.08

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-44  Score=329.84  Aligned_cols=260  Identities=25%  Similarity=0.349  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~   91 (458)
                      ..+.++|+.|+..|++++|++|++..    ..+    ....+..|.||||+|+..|+.+++++|++. |.+++..+..|.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g----~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~   73 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGG----ANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTT----CCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcC----CCc----ccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCC
Confidence            46788999999999999999999872    222    222367899999999999999999999998 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC----------C-CCCcHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE----------S-DAGTPLI  160 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~----------~-~~~t~l~  160 (458)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..          + .+.||||
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999999998765          3 3449999


Q ss_pred             HHHhCCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          161 WAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      +|+..|+.+++++|++. |.+++..+..|.||||.|+..++    .+++++|+++|++++.. ..|.||||+|+..|+.+
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            99999999999999997 99999999999999999999999    99999999999999987 77999999999999999


Q ss_pred             HHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 012683          235 IIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP  280 (458)
Q Consensus       235 iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (458)
                      ++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|....
T Consensus       234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            9999999 899999999999999999999999999999999987644

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.3e-45  Score=334.61  Aligned_cols=269  Identities=23%  Similarity=0.274  Sum_probs=218.2

Q ss_pred             hhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCC--CchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC
Q 012683            7 HALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGK--GLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVD   84 (458)
Q Consensus         7 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~   84 (458)
                      +.-+.+.+.+.||.|+..|+.+.+..++...+....  .+........|.+|.||||+|+..|+.+++++|++. |.+++
T Consensus         8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~   86 (285)
T 3d9h_A            8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVN   86 (285)
T ss_dssp             ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSC
T ss_pred             ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCC
Confidence            445677889999999999999888887765332111  112233456788999999999999999999999997 99999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHh
Q 012683           85 TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAG  164 (458)
Q Consensus        85 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~  164 (458)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++....+.||||+|+.
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~  166 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR  166 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887777799999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 012683          165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA  244 (458)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~  244 (458)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++....|.||||+|+..|+.+++++|+++|+
T Consensus       167 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  246 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA  246 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999977889999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          245 DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       245 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      +++.+|..|+||||+|+  ++.+++++|+++...
T Consensus       247 d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a  278 (285)
T 3d9h_A          247 DTQAKNAEGKRPVELVP--PESPLAQLFLEREGA  278 (285)
T ss_dssp             CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC--
T ss_pred             CCCCcCCCCCCHHHHhc--CccHHHHHHHHhhcc
Confidence            99999999999999999  567999999987443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.9e-44  Score=347.44  Aligned_cols=302  Identities=31%  Similarity=0.465  Sum_probs=260.8

Q ss_pred             CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683            3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (458)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~   82 (458)
                      |+++.......+.++||.|+..|++++|++|++.    +.+     .+..+..|.||||+|+..|+.+++++|++. |.+
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~-----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~   72 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR----GAS-----PNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAK   72 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHT----TCC-----SCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCC
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc----CCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCC
Confidence            3444445566788999999999999999999986    332     245678899999999999999999999998 999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIW  161 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~  161 (458)
                      ++.++..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+.+.+..+..+ ||||+
T Consensus        73 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  152 (437)
T 1n11_A           73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  152 (437)
T ss_dssp             SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887666544 99999


Q ss_pred             HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHH
Q 012683          162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLL  240 (458)
Q Consensus       162 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll  240 (458)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+
T Consensus       153 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  232 (437)
T 1n11_A          153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL  232 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877 67999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCC
Q 012683          241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDK  317 (458)
Q Consensus       241 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (458)
                      ++|++++..+..|.||||+|+..|+.+++++|++.+... +..+....+++.+  +......+.++.+++.+...+.
T Consensus       233 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHL--VAQEGHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHH--HHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHH--HHHcCCHHHHHHHHhCCccCCC
Confidence            999999999999999999999999999999999987643 3334444444444  4445678888899988877653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.8e-43  Score=341.08  Aligned_cols=289  Identities=29%  Similarity=0.385  Sum_probs=162.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L   94 (458)
                      .++||.|+..|+.+++++|++.    +..     .+..+.+|.||||+|+..|+.+++++|++. |++++..+..|.|||
T Consensus        48 ~t~L~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L  117 (437)
T 1n11_A           48 ETPLHMAARAGHTEVAKYLLQN----KAK-----VNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPL  117 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH----TCC-----SSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhC----CCC-----CCCCCCCCCCHHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCcHH
Confidence            4567777777777777777765    222     234556677777777777777777777766 666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683           95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV  173 (458)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~  173 (458)
                      |+|+..|+.+++++|++++++.+..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..++.+++++
T Consensus       118 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  197 (437)
T 1n11_A          118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL  197 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            66666666666666666666665555566666666666666666666666665555444332 55555555555555555


Q ss_pred             HHhcCCCCCCCCCCCC---------------------------------cHHHHHHHcCCHHHHHHHHHcCCCcccc-CC
Q 012683          174 LLEHHANPNAETEDNI---------------------------------TPLLSAVAAGSLTCLDLLIQAGANANIV-AG  219 (458)
Q Consensus       174 Ll~~~~~~~~~~~~~~---------------------------------t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~  219 (458)
                      |+++|.+++..+..|.                                 ||||+|+..|+.+++++|+++|++++.. ..
T Consensus       198 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  277 (437)
T 1n11_A          198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS  277 (437)
T ss_dssp             HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCC
Confidence            5555555444444444                                 4444444444445555555544444444 34


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhcc
Q 012683          220 GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESG  299 (458)
Q Consensus       220 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (458)
                      |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|++++... +..+..+.++  +..+...
T Consensus       278 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~--L~~A~~~  354 (437)
T 1n11_A          278 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSP--LHQAAQQ  354 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCH--HHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCH--HHHHHHC
Confidence            555555555555555555555555555555555555555555555555555555554321 2222222222  2223333


Q ss_pred             chhHHhhhhhcCCCCCC
Q 012683          300 KQLEETRNLKENNAPKD  316 (458)
Q Consensus       300 ~~~~~~~~l~~~~~~~~  316 (458)
                      ...+.++.|++.++.++
T Consensus       355 g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          355 GHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             TCHHHHHHHHHTTCCSC
T ss_pred             ChHHHHHHHHHCcCCCC
Confidence            44555555555555443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.5e-42  Score=324.60  Aligned_cols=289  Identities=24%  Similarity=0.341  Sum_probs=254.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcc-cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 012683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKD-ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED   89 (458)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~   89 (458)
                      ...+.++||.||+.||+++|+.|++.    |+++     +..+ ..|.||||+||..|+.++|++|+++ |++++..+..
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~----Gadv-----n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~   91 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG----GANV-----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKN   91 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH----TCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTT
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC----CCCC-----CccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccC
Confidence            45678899999999999999999987    4443     3344 4599999999999999999999998 9999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------CCCcH
Q 012683           90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----------DAGTP  158 (458)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----------~~~t~  158 (458)
                      +.++++.++..++..++..+++.+++++..+..|.||||+|+..|+.+++++|++.|++++...           .+.||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~  171 (337)
T 4g8k_A           92 GATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  171 (337)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred             CCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence            9999999999999999999999999999999999999999999999999999999998876432           23499


Q ss_pred             HHHHHhCCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc
Q 012683          159 LIWAAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGS----LTCLDLLIQAGANANIV-AGGATPLHIAADIGS  232 (458)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~  232 (458)
                      ||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+.    ..++++|+++|++++.. ..|.||||+|+..|+
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence            999999999999999996 599999999999999998876654    35889999999999988 679999999999999


Q ss_pred             HHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcC
Q 012683          233 TEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKEN  311 (458)
Q Consensus       233 ~~iv~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (458)
                      .++|++|++. |++++.+|..|+||||+|+..|+.++|++|+++|+....      .+  ++..+......+.++.|++.
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~------~~--~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC------GD--LVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT------CC--HHHHHHHTTCHHHHHHHHHT
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CC--HHHHHHHcCCHHHHHHHHHC
Confidence            9999999985 899999999999999999999999999999999875422      12  34445556778899999999


Q ss_pred             CCCCCC
Q 012683          312 NAPKDK  317 (458)
Q Consensus       312 ~~~~~~  317 (458)
                      ++.++.
T Consensus       324 GA~~d~  329 (337)
T 4g8k_A          324 GAKEDF  329 (337)
T ss_dssp             TCCC--
T ss_pred             cCCCCC
Confidence            988763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.6e-42  Score=324.97  Aligned_cols=282  Identities=28%  Similarity=0.345  Sum_probs=243.7

Q ss_pred             CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683            3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (458)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~   82 (458)
                      |.+........+.++|+.||..|+.+.|++++..        .....+..|..|.||||+|+..|+.++|++|++. |.+
T Consensus        13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~--------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~   83 (351)
T 3utm_A           13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP--------LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GAD   83 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT--------TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             CceeeeeeccccchhHHHHHHcCCHHHHHHHHHh--------cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            4455556667788999999999999999999864        2223466788999999999999999999999998 999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHH
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIW  161 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~  161 (458)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ +|+++
T Consensus        84 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988766544 66554


Q ss_pred             ---------------------HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccc
Q 012683          162 ---------------------AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV  217 (458)
Q Consensus       162 ---------------------A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~  217 (458)
                                           ++..+..+.++.++..+......+..|.||||+|+..   +..+++++|++.|++++..
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence                                 4566777777777776665566778899999999999   5578999999999999877


Q ss_pred             -CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHH
Q 012683          218 -AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYM  294 (458)
Q Consensus       218 -~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  294 (458)
                       ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++++.+ ++..+..+.+++.+.
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~~~~g~tal~~a  320 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG  320 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCChhhhh
Confidence             6799999999999999999999999999999999999999999999999999999998764 455555566666654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.7e-42  Score=313.04  Aligned_cols=229  Identities=28%  Similarity=0.372  Sum_probs=181.9

Q ss_pred             hhhcccCCCcHHHHHHHcC-------------CHHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683           49 ADIKDANKRGALHFAAREG-------------KTDVCKYLLEELKLDVDT-QDEDGETPLLHAARQGHTETAKYLFEHGA  114 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  114 (458)
                      .+.+|.+|.||||+|+..|             +.+++++|++. |.+++. .+..|.||||+|+..|+.+++++|+++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            3567889999999999987             89999999998 777754 58999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683          115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL  192 (458)
Q Consensus       115 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  192 (458)
                      +++..+..|.||||+|+..|+.+++++|++.+. +++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  161 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL  161 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            999999999999999999999999999999987 777666544 999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHh
Q 012683          193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI  271 (458)
Q Consensus       193 ~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~  271 (458)
                      |+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+.+|+.+++++
T Consensus       162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999988 779999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCC
Q 012683          272 LFPLTSE  278 (458)
Q Consensus       272 Ll~~~~~  278 (458)
                      |......
T Consensus       242 l~~~~~~  248 (253)
T 1yyh_A          242 LDLEHHH  248 (253)
T ss_dssp             HHC----
T ss_pred             HHHHhhh
Confidence            9976543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.2e-42  Score=306.28  Aligned_cols=227  Identities=27%  Similarity=0.353  Sum_probs=208.1

Q ss_pred             hhcccCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683           50 DIKDANKRGALHFAAREGKTDVCKYLLE---ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA  126 (458)
Q Consensus        50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  126 (458)
                      +..|.+|.||||+||..|+.+++++|++   ..+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            5678899999999999999999999997   3489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCC----CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHcCC
Q 012683          127 LHHSAGIGNIELLTYLLSKGA----EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAET-EDNITPLLSAVAAGS  200 (458)
Q Consensus       127 L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~  200 (458)
                      ||+|+..|+.+++++|++.+.    +++..+..+ ||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    666555444 99999999999999999999999999988 889999999999999


Q ss_pred             HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          201 LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       201 ~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      .+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|+.++++.|.+.+
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            99999999999999987 78999999999999999999999999999999999999999999999999999998754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-43  Score=333.43  Aligned_cols=255  Identities=25%  Similarity=0.371  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcc-cCCCcHHHHHHHcCCHHHHHHHHH-------hCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKD-ANKRGALHFAAREGKTDVCKYLLE-------ELKLDV   83 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~ll~-------~~~~~~   83 (458)
                      ..+.++||.|+..| .++++.|+..           ..+..| ..|.||||+|+..|+.+++++|+.       ..|+++
T Consensus        92 ~~g~t~L~~Aa~~~-~~~~~~L~~~-----------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v  159 (373)
T 2fo1_E           92 PESPIKLHTEAAGS-YAITEPITRE-----------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV  159 (373)
T ss_dssp             --CCCHHHHHHHSS-SCCCSCCSTT-----------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred             CCCccHHHHHhcCC-chHHHHhccc-----------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            34466788888854 4566655321           234555 789999999999999988888763       349999


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCC-cHH
Q 012683           84 DTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG---AEVDSESDAG-TPL  159 (458)
Q Consensus        84 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~~-t~l  159 (458)
                      +..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+   .+++..+..+ |||
T Consensus       160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L  239 (373)
T 2fo1_E          160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  239 (373)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999988   6777666555 999


Q ss_pred             HHHHhCC---CHHHHHHHHhcCCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccc-CCCCcHHHH
Q 012683          160 IWAAGHG---QQEAVKVLLEHHANPNA--------ETEDNITPLLSAVAAGSLTCLDLLIQAG-ANANIV-AGGATPLHI  226 (458)
Q Consensus       160 ~~A~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~-~~g~t~L~~  226 (458)
                      |+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++.| ++++.. ..|.||||+
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~  319 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  319 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence            9999998   89999999999999886        5678999999999999999999999886 999987 779999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       227 A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      |+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|+++++.
T Consensus       320 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999999999999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-40  Score=306.54  Aligned_cols=260  Identities=28%  Similarity=0.338  Sum_probs=237.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      +|.||||.|+..|+++++++|++. |.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            578999999999999999999998 8899887 78899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHcCCHH
Q 012683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE----------TEDNITPLLSAVAAGSLT  202 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~~~~  202 (458)
                      |+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|.+++..          +..|.||||.|+..|+.+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            99999999999999998777655 9999999999999999999999999887          778999999999999999


Q ss_pred             HHHHHHHc-CCCcccc-CCCCcHHHHHHhcCc----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          203 CLDLLIQA-GANANIV-AGGATPLHIAADIGS----TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       203 ~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~----~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ++++|++. |++++.. ..|.||||+|+..++    .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++..
T Consensus       163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  242 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence            99999998 9999987 779999999999999    99999999999999999999999999999999999999999955


Q ss_pred             CCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCCC
Q 012683          277 SEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKDK  317 (458)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (458)
                      ..+.+..+..+.+++.++.  .....+.++.|++.++.++.
T Consensus       243 g~~~~~~~~~g~t~l~~A~--~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          243 HIEINDTDSDGKTALLLAV--ELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHH--HTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCccccCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCc
Confidence            5555666666666665554  44678899999999988753

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.3e-41  Score=299.34  Aligned_cols=224  Identities=32%  Similarity=0.510  Sum_probs=212.2

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH  128 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  128 (458)
                      .+..+.+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            356788999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCC-CCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 012683          129 HSAGIGNIELLTYLLSKG-AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL  206 (458)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  206 (458)
                      +|+..|+.+++++|++.+ .+++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999998 7777666544 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 012683          207 LIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (458)
Q Consensus       207 Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (458)
                      |++.|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++.+.+..++
T Consensus       163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999987 67999999999999999999999999999999999999999999999986665554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.8e-41  Score=299.94  Aligned_cols=225  Identities=30%  Similarity=0.368  Sum_probs=214.1

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  132 (458)
                      +..+.||||.|+..|++++++++++..+..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            45688999999999999999999998666678889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (458)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  211 (458)
                      .|+.+++++|++.|++++..+..+ ||||+|+..++.+++++|+++|.+++..+..|.||||+|+..|+.+++++|+++|
T Consensus        83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           83 AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999998777655 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          212 ANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                      ++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++++|.++++
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            999987 789999999999999999999999999999999999999999999999999999987654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.2e-41  Score=322.65  Aligned_cols=227  Identities=26%  Similarity=0.359  Sum_probs=209.5

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH  128 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  128 (458)
                      .+..|.+|.||||+||..|+.++|++|++. |++++..+..|.||||+|+..|+.++|++|+++|++++.  ..|.||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            455678899999999999999999999998 999999999999999999999999999999999996654  57999999


Q ss_pred             HHHHcCCHHHHHHHHhC----CCCCCC-----------------CC-CCCcHHHHHHhCC--CHHHHHHHHhcCCCCCCC
Q 012683          129 HSAGIGNIELLTYLLSK----GAEVDS-----------------ES-DAGTPLIWAAGHG--QQEAVKVLLEHHANPNAE  184 (458)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~----~~~~~~-----------------~~-~~~t~l~~A~~~~--~~~~~~~Ll~~~~~~~~~  184 (458)
                      +|+..|+.+++++|++.    |.+++.                 .+ .+.||||+|+..|  +.+++++|+++|++++..
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~  169 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK  169 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence            99999999999999998    666543                 33 3449999999999  999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683          185 TEDNITPLLSAVAAGSLTCLDLLIQAGAN-----ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ  258 (458)
Q Consensus       185 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~  258 (458)
                      +..|.||||+|+..|+.+++++|+++|++     ++.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  249 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY  249 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            99999999999999999999999999999     8776 67999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHhhcCCCCC
Q 012683          259 VAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       259 ~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      +|+..|+.+++++|++++..
T Consensus       250 ~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          250 LSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             HHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHHhChHHHHHHHHHcCCc
Confidence            99999999999999988653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.7e-40  Score=302.74  Aligned_cols=248  Identities=25%  Similarity=0.263  Sum_probs=193.3

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLD---VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT  125 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  125 (458)
                      ++..|.+|.||||+|+..|+.++|++|++. +.+   ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            356788999999999999999999999998 776   7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCcHHHHHHhCCC-HHHHHHHHhcCCCCCCCCCCCCc
Q 012683          126 ALHHSAGIGNIELLTYLLSKGAEVDSES--------------DAGTPLIWAAGHGQ-QEAVKVLLEHHANPNAETEDNIT  190 (458)
Q Consensus       126 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~t~l~~A~~~~~-~~~~~~Ll~~~~~~~~~~~~~~t  190 (458)
                      |||+|+..|+.+++++|++.+++.....              ...++++.+...+. ......+...+.+++..+..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            9999999999999999999987643211              11245555444433 33344555667788888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccC--CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683          191 PLLSAVAAGSLTCLDLLIQAGANANIVA--GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREA  268 (458)
Q Consensus       191 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  268 (458)
                      |||+|+..|+.+++++|+++|++++...  .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.++
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            9999999999999999999999999873  49999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCCCcchhhHHHHHHhhc
Q 012683          269 VEILFPLTSEDPSIPKWTVDGILEYMQSES  298 (458)
Q Consensus       269 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  298 (458)
                      +++|+++|... +..+..+.+++.+....+
T Consensus       241 v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          241 ARLLRAHGAPE-PEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHTTCCC-CCCC--------------
T ss_pred             HHHHHHcCCCc-CcCCCcccccccccCCcc
Confidence            99999988763 445555556665554443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-41  Score=305.46  Aligned_cols=223  Identities=26%  Similarity=0.360  Sum_probs=176.2

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 012683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLD--------VDTQDEDGETPLLHAARQGHT-ETAKYLFEHGANPTIPSNL  122 (458)
Q Consensus        52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~  122 (458)
                      +|..+.++|+.||..|++++|++|++. +.+        ++..+..|.|||+.|+..++. .++++|++.|++++..|..
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~-~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEW-TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTC-C----------------------------------------CCCCTTCCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHC-CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            566678999999999999999999987 543        455677899999999988765 5889999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683          123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSL  201 (458)
Q Consensus       123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  201 (458)
                      |.||||+|+..|+.+++++|++.|++++..+..+ ||+++|+..++.+++++|++.|++++..|..|.||||+|+..|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999999999998777655 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHhhcCC
Q 012683          202 TCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN-REAVEILFPL  275 (458)
Q Consensus       202 ~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~  275 (458)
                      +++++|+++|++++.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+++ .+++++|...
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~  241 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC  241 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence            9999999999999988 789999999999999999999999999999999999999999988775 3444444433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.4e-39  Score=287.29  Aligned_cols=223  Identities=29%  Similarity=0.355  Sum_probs=209.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L   94 (458)
                      .++|+.|+..|+++.++++++.        .+...+..+.+|.||||+|+..|+.+++++|++. |.+++..+..|.|||
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~--------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L   77 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPL   77 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHh--------chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHH
Confidence            3569999999999999999987        3344667789999999999999999999999998 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683           95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV  173 (458)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~  173 (458)
                      |+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|.+++..+..+ ||||+|+..|+.+++++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998776655 99999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q 012683          174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADP  246 (458)
Q Consensus       174 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~  246 (458)
                      |+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|+++|+++
T Consensus       158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999999999999999999999999999999999999999987 77999999999999999999999987653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-40  Score=316.25  Aligned_cols=262  Identities=22%  Similarity=0.262  Sum_probs=229.4

Q ss_pred             CchhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC
Q 012683            3 PDASHALAVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLD   82 (458)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~   82 (458)
                      |.......-..+.++||.||..|+.++|++|++.    +.+     .+..|..|.||||+|+..|+.++|++|++. |.+
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~   78 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET----GVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASV-GEV   78 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHT----TCC-----TTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCC
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            3344444566789999999999999999999986    333     366788999999999999999999999998 775


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHHcC--CHHHH
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEH----GANPTI-----------------PSNLGATALHHSAGIG--NIELL  139 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~  139 (458)
                      ++.  ..|.||||+|+..|+.+++++|++.    |.+++.                 .+..|.||||+|+..|  +.+++
T Consensus        79 ~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v  156 (364)
T 3ljn_A           79 HSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMI  156 (364)
T ss_dssp             CCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHH
T ss_pred             ccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHH
Confidence            544  5799999999999999999999998    777665                 7788999999999999  99999


Q ss_pred             HHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683          140 TYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN-----PNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (458)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  213 (458)
                      ++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       157 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  236 (364)
T 3ljn_A          157 KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID  236 (364)
T ss_dssp             HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999998877655 999999999999999999999998     999999999999999999999999999999999


Q ss_pred             cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC------------CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN------------VTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       214 ~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ++.. ..|.||||+|+..|+.++|++|+++|++++            ..+..|+||+++|+..++.+.+..|+..+
T Consensus       237 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~  312 (364)
T 3ljn_A          237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK  312 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHH
Confidence            9988 789999999999999999999999986542            25668899999999999887777776543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.8e-39  Score=286.50  Aligned_cols=227  Identities=24%  Similarity=0.309  Sum_probs=211.7

Q ss_pred             hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 012683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHH  129 (458)
Q Consensus        51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~  129 (458)
                      ..|..|.|+||.|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            3467889999999999999999999998 99999999999999999999999999999999999887554 459999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHH
Q 012683          130 SAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS-LTCLDLL  207 (458)
Q Consensus       130 A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~L  207 (458)
                      |+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++ .+++++|
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            999999999999999999998776555 99999999999999999999999999999999999999997766 8999999


Q ss_pred             HHcCCCcccc-C-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          208 IQAGANANIV-A-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       208 l~~g~~~~~~-~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      ++.|++++.. . .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.+..
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            9999999988 3 799999999999999999999999999999999999999999999999999999988764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.6e-39  Score=294.97  Aligned_cols=253  Identities=22%  Similarity=0.276  Sum_probs=198.6

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhC----------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 012683           52 KDANKRGALHFAAREGKTDVCKYLLEEL----------KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSN  121 (458)
Q Consensus        52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~----------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  121 (458)
                      ....|.|+||+|+..|+.+.+..++...          ...++..+..|+||||+|+..|+.+++++|++.|++++..+.
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~   90 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA   90 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            3457999999999999987777755431          223566788999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683          122 LGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS  200 (458)
Q Consensus       122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  200 (458)
                      .|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH  169 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence            99999999999999999999999999998777655 99999999999999999999999987644 59999999999999


Q ss_pred             HHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          201 LTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       201 ~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      .+++++|++.|++++.. ..|.||||+|+..|+.++|++|+++|++++. +..|+||||+|+..|+.+++++|++++.+ 
T Consensus       170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-  247 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD-  247 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            99999999999999987 7899999999999999999999999999995 89999999999999999999999998764 


Q ss_pred             CCCCCcchhhHHHHHHhhccchhHHhhhhhcC
Q 012683          280 PSIPKWTVDGILEYMQSESGKQLEETRNLKEN  311 (458)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  311 (458)
                      .+..+..+.+++.++.    +..+.++.+++.
T Consensus       248 ~~~~d~~g~t~l~~A~----~~~~~~~~Ll~~  275 (285)
T 3d9h_A          248 TQAKNAEGKRPVELVP----PESPLAQLFLER  275 (285)
T ss_dssp             TTCCCTTSCCGGGGSC----TTSHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHhc----CccHHHHHHHHh
Confidence            4455555555555544    224555666655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-40  Score=313.79  Aligned_cols=297  Identities=18%  Similarity=0.213  Sum_probs=221.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHhhhcC------------CCc---hhhhhhhcccCCCcHHHHHHHcCCHHHHHHH
Q 012683           11 VRERVQQFLNAACTGNLDLLKKIAKQLDDQG------------KGL---SKTVADIKDANKRGALHFAAREGKTDVCKYL   75 (458)
Q Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~------------~~~---~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~l   75 (458)
                      ....-.+|+.++..|+.+.++.++++..+..            ..+   .-.+....+..|.||||+|+..|+ +++++|
T Consensus        34 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L  112 (373)
T 2fo1_E           34 ITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPI  112 (373)
T ss_dssp             ------------------------------------------------------------CCCHHHHHHHSSS-CCCSCC
T ss_pred             ccccccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHh
Confidence            3456667888888999888887775543211            000   012334568899999999999665 778777


Q ss_pred             HHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 012683           76 LEELKLDVDTQD-EDGETPLLHAARQGHTETAKYLF--------EHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKG  146 (458)
Q Consensus        76 l~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  146 (458)
                      +.   .+++..+ ..|.||||+|+..|+.+++++|+        +.|++++..|..|.||||+|+..|+.+++++|++.|
T Consensus       113 ~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  189 (373)
T 2fo1_E          113 TR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG  189 (373)
T ss_dssp             ST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC
Confidence            53   4778887 78999999999999998887776        899999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcC---CCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccc--
Q 012683          147 AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH---ANPNAETEDNITPLLSAVAAG---SLTCLDLLIQAGANANIV--  217 (458)
Q Consensus       147 ~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~g~~~~~~--  217 (458)
                      ++++..+..+ ||||+|+..|+.+++++|++++   .+++..+..|.||||+|+..+   +.+++++|+++|++++..  
T Consensus       190 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~  269 (373)
T 2fo1_E          190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  269 (373)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence            9998777655 9999999999999999999988   799999999999999999998   899999999999999862  


Q ss_pred             -------CCCCcHHHHHHhcCcHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhh
Q 012683          218 -------AGGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDG  289 (458)
Q Consensus       218 -------~~g~t~L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  289 (458)
                             ..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.++|++|++++... +..+..+.+
T Consensus       270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d~~g~t  348 (373)
T 2fo1_E          270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHT  348 (373)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCC
T ss_pred             cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCCCCCCC
Confidence                   46999999999999999999999875 999999999999999999999999999999987653 334444455


Q ss_pred             HHHHHHhhccchhHHhhhhhcCCCC
Q 012683          290 ILEYMQSESGKQLEETRNLKENNAP  314 (458)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~  314 (458)
                      ++.+  +......+.++.|++.++.
T Consensus       349 ~l~~--A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          349 ARQL--AQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHH--HHHTTCHHHHHHHHTTC--
T ss_pred             HHHH--HHHcCCHHHHHHHHhcCcc
Confidence            5544  4555778888888887754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.6e-39  Score=285.29  Aligned_cols=217  Identities=26%  Similarity=0.329  Sum_probs=197.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG--ANPTI-PSNLGATALHHSAG  132 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~  132 (458)
                      |+||||+|+..|+.+++++|++..+...+..+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999833344558999999999999999999999999999  55555 78899999999999


Q ss_pred             cCCHHHHHHHHhCC--CCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683          133 IGNIELLTYLLSKG--AEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ  209 (458)
Q Consensus       133 ~~~~~~~~~Ll~~~--~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  209 (458)
                      .|+.+++++|++.|  ++++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  7777666544 99999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCcccc-CCCCcHHHHHHhcCcHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          210 AG-ANANIV-AGGATPLHIAADIGSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       210 ~g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      .| ++++.. ..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||+|+|+..   +++++|+++
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99 999877 78999999999999999999999 89999999999999999999754   566666653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.2e-38  Score=296.71  Aligned_cols=252  Identities=26%  Similarity=0.314  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .+.++||.|+..|+.++|++|++.    +.+     .+..+..|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t  126 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQLLLQH----GAD-----VHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFT  126 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHT----TCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc----CCC-----CCccCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCC
Confidence            356799999999999999999986    333     356788999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH---------------------HHcCCHHHHHHHHhCCCCC-C
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS---------------------AGIGNIELLTYLLSKGAEV-D  150 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A---------------------~~~~~~~~~~~Ll~~~~~~-~  150 (458)
                      |||+|+..|+.+++++|+++|++++..+..|.||++.|                     +..++.+.+..++..+... .
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  206 (351)
T 3utm_A          127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK  206 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999998765                     4566777777777655433 3


Q ss_pred             CCCCCCcHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHH
Q 012683          151 SESDAGTPLIWAAGH---GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI  226 (458)
Q Consensus       151 ~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~  226 (458)
                      ....+.||||+|+..   +..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~  286 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR  286 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            334455999999999   5689999999999999999999999999999999999999999999999987 789999999


Q ss_pred             HHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          227 AADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       227 A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      |+..|+.++|++|+++|++++.+|..|+||+++|    +.+++++|.+....
T Consensus       287 A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            9999999999999999999999999999999998    78899999877653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.7e-38  Score=295.33  Aligned_cols=251  Identities=27%  Similarity=0.372  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~   93 (458)
                      +.++||.||..|+.++|+.|++.    |+.     .+..+..+.++++.++..+...++..++.. +.+++..+..|.||
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~----ga~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~  128 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRH----GAD-----PVLRKKNGATPFILAAIAGSVKLLKLFLSK-GADVNECDFYGFTA  128 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT----TCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCBCTTCCBH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHc----CCc-----hhhhccCCCchhHHHHhcccchhhHHhhhc-cchhhhhccCCCCH
Confidence            56899999999999999999987    433     356788999999999999999999999987 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC-cHHHH
Q 012683           94 LLHAARQGHTETAKYLFEHGANPTIP----------SNLGATALHHSAGIGNIELLTYLLS-KGAEVDSESDAG-TPLIW  161 (458)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~-t~l~~  161 (458)
                      ||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++ .|++++..+..+ |+++.
T Consensus       129 l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~  208 (337)
T 4g8k_A          129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH  208 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHH
Confidence            99999999999999999999987654          4568999999999999999999996 699998777655 99988


Q ss_pred             HHhCCC----HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683          162 AAGHGQ----QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       162 A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~i  235 (458)
                      ++..+.    ..++++|+++|++++.++..|.||||+|+..|+.++++.|++. |++++.. ..|.||||+|++.|+.++
T Consensus       209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            776543    4688999999999999999999999999999999999999985 8899988 789999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      |++|+++|++++.+     +|||+|+.+|+.++|++|+++|++.
T Consensus       289 v~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          289 AELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             HHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred             HHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            99999999998765     5999999999999999999999864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-38  Score=287.01  Aligned_cols=223  Identities=27%  Similarity=0.357  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHHcC-------------ChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHh
Q 012683           12 RERVQQFLNAACTG-------------NLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE   78 (458)
Q Consensus        12 ~~~~~~l~~A~~~g-------------~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~   78 (458)
                      ..+.++||.|+..|             +.+++++|++..        ..+....|..|.||||+|+..|+.+++++|++.
T Consensus         8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g--------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--------ASLHNQTDRTGETALHLAARYSRSDAAKRLLEA   79 (253)
T ss_dssp             ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc--------CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            46889999999988             899999999872        223345688999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-
Q 012683           79 LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-  156 (458)
Q Consensus        79 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-  156 (458)
                       |++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+ 
T Consensus        80 -g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  158 (253)
T 1yyh_A           80 -SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK  158 (253)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred             -CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence             99999999999999999999999999999999987 899999999999999999999999999999999998877655 


Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i  235 (458)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|++.|+.++
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988 779999999999999999


Q ss_pred             HHHHHHcC
Q 012683          236 IKCLLKAG  243 (458)
Q Consensus       236 v~~Ll~~g  243 (458)
                      +++|....
T Consensus       239 ~~~l~~~~  246 (253)
T 1yyh_A          239 VRLLDLEH  246 (253)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99998753

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-39  Score=297.62  Aligned_cols=245  Identities=29%  Similarity=0.332  Sum_probs=209.3

Q ss_pred             HHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 012683           20 NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAAR   99 (458)
Q Consensus        20 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~   99 (458)
                      .++..|..+.++.++.........+........+..|.||||.||..|+.++|++|++. |.+++..+..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHH
Confidence            46777888888888876444333333333334456788999999999999999999998 99999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhc-
Q 012683          100 QGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH-  177 (458)
Q Consensus       100 ~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~-  177 (458)
                      .|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..++.++++.++.. 
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~  162 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ  162 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999998777655 999999999999999877642 


Q ss_pred             CCC--------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhc
Q 012683          178 HAN--------------------------PNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADI  230 (458)
Q Consensus       178 ~~~--------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~  230 (458)
                      +.+                          ....+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~  242 (299)
T 1s70_B          163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW  242 (299)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc
Confidence            332                          2234667889999999999999999999999998877 6789999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683          231 GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN  265 (458)
Q Consensus       231 ~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  265 (458)
                      |+.+++++|+++|++++.+|..|+||+|+|+....
T Consensus       243 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  277 (299)
T 1s70_B          243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL  277 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGG
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999865433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.3e-38  Score=280.38  Aligned_cols=212  Identities=29%  Similarity=0.380  Sum_probs=195.0

Q ss_pred             CCHHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683           67 GKTDVCKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (458)
Q Consensus        67 g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (458)
                      |+.+++++|++. |.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            677888899987 8887765 78999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCc
Q 012683          146 GA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGAT  222 (458)
Q Consensus       146 ~~-~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t  222 (458)
                      +. +++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  160 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET  160 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence            86 666655444 9999999999999999999999999999999999999999999999999999999999988 77999


Q ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          223 PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       223 ~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      |||+|+..|+.+++++|+++|++++.+|..|+||+|+|+.+++.+++++|++++...
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            999999999999999999999999999999999999999999999999999988753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.2e-38  Score=283.92  Aligned_cols=226  Identities=25%  Similarity=0.339  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .+.++||.||..|+.++|++|++.+...+..+     +..+..|.||||+|+..|+.+++++|++. |.+++..+..|.|
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t   81 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQT   81 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-----CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCC
Confidence            35678999999999999999999766545443     56788999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCcHHHHHHhCC
Q 012683           93 PLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAGHG  166 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~t~l~~A~~~~  166 (458)
                      |||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+..|
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            9999999999999999999987    888899999999999999999999999999999998776 3 449999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCC
Q 012683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGA  244 (458)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~  244 (458)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++++.|++.++
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999999999999999999999999999999999999999999999999987 779999999999999999999988654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.5e-39  Score=293.98  Aligned_cols=237  Identities=17%  Similarity=0.142  Sum_probs=210.9

Q ss_pred             HHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 012683           21 AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQ  100 (458)
Q Consensus        21 A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~  100 (458)
                      ++...+...+..++...          ..+..|.+|.||||+|+..|+.+++++|++. |++++..  +|.||||+|+..
T Consensus         6 ~i~~~~~~~v~~lL~~~----------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~   72 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK----------DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATL   72 (285)
T ss_dssp             TGGGCCHHHHHHHHHST----------TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTS
T ss_pred             HHHhcCHHHHHHHHHhC----------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHc
Confidence            45677777777777541          2467889999999999999999999999998 9888887  489999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHHHHhCCCHHHHHHHHhcC
Q 012683          101 GHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQEAVKVLLEHH  178 (458)
Q Consensus       101 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~A~~~~~~~~~~~Ll~~~  178 (458)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+  ||||+|+..|+.+++++|+++|
T Consensus        73 g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           73 EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             SSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999988766544  9999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH-HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683          179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP-LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP  256 (458)
Q Consensus       179 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~  256 (458)
                      .+.... ..|.||||+|+..|+.+++++|+++|++++.. ..|.|| ||+|+..|+.+++++|+++|++++.+|.     
T Consensus       153 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-----  226 (285)
T 3kea_A          153 PSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-----  226 (285)
T ss_dssp             CTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-----
T ss_pred             Cccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-----
Confidence            876332 28899999999999999999999999999988 678897 9999999999999999999999999984     


Q ss_pred             HHHHHHcCCHHHHHhhcCCCCC
Q 012683          257 IQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       257 l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                        .|+..|+.+++++|++++..
T Consensus       227 --~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          227 --ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             --GGGTTTCHHHHHHHHHHHHH
T ss_pred             --hhhhcCCHHHHHHHHHcCCC
Confidence              56789999999999988754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.4e-39  Score=290.41  Aligned_cols=232  Identities=24%  Similarity=0.357  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHH-HHHHHHHhCCCCCCCCCCCCC
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTD-VCKYLLEELKLDVDTQDEDGE   91 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-~v~~ll~~~~~~~~~~~~~g~   91 (458)
                      ...++|+.||..|++++|++|++...+.... .....+..+..|.||||.|+..++.. ++++|++. |++++..|.+|.
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~~G~   87 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLED-AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGS   87 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C-CCCTTCCCTTSC
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCccccc-ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCCCCC
Confidence            4578999999999999999999763221111 12234556788999999999988865 78888887 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~  170 (458)
                      ||||+|+..|+.++|++|++.|++++..+..|.||++.|+..++.+++++|++.|++++..+..+ ||||+|+..|+.++
T Consensus        88 TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~  167 (269)
T 4b93_B           88 SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL  167 (269)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGG
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999877665 99999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc-HHHHHHHHHcCCCC
Q 012683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGS-TEIIKCLLKAGADP  246 (458)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~-~~iv~~Ll~~g~~~  246 (458)
                      +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|+||||+|+++++ .+++++|...+..+
T Consensus       168 v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          168 VALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             HHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence            99999999999999999999999999999999999999999999988 789999999998886 35555555555443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3e-37  Score=283.32  Aligned_cols=233  Identities=23%  Similarity=0.267  Sum_probs=182.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cH
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGAN---PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TP  158 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~  158 (458)
                      ++.+|..|.||||+|+..|+.++|++|+++|++   ++..+..|.||||+|+..|+.+++++|+++|++++..+..+ ||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            467889999999999999999999999999988   78889999999999999999999999999999998777555 99


Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCC-------------CCCCCcHHHHHHHcCCH-HHHHHHHHcCCCcccc-CCCCcH
Q 012683          159 LIWAAGHGQQEAVKVLLEHHANPNAE-------------TEDNITPLLSAVAAGSL-TCLDLLIQAGANANIV-AGGATP  223 (458)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~~t~l~~a~~~~~~-~~~~~Ll~~g~~~~~~-~~g~t~  223 (458)
                      ||+|+..|+.+++++|+++|.+....             ...+.++++.+...+.. .....+...+.+++.. ..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            99999999999999999988764322             22345566665554433 3334444556677766 679999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchh
Q 012683          224 LHIAADIGSTEIIKCLLKAGADPNVTDED-GQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL  302 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (458)
                      ||+|+..|+.++|++|+++|++++.++.. |+||||+|+..|+.+++++|++++.. ++..+..+.+++.+  +......
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~--A~~~~~~  238 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGS--ALLRPNP  238 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH--HHTSSCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHH--HHHcCCc
Confidence            99999999999999999999999999865 99999999999999999999999764 34444455555544  4555778


Q ss_pred             HHhhhhhcCCCCCCCC
Q 012683          303 EETRNLKENNAPKDKA  318 (458)
Q Consensus       303 ~~~~~l~~~~~~~~~~  318 (458)
                      +.++.|++.++.+...
T Consensus       239 ~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          239 ILARLLRAHGAPEPED  254 (282)
T ss_dssp             HHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHcCCCcCcC
Confidence            9999999999987644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3e-36  Score=269.34  Aligned_cols=222  Identities=26%  Similarity=0.364  Sum_probs=200.1

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHH
Q 012683           81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPL  159 (458)
Q Consensus        81 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l  159 (458)
                      .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ |||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            4677889999999999999999999999999999999999999999999999999999999999999998776555 999


Q ss_pred             HHHHhCCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHH
Q 012683          160 IWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK  237 (458)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~  237 (458)
                      |+|+..|+.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.++++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999998 889999999999999999999999999999999999987 77999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683          238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEET  305 (458)
Q Consensus       238 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (458)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|++++.+. +..+..+.+++.+  +.........
T Consensus       162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~--A~~~~~~~~~  226 (237)
T 3b7b_A          162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQC--ASLNSQVWSA  226 (237)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH--SCTTCHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC-CccCCCCCCHHHH--HHHHHHHHHH
Confidence            999999999999999999999999999999999999987643 4444455555544  4444444333

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.5e-37  Score=272.04  Aligned_cols=214  Identities=28%  Similarity=0.345  Sum_probs=195.1

Q ss_pred             CChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           25 GNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTE  104 (458)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~  104 (458)
                      |+.+++++|++.    +..    +....|.+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+
T Consensus         2 g~~~~i~~Ll~~----g~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~   72 (223)
T 2f8y_A            2 DAPAVISDFIYQ----GAS----LHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQG   72 (223)
T ss_dssp             ---CCEETTEET----TCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHHHc----CCC----cccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            566777777765    222    2344578999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCC
Q 012683          105 TAKYLFEHGA-NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPN  182 (458)
Q Consensus       105 ~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~  182 (458)
                      ++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++
T Consensus        73 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  152 (223)
T 2f8y_A           73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD  152 (223)
T ss_dssp             HHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999987 889999999999999999999999999999999998877655 99999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683          183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (458)
Q Consensus       183 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  247 (458)
                      ..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|+...
T Consensus       153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999987 779999999999999999999999998654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2e-36  Score=268.75  Aligned_cols=215  Identities=24%  Similarity=0.345  Sum_probs=196.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCC--CCCCC-CCCCCC
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK--LDVDT-QDEDGE   91 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~-~~~~g~   91 (458)
                      .++||.||..|+.++|++|++..        +......+..|.||||+|+..|+.+++++|++. +  .+++. .+..|.
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~g~   73 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSK--------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGW   73 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHC--------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCCCTTSC
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcC--------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccCCCCCC
Confidence            46899999999999999999872        334455788999999999999999999999998 7  56666 788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH
Q 012683           92 TPLLHAARQGHTETAKYLFEHG--ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ  168 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~  168 (458)
                      ||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  153 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL  153 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999  8889999999999999999999999999999999998877655 999999999999


Q ss_pred             HHHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          169 EAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       169 ~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                      +++++|++.| .+++..+..|.||||+|+..|+.+++++|+ +.|++++.. ..|.||||+|+..   +++++|++
T Consensus       154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            9999999999 999999999999999999999999999999 999999988 7899999999765   56677765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.3e-37  Score=281.18  Aligned_cols=236  Identities=19%  Similarity=0.187  Sum_probs=205.5

Q ss_pred             cCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 012683           66 EGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK  145 (458)
Q Consensus        66 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  145 (458)
                      ..+...+..++.. + +++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|++.
T Consensus         9 ~~~~~~v~~lL~~-~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A            9 TWKSKQLKSFLSS-K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             GCCHHHHHHHHHS-T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             hcCHHHHHHHHHh-C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHC
Confidence            3444444455544 2 688999999999999999999999999999999998874  99999999999999999999999


Q ss_pred             CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcH
Q 012683          146 GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATP  223 (458)
Q Consensus       146 ~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~  223 (458)
                      |++++..+..+ ||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|++......|.||
T Consensus        85 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~  164 (285)
T 3kea_A           85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC  164 (285)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccH
Confidence            99998777655 99999999999999999999999999999999 79999999999999999999999988544579999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchh
Q 012683          224 LHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP-IQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQL  302 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (458)
                      ||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|++++........          .+......
T Consensus       165 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~----------~a~~~~~~  234 (285)
T 3kea_A          165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL----------ENVLLDDA  234 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG----------GGGTTTCH
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh----------hhhhcCCH
Confidence            999999999999999999999999999999998 9999999999999999999875433321          11234566


Q ss_pred             HHhhhhhcCCCCC
Q 012683          303 EETRNLKENNAPK  315 (458)
Q Consensus       303 ~~~~~l~~~~~~~  315 (458)
                      +.++.+++.+...
T Consensus       235 ~iv~~Ll~~g~~~  247 (285)
T 3kea_A          235 EIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC
Confidence            6777777766544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.5e-36  Score=267.50  Aligned_cols=225  Identities=28%  Similarity=0.439  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCc
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGET   92 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t   92 (458)
                      +.++|+.|+..|+.+++++|++.    +.+     .+..+..|.||||+|+..|+.+++++|++. +.+++... ..|.|
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEA----GYD-----VRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNST   78 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHT----TCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBC
T ss_pred             cchHHHHHHHcCChHHHHHHHHc----CCC-----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCC
Confidence            34569999999999999999986    222     355678899999999999999999999998 77776554 55999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC-HHH
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ-QEA  170 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~-~~~  170 (458)
                      |||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.|++++..+..+ ||||+|+..++ .++
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHH
Confidence            9999999999999999999999999999999999999999999999999999999998777655 99999996665 899


Q ss_pred             HHHHHhcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCC
Q 012683          171 VKVLLEHHANPNAETE-DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNV  248 (458)
Q Consensus       171 ~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~  248 (458)
                      +++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|.+...
T Consensus       159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            9999999999999987 8999999999999999999999999999988 7899999999999999999999999876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.2e-37  Score=275.49  Aligned_cols=201  Identities=25%  Similarity=0.301  Sum_probs=136.9

Q ss_pred             hcccCCCcHHHHHHHcCCHHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683           51 IKDANKRGALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL  127 (458)
Q Consensus        51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  127 (458)
                      ..|.+|.||||+|+..|+.+++++|++...   .+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            457789999999999999999999987632   36888999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683          128 HHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (458)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  207 (458)
                      |+|+..|+.+++++|++.+.+....                          ..++..+..|.||||+|+..|+.+++++|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~--------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  136 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH--------------------------SILKATNYNGHTCLHLASIHGYLGIVELL  136 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS--------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH--------------------------HHhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999988653211                          01123344455555555555555555555


Q ss_pred             HHcCCCcccc-C-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          208 IQAGANANIV-A-GGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       208 l~~g~~~~~~-~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                      +++|++++.. . .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.+++++|++++.
T Consensus       137 l~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            5555555544 2 45555555555555555555555555555555555555555555555555555555554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4e-34  Score=248.78  Aligned_cols=191  Identities=27%  Similarity=0.413  Sum_probs=141.6

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      ..+.||||.|+..|+.++++.|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45778888888888888888888876668888888888888888888888888888888888888888888888888777


Q ss_pred             CCHHHHHHHHh-CCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-
Q 012683          134 GNIELLTYLLS-KGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG-  211 (458)
Q Consensus       134 ~~~~~~~~Ll~-~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g-  211 (458)
                      |+.+++++|++ .+.+                                ++..+..|.||||+|+..|+.+++++|+++| 
T Consensus        83 ~~~~~~~~Ll~~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           83 GRTEILAYMLKHATPD--------------------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             TCHHHHHHHHHHSCCC--------------------------------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHhccCcc--------------------------------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            77777777773 3333                                4444555555555555555555566666555 


Q ss_pred             CCcccc-CCCCcHHHHHHhcCc-----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          212 ANANIV-AGGATPLHIAADIGS-----TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       212 ~~~~~~-~~g~t~L~~A~~~~~-----~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ++++.. ..|.||||+|+..++     .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            555554 446666666666665     77777888777777777778888888888888888888877654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.8e-34  Score=247.72  Aligned_cols=188  Identities=23%  Similarity=0.283  Sum_probs=144.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 012683          122 LGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG  199 (458)
Q Consensus       122 ~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  199 (458)
                      .+.||||.|+..|+.++++.|+..+. +++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            45556666666666666666655544 454444333 6666677777777777777777788888888999999999999


Q ss_pred             CHHHHHHHH-HcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCC-----HHHHHh
Q 012683          200 SLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG-ADPNVTDEDGQKPIQVAAARGN-----REAVEI  271 (458)
Q Consensus       200 ~~~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~-----~~~v~~  271 (458)
                      +.+++++|+ ..+.+++.. ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 556688777 67999999999999999999999999 9999999999999999999998     999999


Q ss_pred             hcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCC
Q 012683          272 LFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENN  312 (458)
Q Consensus       272 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  312 (458)
                      |++++... +..+....+++.++.  .....+.++.+++.|
T Consensus       164 Ll~~ga~~-~~~~~~g~t~l~~A~--~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQ-SIKDNSGRTAMDYAN--QKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCT-TCCCTTSCCHHHHHH--HHTCHHHHHHHHTCC
T ss_pred             HHHCCCCC-CccCCCCCCHHHHHH--HcCCHhHHHHHHhcC
Confidence            99997543 444455555555544  446677777777653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-35  Score=265.58  Aligned_cols=196  Identities=21%  Similarity=0.226  Sum_probs=136.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 012683           86 QDEDGETPLLHAARQGHTETAKYLFEHGA----NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIW  161 (458)
Q Consensus        86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~  161 (458)
                      .|..|.||||+|+..|+.+++++|++.+.    +++..+..|.|||                                |+
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L--------------------------------~~   51 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL--------------------------------HL   51 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHH--------------------------------HH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHH--------------------------------HH
Confidence            44556666666666666666665555443    3444444455555                                55


Q ss_pred             HHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc------ccc-CCCCcHHHHHHhcCcHH
Q 012683          162 AAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA------NIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       162 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~------~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++.      +.. ..|.||||+|+..|+.+
T Consensus        52 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  131 (236)
T 1ikn_D           52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG  131 (236)
T ss_dssp             HHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHH
Confidence            55555555555555555566666666777777777777777777777776542      333 56999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCC
Q 012683          235 IIKCLLKAGADPNVTDE-DGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNA  313 (458)
Q Consensus       235 iv~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (458)
                      +|++|+++|++++.++. .|+||||+|+..|+.+++++|++++... +..+..+  .+++..+......+.++.+++.++
T Consensus       132 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g--~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQG--YSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTTC--CCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCCC--CCHHHHHHccCchHHHHHHHHcch
Confidence            99999999999999998 9999999999999999999999997643 3333333  444555566678899999999988


Q ss_pred             CCC
Q 012683          314 PKD  316 (458)
Q Consensus       314 ~~~  316 (458)
                      ...
T Consensus       209 ~~~  211 (236)
T 1ikn_D          209 ENL  211 (236)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-34  Score=264.23  Aligned_cols=219  Identities=25%  Similarity=0.366  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      .+.++|+.||..|++++|++|++.    +.+     .+..+.+|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~----g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t  108 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLER----GAD-----INYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWI  108 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH----CCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHc----CCC-----CcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCc
Confidence            467889999999999999999987    333     356788999999999999999999999997 9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCC---------------------
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK-GAEVD---------------------  150 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~---------------------  150 (458)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++++.. +.+++                     
T Consensus       109 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (299)
T 1s70_B          109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999998877653 33221                     


Q ss_pred             ------CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH
Q 012683          151 ------SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP  223 (458)
Q Consensus       151 ------~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~  223 (458)
                            ....+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.. ..|.||
T Consensus       189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence                  2234559999999999999999999999999999999999999999999999999999999999988 789999


Q ss_pred             HHHHHhcCcHHHHHHHHHc
Q 012683          224 LHIAADIGSTEIIKCLLKA  242 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~~  242 (458)
                      ||+|++. ..++++.|++.
T Consensus       269 l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          269 FDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TTSCCSG-GGHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHH
Confidence            9999775 45555566553

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.1e-34  Score=264.89  Aligned_cols=216  Identities=22%  Similarity=0.283  Sum_probs=140.3

Q ss_pred             hhcccCCCcHHHHHHHcCCHHHHHHHHHh---CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCC--
Q 012683           50 DIKDANKRGALHFAAREGKTDVCKYLLEE---LKLDVD----TQDEDGETPLLHAARQ---GHTETAKYLFEHGANPT--  117 (458)
Q Consensus        50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~---~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~--  117 (458)
                      +..|..|.||||+|+..|+.++|+.|++.   .+.+++    ..+..|.||||+|+..   |+.+++++|++.|+++.  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            45678899999999999999999988873   366665    4578999999999987   99999999999876432  


Q ss_pred             ---------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCC
Q 012683          118 ---------IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDN  188 (458)
Q Consensus       118 ---------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  188 (458)
                               ..|..|.||||+|+..|+.+++++|++.|++++..+..+.                  ....+....+..|
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------------------~~~~~~~~~~~~g  148 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF------------------FKKTKGRPGFYFG  148 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG------------------GSSCSSSCCCCSC
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc------------------cccccccccccCC
Confidence                     2455777888888877777777777777777766554210                  0000112223356


Q ss_pred             CcHHHHHHHcCCHHHHHHHHH---cCCCcccc-CCCCcHHHHHHhcCc---------HHHHHHHHHcCCCCC-------C
Q 012683          189 ITPLLSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAADIGS---------TEIIKCLLKAGADPN-------V  248 (458)
Q Consensus       189 ~t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~-~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~~-------~  248 (458)
                      .||||+|+..|+.+++++|++   .|++++.. ..|.||||+|+..|+         .+++++|+++|++++       .
T Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~  228 (273)
T 2pnn_A          149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI  228 (273)
T ss_dssp             BSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccc
Confidence            666666666666666666666   56666655 456666666666555         566666666666654       3


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCC
Q 012683          249 TDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIP  283 (458)
Q Consensus       249 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  283 (458)
                      +|..|+||||+|+..|+.+++++|++++..++..+
T Consensus       229 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          229 TNRKGLTPLALAASSGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred             cCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence            66666666666666666666666666666554443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.6e-34  Score=258.28  Aligned_cols=204  Identities=20%  Similarity=0.240  Sum_probs=156.9

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHhCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC----
Q 012683           55 NKRGALHFAAREGKTD----VCKYLLEELKLDVDT----QDEDGETPLLHAARQ---GHTETAKYLFEHGANPTIP----  119 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~----~v~~ll~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~----  119 (458)
                      .|.||||.|+..|+.+    ++++|++. |.+++.    .+..|.||||+|+..   |+.+++++|++.|++++..    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            3789999999999997    55666666 888888    788999999999998   9999999999988776533    


Q ss_pred             -------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683          120 -------SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPL  192 (458)
Q Consensus       120 -------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  192 (458)
                             |..|.||||+|+..|+.+++++|++.|++++..+....                   ...+.+..+..|.|||
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-------------------~~~~~~~~~~~g~tpL  140 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF-------------------FQKHQGTCFYFGELPL  140 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG-------------------GSCCSSSCCCSCSSHH
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc-------------------ccccccccccCCCCHH
Confidence                   35677777777777777777777777777765554311                   0112223334478888


Q ss_pred             HHHHHcCCHHHHHHHHH---cCCCcccc-CCCCcHHHHHHh--cCcHH-------HHHHHHHcCCCC-------CCCCCC
Q 012683          193 LSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAAD--IGSTE-------IIKCLLKAGADP-------NVTDED  252 (458)
Q Consensus       193 ~~a~~~~~~~~~~~Ll~---~g~~~~~~-~~g~t~L~~A~~--~~~~~-------iv~~Ll~~g~~~-------~~~~~~  252 (458)
                      |+|+..|+.+++++|++   .|++++.. ..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..
T Consensus       141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~  220 (256)
T 2etb_A          141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ  220 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC
Confidence            88888888888888888   78887776 668888888887  67777       888888888888       888888


Q ss_pred             CCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          253 GQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       253 g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      |+||||+|+..|+.+++++|++++..
T Consensus       221 g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          221 GLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            88899888888888888888887654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=7e-35  Score=272.90  Aligned_cols=231  Identities=23%  Similarity=0.272  Sum_probs=176.4

Q ss_pred             CChHHHHHHHHHhhhcCCCchhhhhh--------hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCC-CCCCCCcHHH
Q 012683           25 GNLDLLKKIAKQLDDQGKGLSKTVAD--------IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDT-QDEDGETPLL   95 (458)
Q Consensus        25 g~~~~v~~ll~~~~~~~~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~   95 (458)
                      |+.++|+.|++...+.+.........        .......+.+|.|+..+..+++++|++. |++++. .+..|.||||
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~-g~dvn~~~d~~g~TpLh  136 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHGNTPLH  136 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTCCCHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc-CCCcccccCCCCCcHHH
Confidence            99999999998864422210000000        0111222346888888888999999987 999999 8999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHhCC-CCCCCCCCCC-cHHHHHHh----CC
Q 012683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN---IELLTYLLSKG-AEVDSESDAG-TPLIWAAG----HG  166 (458)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~~-t~l~~A~~----~~  166 (458)
                      +|+..|+.++|++|+++|++++..+..|.||||+|+..|+   .++++.|++.+ .+++..+..+ ||||+|+.    .|
T Consensus       137 ~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g  216 (327)
T 1sw6_A          137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG  216 (327)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc
Confidence            9999999999999999999999999999999999999998   67777777775 5566655544 99999999    99


Q ss_pred             CHHHHHHHHhc--------------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHH
Q 012683          167 QQEAVKVLLEH--------------------HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH  225 (458)
Q Consensus       167 ~~~~~~~Ll~~--------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~  225 (458)
                      +.+++++|++.                    |++++..+..|.||||.|+.      +++|++++  ++.. ..|+||||
T Consensus       217 ~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~~d~~G~TpLh  288 (327)
T 1sw6_A          217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM--LNAQDSNGDTCLN  288 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT--TTCCCTTSCCHHH
T ss_pred             cHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC--CCCCCCCCCCHHH
Confidence            99999999987                    89999999999999999985      89999984  5555 67999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683          226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARG  264 (458)
Q Consensus       226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  264 (458)
                      +|+..|+.++|++|+++|++++.+|..|+||||+|+.+|
T Consensus       289 ~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            999999999999999999999999999999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.4e-34  Score=260.17  Aligned_cols=203  Identities=21%  Similarity=0.224  Sum_probs=154.1

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCc
Q 012683           89 DGETPLLHAARQGHTE----TAKYLFEHGANPTI----PSNLGATALHHSAGI---GNIELLTYLLSKGAEVDSESDAGT  157 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~t  157 (458)
                      .|.||||.|+..|+.+    ++++|++.|++++.    .+..|.||||+|+..   |+.+++++|++.|++++....   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence            4789999999999986    56777778999887    788999999999988   889999999988776543220   


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC--------------CCcH
Q 012683          158 PLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG--------------GATP  223 (458)
Q Consensus       158 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------g~t~  223 (458)
                                      ++.  ......+..|.||||+|+..|+.+++++|+++|++++..+.              |.||
T Consensus        78 ----------------~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           78 ----------------LVN--AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP  139 (256)
T ss_dssp             ----------------GGG--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred             ----------------hcc--cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Confidence                            000  11222344566666666666666666666666666665522              9999


Q ss_pred             HHHHHhcCcHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHhhcCCCCCCC------CCCCc
Q 012683          224 LHIAADIGSTEIIKCLLK---AGADPNVTDEDGQKPIQVAAA--RGNRE-------AVEILFPLTSEDP------SIPKW  285 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~---~g~~~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~~------~~~~~  285 (458)
                      ||+|+..|+.++|++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|++++....      +..+.
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~  219 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH  219 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCC
Confidence            999999999999999999   999999999999999999999  88988       9999999887542      34444


Q ss_pred             chhhHHHHHHhhccchhHHhhhhhcCCCC
Q 012683          286 TVDGILEYMQSESGKQLEETRNLKENNAP  314 (458)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (458)
                      .+.+++.+  +......+.++.+++.+..
T Consensus       220 ~g~tpL~~--A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          220 QGLTPLKL--AAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             TSCCHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHH--HHHhCCHHHHHHHHhCCCC
Confidence            45555544  4555678888888887654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.8e-34  Score=262.28  Aligned_cols=211  Identities=18%  Similarity=0.189  Sum_probs=158.5

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCC
Q 012683           80 KLDVDTQDEDGETPLLHAARQGHTETAKYLFE----HGANPT----IPSNLGATALHHSAGI---GNIELLTYLLSKGAE  148 (458)
Q Consensus        80 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~  148 (458)
                      ++..+..+..|.||||.|+..|+.++|+.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|++.|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            34456678889999999999999998888876    455554    3577889999999976   888899988887754


Q ss_pred             CCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccC----------
Q 012683          149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA----------  218 (458)
Q Consensus       149 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~----------  218 (458)
                      ...                   ++.++..  .....+..|.||||+|+..|+.+++++|+++|++++...          
T Consensus        83 ~~~-------------------~~~~i~~--~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  141 (273)
T 2pnn_A           83 TDS-------------------LKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKG  141 (273)
T ss_dssp             TTC-------------------HHHHHTC--CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSS
T ss_pred             ccc-------------------hhHHhhc--ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccc
Confidence            321                   1122221  223345677788888888888888888888877777663          


Q ss_pred             -----CCCcHHHHHHhcCcHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHhhcCCCCCCCC
Q 012683          219 -----GGATPLHIAADIGSTEIIKCLLK---AGADPNVTDEDGQKPIQVAAARGN---------REAVEILFPLTSEDPS  281 (458)
Q Consensus       219 -----~g~t~L~~A~~~~~~~iv~~Ll~---~g~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~~~  281 (458)
                           .|.||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..|+         .+++++|++++.....
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence                 59999999999999999999999   999999999999999999999998         8999999998875432


Q ss_pred             ------CCCcchhhHHHHHHhhccchhHHhhhhhcCCC
Q 012683          282 ------IPKWTVDGILEYMQSESGKQLEETRNLKENNA  313 (458)
Q Consensus       282 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (458)
                            ..+..+.+++  ..+......+.++.|++.++
T Consensus       222 ~~~~~~~~d~~g~TpL--~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          222 TLKLEEITNRKGLTPL--ALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             TCCGGGCCCTTSCCHH--HHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccCCCCCCHH--HHHHHhChHHHHHHHHHCCC
Confidence                  3444454554  44555577999999999988

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=9e-33  Score=231.79  Aligned_cols=157  Identities=39%  Similarity=0.553  Sum_probs=89.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  137 (458)
                      ++|+.||..|+.++|+.|++. |++++.+|..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            356666666666666666665 6666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683          138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN  215 (458)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  215 (458)
                      ++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..|.+|+|||++|+..|+.+++++|+++|++++
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            6666655555555444333 55555555555555555555555555555555555555555555555555554444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.2e-32  Score=231.04  Aligned_cols=158  Identities=38%  Similarity=0.566  Sum_probs=146.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~  170 (458)
                      ++|+.|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++..+..+ ||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            57999999999999999999999999999999999999999999999999999999998877665 99999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCC
Q 012683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVT  249 (458)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~  249 (458)
                      +++|+++|++++.++.+|+||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++..
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999999999999999999999999999988 78999999999999999999999999998754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=3.7e-33  Score=252.93  Aligned_cols=207  Identities=21%  Similarity=0.206  Sum_probs=146.7

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC------
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLE----ELKLDVDTQD----EDGETPLLHAA---RQGHTETAKYLFEHGAN------  115 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~------  115 (458)
                      +..+.|+||.|+..|+.++++.|++    . +.+++..+    ..|.||||+|+   ..|+.+++++|++.|++      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            3567889999999999885555544    5 77777655    66889999888   66888999999887744      


Q ss_pred             -----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCc
Q 012683          116 -----PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNIT  190 (458)
Q Consensus       116 -----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t  190 (458)
                           ++..|..|.||||+|+..|+.+++++|++.|++++..+.+..                  -...+....+..|.|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------------------~~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF------------------FQPKDEGGYFYFGEL  142 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC------------------CSSSCCCCSCCSCSS
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc------------------cCcccccccccCCCC
Confidence                 233344566666666666666666666666666655442100                  000111222256777


Q ss_pred             HHHHHHHcCCHHHHHHHHH---cCCCcccc-CCCCcHHHHHHhcCc---------HHHHHHHHHcCCCC-------CCCC
Q 012683          191 PLLSAVAAGSLTCLDLLIQ---AGANANIV-AGGATPLHIAADIGS---------TEIIKCLLKAGADP-------NVTD  250 (458)
Q Consensus       191 ~l~~a~~~~~~~~~~~Ll~---~g~~~~~~-~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~-------~~~~  250 (458)
                      |||+|+..|+.+++++|++   .|++++.. ..|.||||+|+..|+         .+++++|+++|+++       +.+|
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            8888877777888888887   77777766 567888888887766         68888888888877       6688


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          251 EDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      ..|+||||+|+..|+.+++++|++++..
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8888888888888888888888877654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=2e-32  Score=248.02  Aligned_cols=173  Identities=22%  Similarity=0.219  Sum_probs=118.9

Q ss_pred             ccCCCcHHHHHH---HcCCHHHHHHHHHhCC-----------CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 012683           53 DANKRGALHFAA---REGKTDVCKYLLEELK-----------LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI  118 (458)
Q Consensus        53 ~~~g~t~L~~A~---~~g~~~~v~~ll~~~~-----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  118 (458)
                      +..|.||||+|+   ..|+.+++++|++. |           ..++..|..|.||||+|+..|+.++|++|+++|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc
Confidence            366999999999   77999999999997 4           34555666899999999999999999999999999998


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCcHHHHHHhCCCHHHHHHHHh---cCCCCCCCCCCCCcHHHH
Q 012683          119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSE-SDAGTPLIWAAGHGQQEAVKVLLE---HHANPNAETEDNITPLLS  194 (458)
Q Consensus       119 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~t~l~~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~  194 (458)
                      .+..+..                   ...+.... ..+.||||+|+..|+.+++++|++   +|++++..+..|+||||+
T Consensus       122 ~~~~~~~-------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~  182 (260)
T 3jxi_A          122 QARGRFF-------------------QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA  182 (260)
T ss_dssp             CCEECCC-------------------SSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             ccccccc-------------------CcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHH
Confidence            8732100                   00001111 122355555555555555555655   566666666666666666


Q ss_pred             HHHcCC---------HHHHHHHHHcCCCc-------ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683          195 AVAAGS---------LTCLDLLIQAGANA-------NIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (458)
Q Consensus       195 a~~~~~---------~~~~~~Ll~~g~~~-------~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  245 (458)
                      |+..++         .+++++|+++|+++       +.. ..|.||||+|+..|+.++|++|+++|.+
T Consensus       183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            666555         56666777776666       233 5577777777777777777777776654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=1e-33  Score=264.98  Aligned_cols=253  Identities=17%  Similarity=0.124  Sum_probs=192.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC---------
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQ---------   86 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~---------   86 (458)
                      +....++.....++|++|++.    |+.+     +..+..|.|+++     |+.++|+.|+++ |++++..         
T Consensus        21 ~~~~~~~~~~~~dlv~~ll~~----ga~i-----~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~   85 (327)
T 1sw6_A           21 DRTAGPIITFTHDLTSDFLSS----PLKI-----MKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNND   85 (327)
T ss_dssp             ----CCEEECCTTCCCSTTTS----SCCC-----EECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------
T ss_pred             cccccchhhhcCchHHHHhhC----Cccc-----ccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcc
Confidence            334444445566667777765    4443     567788999988     999999999998 7665541         


Q ss_pred             --------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-
Q 012683           87 --------DEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-  156 (458)
Q Consensus        87 --------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-  156 (458)
                              .....+.+|+|+..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~  165 (327)
T 1sw6_A           86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE  165 (327)
T ss_dssp             ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred             cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                    11122345888888889999999999999999 89999999999999999999999999999999877655 


Q ss_pred             cHHHHHHhCCC---HHHHHHHHhcC-CCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHHc------------------
Q 012683          157 TPLIWAAGHGQ---QEAVKVLLEHH-ANPNAETEDNITPLLSAVA----AGSLTCLDLLIQA------------------  210 (458)
Q Consensus       157 t~l~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~------------------  210 (458)
                      ||||+|+..|+   .++++.|++.+ .+++..+..|+||||+|+.    .|+.+++++|++.                  
T Consensus       166 TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~  245 (327)
T 1sw6_A          166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN  245 (327)
T ss_dssp             CHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred             CHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence            99999999998   67777887776 6788899999999999999    8999999999987                  


Q ss_pred             --CCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcch
Q 012683          211 --GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTV  287 (458)
Q Consensus       211 --g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  287 (458)
                        |++++.. ..|.||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.++|++|++++.+ .+..+..+
T Consensus       246 ~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G  316 (327)
T 1sw6_A          246 EKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSG  316 (327)
T ss_dssp             --------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred             cccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCC
Confidence              7888877 779999999996      9999998  6899999999999999999999999999999765 34444445


Q ss_pred             hhHHH
Q 012683          288 DGILE  292 (458)
Q Consensus       288 ~~~~~  292 (458)
                      .+++.
T Consensus       317 ~TpL~  321 (327)
T 1sw6_A          317 LRPVD  321 (327)
T ss_dssp             CCGGG
T ss_pred             CCHHH
Confidence            44443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.7e-31  Score=243.65  Aligned_cols=186  Identities=26%  Similarity=0.364  Sum_probs=137.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCC-cHHHHHH----
Q 012683           92 TPLLHAARQGHTETAKYLFEHGAN--PTIPSNLGATALHHSAGIGNIELLTYLLSKGA-EVDSESDAG-TPLIWAA----  163 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~-t~l~~A~----  163 (458)
                      +++|.|+..|+.+.++.+++.+.+  ++..|..|.||||+|+..|+.+++++|++.|. +++..+..+ ||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            344555555555555555544433  44555555555555555555555555555554 444444333 5555555    


Q ss_pred             -hCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          164 -GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       164 -~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                       ..++.+++++|++.|.+.+..+..|.||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.++|++|++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence             446777888888888877778888889999999999999999999999988877 679999999999999999999998


Q ss_pred             -cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          242 -AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       242 -~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                       .|++++.+|..|+||||+|+..|+.+++++|+++..
T Consensus       238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence             899999999999999999999999999999987643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6.5e-31  Score=239.86  Aligned_cols=190  Identities=25%  Similarity=0.331  Sum_probs=175.6

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHH
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLD--VDTQDEDGETPLLHAARQGHTETAKYLFEHGA-NPTIPSNLGATALHH  129 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~  129 (458)
                      +..+.+++|.|+..|+.+.++.++.. +.+  ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence            34567889999999999999999876 444  78899999999999999999999999999998 999999999999999


Q ss_pred             HH-----HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683          130 SA-----GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC  203 (458)
Q Consensus       130 A~-----~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  203 (458)
                      |+     ..++.+++++|++.|...+..+..+ ||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+.++
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i  231 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI  231 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            99     6688999999999998887766544 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-cCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcC
Q 012683          204 LDLLIQ-AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG  243 (458)
Q Consensus       204 ~~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g  243 (458)
                      +++|++ .|++++.. ..|.||||+|+..|+.+++++|++++
T Consensus       232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999 89999988 78999999999999999999999863

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.5e-30  Score=220.84  Aligned_cols=162  Identities=28%  Similarity=0.359  Sum_probs=119.1

Q ss_pred             hhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683           48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL  127 (458)
Q Consensus        48 ~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  127 (458)
                      ..+..|.+|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            3456777888888888888888888888887 778888888888888888888888888888888888888877788888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 012683          128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL  206 (458)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  206 (458)
                      |+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            88777777777777777777666554433 66666666666666666666666666666666666666666666666666


Q ss_pred             HHHc
Q 012683          207 LIQA  210 (458)
Q Consensus       207 Ll~~  210 (458)
                      |++.
T Consensus       186 Ll~~  189 (192)
T 2rfm_A          186 FTEV  189 (192)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.3e-30  Score=222.28  Aligned_cols=161  Identities=29%  Similarity=0.330  Sum_probs=116.5

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHH
Q 012683           83 VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWA  162 (458)
Q Consensus        83 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A  162 (458)
                      ++.+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.                 
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------------   90 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-----------------   90 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-----------------
Confidence            456677777777777777777777777777777777766666666666666555555555554                 


Q ss_pred             HhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          163 AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       163 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                                     |++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|++
T Consensus        91 ---------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  155 (192)
T 2rfm_A           91 ---------------GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE  155 (192)
T ss_dssp             ---------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             ---------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                           4455555566667777777777777777777777776665 567788888888888888888888


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          242 AGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       242 ~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      +|++++.+|..|+||+|+|+..|+.+++++|+++
T Consensus       156 ~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          156 LGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            8888888888888888888888888888888764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.5e-30  Score=216.75  Aligned_cols=169  Identities=26%  Similarity=0.374  Sum_probs=103.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      +.||||.|+..|+.+++++|++..+..++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45778888888888888888877333467777788888888888888888888888888877777777777777777666


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 012683          136 IELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN  215 (458)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~  215 (458)
                      .+++++|++.|++++                                ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        82 ~~~v~~Ll~~g~~~~--------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  129 (172)
T 3v30_A           82 TDIVGLLLERDVDIN--------------------------------IYDWNGGTPLLYAVRGNHVKCVEALLARGADLT  129 (172)
T ss_dssp             HHHHHHHHTTTCCTT--------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHcCCCCC--------------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            666666666555544                                344444444444444444444444444444444


Q ss_pred             cc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683          216 IV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKP  256 (458)
Q Consensus       216 ~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~  256 (458)
                      .. ..|.||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             ccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            44 345555555555555555555555555555555555444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.5e-29  Score=213.03  Aligned_cols=158  Identities=27%  Similarity=0.392  Sum_probs=122.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  134 (458)
                      .|.||||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            477888888888888888888887 7888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (458)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  213 (458)
                      +.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+..|+.+++++|++++.+
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            8888888877777776555443 777777777777777777777777766666666666666666666666666665543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=9.8e-30  Score=215.17  Aligned_cols=142  Identities=23%  Similarity=0.295  Sum_probs=123.5

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH  128 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  128 (458)
                      .+..+..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  107 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL  107 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            567788999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 012683          129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITP  191 (458)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  191 (458)
                      +|+..|+.+++++|++.|++++..+..+ ||||+|+..++.+++++|++++.++...+..|.||
T Consensus       108 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          108 YAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999999999999998887766544 88888888888888888888887777766666665

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.5e-29  Score=212.02  Aligned_cols=156  Identities=38%  Similarity=0.544  Sum_probs=107.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCH
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ  168 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~  168 (458)
                      .+.++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++                              
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~------------------------------   62 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI------------------------------   62 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH------------------------------
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH------------------------------
Confidence            44556666666666666666666666655555555555555555555554                              


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (458)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  247 (458)
                        +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++
T Consensus        63 --v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  140 (169)
T 2y1l_E           63 --VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN  140 (169)
T ss_dssp             --HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             --HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence              45555555555556666677777777777777777777777777665 567788888888888888888888888888


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          248 VTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      .+|..|.||||+|+..|+.+++++|+++|
T Consensus       141 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          141 AQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            88888888888888888888888887654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3.4e-29  Score=211.12  Aligned_cols=160  Identities=32%  Similarity=0.431  Sum_probs=133.8

Q ss_pred             hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (458)
Q Consensus        51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  130 (458)
                      .....+.|+|+.|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            3445678999999999999999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683          131 AGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ  209 (458)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  209 (458)
                      +..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999999999998888877665444 77777777777777777777777777777777777777777777777777766


Q ss_pred             cC
Q 012683          210 AG  211 (458)
Q Consensus       210 ~g  211 (458)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            54

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.3e-29  Score=210.72  Aligned_cols=156  Identities=29%  Similarity=0.364  Sum_probs=106.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  134 (458)
                      ...||||.|+..|+.+++++|++. |.+++..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            345788888888888888888875 77777777788888888777 8888888888888887777777777777777777


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHAN-PNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (458)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  212 (458)
                      +.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|.+ ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            7777777777666665544433 666666666666666666666555 35555555555555555555555555555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.2e-29  Score=210.94  Aligned_cols=156  Identities=24%  Similarity=0.328  Sum_probs=103.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCH
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ  168 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~  168 (458)
                      .|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++                        
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------------------   57 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------------------   57 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH------------------------
Confidence            35566666666666666666666666666555555555555555555555555555                        


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCC
Q 012683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN  247 (458)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  247 (458)
                              +|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++
T Consensus        58 --------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           58 --------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             --------TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             --------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                    44455555556666666666666666666666666666655 557777777777777777777777777777


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          248 VTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      .+|..|+||+|+|+..|+.+++++|++++
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          130 IETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            77777777777777777777777777654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.6e-29  Score=207.31  Aligned_cols=149  Identities=27%  Similarity=0.374  Sum_probs=121.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683          124 ATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC  203 (458)
Q Consensus       124 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  203 (458)
                      .|+|+.|+..|+.+++++|++.|.+++....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence            35666666666666666666666655544444477777777777777777777777777788888888888888888888


Q ss_pred             HHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683          204 LDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL  272 (458)
Q Consensus       204 ~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (458)
                      +++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        83 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888888877 6789999999999999999999999999999999999999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.4e-32  Score=259.73  Aligned_cols=249  Identities=16%  Similarity=0.144  Sum_probs=181.5

Q ss_pred             HHHHHHHHH-cCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCC---CCCCCCC
Q 012683           15 VQQFLNAAC-TGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDV---DTQDEDG   90 (458)
Q Consensus        15 ~~~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g   90 (458)
                      ...++.|.. .++.++++++++.                +.++.||||+|+..|+.++|++|++. |...   +..+..|
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~----------------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~  128 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKK----------------GIKSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAEN  128 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHH----------------TCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHc----------------CCCcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCC
Confidence            344555555 4667777776654                34556999999999999999999987 6522   2445578


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC--CCC-CCcHHHHHH-
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS--ESD-AGTPLIWAA-  163 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~--~~~-~~t~l~~A~-  163 (458)
                      .||||+|+..|+.++|++|+++|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+. +.||||+|+ 
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~  207 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV  207 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHH
Confidence            89999999999999999999999752   222333 8999999999999999999999998654  333 349999999 


Q ss_pred             hCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcC------------
Q 012683          164 GHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIG------------  231 (458)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~------------  231 (458)
                      ..|+.+++++|++.|.       .|.|||+.|+..|+.+++++|+++|++++..   .++++.|+..|            
T Consensus       208 ~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~---~~~l~~A~~~g~~~vv~~~~~~~  277 (376)
T 2aja_A          208 GRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEM---HDAFKLSNPDGVFDLVTKSECLQ  277 (376)
T ss_dssp             TTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHH---HTTTTTTSSSSCCCCSSHHHHHH
T ss_pred             HCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccc---cHHHHHHHHCCChhhhcHHhhhh
Confidence            9999999999999774       3889999999999999999999999887643   12333333333            


Q ss_pred             ---------------cHHHHHHHHHcCC-----CCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHH
Q 012683          232 ---------------STEIIKCLLKAGA-----DPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGIL  291 (458)
Q Consensus       232 ---------------~~~iv~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  291 (458)
                                     ..+.+++|++.+.     +.......+.||||+|+..|+.+++++|++++    .+++|..++..
T Consensus       278 ~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~  353 (376)
T 2aja_A          278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANNY  353 (376)
T ss_dssp             HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----
T ss_pred             hHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhcc
Confidence                           3456666665321     11223345678999999999999999999864    45556666655


Q ss_pred             HHHH
Q 012683          292 EYMQ  295 (458)
Q Consensus       292 ~~~~  295 (458)
                      .+..
T Consensus       354 ~~~~  357 (376)
T 2aja_A          354 YINE  357 (376)
T ss_dssp             ----
T ss_pred             cccc
Confidence            4433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=4.8e-29  Score=208.74  Aligned_cols=154  Identities=29%  Similarity=0.379  Sum_probs=87.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCH
Q 012683           90 GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ  168 (458)
Q Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~  168 (458)
                      ..||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|++.|++++..+..+ ||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3466777777777777777777776666666666666666665 66666666666555554443322 455555555555


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCC-CC
Q 012683          169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD-PN  247 (458)
Q Consensus       169 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~-~~  247 (458)
                      +++++|+++|++++..+..                                |.||||+|+..|+.+++++|+++|++ ++
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~--------------------------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  131 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNE--------------------------------GNLPLHLAAKEGHLRVVEFLVKHTASNVG  131 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTT--------------------------------SCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCC--------------------------------CCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence            5555555554444444444                                55555555555555555555555554 35


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          248 VTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       248 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      .+|..|+||||+|+..|+.+++++|+++|
T Consensus       132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          132 HRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            55555555555555555555555555544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=7.2e-29  Score=211.28  Aligned_cols=163  Identities=23%  Similarity=0.290  Sum_probs=117.4

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      .++.++||.|+..|+.+++++|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            35678899999999999999998887778888888899999999999999999999999988888888888888888887


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  212 (458)
                      |+.+++++|++.|++++..+..+ ||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|++.|+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            77777777777776665554433 66666666666666666666666665555555555555555555555555555555


Q ss_pred             Cccc
Q 012683          213 NANI  216 (458)
Q Consensus       213 ~~~~  216 (458)
                      +++.
T Consensus       163 ~~~~  166 (179)
T 3f6q_A          163 NLNR  166 (179)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            5543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.4e-29  Score=209.62  Aligned_cols=160  Identities=29%  Similarity=0.379  Sum_probs=132.1

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      .+..|.|+||.|+..|+.++++.|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            45678899999999999999999998767888888889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                      ..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.||+++|+. |+.+++++|+++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            9988888888888888877665544 77888887777777777777777777777777777777655 677777777776


Q ss_pred             CC
Q 012683          211 GA  212 (458)
Q Consensus       211 g~  212 (458)
                      |+
T Consensus       163 gA  164 (165)
T 3twr_A          163 AA  164 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.1e-28  Score=200.94  Aligned_cols=150  Identities=27%  Similarity=0.387  Sum_probs=113.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      ..|+||.|+..|+.+++++|++. |.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            35788888888888888888887 77665 47778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (458)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  207 (458)
                      .+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            888888877777776555444 777777777777777777777777666666666666666666666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.7e-32  Score=238.58  Aligned_cols=181  Identities=24%  Similarity=0.252  Sum_probs=119.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~  167 (458)
                      .+.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            34455666666666666666666666666666666666666666666666666666666665544333 66666666666


Q ss_pred             HHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcC
Q 012683          168 QEAVKVLLEHHANPNAET-EDNITPLLSA--VAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAG  243 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g  243 (458)
                      .+++++|+++|++++..+ ..|.||||+|  +..|+.+++++|++.|++++.. ..|.|+++.++..+   .+++|++.|
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~g  176 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELSFREG  176 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTT
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccCcccc
Confidence            666666666666666654 4667777776  6667777777777777766665 44566666444333   235677788


Q ss_pred             CC--CCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683          244 AD--PNVTDEDGQKPIQVAAARGNREAVEIL  272 (458)
Q Consensus       244 ~~--~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (458)
                      ++  ++.+|..|+||||+|+.+|+.++|+.+
T Consensus       177 a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             ccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            77  677888899999999999998888654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2.8e-28  Score=207.57  Aligned_cols=164  Identities=23%  Similarity=0.285  Sum_probs=121.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHG  166 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~  166 (458)
                      .+.++||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            466788888888888888888887 56677888888888888888888888888888887777665444 7777777777


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (458)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  245 (458)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..++.+++++|+++|++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            777777777777777777777777777777777777777777777777666 5677777777777777777777777777


Q ss_pred             CCCCCCC
Q 012683          246 PNVTDED  252 (458)
Q Consensus       246 ~~~~~~~  252 (458)
                      ++..+..
T Consensus       164 ~~~~~~~  170 (179)
T 3f6q_A          164 LNRIPYK  170 (179)
T ss_dssp             CSCBCCC
T ss_pred             cccCCcc
Confidence            6655543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.1e-32  Score=238.45  Aligned_cols=189  Identities=21%  Similarity=0.184  Sum_probs=170.1

Q ss_pred             hhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 012683           48 VADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATAL  127 (458)
Q Consensus        48 ~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  127 (458)
                      ..+..+.++.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus        13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL   91 (229)
T 2vge_A           13 KARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL   91 (229)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            3445677889999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCC--CCCcHHHHH--HhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 012683          128 HHSAGIGNIELLTYLLSKGAEVDSES--DAGTPLIWA--AGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTC  203 (458)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  203 (458)
                      |+|+..|+.+++++|++.|++++..+  .+.||||+|  +..|+.+++++|++.|++++..+..|.++++.++..+.   
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---  168 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---  168 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---
Confidence            99999999999999999999998764  455999999  99999999999999999999999999999986555543   


Q ss_pred             HHHHHHcCCCccc--c-CCCCcHHHHHHhcCcHHHHHHHH
Q 012683          204 LDLLIQAGANANI--V-AGGATPLHIAADIGSTEIIKCLL  240 (458)
Q Consensus       204 ~~~Ll~~g~~~~~--~-~~g~t~L~~A~~~~~~~iv~~Ll  240 (458)
                      .++|++.|++++.  . ..|.||||+|+..|+.++|+.++
T Consensus       169 ~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            3677888998543  3 56999999999999999998644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.6e-28  Score=206.26  Aligned_cols=157  Identities=30%  Similarity=0.446  Sum_probs=114.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCC-CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 012683          120 SNLGATALHHSAGIGNIELLTYLLSKG-AEVDSESD-AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVA  197 (458)
Q Consensus       120 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  197 (458)
                      +..|.|+||.|+..|+.+++++|++.+ .+++..+. +.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            344555556666555666655555532 23332222 2366666777777777777777777777777788888888888


Q ss_pred             cCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          198 AGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       198 ~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      .|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+. ++.+++++|++.+
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            88888888888888888776 668889999999999999999999999999999999999998766 8889999998765


Q ss_pred             C
Q 012683          277 S  277 (458)
Q Consensus       277 ~  277 (458)
                      +
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=7.8e-28  Score=199.97  Aligned_cols=152  Identities=26%  Similarity=0.374  Sum_probs=121.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      +.||||.|+..|+.+++++|++..+.+++..+..|.||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45889999999999999999887566888888889999999 88899999999999999988888888888888888888


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQ  209 (458)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  209 (458)
                      .+++++|++.|++++..+..+ ||||+|+..|+.+++++|++. ++++..+..|.|||++|+..|+.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            888888888887776655444 777777777777777777777 6777777777777777777777777776665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1e-27  Score=199.24  Aligned_cols=149  Identities=28%  Similarity=0.438  Sum_probs=107.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683          125 TALHHSAGIGNIELLTYLLSK-GAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLT  202 (458)
Q Consensus       125 t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  202 (458)
                      |+||.|+..|+.+++++|++. +.+++..+..+ ||||+ +..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            445555555555555555444 11333333222 55555 5556666666666666666677777788888888888888


Q ss_pred             HHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          203 CLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       203 ~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      ++++|+++|++++.. ..|.||||+|+..|+.+++++|+++ ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            888888888887766 5688888999999999999999988 88888999999999999999999999988864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=8.6e-32  Score=254.27  Aligned_cols=238  Identities=17%  Similarity=0.160  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCC---CCCCCCC
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDV---DTQDEDG   90 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g   90 (458)
                      ..++||.|+..|+.++|++|++....      .......+..|.||||+||..|+.++|++|++. |+++   +..+.+ 
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~------~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-  163 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTS------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-  163 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--C------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCc------HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-
Confidence            35899999999999999999976221      111123345678999999999999999999998 7542   222223 


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCC
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANPTI--PSNLGATALHHSA-GIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQ  167 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~  167 (458)
                      .||||+|+..|+.++|++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|..      +.|||++|+..|+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------~~taL~~Aa~~g~  237 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------LAYAEIHEFEYGE  237 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------HHHHHHCTTTTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------cchHHHHHHHCCC
Confidence            8999999999999999999999999876  7788999999999 99999999999997742      4499999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC---------------------------CHHHHHHHHHc---------C
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAG---------------------------SLTCLDLLIQA---------G  211 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~---------------------------~~~~~~~Ll~~---------g  211 (458)
                      .+++++|+++|.+++..+    ++++.|+..|                           ..+.+++|++.         |
T Consensus       238 ~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g  313 (376)
T 2aja_A          238 KYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  313 (376)
T ss_dssp             TTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence            999999999877653321    1222222222                           24455666653         3


Q ss_pred             CCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          212 ANANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       212 ~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      ++++   .+.||||+|+..|+.++|++|++.|   ..++..|+|++.+|-..|+.++++.-+.+
T Consensus       314 ~~~n---~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          314 TIPG---DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             SSTT---CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC----------------------
T ss_pred             CCCC---CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHHH
Confidence            3333   4779999999999999999999864   67788899999999999999999877654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=7.3e-29  Score=221.46  Aligned_cols=185  Identities=22%  Similarity=0.268  Sum_probs=101.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~  167 (458)
                      .|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+..+ ||||+|+..|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            3455555555555555555555555555432 344555555555555555555555555554444333 55555666666


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCC-cHHHHH--HhcCcHHHHHHHHHcC
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGA-TPLHIA--ADIGSTEIIKCLLKAG  243 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~-t~L~~A--~~~~~~~iv~~Ll~~g  243 (458)
                      .+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.. ..|. ||||+|  +..|+.+++++|+++|
T Consensus        83 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B           83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence            66666666666667777777777777777777777777777777777766 3333 888887  6777888888888877


Q ss_pred             CCCCCC---------CCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          244 ADPNVT---------DEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       244 ~~~~~~---------~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ++++..         +..+.++++++...|.  ++++|...+
T Consensus       163 a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~  202 (239)
T 1ycs_B          163 EKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED  202 (239)
T ss_dssp             HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred             hcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence            777665         6678899988888886  455555443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.4e-28  Score=217.09  Aligned_cols=203  Identities=20%  Similarity=0.285  Sum_probs=146.0

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           54 ANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      ..|.||||.|+..|+.++++.|+++ |.+++.. ..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4689999999999999999999998 9998864 6789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHH--HHcCCHHHHHHHHH
Q 012683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNI-TPLLSA--VAAGSLTCLDLLIQ  209 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~Ll~  209 (458)
                      |+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|. ||+|+|  +..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            99999999999999998877655 999999999999999999999999999988877 999999  88899999999999


Q ss_pred             cCCCcccc----------CCCCcHHHHHHhcCcHHHHHHHHHcCCC------CCCCCCCCCcHHHHH
Q 012683          210 AGANANIV----------AGGATPLHIAADIGSTEIIKCLLKAGAD------PNVTDEDGQKPIQVA  260 (458)
Q Consensus       210 ~g~~~~~~----------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~------~~~~~~~g~t~l~~A  260 (458)
                      +|++++..          ..+.+++++++..|.  +++.|.+.+.+      ....+..|.+|.++.
T Consensus       161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred             hhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence            99888764          347888888888876  45555444333      123455566776654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=1.1e-25  Score=182.32  Aligned_cols=131  Identities=24%  Similarity=0.247  Sum_probs=70.9

Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-C-cH
Q 012683           81 LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDA-G-TP  158 (458)
Q Consensus        81 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~-t~  158 (458)
                      .+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|++.|++++..+.. + ||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            4455555555666666666666666666666555555555555555555555 5555555555555554444332 2 45


Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683          159 LIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (458)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  212 (458)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            555555555555555555555555555555555555555555555555555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=8.1e-26  Score=183.05  Aligned_cols=120  Identities=33%  Similarity=0.436  Sum_probs=85.8

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CCcHHHHHHhcCcHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGSTE  234 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~~  234 (458)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|+++|++++.. .. |.||||+|+..|+.+
T Consensus        14 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~   92 (136)
T 1d9s_A           14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   92 (136)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            66666666666666666666666666666667777777777 7777777777777777666 44 677777777777777


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                      ++++|+++|++++.+|..|+||||+|+..++.+++++|+++++
T Consensus        93 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           93 TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7777777777777777777777777777777777777776553

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2.5e-26  Score=195.88  Aligned_cols=151  Identities=13%  Similarity=0.155  Sum_probs=112.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683          125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ----EAVKVLLEHHANPNAETEDNITPLLSAVAAGS  200 (458)
Q Consensus       125 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  200 (458)
                      ++|+.|+..|+.+.++.++..+.+......+.||||+|+.+++.    +++++|+++|++++.++..|+||||+|+..|+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~   87 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG   87 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            45555555555555555555443321112234666666666653    47777888888888888888888888887776


Q ss_pred             ------HHHHHHHHHcCCCcccc-CCCC-cHHHHHHhc-----CcHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683          201 ------LTCLDLLIQAGANANIV-AGGA-TPLHIAADI-----GSTEIIKCLLK-AGADPNVTDEDGQKPIQVAAARGNR  266 (458)
Q Consensus       201 ------~~~~~~Ll~~g~~~~~~-~~g~-t~L~~A~~~-----~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~  266 (458)
                            .+++++|+++|++++.. ..|. ||||+|+..     ++.+++++|++ +|++++.+|..|+||||+|+..|+.
T Consensus        88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A           88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH
T ss_pred             cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH
Confidence                  56788888888888877 5677 888888884     45679999999 9999999999999999999999999


Q ss_pred             HHHHhhcCC
Q 012683          267 EAVEILFPL  275 (458)
Q Consensus       267 ~~v~~Ll~~  275 (458)
                      ++|++|.++
T Consensus       168 ~~v~~L~~~  176 (186)
T 3t8k_A          168 IALKMMEDY  176 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999854

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.1e-25  Score=186.85  Aligned_cols=143  Identities=22%  Similarity=0.294  Sum_probs=103.0

Q ss_pred             hhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHH
Q 012683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGAT-ALH  128 (458)
Q Consensus        50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~  128 (458)
                      ...+..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+ .|+.+++++|+++|++++..+..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            34566788899999999999999888887 8888888888889998885 88888899888888888888888888 888


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 012683          129 HSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLS  194 (458)
Q Consensus       129 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  194 (458)
                      +|+..|+.+++++|+++|++++..+..+ ||||+|+..|+.+++++|+++|++++..+..|.|+.+.
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            8888888888888888888777665544 78888888888888888888887777777777776653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.4e-25  Score=186.26  Aligned_cols=139  Identities=25%  Similarity=0.375  Sum_probs=80.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCc-HHHHHHHc
Q 012683          121 NLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNIT-PLLSAVAA  198 (458)
Q Consensus       121 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t-~l~~a~~~  198 (458)
                      ..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+ .|+.+++++|+++|++++..+..|.| |||+|+..
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~   88 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   88 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence            334444444444444444444444444444333322 5555553 55666666666666666777777777 88888888


Q ss_pred             CCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683          199 GSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (458)
Q Consensus       199 ~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  260 (458)
                      |+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           89 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            8888888888888877776 5688888888888888888888888888888888888887643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=7.7e-26  Score=192.81  Aligned_cols=160  Identities=15%  Similarity=0.126  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCC
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKT----DVCKYLLEELKLDVDTQDE   88 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~   88 (458)
                      ..++.|+.||+.|+++.++.++....          ....+..|.||||+|+..|+.    +++++|++. |++++.++.
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~----------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~   73 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGY----------EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTK   73 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSS----------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCT
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCc----------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCC
Confidence            45567888888888888887776511          111235688888888888864    478888876 888888888


Q ss_pred             CCCcHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHH
Q 012683           89 DGETPLLHAARQGH------TETAKYLFEHGANPTIPSNLGA-TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIW  161 (458)
Q Consensus        89 ~g~t~L~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~  161 (458)
                      .|+||||+|+..|+      .+++++|+++|++++.+|..|. ||||+|+..+..+                        
T Consensus        74 ~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~------------------------  129 (186)
T 3t8k_A           74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE------------------------  129 (186)
T ss_dssp             TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH------------------------
T ss_pred             CCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh------------------------
Confidence            88888888888776      5678888888888888888887 7888777643211                        


Q ss_pred             HHhCCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          162 AAGHGQQEAVKVLLE-HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       162 A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                         .+..+++++|++ +|++++..|..|.||||+|+..|+.+++++|.+.
T Consensus       130 ---~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          130 ---NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             ---HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence               112345555555 5555555555556666666655655555555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.4e-24  Score=175.76  Aligned_cols=120  Identities=42%  Similarity=0.598  Sum_probs=112.8

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i  235 (458)
                      ||||+|+..|+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.++
T Consensus        16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~   95 (136)
T 2jab_A           16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI   95 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            8999999999999999999999999999999999999999999999999999999999877 679999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        96 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=8.6e-24  Score=168.54  Aligned_cols=124  Identities=46%  Similarity=0.674  Sum_probs=85.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  134 (458)
                      +|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            467777777777777777777776 7777777777777777777777777777777777777777777777777777766


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCC
Q 012683          135 NIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA  179 (458)
Q Consensus       135 ~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~  179 (458)
                      +.+++++|++.|++++..+..+ |||++|+..++.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            6666666666666655444333 55555555555555555555554

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.8e-24  Score=172.54  Aligned_cols=126  Identities=32%  Similarity=0.497  Sum_probs=100.8

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      ....+.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            345677889999999999999988887 8888888888899999999999999999999888888888888888888888


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcC
Q 012683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH  178 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~  178 (458)
                      ..|+.+++++|++.|++++..+..+ ||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8888888888888777776555443 7777777777777777776654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.5e-23  Score=167.04  Aligned_cols=125  Identities=43%  Similarity=0.627  Sum_probs=95.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ  167 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~  167 (458)
                      +|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..+ ||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47888888888888888888888888888888888888888888888888888888777776555433 77777777777


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGAN  213 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  213 (458)
                      .+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777777776677777777777777777777777766654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.7e-24  Score=175.44  Aligned_cols=131  Identities=27%  Similarity=0.339  Sum_probs=108.8

Q ss_pred             CCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHH
Q 012683          147 AEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLH  225 (458)
Q Consensus       147 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~  225 (458)
                      .++.....+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||
T Consensus         2 ~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             --CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            34433344457888888888888888888888888888888999999999999999999999999988877 66899999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          226 IAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       226 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                      +|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++++|.+.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999999998876654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.8e-23  Score=169.45  Aligned_cols=122  Identities=25%  Similarity=0.392  Sum_probs=59.1

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           52 KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        52 ~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      .|.+|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            344455555555555555555555544 4555555555555555555555555555555555555555444555555555


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L  174 (458)
                      ..|+.+++++|++.|++++..+..+ ||+++|+..+..+++++|
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            4444444444444444444333322 444444444444443333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=3.9e-23  Score=184.67  Aligned_cols=140  Identities=28%  Similarity=0.319  Sum_probs=85.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCcHHHHHHhCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAGHG  166 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~t~l~~A~~~~  166 (458)
                      .|.||||.|+..|+.+++++|++ |++++..|..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            34455555555555555555555 55555555555555555555555555555555555554433 2 226666666666


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683          167 QQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGAD  245 (458)
Q Consensus       167 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  245 (458)
                      +.+++++|+++|++++..+..|.||||+|+..++.                ..+.||||+|+..|+.+++++|++++.+
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~----------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT----------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc----------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            66666666666677777777777777777653221                1267899999999999999999876443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=6.3e-23  Score=174.98  Aligned_cols=109  Identities=34%  Similarity=0.414  Sum_probs=77.8

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSA  131 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~  131 (458)
                      +..|.||||+|+..|+.++++.|++  +.+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4567788888888888888888887  77888888888888888888888888888888888887776 66667766666


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH
Q 012683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~  163 (458)
                      ..|+.+++++|++.|++++..+..+ ||||+|+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            6666666666655555544333322 4444444

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.3e-22  Score=173.10  Aligned_cols=139  Identities=28%  Similarity=0.321  Sum_probs=122.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C-CCcHHHHHHh
Q 012683           87 DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-D-AGTPLIWAAG  164 (458)
Q Consensus        87 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~-~~t~l~~A~~  164 (458)
                      +..|.||||.|+..|+.++++.|++ |++++..|..|.||||+|+..|+.+++++|++.|++++..+ . +.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3468899999999999999999999 99999999999999999999999999999999999997666 4 3499999999


Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHc
Q 012683          165 HGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKA  242 (458)
Q Consensus       165 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  242 (458)
                      .|+.+++++|+++|++++..+..|.||||+|+..++.                ..+.++|++|+..|+.+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999874332                2367889999999999999988764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1.4e-22  Score=181.06  Aligned_cols=144  Identities=28%  Similarity=0.308  Sum_probs=119.3

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS-NLGATALHHSA  131 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~  131 (458)
                      +..|.||||+|+..|+.+++++|++  +.+++..|..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4568889999999999999988887  78888888889999999999999999999999998888887 77889999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          132 GIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                      ..|+.+++++|+++|++++..+..+ ||||+|+..++                 ...+.|||++|+..|+.+++++|++.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999988888766555 89998875221                 24577899999999999999988887


Q ss_pred             CCCcc
Q 012683          211 GANAN  215 (458)
Q Consensus       211 g~~~~  215 (458)
                      +.+..
T Consensus       183 ~~~~~  187 (244)
T 3ui2_A          183 VFEYA  187 (244)
T ss_dssp             HEEEE
T ss_pred             ccccc
Confidence            65543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.3e-22  Score=160.93  Aligned_cols=112  Identities=28%  Similarity=0.403  Sum_probs=101.9

Q ss_pred             CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       156 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      .||||+|+..|+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~   87 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   87 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            38999999999999999999999999999999999999999999999999999999999887 67999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNRE  267 (458)
Q Consensus       235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  267 (458)
                      ++++|+++|++++.+|..|+||+|+|...+..+
T Consensus        88 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           88 CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            999999999999999999999999995433333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.88  E-value=4.9e-22  Score=158.18  Aligned_cols=116  Identities=32%  Similarity=0.540  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      .+.++.++++|+.+++.|+|++|++.|+++++++|.++.+|+++|.++.++|++++|+.+|++|++++|+++.+|+++|.
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   89 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      ++..+|++++|++.|+++++++|++++++..++.++
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999998874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=6.7e-23  Score=180.64  Aligned_cols=138  Identities=24%  Similarity=0.305  Sum_probs=99.9

Q ss_pred             hhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHH
Q 012683           49 ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH-GANPTIPSNLGATAL  127 (458)
Q Consensus        49 ~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L  127 (458)
                      .+..+..|.||||+|+..|+.+++++|++. |.+++..+..|.||||+|+..|+.++|++|++. |++++..|..|.|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            344566778888888888888888888886 888888888888888888888888888888887 888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCC
Q 012683          128 HHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETED  187 (458)
Q Consensus       128 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  187 (458)
                      |+|+..|+.+++++|++.|++++..+..+ |||++|+..++.++++.|++.++.....+..
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~  205 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE  205 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence            88888888888888888887777665544 7777777777777777777777665554433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=1e-21  Score=178.61  Aligned_cols=197  Identities=20%  Similarity=0.185  Sum_probs=147.1

Q ss_pred             CCCCCC-----CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 012683           80 KLDVDT-----QDEDGETPLLHAARQGHTETAKYLFEHGANPTI-PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES  153 (458)
Q Consensus        80 ~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  153 (458)
                      |..+..     .|..+.+.++.+...|+..+.+++...-..... +-..+....+    ....-..+++...........
T Consensus        51 g~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~  126 (278)
T 1dcq_A           51 GVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHAD  126 (278)
T ss_dssp             CTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSS
T ss_pred             CCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccc
Confidence            555553     567888899999999998777766433221111 0011111111    111111223322221111111


Q ss_pred             -CC-CcHHHHHHhCCCHHHHHHHHhcCCCC------CCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccc-CCCC
Q 012683          154 -DA-GTPLIWAAGHGQQEAVKVLLEHHANP------NAETEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV-AGGA  221 (458)
Q Consensus       154 -~~-~t~l~~A~~~~~~~~~~~Ll~~~~~~------~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~-~~g~  221 (458)
                       .. .++|+.|+..|+.+.++.++..|.++      +..+..|.||||+|+..   |+.+++++|+++|++++.. ..|.
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~  206 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence             11 16899999999999999999999984      44478899999999999   8999999999999999987 7899


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCC
Q 012683          222 TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDP  280 (458)
Q Consensus       222 t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  280 (458)
                      ||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++++...
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999887543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=179.91  Aligned_cols=137  Identities=20%  Similarity=0.174  Sum_probs=83.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCC------CCC-CCcHHHHHHhC---CCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 012683          123 GATALHHSAGIGNIELLTYLLSKGAEVDS------ESD-AGTPLIWAAGH---GQQEAVKVLLEHHANPNAETEDNITPL  192 (458)
Q Consensus       123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~------~~~-~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l  192 (458)
                      +.++|+.|+..|+.+.++.|++.|++++.      .+. +.||||+|+..   ++.+++++|+++|++++..|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34556666666666666666666666654      222 22666666665   666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683          193 LSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN  265 (458)
Q Consensus       193 ~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  265 (458)
                      |+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++      .|.||||+|+.+|+
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            6666666666666666666666655 5566666666666666666666666554      45666666666654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3.2e-22  Score=158.76  Aligned_cols=110  Identities=26%  Similarity=0.332  Sum_probs=88.7

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG  132 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  132 (458)
                      +..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45677888888888888888888886 88888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH
Q 012683          133 IGNIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (458)
Q Consensus       133 ~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~  163 (458)
                      .|+.+++++|++.|++++..+..+ |||++|.
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            888888888888877776665544 7777773

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=5.7e-22  Score=182.34  Aligned_cols=143  Identities=23%  Similarity=0.247  Sum_probs=121.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCC
Q 012683           86 QDEDGETPLLHAARQGHTETAKYLFEHGANPTI------PSNLGATALHHSAGI---GNIELLTYLLSKGAEVDSESDAG  156 (458)
Q Consensus        86 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~  156 (458)
                      ......++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|++.|++++..+..+
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTC
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCC
Confidence            344566889999999999999999999999887      588899999999987   88999999999999998777555


Q ss_pred             -cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcH
Q 012683          157 -TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGST  233 (458)
Q Consensus       157 -t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~  233 (458)
                       ||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|++.|++     .|.||||+|+..|+.
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCCc
Confidence             999999999999999999999999999999999999999999999999999999876     378999999998864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=7e-22  Score=174.10  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA-GANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      ||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++.. ..|.||||+|+..|+.+
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~  154 (222)
T 3ehr_A           75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD  154 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            444444444444444444444444444444444444444444444444444444 4444444 34555555555555555


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCC
Q 012683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTS  277 (458)
Q Consensus       235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  277 (458)
                      +|++|+++|++++.+|..|+||||+|+..++.++++.|+..+.
T Consensus       155 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            5555555555555555555555555555555555555555444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=6.8e-21  Score=142.87  Aligned_cols=93  Identities=45%  Similarity=0.659  Sum_probs=86.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIG  134 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  134 (458)
                      +|.||||+|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            478999999999999999999997 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCC
Q 012683          135 NIELLTYLLSKGAE  148 (458)
Q Consensus       135 ~~~~~~~Ll~~~~~  148 (458)
                      +.+++++|++.|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=2.4e-20  Score=169.58  Aligned_cols=133  Identities=19%  Similarity=0.216  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhh-hhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTV-ADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQD   87 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~   87 (458)
                      .....+|+.|+..||++.++.+++.    +.++...+ .+..+..|.||||+|+..   |+.+++++|++. |++++..|
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~----g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d  202 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYAD----GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQT  202 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT----TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCC
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHh----hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccC
Confidence            4567899999999999999999886    33332222 455688899999999999   899999999998 99999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 012683           88 EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV  149 (458)
Q Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  149 (458)
                      ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|++.
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999988753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.1e-20  Score=177.71  Aligned_cols=122  Identities=35%  Similarity=0.488  Sum_probs=116.2

Q ss_pred             cHHHHHHhC-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCc
Q 012683          157 TPLIWAAGH-GQQEAVKVLLEHHANPNAET--EDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGS  232 (458)
Q Consensus       157 t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~  232 (458)
                      |+||.|+.. ++.++++.|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  280 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH  280 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc
Confidence            799999999 99999999999999999988  88999999999999999999999999999987 779999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          233 TEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       233 ~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      .++|++|+++|++++.+|..|+||||+|+..|+.+++++|+..+..
T Consensus       281 ~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          281 TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999977643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.2e-20  Score=141.43  Aligned_cols=91  Identities=42%  Similarity=0.667  Sum_probs=77.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683          187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGN  265 (458)
Q Consensus       187 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  265 (458)
                      +|+||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            4778888888888888888888888888877 678889999999999999999999898888888889999999999999


Q ss_pred             HHHHHhhcCCCC
Q 012683          266 REAVEILFPLTS  277 (458)
Q Consensus       266 ~~~v~~Ll~~~~  277 (458)
                      .+++++|+++++
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999998887764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.3e-20  Score=177.14  Aligned_cols=120  Identities=24%  Similarity=0.362  Sum_probs=64.0

Q ss_pred             CcHHHHHHHc-CCHHHHHHHHHhCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           57 RGALHFAARE-GKTDVCKYLLEELKLDVDTQD--EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        57 ~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      .|+||.|+.. |++++++.|++. |++++..+  ..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            3455555555 555555555554 55555554  4555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhc
Q 012683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH  177 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~  177 (458)
                      |+.+++++|+++|++++..+..+ ||||+|+..++.+++++|+..
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            55555555555555554444333 555555555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.83  E-value=4.7e-20  Score=153.79  Aligned_cols=131  Identities=23%  Similarity=0.291  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc------------------CCCchhHHHhHHHHHHhhCCHHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF------------------DPSDATLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      ++..+.+..++..|+.+++.|+|++|+..|++++++                  +|.+..+|+++|.|+.++|+|++|+.
T Consensus         5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A            5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            455678999999999999999999999999999999                  77778999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHHhhhhhcCCCC
Q 012683          390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK-ELVFAFREAVEAGRKFHGTDKK  458 (458)
Q Consensus       390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~  458 (458)
                      +|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++ .+...+..+...+++..+++++
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~  154 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRV  154 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 8899999999999888877653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.82  E-value=2.3e-20  Score=150.86  Aligned_cols=122  Identities=19%  Similarity=0.095  Sum_probs=113.7

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chh-----HHHhHHHHHHhhCCHHHHHHHHHHHHHh-
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DAT-----LLSNRSLCWIRLGQAEHALADAKACRAL-  397 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~~-  397 (458)
                      ...+..++..|+.+++.|+|++|+..|++||+++|+       +..     +|+++|.++.++|+|++|+.+|++||++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            457889999999999999999999999999999999       433     9999999999999999999999999999 


Q ss_pred             ------CCCChHHH----HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          398 ------RPDWPKAC----YREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       398 ------~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                            +|+++.+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.+...
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence                  99999999    99999999999999999999999999999998888888887766543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=6.5e-20  Score=143.46  Aligned_cols=104  Identities=35%  Similarity=0.481  Sum_probs=81.5

Q ss_pred             hcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683           51 IKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (458)
Q Consensus        51 ~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  130 (458)
                      .+|.+|.||||+|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            4567788888888888888888888876 778888888888888888888888888888888888887777788888888


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCC
Q 012683          131 AGIGNIELLTYLLSKGAEVDSESDA  155 (458)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~  155 (458)
                      +..++.+++++|+++|++++..+..
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~  107 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWG  107 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcc
Confidence            8777777777777777777654443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.6e-18  Score=137.85  Aligned_cols=118  Identities=28%  Similarity=0.363  Sum_probs=113.7

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..++.++..|..++..|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+.+|+++++++|+++.+|+.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHh
Q 012683          412 LRLLEKFDEAANAFYEGVTLD------PENKELVFAFREAVEAG  449 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~  449 (458)
                      +..+|++++|+..|+++++++      |+++.++..+..+..++
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999      99999999999887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=1.4e-18  Score=142.11  Aligned_cols=108  Identities=10%  Similarity=-0.021  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      .....++.+...|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|++|++++|+++.+|+++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            33567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcH
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~  436 (458)
                      |.++..+|++++|+.+|++++++.|+.+
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.5e-19  Score=140.12  Aligned_cols=107  Identities=38%  Similarity=0.516  Sum_probs=76.5

Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHH
Q 012683           85 TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA  163 (458)
Q Consensus        85 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~  163 (458)
                      .+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..+ ||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            356677788888888888888888888887777777777777777777777777777777777766555433 6777777


Q ss_pred             hCCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 012683          164 GHGQQEAVKVLLEHHANPNAETEDNITP  191 (458)
Q Consensus       164 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  191 (458)
                      ..++.+++++|+++|++++..+..|.+|
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            7777777777777777766666666655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.78  E-value=2.4e-18  Score=136.93  Aligned_cols=115  Identities=24%  Similarity=0.323  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh------
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP------  402 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~------  402 (458)
                      ...+.+.++++.|+.+++.|+|++|++.|++|++++|+++.+|+++|.+|.++|+|++|+.+|+++++++|++.      
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999998764      


Q ss_pred             -HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          403 -KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       403 -~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                       .+|+++|.++..+|++++|++.|++++...|+ ++....+..
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence             58899999999999999999999999998886 555444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.77  E-value=1.6e-18  Score=142.32  Aligned_cols=121  Identities=12%  Similarity=0.075  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      .+....++..|..|++.|+|++|++.|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+++.+|+++|.
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  107 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE  107 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            35566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHH-HHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          411 ALRLLEKFDEAANA-FYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       411 ~~~~~~~~~~A~~~-~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++...|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus       108 ~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          108 LLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999988776 589999999999999999988876553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=4.6e-18  Score=141.95  Aligned_cols=124  Identities=25%  Similarity=0.388  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+++|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHH--HHHHHHHHHHHhhhhhc
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKE--LVFAFREAVEAGRKFHG  454 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~  454 (458)
                      ++..+|++++|+.+|+++++++|++..  +...+..+..++++...
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988  55556666666665543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=5.3e-18  Score=131.24  Aligned_cols=98  Identities=34%  Similarity=0.406  Sum_probs=85.4

Q ss_pred             chhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 012683           44 LSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG  123 (458)
Q Consensus        44 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  123 (458)
                      ..+......+.+|.|+||+|+..|+.+++++|++. |.+++..|..|.||||+|+..|+.+++++|+++|++++..|..|
T Consensus        12 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g   90 (110)
T 2zgd_A           12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG   90 (110)
T ss_dssp             C---------CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Confidence            44555666788999999999999999999999987 99999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHH
Q 012683          124 ATALHHSAGIGNIELLTYL  142 (458)
Q Consensus       124 ~t~L~~A~~~~~~~~~~~L  142 (458)
                      .||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=1.4e-17  Score=136.27  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   97 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++..+|++++|+..|+++++++|+++........+...++.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999887766555555554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=9.2e-18  Score=136.47  Aligned_cols=124  Identities=16%  Similarity=0.133  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      .......+...|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   93 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA   93 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      .++..+|++++|+..|+++++++|+++........+...++...
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877777777666665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.74  E-value=6e-17  Score=139.62  Aligned_cols=132  Identities=23%  Similarity=0.317  Sum_probs=123.5

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----------------hHHHhHHHHHHhhCCHHHHHH
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----------------TLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      ..+...+.+..+...|..++..|+|++|+..|++++++.|.++                .+++++|.++.++|++++|+.
T Consensus        30 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3456677899999999999999999999999999999999987                899999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683          390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK  457 (458)
Q Consensus       390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  457 (458)
                      +|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.++..+++..+.++
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  177 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDK  177 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988877653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=7.3e-18  Score=130.45  Aligned_cols=91  Identities=35%  Similarity=0.501  Sum_probs=82.6

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683          182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVA  260 (458)
Q Consensus       182 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  260 (458)
                      ...+.+|.|+||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            345778899999999999999999999999999877 6799999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHhh
Q 012683          261 AARGNREAVEIL  272 (458)
Q Consensus       261 ~~~~~~~~v~~L  272 (458)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=4.8e-18  Score=139.51  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=108.1

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD  419 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  419 (458)
                      .|..+..+|++++|++.|++++...|+++..++++|.+|.++|+|++|++.|+++++++|+++.+|+.+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            57888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          420 EAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       420 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +|+..|+++++++|+++.++..++.++..+++..+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=4.7e-17  Score=142.50  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..+++.|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45677888888888899999999999998888888888899999888999999999999999999988888888998888


Q ss_pred             Hh-----------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LL-----------EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..           |++++|+..|+++++++|+++.++..++.++..+|+++++
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence            88           8899999988888888888888888888888888877653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=6.6e-17  Score=151.36  Aligned_cols=132  Identities=20%  Similarity=0.233  Sum_probs=124.8

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHH
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHAL  388 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~  388 (458)
                      ..........+..+...|..+++.|+|++|+..|++++++.|.+               ..+|+++|.|+.++|++++|+
T Consensus       137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  216 (336)
T 1p5q_A          137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI  216 (336)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34455667789999999999999999999999999999999998               599999999999999999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       389 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++
T Consensus       217 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          217 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999887765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.72  E-value=7.2e-17  Score=140.32  Aligned_cols=119  Identities=11%  Similarity=0.011  Sum_probs=113.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHh----------------HHHHHHhhCCHHHHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSN----------------RSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      .++.+..+|..++..|+|++|+..|+++++++|+++.+|+.                +|.++.++|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          397 LRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       397 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999865543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.70  E-value=8.2e-17  Score=164.47  Aligned_cols=124  Identities=16%  Similarity=0.199  Sum_probs=85.9

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..++++.++|..+.+.|++++|++.|++|++++|+++.+|+++|.+|.++|++++|+..|++|++++|+++.+|+++|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34566667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +..+|++++|++.|+++++++|++..++.+++.++..+|+++++
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            77777777777777777777777777777777776666665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.70  E-value=1.6e-16  Score=127.98  Aligned_cols=124  Identities=28%  Similarity=0.384  Sum_probs=116.6

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhhhcCC
Q 012683          413 RLLEKFDEAANAFYEGVTLDPE-----NKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      ...|++++|+..|++++.++|+     +..+...+..+..+.....+..
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e~~  136 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEER  136 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998     8889999999888776655543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.70  E-value=1.4e-16  Score=125.41  Aligned_cols=103  Identities=12%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..++..|..+++.|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++|++++|+++.+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHH
Q 012683          415 LEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      .|++++|+..|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999998754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.69  E-value=1.2e-16  Score=156.15  Aligned_cols=133  Identities=22%  Similarity=0.346  Sum_probs=120.8

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHH
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHAL  388 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~  388 (458)
                      ..........+..+..+|..+++.|+|++|+..|++|+++.|.+               ..+|+++|.||.++|+|++|+
T Consensus       258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34456667889999999999999999999999999999999998               699999999999999999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       389 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      .+|++|++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++..+++
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998876543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.69  E-value=7.1e-16  Score=122.51  Aligned_cols=125  Identities=29%  Similarity=0.421  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      +.....+..+...|..++..|+|++|+..|+++++..|.++.+++.+|.++...|++++|+..+.++++++|+++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34457788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      +|.++...|++++|+..|+++++.+|++..++..++.++..+++.
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999988765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.69  E-value=1.7e-16  Score=150.24  Aligned_cols=131  Identities=18%  Similarity=0.316  Sum_probs=123.7

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc----------------cCCCchhHHHhHHHHHHhhCCHHHHHH
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID----------------FDPSDATLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      ..+.....+..+...|..+++.|+|++|+..|+++++                ++|.+..+|+++|.|+.++|++++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            3566778899999999999999999999999999999                778889999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      +|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.++..+++..+++
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988876654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.68  E-value=3.1e-16  Score=125.19  Aligned_cols=119  Identities=32%  Similarity=0.532  Sum_probs=114.8

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ....++...|..++..|+|++|+..|+++++.+|.+..+++++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +...|++++|+..|+++++.+|++..++..++.++..++
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999988765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=1.3e-15  Score=118.71  Aligned_cols=115  Identities=30%  Similarity=0.525  Sum_probs=110.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      ...|++++|+..|+++++.+|+++.++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999888753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=4e-16  Score=159.43  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=118.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +.++.++|..+.+.|++++|++.|++|++++|+++.+|+++|.++..+|++++|++.|++|++++|+++.+|+++|.++.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            57799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+|++++|++.|+++++++|++..++.+++.++..++++.++
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999999999999999999999887764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.66  E-value=2.5e-15  Score=125.01  Aligned_cols=127  Identities=31%  Similarity=0.472  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      ....+.+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..++++++++|.++.+++.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH--HHHhhhhhc
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA--VEAGRKFHG  454 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~  454 (458)
                      +|.++...|++++|+..|+++++++|++..++..++.+  +...+++.+
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~  135 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER  135 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988666666  555555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.66  E-value=3.9e-16  Score=125.78  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=96.0

Q ss_pred             hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA----------EHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      +.+.|++|+..|+++++++|+++.+|+++|.++..++++          ++|+..|++|++++|+++.+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            557899999999999999999999999999999999876          5999999999999999999999999999988


Q ss_pred             h-----------hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          416 E-----------KFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       416 ~-----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      |           +|++|+++|++|++++|++..++..+..+.+.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            5           99999999999999999999998888776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.66  E-value=6.4e-16  Score=135.22  Aligned_cols=121  Identities=19%  Similarity=0.189  Sum_probs=73.2

Q ss_pred             HHHHHHhhhHHHhh-----------ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683          334 AAEAKARGDEAFKQ-----------KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       334 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      +..+...|..+...           |++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++ +++
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~  151 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP  151 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence            34455566666666           666666666666666666666666666666666666666666666666666 666


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+++.+|.++...|++++|+..|+++++++|+++.++..++.++..+|+.+++
T Consensus       152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            66666666666666666666666666666666666666666666666655544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=5.9e-16  Score=146.81  Aligned_cols=124  Identities=10%  Similarity=-0.002  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ...+..+...|..+...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|++|++++|+++.+|+++|
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g  173 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            35567788888888888888888888888888888888888888888888886 88888888888888888888888888


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .++..+|++++|+.+|+++++++|++..++.+++.++..++++++
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHH
Confidence            888888888888888888888888888888888888888877654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.65  E-value=1.2e-16  Score=130.74  Aligned_cols=103  Identities=11%  Similarity=-0.023  Sum_probs=98.5

Q ss_pred             HHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                      +-..|+++++++|+++.+++++|.++.+.|++++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|+++++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          433 PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       433 p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      |+++.++++++.++..+|+++++
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA  123 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKA  123 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999988765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.65  E-value=1.5e-15  Score=133.76  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=114.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ++.++..|..++..|+|++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            36799999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcH-------HHHHHHHHHHHHhhhhhcC
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENK-------ELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..+|++++|+..|+++++++|+++       .++..++.++..+++++++
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  136 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA  136 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence            999999999999999999999999       6688888888877776543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=2.4e-15  Score=127.72  Aligned_cols=123  Identities=18%  Similarity=0.250  Sum_probs=93.1

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---------------
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL---------------  397 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------------  397 (458)
                      .+..+...|..++..|+|++|++.|+++++++|+++.+++++|.++.++|++++|+..+.+++..               
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888877777777666666554               


Q ss_pred             -------------------CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          398 -------------------RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       398 -------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                                         +|+++.+++.+|.++..+|++++|++.|+++++++|+++.++..++.++.++++++++
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence                               5555666666777777777777777777777777777777777777777777766543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.64  E-value=5.9e-16  Score=144.95  Aligned_cols=129  Identities=23%  Similarity=0.318  Sum_probs=101.5

Q ss_pred             CCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----------------hHHHhHHHHHHhhCCHHH
Q 012683          324 PEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----------------TLLSNRSLCWIRLGQAEH  386 (458)
Q Consensus       324 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~  386 (458)
                      ....++..+.+..++..|+.+++.|+|++|+..|++++++.|.+.                 .+|+++|.|+.++|+|++
T Consensus       169 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~  248 (338)
T 2if4_A          169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE  248 (338)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            344467778899999999999999999999999999999999987                 499999999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      |+.+|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+++.++..++.+....+..
T Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999886655443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=4e-15  Score=121.14  Aligned_cols=116  Identities=32%  Similarity=0.427  Sum_probs=110.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ..+..+...|..++..|+|++|+..|+++++..|++   ..+++++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            456789999999999999999999999999999998   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      |.++...|++++|+..|+++++++|++..++..+..+..
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999999999988877743

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.63  E-value=3.5e-15  Score=118.66  Aligned_cols=117  Identities=15%  Similarity=0.035  Sum_probs=107.0

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYRE  408 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~  408 (458)
                      +.++..|..++..|+|++|+..|+++++..|+++   .+++.+|.++...|++++|+..|+++++.+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3467899999999999999999999999999988   799999999999999999999999999999999   8999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      |.++..+|++++|+..|+++++..|+++.+......+....++
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999888777666554433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.62  E-value=5.8e-15  Score=117.24  Aligned_cols=121  Identities=20%  Similarity=0.322  Sum_probs=113.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------hHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------PKA  404 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~  404 (458)
                      +.++.+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..+++++.+.|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4577899999999999999999999999999999999999999999999999999999999999999887       999


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ++.+|.++...|++++|+..|++++...| ++.....++.+...+++..
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998 6899999999988877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=1.7e-15  Score=143.72  Aligned_cols=118  Identities=9%  Similarity=-0.041  Sum_probs=112.7

Q ss_pred             HHHHHHHhhhHHHhhcc-HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKD-YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ....+..+|..+...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+..|++|++++|+++.+|+++|.+
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~  209 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV  209 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence            35778999999999996 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +..+|++++|+.+|+++++++|++..++..++.++..++
T Consensus       210 ~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999998843

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.61  E-value=1.9e-14  Score=113.13  Aligned_cols=117  Identities=26%  Similarity=0.375  Sum_probs=112.2

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+..+...|..++..|++++|+..|+++++..|.+..+++.+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      ...|++++|+..|+++++.+|+++.++..++.++...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999987764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.59  E-value=2e-15  Score=118.04  Aligned_cols=108  Identities=13%  Similarity=0.024  Sum_probs=94.9

Q ss_pred             hhccHHHHHHHHHHhhcc---CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683          346 KQKDYLMAVDAYTQAIDF---DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAA  422 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~  422 (458)
                      ..|+|++|+..|++++++   +|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            358999999999999999   68999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          423 NAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ..|++++...|+++........+....+..+
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~  112 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADKLD  112 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988776666655444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.59  E-value=1.9e-14  Score=122.07  Aligned_cols=104  Identities=19%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..+...+++++|+..+.+++.+.|.+..++..+|.++.++|++++|++.|+++++++|+++.+|+++|.++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            45577788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHH
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      .+|++++|++.|+++++++|+++.
T Consensus       153 ~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          153 GKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999998754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.59  E-value=3.1e-15  Score=146.58  Aligned_cols=125  Identities=32%  Similarity=0.483  Sum_probs=117.7

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +.++.+...|..+++.|+|++|++.|++|++++|+++.+|+++|.++.++|++++|+..|++|++++|+++.+|+++|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            55777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH--HHHhhhhhcCC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREA--VEAGRKFHGTD  456 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~~~  456 (458)
                      +..+|++++|++.|+++++++|++..++..++.+  +...++++++.
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~  130 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  130 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998  66667776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=2.2e-14  Score=126.27  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=112.9

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-------HHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-------KACYR  407 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~  407 (458)
                      ..+...|..++..|+|++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++       .+|+.
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  122 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLK  122 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            45677999999999999999999999999999999999999999999999999999999999999999       77999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHHHHHHHHHHhhhh
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPE--NKELVFAFREAVEAGRKF  452 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~  452 (458)
                      +|.++...|++++|++.|+++++++|+  +..++..++.++..+++.
T Consensus       123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          123 EGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999  999999999999887765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.58  E-value=6e-15  Score=116.93  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=91.3

Q ss_pred             HHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          358 TQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       358 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      .+...++|+.+..+.++|.++++.|+|++|+..|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..
T Consensus         3 ar~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcC
Q 012683          438 LVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       438 ~~~~l~~~~~~~~~~~~~  455 (458)
                      ++..++.++..+++++++
T Consensus        83 a~~~lg~~~~~~~~~~~A  100 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKA  100 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHH
Confidence            999999999999987764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.56  E-value=9.6e-14  Score=120.44  Aligned_cols=109  Identities=17%  Similarity=0.127  Sum_probs=96.0

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL-  415 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-  415 (458)
                      ....|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.+|+++|.+++.. 
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            4559999999999999999999999999999999999999999999999999999999999999999998888877544 


Q ss_pred             ----------------------------------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          416 ----------------------------------EKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       416 ----------------------------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                                                        |+|++|+.+|+++++++|+.. ....+..+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~  200 (208)
T 3urz_A          137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence                                              458899999999999999743 444455543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.55  E-value=5.6e-14  Score=122.15  Aligned_cols=121  Identities=18%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      .++..++..|..++..|+|++|+..|++++  +| ++.+++++|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            456678999999999999999999999996  33 788999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcH----------------HHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENK----------------ELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...|++++|+..|++++++.|++.                .++..++.++..+++++++
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  140 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  140 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999888776                9999999999998887654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.55  E-value=7.1e-15  Score=120.11  Aligned_cols=101  Identities=14%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683          355 DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       355 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  434 (458)
                      ..|+++++++|++..+++++|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhhhhcC
Q 012683          435 NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       435 ~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++.+++.++.++..+|+++++
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A  108 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEA  108 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHH
Confidence            999999999999999987764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.54  E-value=3.1e-14  Score=129.68  Aligned_cols=102  Identities=31%  Similarity=0.463  Sum_probs=99.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..++..|+|++|+..|+++++.+|+++.+|+++|.++.++|++++|+.++++|++++|+++.+++++|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCc
Q 012683          414 LLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      .+|++++|+..|+++++++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999998866

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.53  E-value=6.6e-14  Score=126.00  Aligned_cols=123  Identities=14%  Similarity=0.111  Sum_probs=112.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACY  406 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~  406 (458)
                      .++.++..|..+++.|+|++|+..|+++++..|.+   +.+++.+|.++.++|++++|+..|++++++.|++   +.+++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            36789999999999999999999999999999998   8999999999999999999999999999998854   67899


Q ss_pred             HHHHHHHH--------hhhHHHHHHHHHHhhccCCCcHHHH-----------------HHHHHHHHHhhhhhcC
Q 012683          407 REGAALRL--------LEKFDEAANAFYEGVTLDPENKELV-----------------FAFREAVEAGRKFHGT  455 (458)
Q Consensus       407 ~~a~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~  455 (458)
                      .+|.++..        .|++++|+..|+++++.+|+++.+.                 +.++.++...+++.++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            99999999        9999999999999999999987666                 7778888888776543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.53  E-value=1.1e-13  Score=110.16  Aligned_cols=121  Identities=23%  Similarity=0.354  Sum_probs=114.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      +.+...|..++..|++++|+..|+++++..|.+..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .|++++|+..|++++...|++..++..++.++...++..++
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence            99999999999999999999999999999999888776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.51  E-value=2.5e-14  Score=146.61  Aligned_cols=120  Identities=13%  Similarity=-0.016  Sum_probs=93.0

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      +.+..+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++|++++|+++.+|+++|.++..
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL  513 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45677777777777888888888888877777777777888777777888888888888877777777777777777777


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +|++++ ++.|+++++++|++..++++++.++.++++++++
T Consensus       514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A  553 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA  553 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence            777777 7777777777777777777777777777766543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.50  E-value=1.1e-13  Score=139.33  Aligned_cols=124  Identities=14%  Similarity=0.078  Sum_probs=117.8

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+...|..++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|+++.+++.+|.
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   99 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH   99 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh---hhhhc
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG---RKFHG  454 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---~~~~~  454 (458)
                      ++...|++++|++.|+++++++|++..++..++.++..+   ++.++
T Consensus       100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~  146 (568)
T 2vsy_A          100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV  146 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence            999999999999999999999999999999999999998   66554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=2.7e-13  Score=114.37  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..++..|++++|+..|+++++..|.++.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ..|++++|+..|+++++..|++..++..++.++...++..+
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence            77777777777777777777777777777777777766554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.50  E-value=7.2e-14  Score=107.52  Aligned_cols=101  Identities=19%  Similarity=0.166  Sum_probs=96.8

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAALR  413 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~  413 (458)
                      .+...|..++..|+|++|+..|++++++.|.+..+++++|.++..+|++++|+..++++++++|.  ++.+++.+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             Hh-hhHHHHHHHHHHhhccCCCcH
Q 012683          414 LL-EKFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       414 ~~-~~~~~A~~~~~~a~~~~p~~~  436 (458)
                      .+ |++++|++.+++++...|+++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHhCCHHHHHHHHHHHhhcccCCC
Confidence            99 999999999999999998753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=3.4e-13  Score=113.81  Aligned_cols=123  Identities=19%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..++..|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++.+|.++.+++.+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   85 (186)
T 3as5_A            6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +...|++++|++.|++++..+|++..++..++.++...+++.+
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  128 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE  128 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH
Confidence            8888888888888888888888888888888888888777654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.50  E-value=2.8e-13  Score=114.08  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=104.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHH-HHhhCCH--HHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC-WIRLGQA--EHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      +..+...|..++..|+|++|+..|+++++++|+++.+++++|.+ +...|++  ++|+..++++++++|+++.+++.+|.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  123 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS  123 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999 8899999  99999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      ++...|++++|+..|+++++.+|++......+..+
T Consensus       124 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          124 DAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99999999999999999999999886655444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.49  E-value=5.7e-14  Score=113.86  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=94.3

Q ss_pred             HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683          355 DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       355 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  434 (458)
                      ..|+++++++|++...++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhhhhcC
Q 012683          435 NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       435 ~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++.++..++.++..+++++++
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A  105 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGA  105 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999987654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.49  E-value=1e-13  Score=116.86  Aligned_cols=128  Identities=13%  Similarity=0.066  Sum_probs=92.0

Q ss_pred             chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHH-hhCCHHHHHHHHHHHHHhCCCChHHH
Q 012683          327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWI-RLGQAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      .......+..+...|..+...|++++|+..|+++++..| ++..+..++.+.. ..++..+|+..++++++++|+++.++
T Consensus        33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~  111 (176)
T 2r5s_A           33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA  111 (176)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence            333444455566666666666666666666666666666 5544444443322 22233446677777888899999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhhhhhcC
Q 012683          406 YREGAALRLLEKFDEAANAFYEGVTLDPEN--KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       406 ~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +.+|.++...|++++|+..|+++++.+|+.  ..++..++.++..+|+.+++
T Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A          112 CELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            999999999999999999999999999875  66999999999998887643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=9.2e-14  Score=136.33  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=115.2

Q ss_pred             HHHHHhhhHHHhh---------ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh--------CCHHHHHHHHHHHHHh
Q 012683          335 AEAKARGDEAFKQ---------KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL--------GQAEHALADAKACRAL  397 (458)
Q Consensus       335 ~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~a~~~  397 (458)
                      ..+...|..++..         |+|++|+..|+++++++|+++.+|+++|.++..+        |++++|+..|++|+++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            5678888999888         9999999999999999999999999999999999        9999999999999999


Q ss_pred             CC---CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          398 RP---DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       398 ~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +|   +++.+|+++|.++...|++++|++.|+++++++|+++.++..++.++..+++.++
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99   9999999999999999999999999999999999999999999999999988654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=1.2e-13  Score=135.41  Aligned_cols=122  Identities=12%  Similarity=0.071  Sum_probs=116.3

Q ss_pred             HHHHHHHhhhHHHhhccH-HHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDY-LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      .+..+...|..++..|+| ++|+..|+++++++|+++.+|+++|.+|...|++++|+..|+++++++|+ ..+++.+|.+
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~  179 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV  179 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence            367789999999999999 99999999999999999999999999999999999999999999999999 7999999999


Q ss_pred             HHHh---------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh--------hhhhcC
Q 012683          412 LRLL---------EKFDEAANAFYEGVTLDPENKELVFAFREAVEAG--------RKFHGT  455 (458)
Q Consensus       412 ~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--------~~~~~~  455 (458)
                      +..+         |++++|+..|+++++++|++..++..++.++..+        ++++++
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            9999         9999999999999999999999999999999988        776543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.48  E-value=2.1e-13  Score=124.52  Aligned_cols=122  Identities=14%  Similarity=0.093  Sum_probs=110.1

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHH----------------------
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALAD----------------------  390 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~----------------------  390 (458)
                      ..+.+...|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..                      
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999998887644                      


Q ss_pred             ------------HHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc--HHHHHHHHHHHHHhhhhhc
Q 012683          391 ------------AKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN--KELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       391 ------------~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~  454 (458)
                                  ++++++++|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++..+++.++
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence                        555577899999999999999999999999999999999999998  8999999999999887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.6e-13  Score=120.24  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=103.1

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhc--------------------------cCCCchhHHHhHHHHHHhhCCHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAID--------------------------FDPSDATLLSNRSLCWIRLGQAEH  386 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~  386 (458)
                      .+..+...|..+...|++++|+..|+++++                          ..|.++.+++.+|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            356777788888888888888888888877                          667777888888888888888888


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      |+..|+++++++|.++.+++.+|.++...|++++|+..|+++++.+|++..++..++.++..+++..++
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888776543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=2.4e-14  Score=120.77  Aligned_cols=119  Identities=8%  Similarity=0.064  Sum_probs=106.7

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHh
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-LRLL  415 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~~~  415 (458)
                      +...+..++..|+|++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~   92 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA   92 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            344566678899999999999999999999999999999999999999999999999999999999999999999 8899


Q ss_pred             hhH--HHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          416 EKF--DEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       416 ~~~--~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      |++  ++|+..|+++++.+|++..++..++.++..++++.++
T Consensus        93 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  134 (177)
T 2e2e_A           93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA  134 (177)
T ss_dssp             TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence            999  9999999999999999999999999999998887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=4.8e-13  Score=117.54  Aligned_cols=106  Identities=14%  Similarity=0.123  Sum_probs=98.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH---HHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK---ACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~  407 (458)
                      ++.+..+|..++..|+|++|+..|+++++..|.++   .+++.+|.++.++|++++|+..|++++++.|+++.   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            56788999999999999999999999999998864   78999999999999999999999999999999875   8999


Q ss_pred             HHHHHHH------------------hhhHHHHHHHHHHhhccCCCcHHHH
Q 012683          408 EGAALRL------------------LEKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       408 ~a~~~~~------------------~~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      +|.++..                  .|++++|+..|+++++.+|+++.+.
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            9999986                  5799999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.47  E-value=7.5e-13  Score=119.57  Aligned_cols=115  Identities=17%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+...|..++..|+|++|+..|+++++++|.++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  119 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  119 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      ++...|++++|+..|+++++++|++......+..+
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999998766655544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.47  E-value=3.9e-13  Score=104.46  Aligned_cols=103  Identities=13%  Similarity=0.109  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          352 MAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       352 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      +|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--cHHHHHHHHHHHHHhhhhhc
Q 012683          432 DPE--NKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       432 ~p~--~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .|+  +......+...+..+++...
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~~~~~  107 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLAREDA  107 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhccccC
Confidence            874  56777788888887776544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.47  E-value=4e-13  Score=126.95  Aligned_cols=122  Identities=20%  Similarity=0.225  Sum_probs=117.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..++..|++++|+..|++++++.|+++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            46688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCc-----------HHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPEN-----------KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~-----------~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|+..|++++.+.|++           ..++..++.++..+|+.+++
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            9999999999999999999988           89999999999999988764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.2e-13  Score=141.61  Aligned_cols=117  Identities=12%  Similarity=-0.014  Sum_probs=110.6

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+..+..+|..++..|+|++|+..|+++++++|+++.+|+++|.++.++|++++ +..|++|++++|+++.+|+++|.++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      ..+|++++|++.|+++++++|++..++.+++.++...+
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            99999999999999999999999999999999975433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.46  E-value=2.4e-13  Score=122.78  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----PKACYREGAAL  412 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~a~~~  412 (458)
                      +...|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++ .|.+    ..+|+.+|.++
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555555555 2222    22355555555


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ...|++++|+..|+++++.+|++..++..++.++..+++++
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  125 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP  125 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence            55555555555555555555555555555555555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.46  E-value=6.9e-13  Score=117.41  Aligned_cols=122  Identities=17%  Similarity=0.159  Sum_probs=108.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..++..|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|+..|+++++.+|++..++..++.++..+++..++
T Consensus       171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            999999999999999999999999999999998888776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=9.9e-13  Score=114.77  Aligned_cols=121  Identities=15%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+..+...|..++..|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHh-hhHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHHHhhhhh
Q 012683          413 RLL-EKFDEAANAFYEGVT--LDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       413 ~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ... |++++|+..|+++++  ..|++..++..++.++...++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG  130 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence            555 555555555555555  44444555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.46  E-value=6.6e-14  Score=107.86  Aligned_cols=96  Identities=24%  Similarity=0.262  Sum_probs=87.3

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC------hHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW------PKACY  406 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~  406 (458)
                      .++.+...|..++..|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999999999998      88999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHh
Q 012683          407 REGAALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       407 ~~a~~~~~~~~~~~A~~~~~~a  428 (458)
                      .+|.++..+|++++|+..|++.
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHhHhhhHhHHHHh
Confidence            9999999999888887776543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.45  E-value=9.6e-13  Score=116.49  Aligned_cols=122  Identities=16%  Similarity=0.101  Sum_probs=116.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..++..|++++|+..|+++++..|.+..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.++.
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|+..|+++++.+|++..++..++.++...+++.++
T Consensus       137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999988877653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.45  E-value=6.3e-13  Score=118.67  Aligned_cols=114  Identities=29%  Similarity=0.384  Sum_probs=109.1

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHH
Q 012683          412 LRLLEKFDEAANAFYEGVTLD------PENKELVFAFREA  445 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~  445 (458)
                      +...|++++|+..|+++++++      |++..++..+..+
T Consensus       217 ~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          217 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999      9999988887765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.45  E-value=8.2e-13  Score=117.83  Aligned_cols=119  Identities=15%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA--LRPDWPKACYREGAAL  412 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~  412 (458)
                      ..+...|..++..|++++|++.|+++++..|.+..+++.+|.++...|++++|+..++++++  ..|.++.+++.+|.++
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555  4444555555555555


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ...|++++|+..|+++++.+|++..++..++.++..+++..
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence            55555555555555555555555555555555555444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.45  E-value=8e-13  Score=126.11  Aligned_cols=120  Identities=15%  Similarity=0.126  Sum_probs=86.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+...|..++..|++++|+..|+++++++|+++.+|+++|.++.+.|++++|+..|+++++++|+++.+++.+|.++..
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            44566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .|++++|+..|+++++.+|++..++..++.++.+.|++++
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            7777777777777777777777777777777666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.45  E-value=1.4e-12  Score=113.25  Aligned_cols=104  Identities=15%  Similarity=0.107  Sum_probs=99.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-----------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-----------  402 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-----------  402 (458)
                      +..+...|..++..|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|++++++.|.+.           
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            457899999999999999999999999999999999999999999999999999999999999988877           


Q ss_pred             -----HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          403 -----KACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       403 -----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                           .+++++|.++...|++++|+..|+++++++|++..
T Consensus       117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                 99999999999999999999999999999997654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.44  E-value=9.1e-13  Score=123.66  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=107.1

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .++.+...|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCC---CcHHHHHHHH
Q 012683          413 RLLEKFDEAANAFYEGVTLDP---ENKELVFAFR  443 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l~  443 (458)
                      ...|++++|+..|+++++.+|   ++..++..++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            999999999999999999999   8898888874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.44  E-value=7.1e-13  Score=119.22  Aligned_cols=117  Identities=16%  Similarity=0.211  Sum_probs=108.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---hhHHHhHHHHHHh--------hCCHHHHHHHHHHHHHhCCCCh
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---ATLLSNRSLCWIR--------LGQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      ...+...|..++..|+|++|+..|+++++..|++   +.+++.+|.++..        +|++++|+..|+++++..|+++
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            5778999999999999999999999999998854   6789999999999        9999999999999999999987


Q ss_pred             HHH-----------------HHHHHHHHHhhhHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHHhh
Q 012683          403 KAC-----------------YREGAALRLLEKFDEAANAFYEGVTLDPE---NKELVFAFREAVEAGR  450 (458)
Q Consensus       403 ~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~  450 (458)
                      .+.                 +.+|.++...|++++|+..|+++++..|+   .+.++..++.++..++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence            776                 89999999999999999999999999998   5789999999998773

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.44  E-value=4.6e-13  Score=126.65  Aligned_cols=122  Identities=14%  Similarity=0.147  Sum_probs=102.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      +..+...|..+...|++++|+..|++++++.|.  ++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.+
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344566788899999999999999999999999  899999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...|++++|+..|+++++++|++..++..++.++..++++.++
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999988887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.43  E-value=1e-12  Score=125.35  Aligned_cols=120  Identities=18%  Similarity=0.255  Sum_probs=80.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+...|..+...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++..
T Consensus       204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  283 (388)
T 1w3b_A          204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .|++++|+..|+++++.+|++..++..++.++...++.++
T Consensus       284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence            6666666666666666666666666666666666655543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.43  E-value=7.3e-13  Score=125.24  Aligned_cols=121  Identities=17%  Similarity=0.218  Sum_probs=113.6

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..+...|++++|+..|++++++.|+++.+|+++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCC------------cHHHHHHHHHHHHHhhhhhc
Q 012683          414 LLEKFDEAANAFYEGVTLDPE------------NKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ..|++++|+..|+++++++|+            +..++..++.++..+++.+.
T Consensus       293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  345 (365)
T 4eqf_A          293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL  345 (365)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence            999999999999999999887            36789999999998887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.43  E-value=9.1e-13  Score=115.75  Aligned_cols=122  Identities=14%  Similarity=0.068  Sum_probs=111.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh---HHHhHHHHHHh------------------hCCHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT---LLSNRSLCWIR------------------LGQAEHALADAK  392 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~  392 (458)
                      ...+...|..+++.|+|++|+..|+++++..|+++.   +++.+|.++..                  .|++++|+..|+
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            467889999999999999999999999999999875   89999999986                  578999999999


Q ss_pred             HHHHhCCCChHHH-----------------HHHHHHHHHhhhHHHHHHHHHHhhccCCCcH---HHHHHHHHHHHHhhhh
Q 012683          393 ACRALRPDWPKAC-----------------YREGAALRLLEKFDEAANAFYEGVTLDPENK---ELVFAFREAVEAGRKF  452 (458)
Q Consensus       393 ~a~~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~  452 (458)
                      ++++..|+++.++                 +.+|.++...|++++|+..|+++++..|+++   +++..++.++.++|+.
T Consensus       121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            9999999998665                 6789999999999999999999999999986   7899999999999887


Q ss_pred             hcC
Q 012683          453 HGT  455 (458)
Q Consensus       453 ~~~  455 (458)
                      +++
T Consensus       201 ~~A  203 (225)
T 2yhc_A          201 AQA  203 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.42  E-value=1.3e-12  Score=116.43  Aligned_cols=123  Identities=13%  Similarity=0.068  Sum_probs=112.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhc--cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAID--FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ....+...|..++..|++++|+..|+++++  ..|.+..+++.+|.++...|++++|+..++++++.+|.++.+++.+|.
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  183 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD  183 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            345677889999999999999999999999  888889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++...|++++|+..|+++++..|++..++..++.++...++..++
T Consensus       184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  228 (252)
T 2ho1_A          184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA  228 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence            999999999999999999999999999999999999888877654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.42  E-value=4e-12  Score=119.22  Aligned_cols=121  Identities=16%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ........|..++..|++++|+..|+++++..|+++    .++..+|.++...|++++|+..|+++++++|+++.+++.+
T Consensus       233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  312 (359)
T 3ieg_A          233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR  312 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345567789999999999999999999999999987    4577899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      |.++...|++++|+..|+++++++|+++.++..+..+...+++..
T Consensus       313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.41  E-value=2.1e-12  Score=112.66  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=71.7

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh-CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL-GQAEHALADAKACRA--LRPDWPKACYREGAAL  412 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~  412 (458)
                      .+...|..++..|++++|+..|+++++..|.+..+++.+|.++... |++++|+..++++++  ..|....+++.+|.++
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  123 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS  123 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence            4555566666666666666666666666666666666666666666 666666666666666  4444455666666666


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ...|++++|+..|+++++.+|++..++..++.++...+++.
T Consensus       124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A          124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            66666666666666666666666666666666655555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.41  E-value=1.4e-12  Score=117.68  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=112.0

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      .+..+...|..+...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|.++.+++.+|...
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999555


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      +..+++++|+..|+++++.+|++..++..++.++..+++
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            566799999999999999999999999999999998876

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.40  E-value=2e-12  Score=119.84  Aligned_cols=122  Identities=15%  Similarity=0.185  Sum_probs=116.6

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ...+...|..++..|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  251 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS  251 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCC------------cHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPE------------NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|+..|++++...|+            +..++..++.++..+++.+++
T Consensus       252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999            899999999999999887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.40  E-value=2.7e-12  Score=119.00  Aligned_cols=121  Identities=11%  Similarity=0.027  Sum_probs=116.1

Q ss_pred             HHHHHhhhHHHhhc-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQK-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       335 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ..+...|..++..| ++++|+..|+++++++|.++.+|+.+|.++...|++++|+..+++++++.|++..+++.+|.++.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  170 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG  170 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            56888999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|+..|+++++.+|++..++..++.++...+++.++
T Consensus       171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  212 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA  212 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999999999999999998887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.40  E-value=2.7e-12  Score=124.84  Aligned_cols=123  Identities=19%  Similarity=0.262  Sum_probs=109.6

Q ss_pred             CCCCchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh
Q 012683          323 LPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP  402 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  402 (458)
                      ..+........++.+...|..+++.|+|++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|+++
T Consensus        15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   94 (450)
T 2y4t_A           15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT   94 (450)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            33444455577899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH---HHHHHHHHH
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENK---ELVFAFREA  445 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~  445 (458)
                      .+++.+|.++...|++++|+..|+++++.+|++.   .++..+..+
T Consensus        95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            9999999999999999999999999999999998   777766443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=121.25  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      .+...|..++..|+|++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.+++.+|.++...
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  103 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV  103 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             h-hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          416 E-KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       416 ~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      | ++++|+..|+++++.+|++..++..++.++...+++.+
T Consensus       104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  143 (330)
T 3hym_B          104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ  143 (330)
T ss_dssp             CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence            6 66666666666666666666666666666666555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.38  E-value=3.9e-12  Score=116.29  Aligned_cols=118  Identities=9%  Similarity=-0.078  Sum_probs=72.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHH--HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRS--LCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      +.+...|..+.+.|++++|+..|+++++.+|++.......+  ..+...|++++|+..|+++++..|+++.+++.+|.++
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~  210 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH  210 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34555666666666666666666666666666543322222  1222336666666666666666666666666666666


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      ..+|++++|+..|+++++++|++++++.+++.++..+|+.
T Consensus       211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            6666666666666666666666666666666666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.9e-12  Score=102.25  Aligned_cols=91  Identities=15%  Similarity=0.085  Sum_probs=86.7

Q ss_pred             CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      |..+..|+.+|.++.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcC
Q 012683          445 AVEAGRKFHGT  455 (458)
Q Consensus       445 ~~~~~~~~~~~  455 (458)
                      ++..++++.++
T Consensus        81 ~~~~~~~~~~A   91 (126)
T 3upv_A           81 AQIAVKEYASA   91 (126)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHHhCHHHH
Confidence            99999887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.35  E-value=1.5e-11  Score=119.51  Aligned_cols=121  Identities=16%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ........|..++..|++++|+..|++++++.|.++    .++..+|.++.+.|++++|+..++++++++|+++.+|+.+
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344567779999999999999999999999999985    4889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      |.++...|++++|+..|+++++++|+++.++..++.+...+++..
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  380 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ  380 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999998877766543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.35  E-value=2.3e-12  Score=97.04  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=83.9

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT-LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE  416 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  416 (458)
                      ..+|..++..|+|++|+..|+++++.+|+++. +++++|.++..+|++++|+..|+++++++|+++.+++.        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            56889999999999999999999999999999 99999999999999999999999999999999998855        8


Q ss_pred             hHHHHHHHHHHhhccCCCcH
Q 012683          417 KFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       417 ~~~~A~~~~~~a~~~~p~~~  436 (458)
                      .+.+++..|++++..+|++.
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            88999999999988887653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=1.5e-12  Score=117.61  Aligned_cols=115  Identities=23%  Similarity=0.179  Sum_probs=106.2

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccC----CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFD----PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE  416 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  416 (458)
                      +..+...++|++|+..|+++++..    |.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            344456689999999999999983    5678999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          417 KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       417 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++++|+..|+++++++|++..++..++.++..++++.++
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  130 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA  130 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH
Confidence            999999999999999999999999999999998887653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.2e-11  Score=94.96  Aligned_cols=89  Identities=13%  Similarity=0.116  Sum_probs=84.4

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVF  440 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~  440 (458)
                      ++..++++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHhhhhhcC
Q 012683          441 AFREAVEAGRKFHGT  455 (458)
Q Consensus       441 ~l~~~~~~~~~~~~~  455 (458)
                      .++.++..+++...+
T Consensus        83 ~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           83 RLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHhHhhh
Confidence            999999999876654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.34  E-value=6.7e-12  Score=98.40  Aligned_cols=87  Identities=17%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ..++.+|.++.+.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcC
Q 012683          449 GRKFHGT  455 (458)
Q Consensus       449 ~~~~~~~  455 (458)
                      +++++++
T Consensus        98 ~g~~~~A  104 (121)
T 1hxi_A           98 EHNANAA  104 (121)
T ss_dssp             HHHHHHH
T ss_pred             cCCHHHH
Confidence            9987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.33  E-value=8.3e-12  Score=117.83  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE  416 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  416 (458)
                      ..|..+ ..|++++|+..|+++++..|.  ++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence            344444 889999999999999999999  89999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          417 KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       417 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++++|+..|+++++++|++..++..++.++..++++.++
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.33  E-value=4.5e-12  Score=116.02  Aligned_cols=124  Identities=10%  Similarity=-0.059  Sum_probs=109.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhh-CCHHHHHHHHHHHHHhCCCC---
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRL-GQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      ..+..+.+.|..+...|+|++|+..|++|+++.|..      ..++.++|.+|... |++++|+..|++|+++.|..   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            457789999999999999999999999999987653      46899999999996 99999999999999998854   


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH-------HHHHHHHHHHHhhhhhcC
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE-------LVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~~~~~~~  455 (458)
                         ..++.++|.++..+|+|++|+..|++++++.|++..       ++..++.++..+++..++
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence               567999999999999999999999999999987653       578888898888776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.33  E-value=2e-12  Score=102.37  Aligned_cols=89  Identities=13%  Similarity=0.034  Sum_probs=79.5

Q ss_pred             CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH-------HH
Q 012683          366 SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK-------EL  438 (458)
Q Consensus       366 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~  438 (458)
                      +.+.++.++|.++++.|+|++|+..|++|++++|+++.+|+++|.+|..+|+|++|+++|+++++++|++.       .+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999988764       46


Q ss_pred             HHHHHHHHHHhhhhhc
Q 012683          439 VFAFREAVEAGRKFHG  454 (458)
Q Consensus       439 ~~~l~~~~~~~~~~~~  454 (458)
                      +..++.++..++++.+
T Consensus        86 ~~~lg~~~~~~~~~~~  101 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSL  101 (127)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCHHH
Confidence            7777777777776654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.33  E-value=7.6e-12  Score=94.43  Aligned_cols=90  Identities=19%  Similarity=0.257  Sum_probs=78.6

Q ss_pred             cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHH
Q 012683          363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE--NKELVF  440 (458)
Q Consensus       363 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~  440 (458)
                      .+|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|++.|++++++.|.  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999998764  566677


Q ss_pred             HHHHHHHHhhhh
Q 012683          441 AFREAVEAGRKF  452 (458)
Q Consensus       441 ~l~~~~~~~~~~  452 (458)
                      .+..++...+..
T Consensus        82 ~l~~~l~~~~~~   93 (100)
T 3ma5_A           82 ELQDAKLKAEGL   93 (100)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHcccc
Confidence            777777766544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.33  E-value=4.6e-12  Score=102.28  Aligned_cols=88  Identities=16%  Similarity=0.112  Sum_probs=82.7

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHhhhHHHHHHHHHHhhcc----
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPD-------WPK-----ACYREGAALRLLEKFDEAANAFYEGVTL----  431 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~~----  431 (458)
                      ...+.++|..+.+.|+|++|+..|++|++++|+       +..     +|+++|.++..+|+|++|+.+|.+++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567889999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCcHHHH----HHHHHHHHHhhhhhcC
Q 012683          432 ---DPENKELV----FAFREAVEAGRKFHGT  455 (458)
Q Consensus       432 ---~p~~~~~~----~~l~~~~~~~~~~~~~  455 (458)
                         +|++..+|    ++++.++..+++++++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA  121 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEA  121 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHH
Confidence               99999999    9999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.32  E-value=1.7e-11  Score=97.25  Aligned_cols=101  Identities=26%  Similarity=0.397  Sum_probs=96.5

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+...|..++..|++++|+..|++++...|.++.+++.+|.++...|++++|+..++++++..|.++.+++.+|.++..
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCc
Q 012683          415 LEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      .|++++|+..|++++..+|+.
T Consensus       116 ~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          116 QGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTC
T ss_pred             HccHHHHHHHHHHHHccCCCC
Confidence            999999999999999988863

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.32  E-value=1.3e-11  Score=91.04  Aligned_cols=82  Identities=23%  Similarity=0.306  Sum_probs=48.1

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      ++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34555555656555666666666666666666655555566666666666666666666666555555555555555555


Q ss_pred             HH
Q 012683          447 EA  448 (458)
Q Consensus       447 ~~  448 (458)
                      ..
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.4e-11  Score=121.77  Aligned_cols=107  Identities=25%  Similarity=0.361  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ..+.++.++..|..+++.|+|++|+..|+++++.+| ++.+|+++|.++.++|++++|+..|+++++++|+++.+++.+|
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            356789999999999999999999999999999999 6999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          410 AALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       410 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      .++..+|++++|+..|++++..+|.+..
T Consensus        81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           81 SANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            9999999999999999999999986543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.31  E-value=4.6e-12  Score=127.40  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFY  426 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  426 (458)
                      .|++++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          427 EGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       427 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++++++|++..++..++.++..+++++++
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999887654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.31  E-value=2.3e-11  Score=89.69  Aligned_cols=85  Identities=24%  Similarity=0.314  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..++..|+|++|+..|+++++..|.++.+++++|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 012683          412 LRLLE  416 (458)
Q Consensus       412 ~~~~~  416 (458)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.30  E-value=8.9e-12  Score=95.57  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=88.2

Q ss_pred             cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC--cHHHHH
Q 012683          363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE--NKELVF  440 (458)
Q Consensus       363 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~  440 (458)
                      ++|+++.+++.+|.++...|++++|+..|+++++++|.++.+++.+|.++...|++++|+..|+++++.+|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHh-hhhhcC
Q 012683          441 AFREAVEAG-RKFHGT  455 (458)
Q Consensus       441 ~l~~~~~~~-~~~~~~  455 (458)
                      .++.++..+ ++++++
T Consensus        81 ~l~~~~~~~~~~~~~A   96 (112)
T 2kck_A           81 AKADALRYIEGKEVEA   96 (112)
T ss_dssp             HHHHHHTTCSSCSHHH
T ss_pred             HHHHHHHHHhCCHHHH
Confidence            999999888 776653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.30  E-value=1.1e-11  Score=102.98  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=88.1

Q ss_pred             cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          363 FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       363 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      ..+.++..++.+|.++...|+|++|+..|+++++++|+++.+|+++|.++..+|+|++|+..|+++++++|++..++..+
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcC
Q 012683          443 REAVEAGRKFHGT  455 (458)
Q Consensus       443 ~~~~~~~~~~~~~  455 (458)
                      +.++..++++.++
T Consensus        86 g~~~~~~g~~~~A   98 (164)
T 3sz7_A           86 GLARFDMADYKGA   98 (164)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHccCHHHH
Confidence            9999999887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.29  E-value=1.1e-11  Score=123.21  Aligned_cols=121  Identities=17%  Similarity=0.147  Sum_probs=113.6

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL  414 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  414 (458)
                      ..+...|..++..|++++|+..|+++++..|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            55788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .|++++|+..|+++++.+|+++.++..++.++...+++.++
T Consensus       357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999988877653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.29  E-value=7.7e-12  Score=113.05  Aligned_cols=124  Identities=16%  Similarity=0.139  Sum_probs=113.9

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------  397 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------  397 (458)
                      ..+..+...|..++..|+|++|+..|++++++        .|....++.++|.++...|++++|+..|.+++.+      
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            56788999999999999999999999999987        3667889999999999999999999999999998      


Q ss_pred             --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------DPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                        +|....+++.+|.++...|++++|+..|+++++.        .|....++..++.++..+++++++
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  188 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA  188 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence              5778899999999999999999999999999998        777788999999999999887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.28  E-value=2.1e-11  Score=97.54  Aligned_cols=94  Identities=10%  Similarity=0.005  Sum_probs=87.6

Q ss_pred             ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683          362 DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA  441 (458)
Q Consensus       362 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  441 (458)
                      ...|.++..++.+|.++...|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcC
Q 012683          442 FREAVEAGRKFHGT  455 (458)
Q Consensus       442 l~~~~~~~~~~~~~  455 (458)
                      ++.++..++++.++
T Consensus        83 l~~~~~~~~~~~~A   96 (137)
T 3q49_B           83 LGQCQLEMESYDEA   96 (137)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhHHHH
Confidence            99999999887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.28  E-value=4.7e-11  Score=116.87  Aligned_cols=122  Identities=11%  Similarity=0.088  Sum_probs=106.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhcc---------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDF---------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR------  398 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------  398 (458)
                      +..+...|.++...|+|++|++.|++|+++         +|.....|.++|.+|..+|++++|+.++++++++.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            455778999999999999999999999986         56667889999999999999999999999999873      


Q ss_pred             --CCChHHHHHHHHHHHHh--hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          399 --PDWPKACYREGAALRLL--EKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       399 --p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                        +..+.++..+|.++...  ++|++|+++|+++++++|++++++..++.+...++...+.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~  191 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS  191 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH
Confidence              45678899999888765  4799999999999999999999999999998877665443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.27  E-value=1.6e-11  Score=113.67  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=108.8

Q ss_pred             HHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683          343 EAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAA  422 (458)
Q Consensus       343 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~  422 (458)
                      .+...|++++|+..|+++++..|.++.+++.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          423 NAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|+++++.+|++..++..++.++..++++.++
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            999999999999999999999999998887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.26  E-value=2.7e-11  Score=120.46  Aligned_cols=127  Identities=18%  Similarity=0.245  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      ......+..+...|..++..|++++|+..|+++++.+|+ +.+++.+|.++...|++++|+..|+++++++|+++.+++.
T Consensus       237 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  315 (537)
T 3fp2_A          237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYH  315 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Confidence            344566788999999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +|.++...|++++|+..|+++++.+|++..++..++.++..++++.++
T Consensus       316 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999998887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=7.3e-11  Score=110.20  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+.+.|..+++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|++|++++|++..+++.+|.
T Consensus       193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~  272 (336)
T 1p5q_A          193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            34478899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHH-HHHHHhhc
Q 012683          411 ALRLLEKFDEAA-NAFYEGVT  430 (458)
Q Consensus       411 ~~~~~~~~~~A~-~~~~~a~~  430 (458)
                      ++..+|++++|. ..|++.+.
T Consensus       273 ~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999995 46666653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=6.2e-11  Score=119.61  Aligned_cols=122  Identities=11%  Similarity=-0.017  Sum_probs=116.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..+.+.|++++|++.|++++++.|.+..+|+.+|.++.+.|++++|++.|+++++..|+++.+|+.+|.++.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|++.|+++++.+|+++.++..++.++.+.|+.+++
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            999999999999999999999999999999999998887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=4.4e-11  Score=110.29  Aligned_cols=119  Identities=13%  Similarity=-0.015  Sum_probs=80.6

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT-LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ..+...|..+...|++++|+..|++++++.|.++. +|.++|.++.+.|++++|+..|++|++.+|....+|...+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  179 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34666677777777777777777777777777665 67777777777777777777777777777766666665555433


Q ss_pred             H-hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          414 L-LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       414 ~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      . .|++++|+..|+++++.+|+++.++..++.++..+|+..
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            2 567777777777777777777777766666666555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.22  E-value=8.7e-11  Score=107.42  Aligned_cols=107  Identities=18%  Similarity=0.051  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhhHHHhh-ccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH-
Q 012683          332 KKAAEAKARGDEAFKQ-KDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK-  403 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-  403 (458)
                      ..+..+...|..+... |++++|+..|++|+++.|..      ..++.++|.++..+|++++|+..|++++++.|++.. 
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            4467889999999997 99999999999999998754      467999999999999999999999999999987653 


Q ss_pred             ------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHH
Q 012683          404 ------ACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL  438 (458)
Q Consensus       404 ------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  438 (458)
                            +|+++|.++..+|++++|+.+|+++++++|+....
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                  68999999999999999999999999999987654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.22  E-value=8e-11  Score=107.52  Aligned_cols=118  Identities=12%  Similarity=-0.000  Sum_probs=104.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH--H
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA--A  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~--~  411 (458)
                      +..+...|..+...|++++|++.|++     |.++.++..+|.++.++|++++|++.++++++.+|++....+..+.  .
T Consensus       101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l  175 (291)
T 3mkr_A          101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL  175 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence            34588999999999999999999998     8999999999999999999999999999999999998754444442  2


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      +...|++++|+..|+++++.+|+++.++..++.++.++|++++++
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            334589999999999999999999999999999999999987653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=3.2e-11  Score=108.96  Aligned_cols=124  Identities=18%  Similarity=0.135  Sum_probs=111.8

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------  397 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------  397 (458)
                      ..+..+...|..++..|+|++|+..|++++++        .|....++.++|.++..+|++++|+..+++++++      
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            56778999999999999999999999999998        4777899999999999999999999999999999      


Q ss_pred             --CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------------------------------------------
Q 012683          398 --RPDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------------------------------------------  431 (458)
Q Consensus       398 --~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------------------------------------------  431 (458)
                        .|....+++.+|.++...|++++|+..|++++++                                            
T Consensus       163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
T 3edt_B          163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK  242 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence              7778899999999999999999999999999975                                            


Q ss_pred             -----CCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          432 -----DPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       432 -----~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                           .|....++..++.++..++++.++
T Consensus       243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A  271 (283)
T 3edt_B          243 ACKVDSPTVNTTLRSLGALYRRQGKLEAA  271 (283)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence                 255667888899998888877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.21  E-value=9.8e-11  Score=118.16  Aligned_cols=120  Identities=15%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCC-hHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL------RPDW-PKACYR  407 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~~  407 (458)
                      ..+...|..+.+.|++++|++.|+++++..|.++.+|..+|.++.+.|++++|++.|++++++      +|+. ..+|+.
T Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~  521 (597)
T 2xpi_A          442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN  521 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence            345666777777777777777777777777777777777777777777777777777777776      5543 567777


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +|.++...|++++|++.|+++++.+|+++.++..++.++...|++++
T Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  568 (597)
T 2xpi_A          522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL  568 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence            77777777777777777777777777777777777777777666554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.19  E-value=5.5e-11  Score=117.46  Aligned_cols=119  Identities=13%  Similarity=0.095  Sum_probs=86.2

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH------HHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK------ACYREG  409 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~~a  409 (458)
                      .+...|..++..|++++|+..|+++++..|.++.+++++|.++...|++++|+..+++++.++|+++.      +++.+|
T Consensus       340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  419 (514)
T 2gw1_A          340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA  419 (514)
T ss_dssp             HHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777776644      777777


Q ss_pred             HHHHH---hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          410 AALRL---LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       410 ~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      .++..   .|++++|+..|++++..+|++..++..++.++..++++.+
T Consensus       420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  467 (514)
T 2gw1_A          420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE  467 (514)
T ss_dssp             HHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence            77777   7777777777777777777777777777777776666544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.19  E-value=2.2e-10  Score=94.67  Aligned_cols=97  Identities=20%  Similarity=0.151  Sum_probs=89.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH--HHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR--EGAA  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~--~a~~  411 (458)
                      ...+...|..++..|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|.+..++..  ++..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  126 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  126 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46688999999999999999999999999999999999999999999999999999999999999999998855  4555


Q ss_pred             HHHhhhHHHHHHHHHHhhc
Q 012683          412 LRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~  430 (458)
                      +...|++++|+..+.++..
T Consensus       127 ~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          127 IVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccchHH
Confidence            8899999999999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.18  E-value=2.2e-10  Score=104.77  Aligned_cols=125  Identities=10%  Similarity=0.056  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHH---HhCCCC
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACR---ALRPDW  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~p~~  401 (458)
                      ...+..+...|..+...|+|++|+..|++++++.+..      ..+++++|.+|..+|++++|+..|++|+   +..|++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence            3455566778899999999999999999999875543      5689999999999999999999999999   556664


Q ss_pred             h----HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhhhhhcC
Q 012683          402 P----KACYREGAALRLLEKFDEAANAFYEGVTLDPE------NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 ~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      .    .+++++|.+|..+|+|++|+.+|++++.+.++      ...++..++.++..+++.+++
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            3    68999999999999999999999999987532      278899999999999887654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.17  E-value=2.5e-10  Score=103.06  Aligned_cols=109  Identities=15%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ++.+...|..++..|++++|+..|+++++  |+++.+++++|.++..    .+++++|+..|+++++++  ++.+++.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            45566666666666666666666666666  5556666666666666    666666666666666664  566666666


Q ss_pred             HHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          410 AALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       410 ~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      .++..    .+++++|+..|+++++.  +++.++..++.++..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHc
Confidence            66666    66666666666666655  356666666666655

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.17  E-value=6.1e-11  Score=97.28  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      ...+..+...|..++..|+|++|+..|++++++.+...      .++.++|.++...|++++|+..+++++++.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            46678899999999999999999999999999866533      589999999999999999999999999886543   


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHhhhhhcC
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDP------ENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                         ..+++.+|.++...|++++|+..+++++.+.+      ....++..++.++..+++..++
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence               67899999999999999999999999997632      2256788888888888876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.17  E-value=7.2e-11  Score=112.41  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=108.0

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-  402 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-  402 (458)
                      ...+..+...|..++..|++++|+..|++|+++.+.       ...++.++|.++..+|++++|+..|++|+++.|... 
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            456788999999999999999999999999987443       346899999999999999999999999998865443 


Q ss_pred             -----HHHHHHHHHHHHhhhHHHHHHHHHHhhc-----cC-CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          403 -----KACYREGAALRLLEKFDEAANAFYEGVT-----LD-PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       403 -----~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~-p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                           .+++++|.++..+|++++|+.+|+++++     .+ |....++..++.++..+++++++
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence                 5899999999999999999999999998     56 78888999999999988887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.17  E-value=6.2e-11  Score=113.72  Aligned_cols=121  Identities=21%  Similarity=0.244  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCC
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRAL------RPD  400 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~  400 (458)
                      ...+..+...|..++..|+|++|+..|++++++.|+++    .+++.+|.++...|++++|+..+++++++      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            56788899999999999999999999999999999986    58999999999999999999999999998      677


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhhh
Q 012683          401 WPKACYREGAALRLLEKFDEAANAFYEGVTL------DPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ...+++.+|.++...|++++|+..|++++.+      .|....++..++.++..+++
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            8899999999999999999999999999988      56677899999999999888

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.16  E-value=1.7e-10  Score=91.80  Aligned_cols=104  Identities=11%  Similarity=0.067  Sum_probs=94.6

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHhhhHHHHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALR-P-DWPKACYREGAALRLLEKFDEAA  422 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~-p-~~~~~~~~~a~~~~~~~~~~~A~  422 (458)
                      +....+.+.|.+.+..+|.+..+.|++|.|+.+.+   +.++++..++.+++.+ | +..+++|++|.+++++|+|++|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34556777888888889999999999999999988   7779999999999999 7 67999999999999999999999


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          423 NAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       423 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++++.+++.+|++.++......+..++.+
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988887755

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=3.6e-10  Score=104.13  Aligned_cols=113  Identities=11%  Similarity=-0.089  Sum_probs=100.0

Q ss_pred             HHHHHHhhhHHHh-------hccH-------HHHHHHHHHhhc-cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683          334 AAEAKARGDEAFK-------QKDY-------LMAVDAYTQAID-FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR  398 (458)
Q Consensus       334 ~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  398 (458)
                      ++.+...|..+..       .|++       ++|+..|++|++ +.|++..+|.++|.++...|++++|...|+++++++
T Consensus        50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  129 (308)
T 2ond_A           50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence            4556666666653       4775       999999999999 799999999999999999999999999999999999


Q ss_pred             CCChH-HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          399 PDWPK-ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       399 p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      |.++. +|..+|.++.+.|++++|+..|+++++.+|....++...+.+.
T Consensus       130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  178 (308)
T 2ond_A          130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99987 9999999999999999999999999999999887776555543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.15  E-value=8.9e-11  Score=114.91  Aligned_cols=102  Identities=21%  Similarity=0.184  Sum_probs=92.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH--
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA--  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~--  411 (458)
                      +..+...|..+++.|+|++|++.|+++++++|+++.+++++|.+|..+|++++|++.|++|++++|++..++..++.+  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             HHHhhhHHHHHHHHH-----------HhhccCCCc
Q 012683          412 LRLLEKFDEAANAFY-----------EGVTLDPEN  435 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~-----------~a~~~~p~~  435 (458)
                      +...|++++|++.++           +++..+|+.
T Consensus       120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            899999999999999           888887754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.13  E-value=1.6e-10  Score=91.48  Aligned_cols=92  Identities=18%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683          364 DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       364 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  443 (458)
                      .|.....++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcC
Q 012683          444 EAVEAGRKFHGT  455 (458)
Q Consensus       444 ~~~~~~~~~~~~  455 (458)
                      .++..++++.++
T Consensus        92 ~~~~~~~~~~~A  103 (133)
T 2lni_A           92 AALEAMKDYTKA  103 (133)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHHhhHHHH
Confidence            999998887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=9.8e-11  Score=107.41  Aligned_cols=124  Identities=18%  Similarity=0.173  Sum_probs=112.7

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-----
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR-----  398 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----  398 (458)
                      ..+..+...|..++..|++++|+..|++++++        .|....+++++|.++...|++++|+..+++++++.     
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  146 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  146 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence            55778999999999999999999999999987        36667899999999999999999999999999884     


Q ss_pred             ---CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--------CCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          399 ---PDWPKACYREGAALRLLEKFDEAANAFYEGVTL--------DPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       399 ---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                         |....+++.+|.++...|++++|+..|++++..        .|....++..++.++..+++++++
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  214 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA  214 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence               667788999999999999999999999999998        777788999999999999887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=8.2e-11  Score=107.96  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh--
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRAL--  397 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--  397 (458)
                      +.....+..+...|..++..|+|++|+..|++++++        .|....++..+|.++...|++++|+..+++++.+  
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            334567889999999999999999999999999995        6677899999999999999999999999999988  


Q ss_pred             ------CCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          398 ------RPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD--------PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       398 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                            .|....+++.+|.++...|++++|+..|++++++.        |....++..++.++...+++.++
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  172 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV  172 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence                  46678899999999999999999999999999874        56678889999999888776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.12  E-value=3.8e-11  Score=102.98  Aligned_cols=112  Identities=7%  Similarity=-0.047  Sum_probs=95.3

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh----------------HHHHH
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP----------------KACYR  407 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~  407 (458)
                      ....++|++|.+.+....+..+.....+..+|.++...|+|++|+..|++++++.|.++                .++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            34456777777777666666666788999999999999999999999999999999987                89999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +|.++..+|+|++|+.+|+++++++|++..++..++.++..+++++++
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  141 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA  141 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999999999999999999999999887654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.11  E-value=1.6e-10  Score=95.54  Aligned_cols=89  Identities=11%  Similarity=0.023  Sum_probs=84.1

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRAL------------------RPDWPKACYREGAALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  428 (458)
                      ....+..+|..+++.|+|++|+..|++|+.+                  +|.+..+|+++|.++..+|+|++|+.+++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678899999999999999999999999999                  7788899999999999999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          429 VTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       429 ~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +.++|++..+++.++.++..+++++++
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A  116 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEA  116 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHH
Confidence            999999999999999999999987754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.11  E-value=2e-10  Score=105.00  Aligned_cols=119  Identities=10%  Similarity=0.032  Sum_probs=101.4

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-------CC
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRAL-------RP  399 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p  399 (458)
                      .+.-+...|..+...++|++|+..|++++++.+..      ..++.++|.+|..+|++++|+..|++|++.       .+
T Consensus       114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (293)
T 3u3w_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence            34556668999999999999999999999965443      337999999999999999999999999953       23


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhh
Q 012683          400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRK  451 (458)
Q Consensus       400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~  451 (458)
                      ....+|+++|.+|..+|+|++|+..+++++++.+..      ..++..++.++..+++
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            345689999999999999999999999999876433      7899999999999984

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=8.1e-10  Score=110.09  Aligned_cols=118  Identities=8%  Similarity=-0.130  Sum_probs=111.6

Q ss_pred             HHHHHHHhhhHHHhhcc----------HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC--CHHHHHHHHHHHHHhCCC
Q 012683          333 KAAEAKARGDEAFKQKD----------YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG--QAEHALADAKACRALRPD  400 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~  400 (458)
                      ...++..++..+...++          ++++++.|.++++.+|.+..+|++|+.+..+++  ++++|++.++++++++|.
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~  141 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER  141 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence            35678888888888887          999999999999999999999999999999999  779999999999999999


Q ss_pred             ChHHHHHHHHHHHHhh-hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          401 WPKACYREGAALRLLE-KFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +..+|+.++.+...+| .++++++++.++++.+|.+..+|..++.++..+.
T Consensus       142 N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~  192 (567)
T 1dce_A          142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (567)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence            9999999999999999 9999999999999999999999999999998863

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.11  E-value=4.8e-10  Score=86.51  Aligned_cols=89  Identities=17%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      .+..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|++..++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcC
Q 012683          447 EAGRKFHGT  455 (458)
Q Consensus       447 ~~~~~~~~~  455 (458)
                      ..++++.++
T Consensus        83 ~~~~~~~~A   91 (118)
T 1elw_A           83 EFLNRFEEA   91 (118)
T ss_dssp             HHTTCHHHH
T ss_pred             HHHhhHHHH
Confidence            998876653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.10  E-value=8.4e-10  Score=100.56  Aligned_cols=119  Identities=13%  Similarity=-0.058  Sum_probs=108.6

Q ss_pred             HHHHHhhhHH----Hhh---ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHH--HHHHHHHHHHHhCCCChHHH
Q 012683          335 AEAKARGDEA----FKQ---KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAE--HALADAKACRALRPDWPKAC  405 (458)
Q Consensus       335 ~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~  405 (458)
                      ..+..++..+    ...   ++++++++.+.++++.+|.+..+|++|+.+...+|+++  ++++.++++++.+|.+..+|
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW  183 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW  183 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH
Confidence            3455555555    444   78999999999999999999999999999999999999  99999999999999999999


Q ss_pred             HHHHHHHHHhhh------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          406 YREGAALRLLEK------FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       406 ~~~a~~~~~~~~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ..++.++..+++      ++++++++.+++..+|++..+++.+..++.+.++..
T Consensus       184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~  237 (306)
T 3dra_A          184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI  237 (306)
T ss_dssp             HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh
Confidence            999999999998      999999999999999999999999999999887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.10  E-value=3.9e-10  Score=102.41  Aligned_cols=91  Identities=10%  Similarity=-0.004  Sum_probs=87.2

Q ss_pred             CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHH
Q 012683          365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFRE  444 (458)
Q Consensus       365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  444 (458)
                      |.++..++.+|.++.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcC
Q 012683          445 AVEAGRKFHGT  455 (458)
Q Consensus       445 ~~~~~~~~~~~  455 (458)
                      ++..++++.++
T Consensus        81 ~~~~~g~~~~A   91 (281)
T 2c2l_A           81 CQLEMESYDEA   91 (281)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHcCCHHHH
Confidence            99999887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=3.2e-10  Score=89.46  Aligned_cols=88  Identities=17%  Similarity=0.091  Sum_probs=82.1

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHH
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP---KACYREGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFA  441 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~  441 (458)
                      +..++.+|.++...|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|+++++.+|++   +.++..
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            34688999999999999999999999999999998   899999999999999999999999999999999   899999


Q ss_pred             HHHHHHHhhhhhcC
Q 012683          442 FREAVEAGRKFHGT  455 (458)
Q Consensus       442 l~~~~~~~~~~~~~  455 (458)
                      ++.++..+++++++
T Consensus        82 la~~~~~~g~~~~A   95 (129)
T 2xev_A           82 LGLSQYGEGKNTEA   95 (129)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHH
Confidence            99999998887654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.09  E-value=5.6e-10  Score=83.69  Aligned_cols=79  Identities=22%  Similarity=0.238  Sum_probs=72.3

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH--HHHHHHHH
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPK-ACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV--FAFREAVE  447 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~l~~~~~  447 (458)
                      .+.+|.++...|++++|+..|+++++++|+++. +++.+|.++...|++++|+..|+++++++|++..++  ..+..++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999 999999999999999999999999999999999988  55666555


Q ss_pred             Hh
Q 012683          448 AG  449 (458)
Q Consensus       448 ~~  449 (458)
                      ..
T Consensus        83 ~~   84 (99)
T 2kc7_A           83 FY   84 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=3.2e-10  Score=91.63  Aligned_cols=95  Identities=16%  Similarity=0.113  Sum_probs=88.9

Q ss_pred             hccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          361 IDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       361 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      ....|.+...++.+|.++...|++++|+..|+++++++|++   ..+++.+|.++...|++++|+..|+++++.+|++..
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            34567889999999999999999999999999999999998   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcC
Q 012683          438 LVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       438 ~~~~l~~~~~~~~~~~~~  455 (458)
                      ++..++.++..++++.++
T Consensus       101 ~~~~~a~~~~~~~~~~~A  118 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQA  118 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHH
Confidence            999999999998887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.09  E-value=1.6e-10  Score=93.10  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             HHHHHHHHhhhHHHhhccH----------HHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-----------CHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDY----------LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-----------QAEHALAD  390 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~  390 (458)
                      ..++.+...|..+...+++          ++|+..|++||+++|++..+|+++|.+|..+|           ++++|++.
T Consensus        34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~  113 (158)
T 1zu2_A           34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF  113 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHH
Confidence            3467888999999888775          59999999999999999999999999999885           89999999


Q ss_pred             HHHHHHhCCCCh
Q 012683          391 AKACRALRPDWP  402 (458)
Q Consensus       391 ~~~a~~~~p~~~  402 (458)
                      |++|++++|++.
T Consensus       114 ~~kAl~l~P~~~  125 (158)
T 1zu2_A          114 FQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHCTTCH
T ss_pred             HHHHHHhCCCCH
Confidence            999999999975

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.09  E-value=6.3e-10  Score=108.37  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+.++|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+
T Consensus       315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHH-HHHhh
Q 012683          412 LRLLEKFDEAANA-FYEGV  429 (458)
Q Consensus       412 ~~~~~~~~~A~~~-~~~a~  429 (458)
                      +..++++++|... |++.+
T Consensus       395 ~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          395 QKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999998864 44433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.08  E-value=4.3e-10  Score=87.33  Aligned_cols=76  Identities=16%  Similarity=0.033  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      ...+..+...|..++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..++++++..|+++....
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4667889999999999999999999999999999999999999999999999999999999999999999987543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.08  E-value=1.9e-10  Score=98.63  Aligned_cols=123  Identities=8%  Similarity=0.020  Sum_probs=103.6

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhc------cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---CC----
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAID------FDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL---RP----  399 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~p----  399 (458)
                      .+..+...|..++..|+|++|+..|+++++      ..|....+++++|.++...|++++|+..+.+++++   .+    
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            467889999999999999999999999999      44556789999999999999999999999999998   44    


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC--Cc----HHHHHHHHHHHHHhhhhhcC
Q 012683          400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP--EN----KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ....+++++|.++...|++++|+..+++++.+.+  ++    ..++..++.++..+++++++
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence            3356789999999999999999999999986532  22    23457888888888876653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.08  E-value=3.8e-10  Score=88.84  Aligned_cols=94  Identities=16%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             ccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHH
Q 012683          362 DFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFA  441 (458)
Q Consensus       362 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  441 (458)
                      +.+|.++..++.+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcC
Q 012683          442 FREAVEAGRKFHGT  455 (458)
Q Consensus       442 l~~~~~~~~~~~~~  455 (458)
                      ++.++..+++++++
T Consensus        86 ~~~~~~~~~~~~~A   99 (131)
T 2vyi_A           86 MGLALSSLNKHVEA   99 (131)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCHHHH
Confidence            99999988877653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.08  E-value=2.3e-09  Score=97.94  Aligned_cols=125  Identities=8%  Similarity=-0.023  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      ......+...+..++..|+|++|++.|.++++..+...      ..++.+|.++...|++++|+..+.+++.+.+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            35567788999999999999999999999999877643      456789999999999999999999999876544   


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhh---ccCCCcH----HHHHHHHHHHHHhhhhhcC
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGV---TLDPENK----ELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~~~~~~~  455 (458)
                         ..+|+.+|.+|...|+|++|+..|++++   +..|++.    .++.+++.++..+++++++
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHH
Confidence               5689999999999999999999999999   4456543    6889999999998887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.07  E-value=1.7e-09  Score=107.74  Aligned_cols=116  Identities=14%  Similarity=0.031  Sum_probs=104.8

Q ss_pred             HHHHHhhhHHHhhccH-HHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC----------HHHHHHHHHHHHHhCCCChH
Q 012683          335 AEAKARGDEAFKQKDY-LMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ----------AEHALADAKACRALRPDWPK  403 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~  403 (458)
                      .+.........+.++| ++|++.|+++++++|++..+|++|+.++..+|+          +++|++.++++++.+|.+..
T Consensus        29 ~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~  108 (567)
T 1dce_A           29 QSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG  108 (567)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence            3334444445556655 678999999999999999999999999999999          99999999999999999999


Q ss_pred             HHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          404 ACYREGAALRLLE--KFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       404 ~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +|++++.++..++  ++++|++.+.++++.+|.+..+|...+.++..++
T Consensus       109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A          109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            9999999999999  7799999999999999999999999999988877

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.07  E-value=3.4e-10  Score=104.68  Aligned_cols=119  Identities=20%  Similarity=0.229  Sum_probs=106.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCCh
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRAL------RPDWP  402 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~  402 (458)
                      ....+...|..++..|+|++|+..|+++++..|.+    ..++..+|.++...|++++|+..+++++++      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            35678899999999999999999999999999998    478899999999999999999999999988      55668


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhh
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRK  451 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~  451 (458)
                      .+++.+|.++...|++++|+..|++++.+.|..      ..++..++.++..+++
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            899999999999999999999999999875533      3488889999888887

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=4.7e-10  Score=97.28  Aligned_cols=110  Identities=12%  Similarity=-0.050  Sum_probs=68.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC----CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG----QAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      +.++...|..++..+++++|+..|+++++.  .++.+++++|.+|.. +    ++++|+..|++|++  +.++.+++++|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            455666666666666666666666666654  456666666666665 5    66666666666633  45666666666


Q ss_pred             HHHHH----hhhHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHH
Q 012683          410 AALRL----LEKFDEAANAFYEGVTLDP--ENKELVFAFREAVEA  448 (458)
Q Consensus       410 ~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~  448 (458)
                      .+|..    .+++++|+.+|+++++..|  +++.++..++.++..
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            66655    5666666666666666655  236666666666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.06  E-value=2.3e-10  Score=108.88  Aligned_cols=120  Identities=13%  Similarity=0.179  Sum_probs=103.3

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhcc---CCC---chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------h
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDF---DPS---DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------P  402 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~  402 (458)
                      .++..|..++..|+|++|+..|++|+++   .++   .+.+++++|.+|..+|++++|+..+.+|+++.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3445999999999999999999999997   233   56899999999999999999999999999985433       4


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH------HHHHHHHHHHHHhhhhhcC
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENK------ELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~  455 (458)
                      .+++.+|.++..+|++++|+..|++++++.|...      .++.+++.++..+++++++
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  243 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA  243 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence            6899999999999999999999999998754332      5889999999998887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.05  E-value=1.1e-09  Score=85.40  Aligned_cols=92  Identities=23%  Similarity=0.349  Sum_probs=84.1

Q ss_pred             CCCc-hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          364 DPSD-ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       364 ~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      +|.. ..+++.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4554 788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcC
Q 012683          443 REAVEAGRKFHGT  455 (458)
Q Consensus       443 ~~~~~~~~~~~~~  455 (458)
                      +.++...+++.++
T Consensus        84 a~~~~~~~~~~~A   96 (125)
T 1na0_A           84 GNAYYKQGDYDEA   96 (125)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHhcCHHHH
Confidence            9999988876543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=1.1e-09  Score=97.67  Aligned_cols=107  Identities=11%  Similarity=-0.056  Sum_probs=94.6

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCc--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--CC-ChHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD--ATLLSNRSLCWIRLGQAEHALADAKACRALR--PD-WPKACYREGA  410 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~-~~~~~~~~a~  410 (458)
                      ..+..|..+++.++|++|+..|++++...+..  ..+++++|.++..+|++++|+..|++++.-.  |. .+.+.+++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            77899999999999999999999888764332  4589999999999999999999999998654  65 6789999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  443 (458)
                      ++..+|+.++|...|++++..+|+ +.+...|.
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            999999999999999999999999 88776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.05  E-value=1.2e-10  Score=108.71  Aligned_cols=103  Identities=15%  Similarity=0.055  Sum_probs=60.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA-LR  413 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~-~~  413 (458)
                      ..+.+.|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999998 45


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHH
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      ..+..+.+...|++++...|+++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            667888889999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=5e-10  Score=99.75  Aligned_cols=122  Identities=13%  Similarity=0.040  Sum_probs=107.5

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-CCC-hHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR-PDW-PKACYREGA  410 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~-~~~~~~~a~  410 (458)
                      .-......+..+...|+|++|.+.|+..+...|.+. +.+.+|.++.+.++|++|+..|+++.+.. |.. ..+++.+|.
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~  179 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV  179 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence            345567789999999999999999999999999999 99999999999999999999999887753 221 458999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccC--CC-cHHHHHHHHHHHHHhhhhhcC
Q 012683          411 ALRLLEKFDEAANAFYEGVTLD--PE-NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~--p~-~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ++..+|++++|+.+|++++...  |. ..++++.++.++.++|+.+++
T Consensus       180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999998654  66 678999999999999988764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=1.9e-09  Score=97.22  Aligned_cols=108  Identities=12%  Similarity=0.101  Sum_probs=59.6

Q ss_pred             HHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683          335 AEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       335 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      ..+...|..+..    .+++++|+..|+++++..  ++.+++++|.+|..    .+++++|+..|+++++.+  ++.+++
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  150 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence            344455555555    555555555555555542  45555555555555    555555555555555544  445555


Q ss_pred             HHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          407 REGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       407 ~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      .+|.++..    .+++++|+.+|+++++.  +++.++..++.++..
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            55555555    55555555555555544  234555555555554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.05  E-value=1.2e-09  Score=91.70  Aligned_cols=83  Identities=12%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhhHHHHHHHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--PKACYREGAALRLLEKFDEAANAF  425 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~  425 (458)
                      ++..+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|++  +.+++.+|.++..+|++++|+..|
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            344568999999999999999999999999999999999999999999999986  569999999999999999999999


Q ss_pred             HHhhc
Q 012683          426 YEGVT  430 (458)
Q Consensus       426 ~~a~~  430 (458)
                      ++++.
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98873

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.05  E-value=2.1e-10  Score=105.71  Aligned_cols=104  Identities=18%  Similarity=0.120  Sum_probs=83.0

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-----
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-----  401 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----  401 (458)
                      .+..+...|..+.. |+|++|+..|++|+++.|..      ..++.++|.++..+|+|++|+..|++++.+.|..     
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT  193 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence            35667778888877 88888888888888876543      4678888888888888888888888888876544     


Q ss_pred             -hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHH
Q 012683          402 -PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL  438 (458)
Q Consensus       402 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  438 (458)
                       ..+++.+|.++..+|++++|+..|++++ ++|+....
T Consensus       194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence             3477788888888888888888888888 88887643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.04  E-value=3.7e-10  Score=107.77  Aligned_cols=119  Identities=20%  Similarity=0.223  Sum_probs=107.4

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----hHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCCh
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----TLLSNRSLCWIRLGQAEHALADAKACRAL------RPDWP  402 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~  402 (458)
                      .+..+...|..++..|+|++|+..|++++++.|.++    .+++.+|.++...|++++|+..+++++.+      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            356788999999999999999999999999999884    68999999999999999999999999988      45567


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhh
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRK  451 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~  451 (458)
                      .+++.+|.++...|++++|+..|++++.+.|..      ..++..++.++..+++
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            899999999999999999999999999886643      4588899999988888

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=4.9e-10  Score=106.44  Aligned_cols=125  Identities=11%  Similarity=0.011  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC-------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC----
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS-------DATLLSNRSLCWIRLGQAEHALADAKACRALRP----  399 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----  399 (458)
                      ...+..+...|..++..|++++|+..|++|+++.+.       ...+++++|.++..+|++++|+..|.+|+++.+    
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            466788899999999999999999999999986432       246788999999999999999999999988743    


Q ss_pred             --CChHHHHHHHHHHHHhhhHHHHHHHHHHhhc-----cCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          400 --DWPKACYREGAALRLLEKFDEAANAFYEGVT-----LDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       400 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                        ....+++++|.++...|++++|+..|++++.     .+|....++..++.++..+++.+++
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  280 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA  280 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence              2246788999999999999999999999998     7888888899999999888876653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.04  E-value=2.1e-09  Score=101.52  Aligned_cols=96  Identities=22%  Similarity=0.244  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      .....+..+.+.|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHH
Q 012683          409 GAALRLLEKFDEAANA  424 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~  424 (458)
                      +.++..+++++++.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.02  E-value=1.3e-09  Score=81.90  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC--hHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--PKACYREGA  410 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~  410 (458)
                      .+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|..  ......+..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~   85 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD   85 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999998754  344444555


Q ss_pred             HHHHhh
Q 012683          411 ALRLLE  416 (458)
Q Consensus       411 ~~~~~~  416 (458)
                      .+...+
T Consensus        86 ~l~~~~   91 (100)
T 3ma5_A           86 AKLKAE   91 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            554444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.02  E-value=4.9e-10  Score=106.93  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=102.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRALRPDW----  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----  401 (458)
                      ..+..+...|..++..|+|++|+..|++++++.|....      +++++|.++..+|++++|+..+++++++.|..    
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence            45677888899999999999999999999987665443      88899999999999999999999999887765    


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhcC
Q 012683          402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~  455 (458)
                        ..+++.+|.++...|++++|+..|++++.+.+..      ..++..++.++..+|++.++
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence              6788899999999999999999999988774433      66788888888888776553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.02  E-value=6.6e-10  Score=87.47  Aligned_cols=91  Identities=10%  Similarity=0.032  Sum_probs=84.4

Q ss_pred             CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc-------HH
Q 012683          365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN-------KE  437 (458)
Q Consensus       365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~  437 (458)
                      |..+..++.+|.++...|++++|+..|.++++.+|.++.+++.+|.++...|++++|+..|++++...|++       ..
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999998877       88


Q ss_pred             HHHHHHHHHHHhhhhhcC
Q 012683          438 LVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       438 ~~~~l~~~~~~~~~~~~~  455 (458)
                      ++..++.++..++++.++
T Consensus        81 ~~~~la~~~~~~~~~~~A   98 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDA   98 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhccHHHH
Confidence            999999999988887653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.00  E-value=1.3e-09  Score=94.44  Aligned_cols=109  Identities=11%  Similarity=-0.011  Sum_probs=57.1

Q ss_pred             HHHHHhhhHHHhhc----cHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCC--CChHH
Q 012683          335 AEAKARGDEAFKQK----DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRP--DWPKA  404 (458)
Q Consensus       335 ~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p--~~~~~  404 (458)
                      .++...|..+.. +    ++++|+..|+++++  +.++.+++++|.+|..    .+++++|+..|++|++.+|  .++.+
T Consensus        51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a  127 (212)
T 3rjv_A           51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA  127 (212)
T ss_dssp             HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence            344455555554 3    55555555555533  3445555555555554    4555555555555555555  23555


Q ss_pred             HHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          405 CYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       405 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      ++++|.+|..    .+++++|+.+|+++++. |+++.+.+.++.++.
T Consensus       128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            5555555555    45555555555555554 444445555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.00  E-value=3.2e-09  Score=96.74  Aligned_cols=118  Identities=7%  Similarity=-0.137  Sum_probs=88.6

Q ss_pred             HHHHHHhhhHHHhhc--cHHHHHHHHHHhhccCCCchhHHHhHHHHH----Hhh---CCHHHHHHHHHHHHHhCCCChHH
Q 012683          334 AAEAKARGDEAFKQK--DYLMAVDAYTQAIDFDPSDATLLSNRSLCW----IRL---GQAEHALADAKACRALRPDWPKA  404 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~a~~~~p~~~~~  404 (458)
                      ..++..+|..+...+  ++++++..+.+++..+|.+..+|+.|+.+.    ..+   +++++++..++++++++|.+..+
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a  146 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV  146 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence            445667777777666  777777777777777777777777777777    556   67777777777777777777777


Q ss_pred             HHHHHHHHHHhhhHH--HHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          405 CYREGAALRLLEKFD--EAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      |+.++.+...+|.++  ++++.+.++++.+|.+-.++.....++..+++
T Consensus       147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            777777777777777  77777777777777777777777777665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.00  E-value=1.6e-09  Score=105.92  Aligned_cols=111  Identities=13%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccC--------CCchhHHHhHHHHHHhhC--CHHHHHHHHHHHHHhCCCChHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFD--------PSDATLLSNRSLCWIRLG--QAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      .+.+.|.+++..|+|++|+..|++++++.        +..+.++.++|.++.+.|  +|++|+..|++|++++|+++.++
T Consensus        96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~  175 (472)
T 4g1t_A           96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT  175 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence            34455555555555555555555555431        223445555554444433  35555555555555555555555


Q ss_pred             HHHHHHHHHhh---hHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          406 YREGAALRLLE---KFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       406 ~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      +.+|.++..++   ++++|++.|+++++++|++..++..++..+
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            55555543332   334455555555555555555554444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.00  E-value=6.9e-09  Score=95.08  Aligned_cols=116  Identities=11%  Similarity=0.027  Sum_probs=106.1

Q ss_pred             HHHHHHhhhHHHhhc--cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQK--DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..++..+...+  .|+++++.+.++++.+|.+..+|++++.+....|+ ++++++++++++..+|.+..+|..++.
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~  187 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC  187 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            567888888888777  59999999999999999999999999999999999 699999999999999999999999999


Q ss_pred             HHHHh--------------hhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          411 ALRLL--------------EKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       411 ~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      ++..+              +.++++++++.+++..+|++..+|+.+..++...
T Consensus       188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            99988              7899999999999999999999998776665443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.98  E-value=4.6e-10  Score=107.58  Aligned_cols=125  Identities=19%  Similarity=0.222  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      ...+..+...|..++..|+|++|+..|++++++.+....      +++++|.++...|++++|+..+++++.+.|..   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            345678899999999999999999999999998776544      89999999999999999999999999988754   


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhcC
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~  455 (458)
                         ..+++.+|.++...|++++|+..|++++.+.+..      ..++..++.++..+++..++
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence               7889999999999999999999999999875432      45888899999988877653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=1.1e-09  Score=100.88  Aligned_cols=123  Identities=15%  Similarity=-0.020  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      ...+..+.+.|..+...|+|++|+..|++++++.+.      ...++.++|.+|.. |++++|+..|++|+.+.|..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            456788999999999999999999999999988432      25789999999999 99999999999999997754   


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhc
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~  454 (458)
                         ..++.++|.++..+|+|++|+..|++++.+.|++      ..++..++.++..+++..+
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence               5789999999999999999999999999886543      3467777778777776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.97  E-value=2.1e-09  Score=104.64  Aligned_cols=128  Identities=16%  Similarity=0.091  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL---  397 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---  397 (458)
                      ...+.++...+.+..+..+|+|++|+..|++++++     .|++   ...+.++|.+|..+|+|++|+..+++++++   
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~  383 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK  383 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            44556777888888899999999999999999975     3444   578999999999999999999999999976   


Q ss_pred             --CCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCcH---HHHHHHHHHHHHhhhhhcCC
Q 012683          398 --RPDW---PKACYREGAALRLLEKFDEAANAFYEGVTL-----DPENK---ELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       398 --~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~  456 (458)
                        .|++   ...++++|.+|..+|+|++|+..|++|+++     .|+++   +....+..++..++++.+++
T Consensus       384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4555   467899999999999999999999999863     56665   44567777777777665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.96  E-value=1.2e-08  Score=93.86  Aligned_cols=110  Identities=12%  Similarity=-0.019  Sum_probs=102.6

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-h-hHHH
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALRLL-E-KFDE  420 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-~-~~~~  420 (458)
                      ....+..++|++.+.++|.++|++..+|+.|+.+...++ .+++++..+++++..+|.+..+|+.++.++..+ + ++++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~  143 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS  143 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence            334455578999999999999999999999999999999 599999999999999999999999999999998 8 9999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      +++.+.++++.+|.+..++....-++.+++...
T Consensus       144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999988765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.96  E-value=6.2e-09  Score=76.64  Aligned_cols=74  Identities=15%  Similarity=0.076  Sum_probs=68.6

Q ss_pred             CCCchhHHHhHHHHHHhhCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          364 DPSDATLLSNRSLCWIRLGQ---AEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       364 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      +|+++.+++.+|.+++..++   .++|...+++|++++|+++++++.+|.+++..|+|++|+..|+++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68899999999999986665   799999999999999999999999999999999999999999999999988543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.96  E-value=4e-09  Score=96.31  Aligned_cols=124  Identities=7%  Similarity=-0.033  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh------HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT------LLSNRSLCWIRLGQAEHALADAKACRALRPDW----  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----  401 (458)
                      .....+.+.+..++..|+|++|+..|+++++..+..+.      .+..+|.++...+++++|+..+++|+.+.+..    
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~  152 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence            44556777889999999999999999999998776544      34468999999999999999999999975443    


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHhhc-------cCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          402 --PKACYREGAALRLLEKFDEAANAFYEGVT-------LDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                        ..++.++|.+|..+|+|++|+..|+++++       ..+....++.+++.++..++++.++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence              34799999999999999999999999994       2333456889999999999887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.95  E-value=1.2e-09  Score=100.86  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=108.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALRPDW----  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----  401 (458)
                      ..+..+...|..++..|++++|+..|++++++.+...      .+++++|.++...|++++|+..+++++.+.|..    
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence            4567889999999999999999999999998865543      389999999999999999999999999987765    


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc------HHHHHHHHHHHHHhhhhhcC
Q 012683          402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDPEN------KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~  455 (458)
                        ..+++.+|.++...|++++|+..|++++...+..      ..++..++.++..+|++.++
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence              7889999999999999999999999999875433      45788899999988887654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.95  E-value=4.2e-09  Score=96.97  Aligned_cols=119  Identities=8%  Similarity=-0.113  Sum_probs=109.5

Q ss_pred             HHHHHHhhhHHHhh-c-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHH--------HHHHHHHHHHHhCCCChH
Q 012683          334 AAEAKARGDEAFKQ-K-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAE--------HALADAKACRALRPDWPK  403 (458)
Q Consensus       334 ~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~  403 (458)
                      ...+..++..+... + +++++++.+.++++.+|.+..+|++|+.+...+++++        ++++.++++++.+|.+..
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S  202 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS  202 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence            46677888888776 6 8999999999999999999999999999999999988        999999999999999999


Q ss_pred             HHHHHHHHHHHhhh-------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          404 ACYREGAALRLLEK-------FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       404 ~~~~~a~~~~~~~~-------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      +|..++.++..+++       ++++++++++++..+|++..+++.+..++.+.++.
T Consensus       203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999987       89999999999999999999999999998877654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.94  E-value=1.3e-08  Score=93.31  Aligned_cols=116  Identities=9%  Similarity=-0.125  Sum_probs=105.2

Q ss_pred             HHHHHHhhhHHHhhcc----------HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC--HHHHHHHHHHHHHhCCCC
Q 012683          334 AAEAKARGDEAFKQKD----------YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ--AEHALADAKACRALRPDW  401 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~  401 (458)
                      ...+..++..+...+.          +++++..+.+++..+|.+..+|+.|+.+...+++  +++++..+.+++.++|.+
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN  143 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN  143 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence            3455566666554443          7899999999999999999999999999999995  899999999999999999


Q ss_pred             hHHHHHHHHHHHHhhh-HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          402 PKACYREGAALRLLEK-FDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      ..+|..++.+...+|. ++++++++.++++.+|.+..+|..++.++..+
T Consensus       144 y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          144 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999 69999999999999999999999999998877

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.93  E-value=2.7e-09  Score=101.25  Aligned_cols=102  Identities=16%  Similarity=0.070  Sum_probs=93.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHH-----hCCC
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRA-----LRPD  400 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~p~  400 (458)
                      ..+..+...|..+...|+|++|++.|++++++.+.      ...+++++|.+|..+|++++|+..+++++.     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            56788999999999999999999999999997431      346899999999999999999999999999     7888


Q ss_pred             ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          401 WPKACYREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       401 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      .+.+++.+|.++..+|++++|+..+++++.+.+
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998743

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=3.8e-09  Score=96.18  Aligned_cols=96  Identities=17%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW--PKACYREGAAL  412 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~  412 (458)
                      ......+..+...+++++|+..|+++++.+|+++.+++++|.++...|++++|+..|.++++++|++  ..++.++|.++
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence            3455666778888999999999999999999999999999999999999999999999999999999  89999999999


Q ss_pred             HHhhhHHHHHHHHHHhhc
Q 012683          413 RLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~  430 (458)
                      ..+|+.++|...|++++.
T Consensus       266 ~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          266 AALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHCTTCHHHHHHHHHHH
T ss_pred             HHcCCCCcHHHHHHHHHH
Confidence            999999999999999874

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.90  E-value=1.1e-08  Score=79.00  Aligned_cols=86  Identities=16%  Similarity=0.067  Sum_probs=74.5

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD--WPKACYREGAA  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~  411 (458)
                      +..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|.  +..+...+...
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999885  44555556666


Q ss_pred             HHHhhhHH
Q 012683          412 LRLLEKFD  419 (458)
Q Consensus       412 ~~~~~~~~  419 (458)
                      +..+++..
T Consensus        99 l~~l~~~~  106 (115)
T 2kat_A           99 LRRLARED  106 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcccc
Confidence            65555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.89  E-value=1.6e-08  Score=76.40  Aligned_cols=76  Identities=21%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccC-------CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFD-------PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      +++.+..|..+++.++|..|+..|++|++..       +....++.++|.|+.++|++++|+..+++|++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4677888888888888888888888888753       345677778888888888888888888888888888877777


Q ss_pred             HHH
Q 012683          407 REG  409 (458)
Q Consensus       407 ~~a  409 (458)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            766

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.89  E-value=5.2e-09  Score=85.52  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=89.6

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC------
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALRP------  399 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------  399 (458)
                      ..+..+...|..++..|+|++|+..|++++++.+..      ..+++++|.++...|++++|+..+++++++.+      
T Consensus        47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  126 (164)
T 3ro3_A           47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI  126 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence            446788999999999999999999999999876542      56899999999999999999999999998743      


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      ....+++.+|.++...|++++|++.+++++++..
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            2357889999999999999999999999987643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.86  E-value=2.4e-08  Score=75.50  Aligned_cols=86  Identities=13%  Similarity=-0.153  Sum_probs=75.0

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALR-------PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      ++.-.+.+|..+++.++|..|+..|++|++..       +..+..+..+|.+++++|+++.|+..++++++++|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35567899999999999999999999999863       45678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 012683          440 FAFREAVEAGRKF  452 (458)
Q Consensus       440 ~~l~~~~~~~~~~  452 (458)
                      .++..+...+.+.
T Consensus        84 ~n~~~~~~~~~~~   96 (104)
T 2v5f_A           84 GNLKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhc
Confidence            9888665544433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.83  E-value=1.2e-08  Score=101.42  Aligned_cols=120  Identities=12%  Similarity=-0.032  Sum_probs=97.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ...+...|..+...|++++|...|++++++.|.++ .+|.++|.++.+.|++++|...|++|++..|.....|...+.+.
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            34577788888888899999999999999888875 58888888888888888888888888888888777777766653


Q ss_pred             -HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          413 -RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       413 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                       ...|++++|...|+++++.+|+++.++..++.++..+|+..
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~  442 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  442 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHH
T ss_pred             HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHh
Confidence             45788888888888888888888888888888776666543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.81  E-value=9.6e-09  Score=87.76  Aligned_cols=112  Identities=17%  Similarity=0.170  Sum_probs=90.3

Q ss_pred             HHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHhhh
Q 012683          344 AFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA------LRPDWPKACYREGAALRLLEK  417 (458)
Q Consensus       344 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~~a~~~~~~~~  417 (458)
                      ++..|+|++|.+.++......+....++..+|.++...|++++|+..+++++.      ..|....+++.+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            46789999999955554443336789999999999999999999999999999      455667899999999999999


Q ss_pred             HHHHHHHHHHhhcc---CCC----cHHHHHHHHHHHHHhhhhhcC
Q 012683          418 FDEAANAFYEGVTL---DPE----NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       418 ~~~A~~~~~~a~~~---~p~----~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +++|+..|++++.+   .++    ...++..++.++..+++++++
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  126 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA  126 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999988   442    356788899999888887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.79  E-value=3.5e-08  Score=94.45  Aligned_cols=111  Identities=10%  Similarity=-0.022  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----C
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL-----R  398 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~  398 (458)
                      ..+....+.+......|+|++|+..|++++++     .|++   ...+.++|.+|..+|+|++|+..+++++++     .
T Consensus       296 ~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  375 (433)
T 3qww_A          296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP  375 (433)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence            34455566666666678999999999999984     4554   467899999999999999999999999976     4


Q ss_pred             CCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCcHHHHHHH
Q 012683          399 PDW---PKACYREGAALRLLEKFDEAANAFYEGVTL-----DPENKELVFAF  442 (458)
Q Consensus       399 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~l  442 (458)
                      |++   ...|+++|.+|..+|+|++|+..|++|+++     .|+++......
T Consensus       376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~  427 (433)
T 3qww_A          376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK  427 (433)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            555   467899999999999999999999999874     68888766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.77  E-value=7e-08  Score=95.91  Aligned_cols=112  Identities=11%  Similarity=-0.088  Sum_probs=99.5

Q ss_pred             HHHHHHhhhHHHh-------hccHH-------HHHHHHHHhhc-cCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683          334 AAEAKARGDEAFK-------QKDYL-------MAVDAYTQAID-FDPSDATLLSNRSLCWIRLGQAEHALADAKACRALR  398 (458)
Q Consensus       334 ~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  398 (458)
                      .+.+...|..+.+       .|+++       +|+..|++|++ +.|++..+|+.+|..+.+.|++++|...|++++++.
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~  351 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  351 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence            4667788888776       68877       99999999998 899999999999999999999999999999999999


Q ss_pred             CCCh-HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q 012683          399 PDWP-KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA  445 (458)
Q Consensus       399 p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  445 (458)
                      |.++ .+|...|.++.+.|++++|++.|++|++..|.....+...+.+
T Consensus       352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  399 (530)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            9986 6999999999999999999999999999988876665544443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.76  E-value=2.6e-08  Score=94.10  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=96.3

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-------
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA------TLLSNRSLCWIRLGQAEHALADAKACRALR-------  398 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------  398 (458)
                      ..+..+...|..++..|+|++|+..|++++++.|...      .+++++|.++...|++++|+..+++++++.       
T Consensus        51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  130 (373)
T 1hz4_A           51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ  130 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            3456778888888999999999999999888765432      346788999999999999999999988874       


Q ss_pred             -CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC-----cHHHHHHHHHHHHHhhhhhc
Q 012683          399 -PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPE-----NKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       399 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-----~~~~~~~l~~~~~~~~~~~~  454 (458)
                       |....++..+|.++...|++++|+..+++++...|.     ...++..++.++...|++++
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  192 (373)
T 1hz4_A          131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  192 (373)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence             334567778899999999999999999998887664     23567778888777776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.75  E-value=1.1e-07  Score=91.06  Aligned_cols=119  Identities=13%  Similarity=0.041  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL-----  397 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----  397 (458)
                      .+.++.+......+..+|+|++|++.|++++++     .|++   ...+.++|.+|..+|+|++|+..+++++.+     
T Consensus       284 ~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l  363 (429)
T 3qwp_A          284 WKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF  363 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence            344566667777788899999999999999975     3444   468999999999999999999999999976     


Q ss_pred             CCCC---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----CCCcHHHH---HHHHHHHHHh
Q 012683          398 RPDW---PKACYREGAALRLLEKFDEAANAFYEGVTL-----DPENKELV---FAFREAVEAG  449 (458)
Q Consensus       398 ~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~---~~l~~~~~~~  449 (458)
                      .|++   ...++++|.+|..+|++++|+..|++|+++     .|+++...   .+|+.+...+
T Consensus       364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            4555   467899999999999999999999999864     67776555   4455554444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.74  E-value=7.7e-08  Score=73.57  Aligned_cols=106  Identities=10%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             hhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHhhhHHH
Q 012683          346 KQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEH---ALADAKACRALR-P-DWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~a~~~~-p-~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      .......+...|.+++..++....+-|++|.++.+......   ++..++..+.-+ | ..-+.+|.+|..++++|+|+.
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            33455667777888888888899999999999999887776   999999999987 5 577899999999999999999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          421 AANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      |+.+++..++.+|++.++......+..++.+
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998888877654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.74  E-value=7.6e-08  Score=76.93  Aligned_cols=98  Identities=9%  Similarity=-0.006  Sum_probs=86.8

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGAALRL-  414 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-  414 (458)
                      .|..+...+.+++|+..|+++.+.  .++.+.+++|.+|..    .+++++|+..|++|.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            778888888899999999999987  689999999999999    89999999999999987  689999999999999 


Q ss_pred             ---hhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683          415 ---LEKFDEAANAFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       415 ---~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  443 (458)
                         .+++++|+.+|+++.+.  +++.+...++
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               89999999999999987  4566665554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.72  E-value=5.5e-08  Score=91.86  Aligned_cols=126  Identities=13%  Similarity=-0.031  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh--
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDWP--  402 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~--  402 (458)
                      ....++.+...|..++..|++++|+..++++++..|...     .++.++|.++...|++++|...+++++.+.|...  
T Consensus        10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            345577888999999999999999999999999887653     3688999999999999999999999999866443  


Q ss_pred             ----HHHHHHHHHHHHhhhHHHHHHHHHHhhccC--------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          403 ----KACYREGAALRLLEKFDEAANAFYEGVTLD--------PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       403 ----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                          .++..+|.++...|++++|+..|++++.+.        |....++..++.++...++++++
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence                346889999999999999999999999864        34456778889998888877654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.70  E-value=1.6e-07  Score=86.27  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=83.4

Q ss_pred             HHHHHHhhhHHHhh---ccHHHHHHHHHHhhccCCCchhHHHhHHHHH--------------------------------
Q 012683          334 AAEAKARGDEAFKQ---KDYLMAVDAYTQAIDFDPSDATLLSNRSLCW--------------------------------  378 (458)
Q Consensus       334 ~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~--------------------------------  378 (458)
                      +-+++-+|..++.+   +++.+|+.+|++|++++|+++.+|..++.||                                
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            34466667777655   4568999999999999999877666544443                                


Q ss_pred             ------------HhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683          379 ------------IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       379 ------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                                  ...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|.+|+.++|..+...
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence                        3478899999999999999975 56788889999999999999999999999999876543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.62  E-value=1.6e-07  Score=75.08  Aligned_cols=94  Identities=15%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hhhHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL----LEKFDEAA  422 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~~A~  422 (458)
                      .+++++|+..|+++.+....  .+.  +|.+|...+..++|++.|++|.+.  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46899999999999998744  344  999999999999999999999987  789999999999999    89999999


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          423 NAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       423 ~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ++|+++.+.  +++.+..+++.++..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999999976  689999999999886

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.60  E-value=2.5e-07  Score=89.83  Aligned_cols=91  Identities=16%  Similarity=0.115  Sum_probs=51.5

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHH-H--HhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-----hHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLC-W--IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-----KFD  419 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-----~~~  419 (458)
                      +++++|+..|+++.   |.++.+++++|.+ +  ...+++++|+..|+++.+.  .++.+++++|.+|. .|     +++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHH
Confidence            45555555555555   5555555566555 2  3455566666666665543  25555666665555 44     666


Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          420 EAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       420 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      +|+.+|+++.   |+++.+++.++.++.
T Consensus       305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          305 AAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            6666666655   555666666665554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.59  E-value=2.3e-07  Score=81.67  Aligned_cols=86  Identities=20%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             cHHHHHHHHHHhhccCCC--chhHHHhHHHHHHhh-----CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH-hhhHH
Q 012683          349 DYLMAVDAYTQAIDFDPS--DATLLSNRSLCWIRL-----GQAEHALADAKACRALRPDW-PKACYREGAALRL-LEKFD  419 (458)
Q Consensus       349 ~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~~a~~~~~-~~~~~  419 (458)
                      ...+|...+++|++++|+  +..+|..+|..|.+.     |+.++|.+.|++|++++|+. ...++..|..+.. .|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            357889999999999999  678999999999995     99999999999999999975 9999999999988 59999


Q ss_pred             HHHHHHHHhhccCCC
Q 012683          420 EAANAFYEGVTLDPE  434 (458)
Q Consensus       420 ~A~~~~~~a~~~~p~  434 (458)
                      +|.+.+++++..+|.
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999998776

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.56  E-value=5.2e-07  Score=81.39  Aligned_cols=119  Identities=10%  Similarity=-0.109  Sum_probs=98.0

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCC--CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC------CChHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDP--SDATLLSNRSLCWIRLGQAEHALADAKACRALRP------DWPKACYRE  408 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~~  408 (458)
                      +.-.|..+...|++++|+..+.+.+..+|  .+.+++..++.+++++|+.+.|.+.+++..+.+|      +....++.-
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            46789999999999999999999999997  8899999999999999999999999999999999      344444445


Q ss_pred             HHHHHHhh--hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          409 GAALRLLE--KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       409 a~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      |.+....|  ++++|...|+++....|+.......+. +..++|++.+++
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe  231 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQ  231 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHH
Confidence            55577777  999999999999988887333222333 778888877654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.55  E-value=6.4e-07  Score=86.96  Aligned_cols=108  Identities=12%  Similarity=-0.048  Sum_probs=93.9

Q ss_pred             HHHHHHHhhhH-H--HhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-----CHHHHHHHHHHHHHhCCCChHH
Q 012683          333 KAAEAKARGDE-A--FKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-----QAEHALADAKACRALRPDWPKA  404 (458)
Q Consensus       333 ~~~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~  404 (458)
                      .+.++...|.. +  ...+++++|+..|+++.+.  .++.+++++|.+|. .|     ++++|+..|++|.   |.++.+
T Consensus       247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            34567777877 4  5679999999999999975  48999999999998 55     9999999999999   999999


Q ss_pred             HHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          405 CYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       405 ~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ++++|.+|..    ..++++|+.+|+++.+  ++++.+.+.++.++..
T Consensus       321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          321 DYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence            9999999877    3499999999999986  5678899999999874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.54  E-value=6.8e-07  Score=87.78  Aligned_cols=109  Identities=11%  Similarity=-0.034  Sum_probs=80.6

Q ss_pred             HHHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHH
Q 012683          334 AAEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       334 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      +.++...|..++.    .+++++|+..|+++.+.  .++.+++++|.+|..    .+++++|+..|+++...  .++.++
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~  150 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ  150 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            4556677777777    77778888888777764  467777777877777    67788888888877664  467777


Q ss_pred             HHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          406 YREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       406 ~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      +.+|.+|..    .+++++|+++|+++++.  +++.++..++.++..
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR  195 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence            888877776    67788888888877764  467777777777765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=1e-06  Score=86.60  Aligned_cols=109  Identities=8%  Similarity=-0.065  Sum_probs=98.4

Q ss_pred             HHHHHHhhhHHHh----hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHH
Q 012683          334 AAEAKARGDEAFK----QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKAC  405 (458)
Q Consensus       334 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~  405 (458)
                      +.++...|..+..    .+++++|+..|+++.+.  .++.+++++|.+|..    .+++++|++.|+++++.  .++.++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            4567788888888    88999999999999886  578999999999998    88999999999999986  589999


Q ss_pred             HHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          406 YREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       406 ~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      +.+|.+|..    .+++++|+.+|+++++.  +++.++..++.++..
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~  231 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYF  231 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            999999998    89999999999999875  578899999999875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.49  E-value=3.9e-07  Score=66.90  Aligned_cols=70  Identities=11%  Similarity=-0.045  Sum_probs=63.3

Q ss_pred             HHHHHHhhhHHHhhcc---HHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683          334 AAEAKARGDEAFKQKD---YLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK  403 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  403 (458)
                      ++.+...|..++-.++   .++|...++++++++|+++.+++.+|..+++.|+|++|+..++++++.+|..+.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            5677888888875555   799999999999999999999999999999999999999999999999998543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.47  E-value=7.7e-07  Score=70.72  Aligned_cols=81  Identities=12%  Similarity=-0.018  Sum_probs=71.9

Q ss_pred             HHHHHHhhhHHHhhc---cHHHHHHHHHHhhccC-C-CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          334 AAEAKARGDEAFKQK---DYLMAVDAYTQAIDFD-P-SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      .+..++.|..+.+.+   ++.+++..++..++.+ | ...+++|++|..++++|+|++|.++++++++++|++..+..-+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            467889999999987   7889999999999998 7 5689999999999999999999999999999999999988766


Q ss_pred             HHHHHH
Q 012683          409 GAALRL  414 (458)
Q Consensus       409 a~~~~~  414 (458)
                      -.+-..
T Consensus       112 ~~ie~~  117 (152)
T 1pc2_A          112 RLIDKA  117 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655533

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.33  E-value=1.4e-06  Score=84.86  Aligned_cols=101  Identities=11%  Similarity=-0.036  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL----  397 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----  397 (458)
                      ....+..+.+.|..|...|+|++|+..|++++++     .|++   ...++++|.+|..+|+|++|+..|++|+.+    
T Consensus       347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~  426 (490)
T 3n71_A          347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT  426 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            3467888999999999999999999999999975     3444   568999999999999999999999999975    


Q ss_pred             -CCCCh---HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          398 -RPDWP---KACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       398 -~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                       .|++|   +.+-.++.++..++.|++|...|+++.+
T Consensus       427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             67775   5557899999999999999999998864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.33  E-value=1.5e-06  Score=82.01  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC----------------
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP----------------  399 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----------------  399 (458)
                      ++...|..++..|.|++|...|+++        ..|..+|.|+.++|+|++|++.+++|.  +|                
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence            5666777777777777777777765        466677777777777777777777772  11                


Q ss_pred             -----------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          400 -----------DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       400 -----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                                 .+++-...+...|...|++++|+..|++++.+++.+-.+++.++.++.+.
T Consensus       194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                       12222334556788899999999999999999999999999999887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.33  E-value=7.3e-06  Score=62.69  Aligned_cols=98  Identities=8%  Similarity=-0.112  Sum_probs=82.3

Q ss_pred             HHHHHHHhhccCCCchhHHHhHHHHHHhhCCH---HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683          353 AVDAYTQAIDFDPSDATLLSNRSLCWIRLGQA---EHALADAKACRALRP-DWPKACYREGAALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       353 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  428 (458)
                      ..+.|.+-+ .....+..-|++|.++.+....   .+++..++..++.+| ..-+.+|.+|..++++|+|++|+++.+.+
T Consensus        26 l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           26 LRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             HHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            334455544 3334678999999999987754   579999999999998 45788999999999999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHHHHhhh
Q 012683          429 VTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       429 ~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++.+|++.++......+..++.+
T Consensus       105 L~~eP~N~QA~~Lk~~Ie~ki~k  127 (134)
T 3o48_A          105 FEHERNNKQVGALKSMVEDKIQK  127 (134)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999998888765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.32  E-value=5.8e-06  Score=79.47  Aligned_cols=127  Identities=3%  Similarity=-0.103  Sum_probs=85.1

Q ss_pred             chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--
Q 012683          327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIRLGQAEHALADAKACRALR--  398 (458)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--  398 (458)
                      ........+++...|..|+..|+|++|++.|++++...+..      ..++.+++.++...|++++|+..+++++...  
T Consensus        48 ~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  127 (434)
T 4b4t_Q           48 DKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKR  127 (434)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            34455667789999999999999999999999988764432      2345556666666677777777777766542  


Q ss_pred             ----CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc------CCCcHHHHHHHHHHHHHhhhhh
Q 012683          399 ----PDWPKACYREGAALRLLEKFDEAANAFYEGVTL------DPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       399 ----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                          +....++.++|.++...|+|++|+..+++++..      .|...+++..+++++..++++.
T Consensus       128 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
T 4b4t_Q          128 EKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA  192 (434)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             hCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH
Confidence                233556667777777777777777776666543      2233455666666666665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.30  E-value=9.5e-06  Score=62.92  Aligned_cols=87  Identities=9%  Similarity=-0.074  Sum_probs=77.8

Q ss_pred             CCchhHHHhHHHHHHhhCCH---HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683          365 PSDATLLSNRSLCWIRLGQA---EHALADAKACRALRP-DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF  440 (458)
Q Consensus       365 p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  440 (458)
                      ......-|++|.++.+....   .+++..++..++-.| ..-+.+|.+|..++++|+|++|+++.+..|+.+|++.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            56788999999999997754   589999999999998 46788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 012683          441 AFREAVEAGRK  451 (458)
Q Consensus       441 ~l~~~~~~~~~  451 (458)
                      ....+..++.+
T Consensus       116 Lk~~Ie~~i~k  126 (144)
T 1y8m_A          116 LKSMVEDKIQK  126 (144)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98888887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.25  E-value=5.1e-06  Score=88.10  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=94.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC---------------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP---------------  399 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---------------  399 (458)
                      ..+...|..++..|+|++|+.+|+++        ..|..+|.++.++|++++|++.+++|...++               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            45778999999999999999999996        5899999999999999999999999966554               


Q ss_pred             ----------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          400 ----------DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       400 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                                .+++.+..++..|...|.|++|+..+++++.++|.+...+..++.++.+-
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                      24556667888899999999999999999999999999999999887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.20  E-value=4.7e-06  Score=88.34  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             hhHHHhhccHHHHHHHHHHhh--------------------cc--CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683          341 GDEAFKQKDYLMAVDAYTQAI--------------------DF--DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR  398 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al--------------------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  398 (458)
                      |..+...|.|++|+..|+++-                    +.  ..+.+.+|+++|.++.+.|++++|++.|.+|    
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence            666666666666666665543                    21  1356789999999999999999999999886    


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                       +++.+|++.|.++..+|+|++|+++|..|.+..++ +.+...++.++.++++..
T Consensus      1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A         1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLA 1184 (1630)
T ss_pred             -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHH
Confidence             88999999999999999999999999999988744 323334666666554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.19  E-value=1.1e-05  Score=64.54  Aligned_cols=110  Identities=5%  Similarity=-0.038  Sum_probs=86.6

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhC---CCC--
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---------TLLSNRSLCWIRLGQAEHALADAKACRALR---PDW--  401 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~--  401 (458)
                      .+++....++..|.|+.|+.....++.+..+++         .+++.+|.+++..++|..|...|++|+++.   |..  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            478888899999999999999999888754444         388999999999999999999999998652   111  


Q ss_pred             --------------------hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          402 --------------------PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       402 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                                          .+..|..|.||..++++++|+..++.. -..-..+.....|+.++
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                                268899999999999999999998743 22224566666666553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.18  E-value=1.3e-05  Score=72.41  Aligned_cols=116  Identities=8%  Similarity=-0.075  Sum_probs=93.4

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCC----chhHHHhHHHH--HHhhC--CHHHHHHHHHHHHHhCCCC--h
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS----DATLLSNRSLC--WIRLG--QAEHALADAKACRALRPDW--P  402 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~--~~~~~--~~~~A~~~~~~a~~~~p~~--~  402 (458)
                      ..+.....++.+.+.|+++.|.+.+++..+.+|+    +-.+..+++.+  .+..|  ++.+|+..|+++.+..|++  +
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~  214 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ  214 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence            4566778899999999999999999999999883    33444555444  66556  9999999999999988873  4


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhhcc----------CCCcHHHHHHHHHHHHHhhh
Q 012683          403 KACYREGAALRLLEKFDEAANAFYEGVTL----------DPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       403 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ..+++   ++..+|++++|.+.++..++.          +|+++.+..++..+...+++
T Consensus       215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            45555   899999999999999988776          58899999888766666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=2e-06  Score=82.73  Aligned_cols=120  Identities=10%  Similarity=0.110  Sum_probs=99.5

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----------------hHHHhHHHHHHhhCCHHHHHHHHHHHHHhC
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----------------TLLSNRSLCWIRLGQAEHALADAKACRALR  398 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  398 (458)
                      ...++|..+++.|+|++|++.|.++++..|...                 .++.++|.+|.+.|++++|++.+.+++.+.
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            356788889999999999999999999887643                 358899999999999999999999999987


Q ss_pred             CCChHH------HHHHHHHHHHhhhHHHHHHHHHHhhccC------CCcHHHHHHHHHHHHHhhhhhcC
Q 012683          399 PDWPKA------CYREGAALRLLEKFDEAANAFYEGVTLD------PENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       399 p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +...++      +..+|.++...|+++.|+..+++++...      +....++..++.++...|++.++
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS  154 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence            765443      4567888888999999999999987642      33467888999999888876653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.85  E-value=2.3e-05  Score=74.01  Aligned_cols=120  Identities=14%  Similarity=0.065  Sum_probs=95.2

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCC-------------------------CchhHHHhHHHHHHhhCCHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDP-------------------------SDATLLSNRSLCWIRLGQAEHAL  388 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------------------------~~~~~~~~~a~~~~~~~~~~~A~  388 (458)
                      +..+...|..+++.|+|++|++.|.++-....                         .++.-...+..+|.+.|++++|+
T Consensus       148 a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          148 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             TTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence            34577788888888888888888888732100                         11112223457899999999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHH--HHhhhHHHHHHHHHHhhccCC-----CcHHHHHHHHHHHHHhhhhh
Q 012683          389 ADAKACRALRPDWPKACYREGAAL--RLLEKFDEAANAFYEGVTLDP-----ENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       389 ~~~~~a~~~~p~~~~~~~~~a~~~--~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ..+++++.+++.+...+..+|.+|  ++-++..++++.|...+.+.|     ++...|..+..++...++++
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            999999999999999999998877  678899999999999998888     78888988888888777665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.83  E-value=6.5e-05  Score=66.25  Aligned_cols=118  Identities=12%  Similarity=0.034  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhhHHHhh------ccHHHHHHH-----HHHhh-ccCCCchhHHHhHHHHHHh---h--C------CHHHH
Q 012683          331 KKKAAEAKARGDEAFKQ------KDYLMAVDA-----YTQAI-DFDPSDATLLSNRSLCWIR---L--G------QAEHA  387 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~------~~~~~A~~~-----~~~al-~~~p~~~~~~~~~a~~~~~---~--~------~~~~A  387 (458)
                      ..++..+..+|..|-.+      ..|.+++..     +.+++ +.+|++.++++-.|.....   .  |      ...+|
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A  182 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence            34566666666665322      344444442     34444 3567888877776666543   1  2      36789


Q ss_pred             HHHHHHHHHhCCC--ChHHHHHHHHHHHHh-----hhHHHHHHHHHHhhccCCCc-HHHHHHHHHHHHH
Q 012683          388 LADAKACRALRPD--WPKACYREGAALRLL-----EKFDEAANAFYEGVTLDPEN-KELVFAFREAVEA  448 (458)
Q Consensus       388 ~~~~~~a~~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~  448 (458)
                      ...+++|++++|+  +..+|..+|..|...     |+.+.|.+.|++|++++|+. ...+..++..+-.
T Consensus       183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            9999999999999  677999999999995     99999999999999999975 8888888887654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.80  E-value=0.00017  Score=55.11  Aligned_cols=79  Identities=10%  Similarity=-0.076  Sum_probs=67.5

Q ss_pred             HHHHHHhhhHHHhhccHHH---HHHHHHHhhccC-C-CchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLM---AVDAYTQAIDFD-P-SDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      .+..++.|..+.+..+...   +|..++..+... | ..-..+|.+|..++++|+|.+|.++++.+++.+|+|..+.--+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3567888888888776655   999999999987 5 4678999999999999999999999999999999999987665


Q ss_pred             HHHH
Q 012683          409 GAAL  412 (458)
Q Consensus       409 a~~~  412 (458)
                      ..+.
T Consensus       115 ~~i~  118 (126)
T 1nzn_A          115 RLID  118 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.69  E-value=0.00014  Score=69.58  Aligned_cols=85  Identities=7%  Similarity=-0.114  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL----  397 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----  397 (458)
                      ....+..+.+.|..|...|+|++|+..|++++++     .|++   ...++++|.+|..+|++++|+..+++|+++    
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            3467888999999999999999999999999975     3444   568999999999999999999999999975    


Q ss_pred             -CCCChH---HHHHHHHHHHH
Q 012683          398 -RPDWPK---ACYREGAALRL  414 (458)
Q Consensus       398 -~p~~~~---~~~~~a~~~~~  414 (458)
                       .|++|.   .+.+++.+...
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHH
Confidence             677764   33445555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.63  E-value=0.00011  Score=70.34  Aligned_cols=75  Identities=12%  Similarity=-0.020  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc-----CCCc---hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh----
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF-----DPSD---ATLLSNRSLCWIRLGQAEHALADAKACRAL----  397 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----  397 (458)
                      ....+..+.+.|..|...|+|++|+.+|++++++     .|++   +..++++|.+|..+|++++|+..|++|+++    
T Consensus       336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~  415 (433)
T 3qww_A          336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA  415 (433)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            3466788999999999999999999999999975     3444   568999999999999999999999999976    


Q ss_pred             -CCCChHH
Q 012683          398 -RPDWPKA  404 (458)
Q Consensus       398 -~p~~~~~  404 (458)
                       .|++|..
T Consensus       416 lG~~Hp~~  423 (433)
T 3qww_A          416 HGKDHPYI  423 (433)
T ss_dssp             TCTTCHHH
T ss_pred             cCCCChHH
Confidence             6887753

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.61  E-value=0.00011  Score=67.48  Aligned_cols=73  Identities=14%  Similarity=0.016  Sum_probs=63.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      +..+...+..++..|++++|+..+++|++++|. ...|..+|.++...|++++|++.|++|+.++|..+..+..
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~  349 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI  349 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHH
Confidence            456677888888889999999999999999975 6788999999999999999999999999999988654433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.58  E-value=0.0006  Score=52.17  Aligned_cols=81  Identities=11%  Similarity=-0.057  Sum_probs=67.6

Q ss_pred             HHHHHHhhhHHHhhc---cHHHHHHHHHHhhccCCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQK---DYLMAVDAYTQAIDFDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ++..++.|..+.+..   +..++|..++..++..|. .-+.+|.+|..+.++|+|.+|.++++.+++.+|++..+.--..
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            355677777777665   456899999999998884 5789999999999999999999999999999999998876666


Q ss_pred             HHHHH
Q 012683          410 AALRL  414 (458)
Q Consensus       410 ~~~~~  414 (458)
                      .+.-+
T Consensus       120 ~Ie~k  124 (134)
T 3o48_A          120 MVEDK  124 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.46  E-value=0.0013  Score=50.96  Aligned_cols=79  Identities=11%  Similarity=-0.049  Sum_probs=66.6

Q ss_pred             HHHHHHhhhHHHhhcc---HHHHHHHHHHhhccCCC-chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKD---YLMAVDAYTQAIDFDPS-DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      .+..++.|..+.+..+   -.++|..++..+...|. .-+.+|.+|..++++|+|.+|.++++.+++.+|+|..+.--..
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            3556788888887754   46799999999998884 5689999999999999999999999999999999998776555


Q ss_pred             HHH
Q 012683          410 AAL  412 (458)
Q Consensus       410 ~~~  412 (458)
                      .+.
T Consensus       119 ~Ie  121 (144)
T 1y8m_A          119 MVE  121 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.18  E-value=0.0018  Score=65.49  Aligned_cols=95  Identities=8%  Similarity=-0.026  Sum_probs=52.2

Q ss_pred             HHHhhhHHHhhccHHHHH-HHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHh-----------CCC----
Q 012683          337 AKARGDEAFKQKDYLMAV-DAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRAL-----------RPD----  400 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----------~p~----  400 (458)
                      +...+......|+.++|. ..|++|+...|.+..+|...+....+.|++++|...|++++..           .|.    
T Consensus       346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~  425 (679)
T 4e6h_A          346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA  425 (679)
T ss_dssp             HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence            344444444555555554 6666666666666556666666666666666666666666543           132    


Q ss_pred             -------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          401 -------WPKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       401 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                             ...+|...+....+.|+.+.|...|.+|++.
T Consensus       426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   2334555555555555555555555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.16  E-value=0.0056  Score=57.59  Aligned_cols=103  Identities=16%  Similarity=0.034  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc--------h--------------hHHHhHHHHHHhhCCHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD--------A--------------TLLSNRSLCWIRLGQAE  385 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~~a~~~~~~~~~~  385 (458)
                      ..+....+.+...|......|+.++|++.+.+|+.+-...        .              .+...++.++...|++.
T Consensus       109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~  188 (388)
T 2ff4_A          109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRAS  188 (388)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            4456677888888888888999999999999999874221        0              23445678888999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 012683          386 HALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVT  430 (458)
Q Consensus       386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  430 (458)
                      +|+..+.+++..+|-+-.+|..+-.+++..|+..+|++.|+++-+
T Consensus       189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988643

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.10  E-value=0.0067  Score=47.41  Aligned_cols=105  Identities=12%  Similarity=-0.005  Sum_probs=88.6

Q ss_pred             HHHHHHhhhHHHhhccH------HHHHHHHHHhhccCCCc--------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683          334 AAEAKARGDEAFKQKDY------LMAVDAYTQAIDFDPSD--------ATLLSNRSLCWIRLGQAEHALADAKACRALRP  399 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  399 (458)
                      .+.++......-+.|+.      ++-++.|++|+..-|..        .-+|...|.- ...++.++|.+.|..++.+..
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence            45677777777777888      88899999999987763        3466666644 567999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHH
Q 012683          400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELV  439 (458)
Q Consensus       400 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  439 (458)
                      .+++.|...|....+.|+...|.+.+.+|+...|...+..
T Consensus        92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9999999999999999999999999999999999876644

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.07  E-value=0.0045  Score=62.62  Aligned_cols=119  Identities=3%  Similarity=-0.122  Sum_probs=96.1

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhcc-CCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDF-DPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ...+...+....+.|..+.|...|.+|+.. .+....+|...|..-.+.++ ++.|...|+.+++..|+++..+...+..
T Consensus       434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f  513 (679)
T 4e6h_A          434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            345667777777788999999999999987 44456778777777777654 8999999999999999999988888888


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHHhhhh
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPE---NKELVFAFREAVEAGRKF  452 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~  452 (458)
                      ....|+.+.|...|++|+...|+   ...++..+.....+.|..
T Consensus       514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~  557 (679)
T 4e6h_A          514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL  557 (679)
T ss_dssp             HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            88999999999999999998873   456666666666555543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.74  E-value=0.006  Score=48.73  Aligned_cols=81  Identities=23%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC---C----------------------CchhHHHhHHHHHHhhCCHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD---P----------------------SDATLLSNRSLCWIRLGQAE  385 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----------------------~~~~~~~~~a~~~~~~~~~~  385 (458)
                      ...++.+.-.|..+|..++|..|...|++|+.+.   +                      .+.++.|..|.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            4668899999999999999999999999987641   1                      12268899999999999999


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          386 HALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       386 ~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      +|+..++..- ..-..++.-+.+|+.|
T Consensus       140 ~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          140 DAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence            9999876532 2334566666666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.68  E-value=0.02  Score=55.74  Aligned_cols=116  Identities=10%  Similarity=-0.102  Sum_probs=87.3

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHH------------------------------------
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLC------------------------------------  377 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~------------------------------------  377 (458)
                      ..-+...+..+...|+.++|...|++|+.. |.+..+|+..+..                                    
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            355777888888889999999999999999 9887666544332                                    


Q ss_pred             ----HHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh-hHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          378 ----WIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE-KFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       378 ----~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                          ..+.+..+.|...|.+| +..+.....|...|......+ +++.|...|+.+++..|+.+..+..+...+..+++
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~  369 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD  369 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence                22356688899999999 433345667777777777777 59999999999999889988877666665555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.11  E-value=0.038  Score=53.32  Aligned_cols=78  Identities=18%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      -+.-.|....-+..+..|...|.+|+.+.|++...|..+|.+....|+.-+|+-+|.+++.-...++.+.-++...+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            345555555555566666666666666666666666666666666666666666666666555455555655555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.027  Score=57.08  Aligned_cols=59  Identities=20%  Similarity=0.153  Sum_probs=52.2

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  428 (458)
                      ++..-+.-++..|+|+-|+...++|+..-|.....|+.|+.+|..+|+|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666667899999999999999999999999999999999999999999888766

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.32  E-value=0.24  Score=48.07  Aligned_cols=111  Identities=6%  Similarity=-0.140  Sum_probs=84.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG-QAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ..+...+....+.+..+.|...|.+| ...+....+|...|..-...+ +.+.|...|+.+++.-|+.+..+...+....
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~  365 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL  365 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            45666777777788899999999999 433335567777777666666 6999999999999999999988777788888


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      ..|+.+.|...|+++.    .....+..........|
T Consensus       366 ~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          366 RIGDEENARALFKRLE----KTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             HHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            9999999999998873    34555555554444443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.05  E-value=0.2  Score=43.44  Aligned_cols=63  Identities=22%  Similarity=0.171  Sum_probs=58.6

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPK  403 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  403 (458)
                      ...+++.|+.++|++..+..++..|.+......+-+.+.-.|+|+.|.+.++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            346788999999999999999999999999999999999999999999999999999998754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.03  E-value=0.081  Score=41.38  Aligned_cols=91  Identities=8%  Similarity=-0.043  Sum_probs=71.5

Q ss_pred             ccCCCchhHHHhHHHHHHhhCCH------HHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          362 DFDPSDATLLSNRSLCWIRLGQA------EHALADAKACRALRPDW--------PKACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       362 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~a~~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                      -+.|++++.|........+.|+.      ++-++.|++|+..-|..        ...|.+.|.- ...++.++|.+.|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence            46799999999999999999999      89999999999877642        3444555644 677999999999999


Q ss_pred             hhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          428 GVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       428 a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      ++.+....+.+|...++..-++++..
T Consensus        86 a~~~hKkFAKiwi~~AqFEiRqgnl~  111 (161)
T 4h7y_A           86 ARANCKKFAFVHISFAQFELSQGNVK  111 (161)
T ss_dssp             HHHHCTTBHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcccHH
Confidence            99887777888888887777666544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.06  Score=54.60  Aligned_cols=62  Identities=15%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKAC  394 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  394 (458)
                      ...-+..++..+..+|+|+-|++.-++|+...|.+...|+.++.||..+|+|+.|+-.+..+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34467778888999999999999999999999999999999999999999999999776665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.82  E-value=0.35  Score=47.00  Aligned_cols=103  Identities=12%  Similarity=-0.035  Sum_probs=83.5

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALRP-DWPKACYREGAALR  413 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~  413 (458)
                      .+...-..+.+.|++++|.+.|.+..+.. ..+...|..+-.+|.+.|+.++|.+.|++..+..- -+...|..+-.++.
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            45667778889999999999999987653 33577788888899999999999999999887542 25567999999999


Q ss_pred             HhhhHHHHHHHHHHhhc--cCCCcHHH
Q 012683          414 LLEKFDEAANAFYEGVT--LDPENKEL  438 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~--~~p~~~~~  438 (458)
                      +.|++++|.+.|++--.  ..|+...+
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~  213 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTF  213 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999999988654  45665443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.66  E-value=0.84  Score=36.39  Aligned_cols=94  Identities=12%  Similarity=0.035  Sum_probs=74.7

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH--Hh---------------CCCC
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR--AL---------------RPDW  401 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~~---------------~p~~  401 (458)
                      -.+..++-.|.|..|+-.+.+     -+.....+.-+.||.++.+|.+|+..+++.+  +.               +|.+
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D  112 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD  112 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred             hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence            467778888999988887643     3567788888999999999999999999999  22               3444


Q ss_pred             hHHH-HHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          402 PKAC-YREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       402 ~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      -+.+ ..+|..+...|+-+||+..|.......|=.+.
T Consensus       113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            5544 46899999999999999999988877765443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.51  E-value=0.17  Score=48.77  Aligned_cols=81  Identities=7%  Similarity=-0.070  Sum_probs=74.6

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ..+..+|.+......+..|..+|.+|+.+.|++...|..+|.+....|+.-+|+-+|.+++.-....+.+..++..++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            36678899999999999999999999999999999999999999999999999999999998877789999999998876


Q ss_pred             h
Q 012683          449 G  449 (458)
Q Consensus       449 ~  449 (458)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.26  E-value=0.44  Score=46.34  Aligned_cols=107  Identities=13%  Similarity=0.011  Sum_probs=80.3

Q ss_pred             hccHHHHHHHHHHhhccC-CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhhHHHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFD-PSDATLLSNRSLCWIRLGQAEHALADAKACRALR-PDWPKACYREGAALRLLEKFDEAANA  424 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~  424 (458)
                      .+..++|.+.|.+..+.. +.+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            345677888888766543 2357788889999999999999999999988764 22677899999999999999999999


Q ss_pred             HHHhhcc--CCCcHHHHHHHHHHHHHhhhhhc
Q 012683          425 FYEGVTL--DPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       425 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      |.+-.+.  .|+. ..+..+-.++.+.|+.++
T Consensus       163 ~~~M~~~G~~Pd~-~ty~~Li~~~~~~g~~d~  193 (501)
T 4g26_A          163 DAHMVESEVVPEE-PELAALLKVSMDTKNADK  193 (501)
T ss_dssp             HHHHHHTTCCCCH-HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCCCCH-HHHHHHHHHHhhCCCHHH
Confidence            9987654  5554 444455555555555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.80  E-value=0.23  Score=46.27  Aligned_cols=93  Identities=16%  Similarity=-0.021  Sum_probs=74.7

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCC------chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC---CCC----hHHH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPS------DATLLSNRSLCWIRLGQAEHALADAKACRALR---PDW----PKAC  405 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~----~~~~  405 (458)
                      ..|..++..|+|.+|.+.+++..+....      -.+++......|..++++.++...+.+|....   +.+    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6889999999999999999888874222      24678888999999999999999999987653   122    2444


Q ss_pred             HHHHHHHH-HhhhHHHHHHHHHHhhcc
Q 012683          406 YREGAALR-LLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       406 ~~~a~~~~-~~~~~~~A~~~~~~a~~~  431 (458)
                      ..-|..+. ..++|..|..+|.+++..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            56788888 899999999999998743

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.40  E-value=0.4  Score=41.60  Aligned_cols=66  Identities=17%  Similarity=0.056  Sum_probs=59.5

Q ss_pred             HHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          377 CWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       377 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      ..++.|..++|+..+...++-+|.+...-..+-..+.-.|+|+.|.+-++-+.+++|+....-..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999976554333

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.99  E-value=0.36  Score=45.15  Aligned_cols=65  Identities=9%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      .....+...+..+...|++.+|+..+.+++..+|-+-.+|..+-.++...|+..+|++.|+++-+
T Consensus       169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455667778888999999999999999999999999999999999999999999999988754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.76  E-value=0.41  Score=45.46  Aligned_cols=96  Identities=13%  Similarity=0.036  Sum_probs=78.2

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCC---chhHHHhHHHHHHhhCCHHHHHHHHHHHHHh---CCCC---hHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPS---DATLLSNRSLCWIRLGQAEHALADAKACRAL---RPDW---PKACYR  407 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~p~~---~~~~~~  407 (458)
                      +..+|..+++.|++++|++.|.++......   -..++.....+++..++|..|...+.++-.+   .+++   .+....
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            467899999999999999999998876433   3578888889999999999999999999665   2333   234556


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccC
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLD  432 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~  432 (458)
                      .|.++...++|.+|...|..++...
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccC
Confidence            7888889999999999999887553

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.80  E-value=1.9  Score=41.07  Aligned_cols=100  Identities=11%  Similarity=-0.073  Sum_probs=78.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----CCC--chhHHHhHHHHHHhhCCHHHHHHHHHHHHH---hCCCC-
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----DPS--DATLLSNRSLCWIRLGQAEHALADAKACRA---LRPDW-  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~p~~-  401 (458)
                      ++++-....+..++..|+|.+|...++....-    .+.  -.+++..-...+...+++.+|...++++..   -.+.. 
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            45666678999999999999999998886532    111  146777888999999999999999999742   23333 


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                         ...|...|..+...++|.+|..+|.+++..
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               355678899999999999999999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.83  E-value=1.4  Score=45.30  Aligned_cols=83  Identities=11%  Similarity=-0.034  Sum_probs=52.8

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHH--------HhCCCChHHHHHH----
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACR--------ALRPDWPKACYRE----  408 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~----  408 (458)
                      ...+...|++++|.+....     .++...|-.+|..+.+.++++.|.+.|.++=        .....+.+....+    
T Consensus       659 f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence            3445667778877776432     3567888889999989999998888888741        1112333322222    


Q ss_pred             --------HH-HHHHhhhHHHHHHHHHHh
Q 012683          409 --------GA-ALRLLEKFDEAANAFYEG  428 (458)
Q Consensus       409 --------a~-~~~~~~~~~~A~~~~~~a  428 (458)
                              |. ++..+|++++|++.|.+.
T Consensus       734 ~~~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          734 ETTGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence                    33 455577777777766654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=87.01  E-value=8.9  Score=40.28  Aligned_cols=120  Identities=8%  Similarity=-0.084  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhC--CCChHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----DPSDATLLSNRSLCWIRLGQAEHALADAKACRALR--PDWPKAC  405 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~  405 (458)
                      ..-..+...-..+.+.|+.++|.+.|.+.-+.    ...+...|.-+-..|.+.|+.++|.+.|++.....  | +...|
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY  203 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence            34456777888899999999999999765432    23457888888899999999999999999998754  5 66678


Q ss_pred             HHHHHHHHHhhh-HHHHHHHHHHhhcc--CCCcHHHH-----HHHHHHHHHhhhh
Q 012683          406 YREGAALRLLEK-FDEAANAFYEGVTL--DPENKELV-----FAFREAVEAGRKF  452 (458)
Q Consensus       406 ~~~a~~~~~~~~-~~~A~~~~~~a~~~--~p~~~~~~-----~~l~~~~~~~~~~  452 (458)
                      ..+-.++.+.|+ .++|.+.|++-...  .|+...+.     .....++..+++.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence            888889999998 47888888876643  45543332     2344555555443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.64  E-value=0.93  Score=31.55  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=29.3

Q ss_pred             chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683          327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID  362 (458)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  362 (458)
                      +....+.+..+..+|...-+.|+|++|+.+|.++++
T Consensus        12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            445667888889999889999999999998877665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.98  E-value=5.2  Score=41.02  Aligned_cols=105  Identities=17%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhcc--------CCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDF--------DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      +.+...|..+.+.++++.|+.+|.++=..        ...+...+..++......|++..|...|.+.        .-+-
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~--------g~~~  753 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA--------GDIQ  753 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------TCHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc--------CCHH
Confidence            57889999999999999999999886332        1334455556667777777777777665542        1122


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhhccCCCc---HHHHHHHHHHHHHhh
Q 012683          407 REGAALRLLEKFDEAANAFYEGVTLDPEN---KELVFAFREAVEAGR  450 (458)
Q Consensus       407 ~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~  450 (458)
                      ..-.+|...+++++|...-++   ..|..   +.+....+.-+...+
T Consensus       754 ~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~  797 (814)
T 3mkq_A          754 GAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNG  797 (814)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhcc
Confidence            345678899999999987654   45554   234444444333333

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.82  E-value=2.3  Score=45.89  Aligned_cols=91  Identities=14%  Similarity=-0.055  Sum_probs=72.1

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccC-C----------------------CchhHHHhHHHHHHhhCCHHHHHHHHHH
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFD-P----------------------SDATLLSNRSLCWIRLGQAEHALADAKA  393 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~  393 (458)
                      .+-+|..++..|++++|.++|++|-.-. .                      ..+..|+.....+.+.+.++.+++....
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3778999999999999999999985311 1                      0124566778889999999999999999


Q ss_pred             HHHhCCC-Ch----HHHHHHHHHHHHhhhHHHHHHHHHH
Q 012683          394 CRALRPD-WP----KACYREGAALRLLEKFDEAANAFYE  427 (458)
Q Consensus       394 a~~~~p~-~~----~~~~~~a~~~~~~~~~~~A~~~~~~  427 (458)
                      |++..+. +.    ..|.++=..+..+|+|++|...+..
T Consensus       925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9987643 32    2577888899999999999888753

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.71  E-value=1.9  Score=41.42  Aligned_cols=64  Identities=8%  Similarity=0.007  Sum_probs=28.5

Q ss_pred             HHHhHHHHHHhhCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          370 LLSNRSLCWIRLGQAEHALADAKACRALRP-----DWPKACYREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       370 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      ++..+=..|+.-+.|+.|.....++.-..+     .....+|.+|+++...++|.+|.+++..|+...|
T Consensus       233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            333344444444444444444444431111     1133444455555555555555555555554443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=83.47  E-value=1.5  Score=30.44  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID  362 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  362 (458)
                      ..+.+..+..+|...-+.|+|++|+.+|..+++
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            456777888888888888888888888877654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.80  E-value=9.2  Score=30.53  Aligned_cols=68  Identities=16%  Similarity=0.076  Sum_probs=54.1

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhc--c---------------CCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHH
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAID--F---------------DPSDAT-LLSNRSLCWIRLGQAEHALADAKACRA  396 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~  396 (458)
                      ....-+.-.+.+..+|..|+..+++.++  .               +|.+-+ .+..+|....+.|..+||+.++.....
T Consensus        63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A           63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            4456677788899999999999999983  2               233434 455689999999999999999999988


Q ss_pred             hCCCCh
Q 012683          397 LRPDWP  402 (458)
Q Consensus       397 ~~p~~~  402 (458)
                      ..|-.+
T Consensus       143 ~~~lf~  148 (242)
T 3kae_A          143 KSFLFS  148 (242)
T ss_dssp             HCCCHH
T ss_pred             Cccccc
Confidence            877654

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=82.12  E-value=4.1  Score=27.37  Aligned_cols=36  Identities=31%  Similarity=0.284  Sum_probs=26.0

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchh
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT  369 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  369 (458)
                      --.-...|..+...|++++|+.+|.+|+...|.-..
T Consensus        17 Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           17 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            334456778888888888888888888888776443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.93  E-value=4.1  Score=44.00  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=67.8

Q ss_pred             hHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH-h----------------------C
Q 012683          342 DEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA-L----------------------R  398 (458)
Q Consensus       342 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~----------------------~  398 (458)
                      ..+...+.++-+.+.    +...|.++..-|.+|.+++..|++++|...|.+|-. +                      .
T Consensus       820 ~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~  895 (1139)
T 4fhn_B          820 EKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ  895 (1139)
T ss_dssp             HHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred             HHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence            345666666655442    345567777789999999999999999999988731 1                      1


Q ss_pred             CCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccC-CCcHH
Q 012683          399 PDWPKACYREGAALRLLEKFDEAANAFYEGVTLD-PENKE  437 (458)
Q Consensus       399 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~  437 (458)
                      ..-+..|+.....+...+-++.+++.-+.|+... ++++.
T Consensus       896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~  935 (1139)
T 4fhn_B          896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED  935 (1139)
T ss_dssp             CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence            1124667788889999999999999999998764 34443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.84  E-value=23  Score=32.85  Aligned_cols=101  Identities=12%  Similarity=-0.007  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----------------------CCCch------------------hH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----------------------DPSDA------------------TL  370 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~~------------------~~  370 (458)
                      ..+-++..+.|..|.+.|++++-.+.+......                      .|+..                  ..
T Consensus        16 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~   95 (394)
T 3txn_A           16 RIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT   95 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            345577889999999999998887776544322                      12211                  12


Q ss_pred             H------HhHHHHHHhhCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 012683          371 L------SNRSLCWIRLGQAEHALADAKACRALRP------DWPKACYREGAALRLLEKFDEAANAFYEGVTL  431 (458)
Q Consensus       371 ~------~~~a~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  431 (458)
                      |      ..+|..|+..|+|.+|++.+.+..+--.      .-.+.|....++|..++++..+...|.+|...
T Consensus        96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            2      2689999999999999999999886321      12467788899999999999999999988654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=81.62  E-value=6.4  Score=31.78  Aligned_cols=76  Identities=12%  Similarity=-0.030  Sum_probs=44.4

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD  419 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  419 (458)
                      +.....+-|+++.|.+.....     ++...|..+|...+..|+++-|.+.|.++=        -+-.+...|.-.|+-+
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHH
Confidence            445566677777777765443     456677777777777777777777776642        1223444455555554


Q ss_pred             HHHHHHHHh
Q 012683          420 EAANAFYEG  428 (458)
Q Consensus       420 ~A~~~~~~a  428 (458)
                      .-...-+.+
T Consensus        78 ~L~kla~iA   86 (177)
T 3mkq_B           78 KLSKMQNIA   86 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444333333

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.28  E-value=6.3  Score=37.20  Aligned_cols=79  Identities=6%  Similarity=-0.081  Sum_probs=62.1

Q ss_pred             CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--CCCcHHHH
Q 012683          365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD---WPKACYREGAALRLLEKFDEAANAFYEGVTL--DPENKELV  439 (458)
Q Consensus       365 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~  439 (458)
                      ..-..++..+|..|.+.|++++|++.|.++......   -...++...+++...++|..+...+.++-.+  ...++...
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~  207 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR  207 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence            334568899999999999999999999999876433   3578889999999999999999999998654  23344444


Q ss_pred             HHHH
Q 012683          440 FAFR  443 (458)
Q Consensus       440 ~~l~  443 (458)
                      ..+.
T Consensus       208 ~~lk  211 (429)
T 4b4t_R          208 NRYK  211 (429)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.92  E-value=7.3  Score=31.45  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=54.8

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ....|...|......|+++-|..+|+++=.        +..+...|.-.|+.++-.+..+.|...+-     +.....++
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~   99 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNT   99 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHH
Confidence            345799999999999999999999988543        23334445556776655555444444332     22223456


Q ss_pred             HHhhhHHHHHHHHHHhh
Q 012683          413 RLLEKFDEAANAFYEGV  429 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~  429 (458)
                      ..+|+++++++.|.+.-
T Consensus       100 l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B          100 FYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHTCHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHCC
Confidence            67777777777776553

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.08  E-value=8.4  Score=40.62  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=72.8

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHH-hCC-------------------
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRA-LRP-------------------  399 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~p-------------------  399 (458)
                      ....+...+.++-|.+    .+...|.++..-|.+|.+++..|++++|...|.+|-. +..                   
T Consensus       816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e  891 (950)
T 4gq2_M          816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH  891 (950)
T ss_dssp             HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred             HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence            3445566677765443    4567778888889999999999999999999998642 111                   


Q ss_pred             -C--ChHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCcHHHHH
Q 012683          400 -D--WPKACYREGAALRLLEKFDEAANAFYEGVTL-DPENKELVF  440 (458)
Q Consensus       400 -~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~  440 (458)
                       .  ....|......+...+-++-+++.-+.|+.. .++++....
T Consensus       892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~  936 (950)
T 4gq2_M          892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI  936 (950)
T ss_dssp             TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence             1  1246778999999999999999999999964 566666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-42
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-40
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-37
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-36
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-35
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-34
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-28
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-27
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-28
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-26
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-25
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-24
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-24
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-23
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-18
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-23
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-18
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-18
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-16
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-10
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-09
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	4e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	8e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 1e-42
 Identities = 77/268 (28%), Positives = 107/268 (39%), Gaps = 36/268 (13%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
                     LH AA+ GK  V + LLE      +   ++G TPL  A    + +  K L
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQ 168
              G +P  P+  G T LH +A    +E+   LL  G   ++ES  G TPL  AA  G  
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244

Query: 169 EAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG--------- 219
           E V +LL   AN N   +  +TPL      G +   D+LI+ G   +             
Sbjct: 245 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 304

Query: 220 -------------------------GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQ 254
                                    G +PLH AA  G T+I+  LLK GA PN    DG 
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 364

Query: 255 KPIQVAAARGNREAVEILFPLTSEDPSI 282
            P+ +A   G     ++L  +T E   +
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFV 392

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 6e-40
 Identities = 72/216 (33%), Positives = 102/216 (47%), Gaps = 3/216 (1%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            LH A+  G   + K LL+      +  +   ETPL  AAR GHTE AKYL ++ A    
Sbjct: 3   PLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEV-DSESDAGTPLIWAAGHGQQEAVKVLLEH 177
            +    T LH +A IG+  ++  LL   A    + +   TPL  AA  G  E V  LLE 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
            A+    T+   TPL  A   G +   +LL++  A+ N     G TPLH+A    + +I+
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           K LL  G  P+    +G  P+ +AA +   E    L
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 8e-37
 Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 2/185 (1%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
           TPL  A+  GH    K L + GA+P + +    T LH +A  G+ E+  YLL   A+V++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 152 ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
           ++    TPL  AA  G    VK+LLE++ANPN  T    TPL  A   G +  +  L++ 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 211 GANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
            A+   +   G TPLH+AA  G   + + LL+  A PN   ++G  P+ VA    N + V
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 270 EILFP 274
           ++L P
Sbjct: 182 KLLLP 186

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 3e-36
 Identities = 89/252 (35%), Positives = 132/252 (52%), Gaps = 12/252 (4%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A+  G+L ++K + ++             ++ +      LH AAR G T+V KYLL+  K
Sbjct: 7   ASFMGHLPIVKNLLQRGAS---------PNVSNVKVETPLHMAARAGHTEVAKYLLQN-K 56

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLT 140
             V+ + +D +TPL  AAR GHT   K L E+ ANP + +  G T LH +A  G++E + 
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 141 YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAG 199
            LL K A     +  G TPL  AA +G+    ++LLE  A+PNA  ++ +TPL  AV   
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 176

Query: 200 SLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQ 258
           +L  + LL+  G + +  A  G TPLHIAA     E+ + LL+ G   N     G  P+ 
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236

Query: 259 VAAARGNREAVE 270
           +AA  G+ E V 
Sbjct: 237 LAAQEGHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 2e-30
 Identities = 80/319 (25%), Positives = 120/319 (37%), Gaps = 76/319 (23%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE--- 77
           AA  G+ +    +AK L      +     + K  + +  LH AAR G T++ K LLE   
Sbjct: 40  AARAGHTE----VAKYLLQNKAKV-----NAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 78  -----------------------------ELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
                                        E +       + G TPL  AA+ G    A+ 
Sbjct: 91  NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 150

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
           L E  A+P      G T LH +    N++++  LL +G    S +  G TPL  AA   Q
Sbjct: 151 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 210

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
            E  + LL++  + NAE+   +TPL  A   G    + LL+   AN N+    G TPLH+
Sbjct: 211 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 270

Query: 227 AADIGSTEIIKCLLKAGADPNV---------------------------------TDEDG 253
            A  G   +   L+K G   +                                    + G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 254 QKPIQVAAARGNREAVEIL 272
             P+  AA +G+ + V +L
Sbjct: 331 YSPLHQAAQQGHTDIVTLL 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 2e-18
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 189 ITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPN 247
           +TPL  A   G L  +  L+Q GA+ N+      TPLH+AA  G TE+ K LL+  A  N
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 248 VTDEDGQKPIQVAAARGNREAVEIL 272
              +D Q P+  AA  G+   V++L
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLL 85

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  132 bits (333), Expect = 2e-35
 Identities = 37/286 (12%), Positives = 68/286 (23%), Gaps = 32/286 (11%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYL- 75
                     + + +        +   +  +D      +       AA  G +     L 
Sbjct: 51  FLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLC 110

Query: 76  -LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI--PSNLGATALHHSAG 132
            L      V     +       AA  GH      L E      +         A   +A 
Sbjct: 111 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

Query: 133 IGNIELLTYLLSKGAEVDSE----SDAGTPLIWAAGHGQQEAVKVLLEHHANPN------ 182
            G++ +L  L        +      +       A G G    +  LL+            
Sbjct: 171 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 230

Query: 183 -AETEDNITPLLSAVAAGSLTCLDLLIQAGANANI----------VAGGATPLHIAADIG 231
               E  + P ++          D    +  +                    L    D  
Sbjct: 231 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 290

Query: 232 STEIIKCLLKAGADP-----NVTDEDGQKPIQVAAARGNREAVEIL 272
             + I+ LL                D  + +++A   GN+ A  +L
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  100 bits (249), Expect = 4e-24
 Identities = 37/253 (14%), Positives = 64/253 (25%), Gaps = 45/253 (17%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE-L 79
           AA TG    L      L    +     +  +  A    A   AA  G   V   L E   
Sbjct: 97  AAITGCSSALD-TLCLLLTSDE-----IVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 80  KLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANP---TIPSNLGATALHHSAGIGNI 136
              +     +       AA  GH      L E         I +         + G G+ 
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 137 ELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLE------------HHANPNAE 184
            ++ +LL     +          I    +G++     +                +NP+  
Sbjct: 211 NVINFLLDCPVMLA------YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV 264

Query: 185 TE-----------DNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA------TPLHIA 227
            +             +  L+       L  +  L+       +             L +A
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 228 ADIGSTEIIKCLL 240
             +G+      LL
Sbjct: 325 LRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.3 bits (171), Expect = 7e-14
 Identities = 29/215 (13%), Positives = 50/215 (23%), Gaps = 35/215 (16%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG--ALHFAAREGKTDVCKYLLEE 78
           AA  G+L +L ++ +    +          +         A   AA  G   V   L E 
Sbjct: 133 AAENGHLHVLNRLCELAPTE---------IMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

Query: 79  LKLDVD--TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA----- 131
              +     Q E+       A  +GH     +L +                         
Sbjct: 184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIA 243

Query: 132 --GIGNIELLTYLLSKGAEVDSE----------SDAGTPLIWAAGHGQQEAVKVLLEHHA 179
                  E+         +   +                LI        + ++ LL    
Sbjct: 244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPG 303

Query: 180 -----NPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
                       D    L  A+  G+     LL+ 
Sbjct: 304 IKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.4 bits (153), Expect = 1e-11
 Identities = 24/165 (14%), Positives = 40/165 (24%), Gaps = 37/165 (22%)

Query: 42  KGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQG 101
              ++  A I+  N       A   G  +V  +LL+                 +H    G
Sbjct: 183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD--------CPVMLAYAEIHEFEYG 234

Query: 102 HTETAKYLFEHGA-----------------------NPTIPSNLGATALHHSAGIGNIEL 138
                 ++  H                         +  +        L        ++ 
Sbjct: 235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 294

Query: 139 LTYLLSKGAEVDSES------DAGTPLIWAAGHGQQEAVKVLLEH 177
           + +LLS               DA   L  A   G Q A  +LL  
Sbjct: 295 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 17/116 (14%), Positives = 26/116 (22%), Gaps = 26/116 (22%)

Query: 20  NAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRG------------------ALH 61
           +    G       +   +      L +     K +N  G                   L 
Sbjct: 229 HEFEYGEKY----VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 284

Query: 62  FAAREGKTDVCKYLLE----ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG 113
               E   D  ++LL     +      T   D    L  A R G+      L    
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 2e-34
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 3/215 (1%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           +   A  GK +  K  +   K      D+D  T L  A   GHTE  ++L + G      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHH 178
            + G + LH +A  G  E++  LL KGA+V++ +  G TPL +AA   + E   +LLE  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIK 237
           ANP+A+     T +  A A G+L  + +L+   A+ NI    G TPLH+A D    E  K
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            L+  GA   + +++ + P+QV A  G    ++ +
Sbjct: 187 LLVSQGASIYIENKEEKTPLQV-AKGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 4e-28
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLE 77
             N A +G L+ LK+    +         ++A   D + R ALH+A   G T++ ++ L 
Sbjct: 7   VCNLAYSGKLEELKES---ILADK-----SLATRTDQDSRTALHWACSAGHTEIVEF-LL 57

Query: 78  ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE 137
           +L + V+ +D+ G +PL  AA  G  E  K L   GA     +  G T LH++A     E
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE 117

Query: 138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAV 196
           +   LL  GA  D++     T +  AA  G  + + +LL + A+ N +  +  TPL  A 
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 197 AAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK 241
               +    LL+  GA+  I      TPL +A   G   I+K +++
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 3e-16
 Identities = 55/197 (27%), Positives = 84/197 (42%), Gaps = 9/197 (4%)

Query: 120 SNLGATALHHSAGIGNIELLT-YLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH 177
           SNL    + + A  G +E L   +L+  +          T L WA   G  E V+ LL+ 
Sbjct: 3   SNL---MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 59

Query: 178 HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEII 236
               N + +   +PL  A +AG    +  L+  GA  N V   G TPLH AA     EI 
Sbjct: 60  GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIA 119

Query: 237 KCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQS 296
             LL+ GA+P+  D      +  AAA+GN   ++++  L     S      +G      +
Sbjct: 120 VMLLEGGANPDAKDHYEATAMHRAAAKGN---LKMIHILLYYKASTNIQDTEGNTPLHLA 176

Query: 297 ESGKQLEETRNLKENNA 313
              +++EE + L    A
Sbjct: 177 CDEERVEEAKLLVSQGA 193

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 2e-29
 Identities = 63/276 (22%), Positives = 110/276 (39%), Gaps = 56/276 (20%)

Query: 49  ADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTETAK 107
           A ++D +    L  A +    D+ + LLE    +V+ Q+ E G TPL +A +    +  +
Sbjct: 1   AAVEDNH---LLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVE 56

Query: 108 YL---------------------------------FEHGANPTIPSNLGATALHHSAGIG 134
            L                                    GA+       G TA   +A  G
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 135 NIELLTYLLSKGAEVDS-----------ESDAGTPLIWAAGHGQQEAVKVLLEHH-ANPN 182
            ++ L +L  +GA V+                 T L+ AA  G  E +K+LL+   A+ N
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 183 AETEDNITPLLSAVAAGSLTCLD----LLIQAGANANIVAG-GATPLHIAADIGSTEIIK 237
           A        L+ A+ +   + ++    LL+  GA+ N+    G TPL +A +     +++
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 238 CLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
            LL +   + N TD DG+  + +A     ++  E+L
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-27
 Identities = 68/294 (23%), Positives = 111/294 (37%), Gaps = 64/294 (21%)

Query: 10  AVRERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI---KDANKRGALHFAARE 66
           A  E     + A    ++D    + +QL + G       A++   ++      LH A + 
Sbjct: 1   AAVEDNHLLIKAVQNEDVD----LVQQLLEGG-------ANVNFQEEEGGWTPLHNAVQM 49

Query: 67  GKTDVCKYLLE--------------------------------ELKLDVDTQDEDGETPL 94
            + D+ + LL                                     DV+  D  G T  
Sbjct: 50  SREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 109

Query: 95  LHAARQGHTETAKYLFEHGAN----------PTIPSNLGATALHHSAGIGNIELLTYLLS 144
           + AA  G  +  K+L++ GAN                 GATAL  +A  G++E+L  LL 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 145 K-GAEVDSESDAGTPLIWAAGHGQQ-----EAVKVLLEHHANPNAETEDNITPLLSAVAA 198
           + GA+V++  + G   +  A              +LL+H A+ N   E   TPL+ AV  
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 199 GSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD 250
             L  +  L+ Q     N   + G T L +A ++   +I + L K GA  +  D
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 5e-20
 Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 14/199 (7%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSN-LGATALHHSAGIGNIELLTYLLSKGA 147
           +    L+ A +    +  + L E GAN        G T LH++  +   +++  LL  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 148 EVDSES-DAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206
           +      +  TP + AA  G  + +K+ L   A+ N       T  + A   G +  L  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 207 LIQAGANANIV-----------AGGATPLHIAADIGSTEIIKCLL-KAGADPNVTDEDGQ 254
           L + GAN N+             GGAT L  AA+ G  E++K LL + GAD N  D  G+
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 255 KPIQVAAARGNREAVEILF 273
             +  A    +   VE + 
Sbjct: 184 NALIHALLSSDDSDVEAIT 202

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  112 bits (279), Expect = 1e-28
 Identities = 57/278 (20%), Positives = 102/278 (36%), Gaps = 34/278 (12%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEE 78
           L+    G+  + + I            ++V  I   + R  LH+ A     +  + L+  
Sbjct: 6   LHTEAAGSYAITEPI----------TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVH 55

Query: 79  LKL-------DVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA 131
                     DV+  D D  TPL+ A          YL + GA+PTI +    +ALH +A
Sbjct: 56  EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAA 115

Query: 132 GIGNIELLTYLLSKGAEVDSE---------------SDAGTPLIWAAGHGQQEAVKVLLE 176
              +  ++ Y+L+                        + G   + +A    ++  KV  +
Sbjct: 116 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 175

Query: 177 HHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG--GATPLHIAADIGSTE 234
             A  ++E     T L  A    ++  +  L+    +        G TP+ +AA  G  E
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           ++  L++ GA     D       Q+A A  +   V+I 
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.5 bits (171), Expect = 3e-14
 Identities = 29/94 (30%), Positives = 46/94 (48%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           D +    R ALH+AA+     + KYL+ E   + D QDEDG+TP++ AA++G  E   YL
Sbjct: 181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLL 143
            + GA+         TA   +    +  ++    
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 60/241 (24%)

Query: 91  ETPL-LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLL------ 143
           E+P+ LH    G     + +     N  I      T LH  A   + E    L+      
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 144 --SKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGS 200
             + GA+V++      TPL+ A    ++  V  L++  A+P    +   + L  A A   
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 201 LTCLDLLIQAGANANIVAG----------------------------------------- 219
              +  ++ +      +                                           
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 220 -------GATPLHIAADIGSTEIIK-CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEI 271
                  G T LH AA + +  I+K  + + G++ +  DEDG+ PI +AA  G  E V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 272 L 272
           L
Sbjct: 240 L 240

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 4e-11
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 112 HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQE 169
             A        G TALH++A + N+ ++ YL+ +      + D    TP++ AA  G+ E
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA 210
            V  L++  A+  A    + T    A A      +D+  + 
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 2e-26
 Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 19/240 (7%)

Query: 52  KDANKRGALHFAAREGKTDVCKYLLEE--LKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
              +   ALH A          +LL        +D Q++ G+T L  AA  G   T + L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 110 FEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA---------------EVDSESD 154
           +  GA   +    G TALH +  +        LL                   +   ++ 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
                + +  + + E      +      AE  D  TPL  AV       + LL  AGA+ 
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 215 NIVAGGA--TPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           N        TPLH+A +  +  +++ LLKAGADP      G+ P+  A  R N     +L
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-11
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 34/156 (21%)

Query: 29  LLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE 88
           LL+       D          D             ++    +  +   E+ +L ++ ++ 
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156

Query: 89  DG----------------------------------ETPLLHAARQGHTETAKYLFEHGA 114
           DG                                   TPL  A         + L + GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVD 150
           +PT     G T L  +    N  L   L + GA   
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV----AGGATPLHIAADIGSTEIIKCLL 240
           TED  T L  AV       LD L+   A    +      G T LH+AA +G    ++ L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 241 KAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGK 300
            AGA   V +  G   + +A          +L       PS P+   D  L   Q  +  
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLL---QPRPSHPRDASDTYLTQSQDCTPD 122

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 3e-25
 Identities = 52/273 (19%), Positives = 95/273 (34%), Gaps = 31/273 (11%)

Query: 12  RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDV 71
           + +++ FL       +   +++   L++     +          +  +     +E     
Sbjct: 36  KMKLEAFLQRLLFPEI---QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE----- 87

Query: 72  CKYLLEELKLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS 130
                   +L+++   DE G TPL       + E  K+L +HG+N     N+G + L  +
Sbjct: 88  VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 131 AGIGNI-------ELLTYLLSKGAEVDS----------ESDAGTPLIWAAGHGQQEAVKV 173
               N         LL YL       DS           +   T    AA +     +  
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 207

Query: 174 LLEHHANPNAETEDNITPLLSAVAAGSLTC----LDLLIQAGANANIV-AGGATPLHIAA 228
           +++    P     +      +             LDL        N   + G T L+IAA
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA 261
            +G+  I+  LL  GADP + ++ G +P+   A
Sbjct: 268 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (183), Expect = 1e-15
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 2/116 (1%)

Query: 19  LNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLL-- 76
           + +  TG     K     L                  K    +    E K  + + L   
Sbjct: 186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 245

Query: 77  EELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAG 132
             +   ++ QD +G+T L  AAR G+      L ++GA+P I +  G   +   AG
Sbjct: 246 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANAN--IVAGGATPLHIAA 228
           +K L     N N +       L   +          L    +N N    +      H++ 
Sbjct: 22  MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 81

Query: 229 DIGSTEIIKCLLKAGADPNV-TDEDGQKPIQVAAARGNREAVEIL 272
           D    E+         + N+  DE G  P+    +  N E V+ L
Sbjct: 82  DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 126

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 1e-24
 Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 10/221 (4%)

Query: 59  ALHFAAREGKTDVCKYLLEELK---LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
            LH A  +G       L+   +    ++D  +   +TPL  A         + L   GA+
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----DAGTPLIWAAGHGQQEA 170
           P      G TA H +    +   L  LL   A    +      D  T L  A     QE 
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 125

Query: 171 VKVLLEHHANPNAETE-DNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAA 228
           V++LLE  A+ +A       +PL+ AV   SL+ + LL+Q GAN N     G++ LH A+
Sbjct: 126 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 185

Query: 229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV 269
             G   +++ L+++GAD ++ +     P+ VA +R   + +
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 8e-08
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAK 107
           +   ALH A+  G   + + L+     D   ++   +TPL+ A  +   +  +
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 99.8 bits (247), Expect = 4e-24
 Identities = 68/261 (26%), Positives = 98/261 (37%), Gaps = 30/261 (11%)

Query: 30  LKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDED 89
           LK+      D    + K        +       A   G T+    LLE    D++  + D
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVD 72

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
           G T L  A    + +  K+L E+GAN   P N G   LH +A  G +++  YL+S+GA V
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 150 DSESDAGTPLIW----------------------------AAGHGQQEAVKVLLEHHANP 181
            + +  G   +                                   ++A + L   H N 
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLL 240
               +   T L  A A G    L LLIQA  + NI    G TPLH AA  G  E  + L+
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 241 KAGADPNVTDEDGQKPIQVAA 261
           +   D    ++ GQ    VA 
Sbjct: 253 ENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 75.9 bits (185), Expect = 6e-16
 Identities = 60/253 (23%), Positives = 93/253 (36%), Gaps = 33/253 (13%)

Query: 50  DIKDANKRGALHFAAREGK-TDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKY 108
            + DA ++         G  TD+   +++  K  V     D     L A   G TE    
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK---FDDGAVFLAACSSGDTEEVLR 58

Query: 109 LFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQ 168
           L E GA+    +  G TALH +    N++++ +L+  GA ++   + G   + AA     
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 169 EAVKVLL---------------------------EHHANPNAETEDNITPLLSAVAAGSL 201
             +   L                           E   N       +I           L
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178

Query: 202 TCLDLLIQAGANANIVAG--GATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQV 259
                 + +G   ++     G T LH+AA  G TE++K L++A  D N+ D DG  P+  
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238

Query: 260 AAARGNREAVEIL 272
           AA  G  EA  IL
Sbjct: 239 AAHWGKEEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 72.4 bits (176), Expect = 8e-15
 Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 47/262 (17%)

Query: 18  FLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADI--KDANKRGALHFAAREGKTDVCKYL 75
           FL A  +G+ +       +L ++G       ADI   + +   ALH A  +   D+ K+L
Sbjct: 44  FLAACSSGDTE----EVLRLLERG-------ADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 76  LEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN 135
           +E    +++  D +G  PL  AA  G+ + A+YL   GA+    ++ G T L  +     
Sbjct: 93  VENGA-NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 136 IE---------------------------LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQ 167
            E                              +L S        + +G T L  AA  G 
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
            E +K+L++   + N +  D  TPL +A   G      +L++   +   V   G T   +
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271

Query: 227 AADIGSTEIIKCLLKAGADPNV 248
           A +    +I+  L +     N+
Sbjct: 272 ADE----DILGYLEELQKKQNL 289

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 94.5 bits (233), Expect = 5e-23
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 5/206 (2%)

Query: 71  VCKYLLEELKLDVD-TQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS--NLGATAL 127
           V   LL +   +++ T D+ GET L  AAR    + AK L + GA+              
Sbjct: 4   VISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 128 HHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETED 187
             +A    +  +              D  TPLI AA    +  V+ L+   A+ NA    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 188 NITPLLSAVAAGSLTCLDLLIQAGANANIVAGGA-TPLHIAADIGSTEIIKCLLKAGADP 246
             T L  A A  +   +++L+   AN +       TPL +AA  GS E  K LL   A+ 
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 247 NVTDEDGQKPIQVAAARGNREAVEIL 272
            +TD   + P  VA+ R + + V +L
Sbjct: 183 EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 79.4 bits (194), Expect = 9e-18
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 12/214 (5%)

Query: 31  KKIAKQLDDQGKGLSKTVADI---KDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD 87
            ++   L  QG       A++    D     +LH AAR  + D  K LL+         +
Sbjct: 2   AQVISDLLAQG-------AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDN 54

Query: 88  EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA 147
                     A          L     N     + G T L  +A +    ++  L++  A
Sbjct: 55  TGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 114

Query: 148 EVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206
           ++++  ++G T L WAA     EAV +LL HHAN +A+ + + TPL  A   GS      
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

Query: 207 LIQAGANANIV-AGGATPLHIAADIGSTEIIKCL 239
           L+   AN  I       P  +A++    +I++ L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 232 STEIIKCLLKAGADPNVT-DEDGQKPIQVAAARGNREAVEILF 273
           + ++I  LL  GA+ N T D+ G+  + +AA     +A + L 
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL 43

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.5 bits (233), Expect = 7e-23
 Identities = 51/223 (22%), Positives = 79/223 (35%), Gaps = 12/223 (5%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHG----- 113
            LH A  E +    + LL      +  +D+DG  PL  +      E   +L         
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 114 -ANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVK 172
              P                +  ++ L     K       +   T L  A G    E  +
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 173 VLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVA--GGATPLHIAADI 230
            L+E+ A+   + + N  PL  A + GSL  ++LL   G +A       G TPL  A   
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 231 GSTEIIKCLL-KAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           G  +    L+ K GA+ ++ D  G K   VA    N +  +  
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 19/233 (8%)

Query: 21  AACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELK 80
           A        ++++   L  +      ++   KD + R  LH++      ++  +LL +++
Sbjct: 7   ACMENEFFKVQEL---LHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 81  LDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLG----ATALHHSAGIGNI 136
                   D                      +        N       T LH + G    
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 137 ELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLS 194
           E+  +L+  GA V  +      PL  AA  G  + +++L     +  N + +   TPL  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 195 AVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD 245
           A+A G      LL+ + GA  ++V   GA    +A +    ++ K  L    D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 222 TPLHIAADIGSTEIIKCLLKA-GADPNVTDEDGQKPIQVAAARGN 265
            PLH A        ++ LL +  +     D+DG+ P+  + +   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
            PL  A    +   V+ LL    +    + +D   PL  +V+  +      L+   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (200), Expect = 2e-18
 Identities = 50/204 (24%), Positives = 76/204 (37%), Gaps = 13/204 (6%)

Query: 89  DGETPLLHAARQGHTETA----KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLS 144
           DG++ L  A             + +    A     +NL  T LH +      E+   LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 145 KGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHA-------NPNAETEDNITPLLSAVA 197
            G + +     G   +  A      A   +L              A   +  T L  A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 198 AGSLTCLDLLIQAGAN--ANIVAGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQK 255
            G L  ++LL+  GA+  A     G T LH+A D+ + +++  LLK GAD N     G  
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 256 PIQVAAARGNREAVEILFPLTSED 279
           P Q+   R +    + L  LT E+
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (200), Expect = 2e-18
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 17/213 (7%)

Query: 59  ALHFAAREGKTDVCKYLLEELKL---DVDTQDEDGETPLLHAARQGHTETAKYLFEHGAN 115
            LH A    +  +   ++ ++K     ++ Q+   +TPL  A      E A+ L   G +
Sbjct: 5   FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 64

Query: 116 PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-------DAGTPLIWAAGHGQQ 168
           P +    G T LH +   G +  +  L          S       +  T L  A+ HG  
Sbjct: 65  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 124

Query: 169 EAVKVLLEHHANPNAETEDN-ITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHI 226
             V++L+   A+ NA+   N  T L  AV   +   + LL++ GA+ N V   G +P  +
Sbjct: 125 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 184

Query: 227 AADIGSTEIIKCLLKAGAD-----PNVTDEDGQ 254
                ST I + L +   +     P   DE+  
Sbjct: 185 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 217

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 6e-09
 Identities = 17/94 (18%), Positives = 32/94 (34%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N    LH A+  G   + + L+         +  +G T L  A    + +    L + GA
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 115 NPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           +    +  G +    + G  +  +   L     E
Sbjct: 170 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-06
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 55  NKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGA 114
           N R ALH A      D+   LL+    DV+     G +P      +  T   + L +   
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

Query: 115 NP 116
             
Sbjct: 203 EN 204

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 3e-16
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query: 334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKA 393
           A E K +G+  F  + Y  A   Y +AI  +P  A   +NR+LC++++ Q E ALAD + 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 394 CRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
              L     KA +  G     +E +DEA        +L  E + 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (160), Expect = 1e-13
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 1/152 (0%)

Query: 89  DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE 148
           D    LL AAR G  +  + L  +GA  T      +     +           L +  + 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 149 VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI 208
                   TPL  AA  G    V+VLL+H A+ NA+    +T L  A        ++LLI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 209 QAGANANIV-AGGATPLHIAADIGSTEIIKCL 239
           + GA+ +       T   I+ D G+ ++ + L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.5 bits (155), Expect = 4e-13
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE 184
             L  +A  G  + +  L++ GA   ++    +PL  AA +G     +VLL    + +A 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-GATPLHIAADIGSTEIIKCLLKAG 243
           T+ + TPL  A + G    +++L++ GA+ N       T LH A +    E+++ L+K G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 244 ADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           AD +   +  +    ++   GN +  EIL
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (128), Expect = 2e-09
 Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEH 112
           D  K+  L  AAR G+ D  + L+        T    G +PL  AA+ GH  T + L   
Sbjct: 1   DLGKK--LLEAARAGQDDEVRILMAN-GAPFTTDW-LGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 113 GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTP-LIWAAGHGQQEAV 171
           G +    + +  T LH +A  G+  ++  LL  GA+V+++       L WA  H  QE V
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL 207
           ++L+++ A+ + +++   T    ++  G+    ++L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query: 333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAK 392
           +  E K +G++A    +   A+  Y++AI  DP +  L SNRS  + + G  + A  D  
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 61

Query: 393 ACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
               L+PDW K   R+ AAL  L +F+EA   + EG+  +  N +L    +  
Sbjct: 62  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 4e-12
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 1/151 (0%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G     + LL    +  D  +  G+T  L     G T  A  L + GA+P +
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH 178
               G + +H +A  G ++ L  L+  GA+V+     G   I  A      AV   L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 179 ANPNAETEDNITPLLSAVAAGSLTCLDLLIQ 209
           ++ +      +TPL  A+  G+   +D+L  
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-09
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)

Query: 123 GATALHHSAGIGNIELLTYLL-SKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANP 181
               L  +A  G+++ +  LL  +    D+ +  G   +     G       LL+  A+P
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 182 NAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLK 241
           N +     +P+  A   G L  L +L++ GA+ N+  G        A       +   L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 242 AGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
           A +D +  D  G  P+++A  RG ++ V+IL
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYL 109
           ++ D      +H A +EG T V  +L    + D+  +D  G TPL  A ++G  +    L
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 110 FEH 112
             H
Sbjct: 153 QGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLEEL 79
             +DA     L  A + G  D+   L   +
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQGHM 156

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 5e-12
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
           K+A + K  G++A+K+KD+  A+  Y +A + DP++ T ++N++  +   G         
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 392 KACRALRPDWP-------KACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           +    +  +         KA  R G +    EK+ +A + + + +        L
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 53  DANKRGALHFAAREGKTDVCKYLLEE-----LKLDVDTQDEDGETPLLHAAR---QGHTE 104
            A K  +L  A +            +      K+ +    E  ET L  A R   +    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 105 TAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAA 163
              +L ++  N    +  G+TALH+     N E L  LL   A ++  +++G TPL  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 164 GHGQQEAVKVLLEHHANP 181
               +   ++L +  +  
Sbjct: 123 RLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSE-------SDAGTPLIWAA---GHGQQEAVKVL 174
            +L  +    +I  L    + G ++  +           T L  A           V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGST 233
           +++  N + +T    T L       +  CL LL++  A+  I    G TPL IA  +   
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 234 EIIKCLLKAGADP 246
              + L +A +  
Sbjct: 128 HCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 43/133 (32%)

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAG-------GATPLHIAA---DIGS 232
           A+T   +  L  AV    +  L      G +               T LH+A    D  S
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 233 TEIIKCLLKAGADP---------------------------------NVTDEDGQKPIQV 259
             I+  L++   +                                   + +E G+ P+ +
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 260 AAARGNREAVEIL 272
           A    +    E+L
Sbjct: 121 AKRLKHEHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 7e-07
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 7/139 (5%)

Query: 12  RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAR---EGK 68
             ++     A  T ++  L +      D  +   K            ALH A R      
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTE---KIPLANGHEPDETALHLAVRSVDRTS 60

Query: 69  TDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALH 128
             +  +L  +   ++D Q   G T L +     + E  K L    A+  I +  G T L 
Sbjct: 61  LHIVDFL-VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 119

Query: 129 HSAGIGNIELLTYLLSKGA 147
            +  + +      L    +
Sbjct: 120 IAKRLKHEHCEELLTQALS 138

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 3e-11
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 2/154 (1%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
             L  AA +G  E    L ++  N    +  G TAL              LL        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 152 ESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
           +      +  AA  G  + ++ LLE  A+ N E  +   PL  A   G L  ++ L++  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 212 ANANIVAG--GATPLHIAADIGSTEIIKCLLKAG 243
           A+        G T   +A   G  E++  +   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 4/155 (2%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G  +    LL+   ++V+ Q+  G T  L   + G+ E A+ L   GANP +
Sbjct: 4   ELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTA-LQVMKLGNPEIARRLLLRGANPDL 61

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHH 178
               G   +H +A  G ++ L  LL   A+V+ E + G   +  A       V   L  H
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 179 ANP--NAETEDNITPLLSAVAAGSLTCLDLLIQAG 211
                        T    A   G    + L+   G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 3e-08
 Identities = 33/150 (22%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 125 TALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAE 184
             L  +A  G++E LT LL     V++++  G   +     G  E  + LL   ANP+ +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA 244
                  +  A  AG L  L  L++  A+ NI           A       +   L    
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 245 DP--NVTDEDGQKPIQVAAARGNREAVEIL 272
                  +  G     +A   G  E V ++
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 4/28 (14%), Positives = 9/28 (32%)

Query: 50  DIKDANKRGALHFAAREGKTDVCKYLLE 77
             ++     A   A   G+ +V   +  
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 56.5 bits (135), Expect = 3e-10
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 16/154 (10%)

Query: 321 KELPEVRPEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDF---------------D 364
           KE  E+  + K + A   K +G   FK   Y+ AV  Y + + +               +
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 365 PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANA 424
                   N ++C+++L +   A+        L     K  YR G A  L+ +F+ A   
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 425 FYEGVTLDPENKELVFAFREAVEAGRKFHGTDKK 458
           F + + ++P+NK          +  ++ +  D++
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR 154

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 56.2 bits (134), Expect = 4e-10
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 17/144 (11%)

Query: 321 KELPEVRPEIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSD------------ 367
           K + +   E K ++A   K  G+E FK+ +   A+  Y +A+DF                
Sbjct: 3   KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 62

Query: 368 ----ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAAN 423
                +   N + C+ +      A+  A     +  +  KA Y+ G A       +EA  
Sbjct: 63  KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 122

Query: 424 AFYEGVTLDPENKELVFAFREAVE 447
             Y+  +L+P N ++  ++   V 
Sbjct: 123 NLYKAASLNPNNLDIRNSYELCVN 146

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 5e-10
 Identities = 39/117 (33%), Positives = 59/117 (50%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHAL 388
              K+A E K + ++ FK KDY  A+  Y+QAI+ +PS+A    NRSL ++R     +AL
Sbjct: 5   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 64

Query: 389 ADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
            DA     L   + K  YR  A+   L KF  A   +   V + P +K+    ++E 
Sbjct: 65  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 8e-10
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 92  TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS 151
             LL ++ +G  +  + +     +P++P++ G TALH++   G+ E++ +L+  G  V++
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 152 ESDAGTPLIWAAGHGQQEAV-KVLLEHHANPNAETEDNI---TPLLSAVAAGSLTCLDLL 207
               G   +  A       V K L+E  A   A T  ++         +  G   C   L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 208 IQAGAN 213
                 
Sbjct: 123 YGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-09
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 60  LHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIP 119
           L  ++ EG+ D+ + ++ E   D    +++G T L +A   GHTE  K+L + G N    
Sbjct: 5   LLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 120 SNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG----TPLIWAAGHGQQEAVKVLL 175
            + G T LH +A   N+++  +L+  GA V + + +              G  +  + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 176 EHHAN 180
                
Sbjct: 124 GVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-09
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANI 216
             L+ ++  G+ + V+ ++    +P+   ++ IT L +AV AG    +  L+Q G N N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 217 VA-GGATPLHIAADIGSTEIIKCLLKAGADPN-VTDEDGQKPIQVAAA--RGNREAVEIL 272
               G TPLH AA   + ++ K L+++GA    +T  D Q           G  +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA----------------IDFDPSDATLLS 372
           +I   + + K  G+  FK +++ MA+  YT+                     P   + + 
Sbjct: 22  KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVL 81

Query: 373 NRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLD 432
           N   C +++   + A+        + P   KA YR     + L+++D+A     +   + 
Sbjct: 82  NIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141

Query: 433 PENKELVFAFREAVEAGRKFHGTDKK 458
           PE+K +     +  +  +     +K 
Sbjct: 142 PEDKAIQAELLKVKQKIKAQKDKEKA 167

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 17/98 (17%), Positives = 30/98 (30%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
                ++Q    +A+D Y +AI+  P       N +      G    A         L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
               +        R     +EA   + + + + PE   
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 15/98 (15%), Positives = 30/98 (30%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G     Q +  +A+  + +A+  DP+      N           + A+A      +L P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +                  D A + +   + L P   +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 1/110 (0%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
           E++    +A     +   ++     A D Y  A+   P+ A  L+N +      G  E A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           +   +    + P++  A     + L+   K  EA   + E + + P   +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 9/73 (12%), Positives = 22/73 (30%)

Query: 341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPD 400
               ++  D+  A     Q    +P +  +L   S    +  + + +   +       P 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 401 WPKACYREGAALR 413
             +A    G   +
Sbjct: 66  LAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 17/77 (22%), Positives = 32/77 (41%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
             +   +Q +   AV  Y +A++  P  A   SN +    + G+ + AL   K    + P
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 400 DWPKACYREGAALRLLE 416
            +  A    G  L+ ++
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 9/58 (15%), Positives = 16/58 (27%)

Query: 380 RLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
           + G  E A           PD         +      + D +A+     +  +P   E
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 30/96 (31%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
           +   A  +     A++   +AI   P DA+L S+        G  E A         L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           ++     +    ++  +   + A        L    
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE 97

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 14/75 (18%), Positives = 22/75 (29%)

Query: 379 IRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKEL 438
           +  GQ + AL          P            L +   F+ A     + + L PE    
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 439 VFAFREAVEAGRKFH 453
               R  V+A +   
Sbjct: 67  ASQLRHLVKAAQARK 81

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 15/145 (10%)

Query: 329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQA---------------IDFDPSDATLLSN 373
           E  +++   K RG   FK+  Y  A+  Y +                            N
Sbjct: 8   EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 67

Query: 374 RSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDP 433
            ++C ++L     A+        L  +  K   R G A   +  F+ A   F + + L P
Sbjct: 68  LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127

Query: 434 ENKELVFAFREAVEAGRKFHGTDKK 458
            NK          +  R+    +KK
Sbjct: 128 NNKAAKTQLAVCQQRIRRQLAREKK 152

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
            +A      G  A  +KD+  A+DA++         + +  N    +  L     A    
Sbjct: 3   VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 59

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
                       A ++ G      EK+D A     E +     N
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 123 GATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPN 182
            A  L  +A  G +E +  LL  GA  ++ +  G   I     G     ++LL H A PN
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 183 AETEDNITPLLSAVAAGSLTCLDLLIQAGANAN--IVAGGATPLHIAADIGSTEIIKCLL 240
                 +T  +   A        +++           A G  P+ +A ++G  ++ + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 241 KA 242
            A
Sbjct: 123 AA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 28/124 (22%), Positives = 37/124 (29%), Gaps = 1/124 (0%)

Query: 88  EDGETPLLHAARQGHTETAKYLFEHGANP-TIPSNLGATALHHSAGIGNIELLTYLLSKG 146
           E     L  AA +G  E  + L E GANP    S           G   +  L  L    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 147 AEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDL 206
                 +    P+  AA  G  + + VL    A  +        P+  A   G       
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 207 LIQA 210
           L  A
Sbjct: 121 LRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-05
 Identities = 16/118 (13%), Positives = 30/118 (25%)

Query: 59  ALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTI 118
            L  AA  G+ +  + LLE                 +             L     N   
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 119 PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLE 176
           P+ L       +       L+    +       ++    P+  A   G ++  + L  
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 2e-04
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 155 AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA 214
           +   L  AA  G+ E V+ LLE  ANPNA       P+   +   +     LL+      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 215 NIVAGGAT-PLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL 272
                  T P+H AA  G  + +  L +AGA  +V D  G+ P+ +A   G+R+    L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 3/110 (2%)

Query: 329 EIKKKAAEA-KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHA 387
            +           G  + KQ      V   + +  +       L +         Q   A
Sbjct: 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQA 171

Query: 388 LADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            +  +    L P   +   +                 +   + +      
Sbjct: 172 ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 33/114 (28%)

Query: 332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADA 391
           +   +    G    ++ D   AV  +  A+  DP                 Q   A++  
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

Query: 392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREA 445
           + C  L+PD   A      +        +A     + +   P    LV    E 
Sbjct: 77  RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 130

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 23/98 (23%), Positives = 41/98 (41%)

Query: 340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRP 399
            G       +Y  AVD +T A+   P+D  L +          Q+E A+A  +    L+P
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 400 DWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
            + ++ Y  G +   L    EA   F E + +  +++ 
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 341 GDEAFKQKDYLMAVDAYTQAI-------DFDPSDATLLSNRSLCWIRLGQAEHALADAKA 393
           G  A+ + DY        QA+              ++L   S    + G  + AL   K 
Sbjct: 12  GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71

Query: 394 CRALRPDWPKACYREGAALRLLEK 417
              L P+  +A         ++ K
Sbjct: 72  LLELDPEHQRANGNLKYFEYIMAK 95

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 2/116 (1%)

Query: 322 ELPEVRPEIKKKAAEAKA-RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR 380
             P V+     K  +          + +    A      AI+ + ++ T+   R +    
Sbjct: 30  PNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKS 89

Query: 381 LGQA-EHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN 435
           L +     +    A    +P   +  +     +  L    +      + +  D +N
Sbjct: 90  LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 90  GETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEV 149
            +   + A + G  +  K     G +       G   LH++A  G +E+L +LL KGA++
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 150 DSESDAGTPLIWAAG-HGQQEAVKVLLEHHANPNAETEDNITPLLSA 195
           ++        + +A   G    VK+LL   A+   +  D +T L + 
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT 108

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 31/142 (21%)

Query: 319 PMKELPEVRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPS------------ 366
           P+KE+          A  A +         +Y  A     +A++   +            
Sbjct: 2   PLKEVVG--------AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGF 53

Query: 367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKA-----------CYREGAALRLL 415
           DA   +  +     L   + AL  A           +             Y    AL  L
Sbjct: 54  DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL 113

Query: 416 EKFDEAANAFYEGVTLDPENKE 437
            +  EA   F + V +  E K 
Sbjct: 114 GRGAEAMPEFKKVVEMIEERKG 135

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 11/95 (11%), Positives = 18/95 (18%)

Query: 343 EAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP 402
            AF       +   Y + +                   L     +  + +          
Sbjct: 217 NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 276

Query: 403 KACYREGAALRLLEKFDEAANAFYEGVTLDPENKE 437
                   AL  L    E    F     +DP    
Sbjct: 277 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 350 YLMAVDAYTQAIDF----DPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKAC 405
             + +    Q +      D   A LL  R + +  LG    A  D     A+RPD P+  
Sbjct: 15  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 74

Query: 406 YREGAALRLLEKFDEAANAFYEGVTLDPEN 435
              G  L     FD A  AF   + LDP  
Sbjct: 75  NYLGIYLTQAGNFDAAYEAFDSVLELDPTY 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.98
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.84
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.83
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.81
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.8
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.77
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.65
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.51
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.39
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.29
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.26
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.21
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.21
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.19
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.08
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.01
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.95
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.91
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.78
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.67
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.63
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.42
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.42
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.98
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.78
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.32
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	85.38
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	84.41
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	84.06

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=303.16  Aligned_cols=277  Identities=31%  Similarity=0.480  Sum_probs=217.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~   95 (458)
                      ++||.||..|++++|++|++.    |+++     +..|..|.||||+|+..|+.+++++|+++ |++++.++..|+||||
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~----g~~i-----n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~   71 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR----GASP-----NVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLH   71 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT----TCCS-----CCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC----CCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHH
Confidence            689999999999999999986    4433     56788999999999999999999999998 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHH----------------------------------------------------------------
Q 012683           96 HAARQGHTETAKYLFE----------------------------------------------------------------  111 (458)
Q Consensus        96 ~A~~~g~~~~v~~Ll~----------------------------------------------------------------  111 (458)
                      +|+..|+.+++++|+.                                                                
T Consensus        72 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~l  151 (408)
T d1n11a_          72 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL  151 (408)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHH
Confidence            9998888777666554                                                                


Q ss_pred             --cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC----------------------------------CC
Q 012683          112 --HGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES----------------------------------DA  155 (458)
Q Consensus       112 --~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------------------------------~~  155 (458)
                        +|++++..+..|.+|||.|+..|+.+++++|+.+|++++..+                                  .+
T Consensus       152 l~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (408)
T d1n11a_         152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  231 (408)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             HHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCC
Confidence              344444445556666666666666666666666555443211                                  11


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       156 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      .||+++|+..+..++++++...+...+..+..|.||++.++..++.+++++|+++|++++.. ..+.||||.++..++.+
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~  311 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK  311 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             CCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcce
Confidence            14555555555555555555555566666777888999999999999999999999999877 67899999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCCCCCCCcchhhHHHHHHhhccchhHHh
Q 012683          235 IIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSEDPSIPKWTVDGILEYMQSESGKQLEET  305 (458)
Q Consensus       235 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (458)
                      +++++++.|++++.+|..|+||||+|+.+|+.++|++|+++|+. ++..+.++.+++.++...  +.++.+
T Consensus       312 ~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd-~n~~d~~G~t~L~~A~~~--~~~~iv  379 (408)
T d1n11a_         312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRL--GYISVT  379 (408)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCSSSCCHHHHHHHT--TCHHHH
T ss_pred             eeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc--CCHHHH
Confidence            99999999999999999999999999999999999999999865 556666677777666544  444444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=277.66  Aligned_cols=218  Identities=31%  Similarity=0.411  Sum_probs=208.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      +++.|+.+|..|+++.|+.++...+..++.+|..|+||||+|+..|+.+++++|++.+......+..+.++++.++..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            56899999999999999999888788999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Q 012683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANA  214 (458)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~  214 (458)
                      .+++++|++++++++..+..+ ||||+|+..|+.+++++|+++|++++..+.+|.||||+|+..++.+++++|++.|.++
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            999999999999998777665 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 012683          215 NIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (458)
Q Consensus       215 ~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (458)
                      +.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+| ..|+.+++++|++
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            988 7899999999999999999999999999999999999999998 5799999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-38  Score=285.44  Aligned_cols=229  Identities=28%  Similarity=0.304  Sum_probs=190.5

Q ss_pred             hhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683           50 DIKDANKRGALHFAAREGKTDVCKYLLEELKLD---VDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA  126 (458)
Q Consensus        50 ~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  126 (458)
                      ...+.+|.||||+||.+|+.+++++|++. |++   ++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            34578999999999999999999999997 766   67788999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-----------cHHHHHHhCC----CHHHHHHHHhcCCCCCCCCCCCCcH
Q 012683          127 LHHSAGIGNIELLTYLLSKGAEVDSESDAG-----------TPLIWAAGHG----QQEAVKVLLEHHANPNAETEDNITP  191 (458)
Q Consensus       127 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-----------t~l~~A~~~~----~~~~~~~Ll~~~~~~~~~~~~~~t~  191 (458)
                      ||+|+..++.+++++|++.+..........           +....+....    ...........+.+++.++.+|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            999999999999999998765543221110           0011111111    1112222233466778889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683          192 LLSAVAAGSLTCLDLLIQAGANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV  269 (458)
Q Consensus       192 l~~a~~~~~~~~~~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  269 (458)
                      ||+|+..++.+++++|++.+++.+..  ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+++.+++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999999998865  5799999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCC
Q 012683          270 EILFPLTSED  279 (458)
Q Consensus       270 ~~Ll~~~~~~  279 (458)
                      ++|+++|++.
T Consensus       242 ~~Ll~~Ga~~  251 (255)
T d1oy3d_         242 RLLRAHGAPE  251 (255)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHcCCCC
Confidence            9999999863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=266.87  Aligned_cols=216  Identities=31%  Similarity=0.414  Sum_probs=203.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLL   95 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~   95 (458)
                      ..|+.++..|+++.|+.++..        .+...+.+|.+|+||||+||..|+.+++++++.. +......+..+.++++
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~--------~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~   75 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLH   75 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHh--------CCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-cccccccccccccccc
Confidence            357889999999999999987        4556788999999999999999999999999998 7888888889999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHH
Q 012683           96 HAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVL  174 (458)
Q Consensus        96 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~L  174 (458)
                      .++..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..+ ||||+|+..++.+++++|
T Consensus        76 ~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L  155 (223)
T d1uoha_          76 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL  155 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhh
Confidence            9999999999999999999999999999999999999999999999999999998777666 999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 012683          175 LEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLK  241 (458)
Q Consensus       175 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~  241 (458)
                      ...+.+++..+.+|+||||.|+..|+.+++++|++.|++++.. ..|+||||+| ..|+.+++++|++
T Consensus       156 ~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999999999999999999999999999999999999987 7799999998 5799999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-36  Score=264.88  Aligned_cols=219  Identities=26%  Similarity=0.308  Sum_probs=200.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHc
Q 012683           57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPT---IPSNLGATALHHSAGI  133 (458)
Q Consensus        57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~  133 (458)
                      +||||+||..|+.++|+.|++..+.+++.+|.+|.||||+|+..|+.+++++|+++|++++   ..+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999998788999999999999999999999999999999999876   4577899999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC---CCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          134 GNIELLTYLLSKGAEVDSESD---AGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~---~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                      +..++++.++..+...+....   ..++++.++..++.++++.|+..|.+.+..+..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            999999999998876654332   33999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcccc-CCCCcHHHHHHhcCcHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          211 G-ANANIV-AGGATPLHIAADIGSTEIIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       211 g-~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      | .+++.. ..|.||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+   +.+++++|+++|.+
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            7 567766 789999999999999999999996 69999999999999999998   46899999987753

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=278.91  Aligned_cols=250  Identities=31%  Similarity=0.403  Sum_probs=233.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHH
Q 012683           15 VQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPL   94 (458)
Q Consensus        15 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L   94 (458)
                      ...++.|+..|+.+++++|++..    ..     .+..+.+|.+|||+|+..|+.+++++|+.+ |.+++..+..|.||+
T Consensus       133 ~~~l~~a~~~~~~~~v~~ll~~~----~~-----~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l  202 (408)
T d1n11a_         133 FTPLHVAAKYGKVRVAELLLERD----AH-----PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPL  202 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT----CC-----TTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcC----CC-----CCcCCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcc
Confidence            45789999999999999999862    22     345677899999999999999999999998 999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHH
Q 012683           95 LHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKV  173 (458)
Q Consensus        95 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~  173 (458)
                      |.++...+.++...|+..+......+..|.|||+.|+..++.+++++++..+...+..+..+ ||++.|+..++.+++++
T Consensus       203 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~  282 (408)
T d1n11a_         203 HIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV  282 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHH
Confidence            99999999999999999998888889999999999999999999999999998887766555 99999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCC
Q 012683          174 LLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDED  252 (458)
Q Consensus       174 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  252 (458)
                      |+++|++++..+..+.|||+.++..++.++++++++.|++++.. ..|.||||+|++.|+.++|++|+++|++++.+|.+
T Consensus       283 Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~  362 (408)
T d1n11a_         283 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD  362 (408)
T ss_dssp             HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSS
T ss_pred             HHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999988 78999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHhhcC
Q 012683          253 GQKPIQVAAARGNREAVEILFP  274 (458)
Q Consensus       253 g~t~l~~A~~~~~~~~v~~Ll~  274 (458)
                      |+||||+|+++|+.++|++|..
T Consensus       363 G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         363 GTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999987743

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-34  Score=258.25  Aligned_cols=259  Identities=25%  Similarity=0.363  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~   91 (458)
                      -...+.|+.||+.||+++|++|++.    |+++    ....+..|.||||+|+..|+.+++++|++. +..+...+..+.
T Consensus         3 ~~~~~~L~~Ai~~~~~e~vk~Ll~~----G~di----n~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~~~~~~   73 (285)
T d1wdya_           3 VEDNHLLIKAVQNEDVDLVQQLLEG----GANV----NFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGA   73 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT----TCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHC----CCCc----CccCCCCCCCHHHHHHHcCCHHHhhhhccc-cccccccccccc
Confidence            3567889999999999999999987    3333    123445799999999999999999999987 888888888999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------CCCcHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES-----------DAGTPLI  160 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-----------~~~t~l~  160 (458)
                      +|.+.++..+..+...++++...+....+..+.++++.|+..++..++..++....+.+...           .+.||||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T d1wdya_          74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             hhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHH
Confidence            99999999999999999999988888888899999999999999999999999877665322           2348999


Q ss_pred             HHHhCCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          161 WAAGHGQQEAVKVLLEH-HANPNAETEDNITPLLSAVAAG----SLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       161 ~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      +|+..|+.+++++|+++ |++++..+..|.+++..+...+    ..+++++|+++|++++.. ..|.||||.|+..|+.+
T Consensus       154 ~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~  233 (285)
T d1wdya_         154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHH
Confidence            99999999999999975 8899999999999888765543    457899999999999987 77999999999999999


Q ss_pred             HHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          235 IIKCLLK-AGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       235 iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      +|++|++ .|++++.+|.+|+||||+|+.+|+.++|++|+++|++.
T Consensus       234 ~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999998 59999999999999999999999999999999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=8.3e-36  Score=272.84  Aligned_cols=244  Identities=30%  Similarity=0.365  Sum_probs=206.3

Q ss_pred             hHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683           27 LDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA  106 (458)
Q Consensus        27 ~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  106 (458)
                      .+.++.....................+.++.|+|+.||..|++++|++||++ |++++..|.+|.||||+|+..|+.++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv   89 (291)
T d1s70b_          11 NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMV   89 (291)
T ss_dssp             HHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceee
Confidence            4455555443322222222222233445677999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhc--------
Q 012683          107 KYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEH--------  177 (458)
Q Consensus       107 ~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~--------  177 (458)
                      ++|+++|++....+..+.+||+.++..++.++++.|++.|...+..+..+ +++++|+..+..++++.++..        
T Consensus        90 ~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~  169 (291)
T d1s70b_          90 KFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA  169 (291)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHH
T ss_pred             eeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccc
Confidence            99999999999999999999999999999999999999998887666544 999999999888888887742        


Q ss_pred             -------------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHH
Q 012683          178 -------------------HANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK  237 (458)
Q Consensus       178 -------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~  237 (458)
                                         ..+....+..|.||||.|+..|+.++++.|++.|++++.. ..|.||||+|+..|+.++|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~  249 (291)
T d1s70b_         170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR  249 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHH
Confidence                               2234556788999999999999999999999999999987 78999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          238 CLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       238 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      +|+++|++++.+|..|+||||+|++    +++++|.+.
T Consensus       250 lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         250 ILVENLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            9999999999999999999999974    566666543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=9.3e-36  Score=270.40  Aligned_cols=221  Identities=25%  Similarity=0.400  Sum_probs=188.0

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHh-------CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 012683           54 ANKRGALHFAAREGKTDVCKYLLEE-------LKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATA  126 (458)
Q Consensus        54 ~~g~t~L~~A~~~g~~~~v~~ll~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  126 (458)
                      .+|.||||+||..|+.++|+.|+.+       .|+++|.+|.+|.||||+|+..|+.++|++|+++|++++..+..|.||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            4699999999999999988877532       389999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCC---CCCCCCCC-CcHHHHHHhCCCHH---HHHHHHhcCC--------CCCCCCCCCCcH
Q 012683          127 LHHSAGIGNIELLTYLLSKGA---EVDSESDA-GTPLIWAAGHGQQE---AVKVLLEHHA--------NPNAETEDNITP  191 (458)
Q Consensus       127 L~~A~~~~~~~~~~~Ll~~~~---~~~~~~~~-~t~l~~A~~~~~~~---~~~~Ll~~~~--------~~~~~~~~~~t~  191 (458)
                      |+.|+..++.++++++...+.   .++..+.. .++.+.+...+..+   .+..+.....        ..+..+..|.|+
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            999999999999999887642   33333333 38888888877543   3444444322        234566789999


Q ss_pred             HHHHHHcCCHHHHHHHH-HcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683          192 LLSAVAAGSLTCLDLLI-QAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAV  269 (458)
Q Consensus       192 l~~a~~~~~~~~~~~Ll-~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  269 (458)
                      ||.++..++.+++++++ ..+.+.+.. ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.++|
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999998755 567777765 7799999999999999999999999999999999999999999999999999


Q ss_pred             HhhcC
Q 012683          270 EILFP  274 (458)
Q Consensus       270 ~~Ll~  274 (458)
                      ++|++
T Consensus       271 ~lL~~  275 (277)
T d2fo1e1         271 DIFDR  275 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-33  Score=253.31  Aligned_cols=227  Identities=24%  Similarity=0.196  Sum_probs=178.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGE   91 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~   91 (458)
                      ..+.++||.||+.|+.+++++|++...+      ....+.++.+|.||||+||..|+.+++++|++. |++++..|..|.
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~------~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~   79 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGH   79 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCC------cccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccc
Confidence            4567899999999999999999987321      234567889999999999999999999999998 999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------CCCcHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCC-
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSN----------LGATALHHSAGIGN----IELLTYLLSKGAEVDSESDAG-  156 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~-  156 (458)
                      ||||+|+..|+.+++++|++.+........          ...+....+.....    ..........+.+++..+..+ 
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            999999999999999999987654322111          11111111111111    111111122234444444444 


Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAE-TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTE  234 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~  234 (458)
                      ||||+|+..++.+++++|++.+.+.+.. +..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            9999999999999999999999998864 678999999999999999999999999999988 77999999999999999


Q ss_pred             HHHHHHHcCCC
Q 012683          235 IIKCLLKAGAD  245 (458)
Q Consensus       235 iv~~Ll~~g~~  245 (458)
                      ++++|+++|++
T Consensus       240 i~~~Ll~~Ga~  250 (255)
T d1oy3d_         240 LARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999996

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-33  Score=243.66  Aligned_cols=218  Identities=25%  Similarity=0.350  Sum_probs=196.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC---CCCCCCCc
Q 012683           16 QQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVD---TQDEDGET   92 (458)
Q Consensus        16 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~---~~~~~g~t   92 (458)
                      .+||.||..|+.+.|++|++.        .+...+.+|.+|.||||+|+..|+.+++++|+++ |++++   ..+..|.+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~--------~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHS--------KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHH--------CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHc--------CCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hccccccccccccccc
Confidence            489999999999999999986        3345678899999999999999999999999997 88875   45778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHH
Q 012683           93 PLLHAARQGHTETAKYLFEHGANP--TIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQE  169 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~  169 (458)
                      |+|+++..+..++++.++..+...  ...+..+.|+++.++..++.++++.|+..+......+..+ ||||+|+..|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence            999999999999999999888654  4467789999999999999999999999999887766555 9999999999999


Q ss_pred             HHHHHHhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 012683          170 AVKVLLEHH-ANPNAETEDNITPLLSAVAAGSLTCLDLLIQ-AGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGAD  245 (458)
Q Consensus       170 ~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  245 (458)
                      ++++|++.+ .+++.++.+|+||||+|+..|+.+++++|++ .|++++.. ..|.||||+|+   +.+++++|+++|+|
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999999987 6788999999999999999999999999996 59999988 78999999998   45899999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=241.29  Aligned_cols=216  Identities=27%  Similarity=0.367  Sum_probs=194.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683           55 NKRGALHFAAREGKTDVCKYLLE---ELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSA  131 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  131 (458)
                      +|+||||+||..|+.++|+.|++   ..|++++.+|..|+||||+|+..|+.+++++|+++|++.+..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            69999999999999999999986   248999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCC----CCC-CCCcHHHHHHhCCCHHHHHHHHhcCCCCC-CCCCCCCcHHHHHHHcCCHHHHH
Q 012683          132 GIGNIELLTYLLSKGAEVD----SES-DAGTPLIWAAGHGQQEAVKVLLEHHANPN-AETEDNITPLLSAVAAGSLTCLD  205 (458)
Q Consensus       132 ~~~~~~~~~~Ll~~~~~~~----~~~-~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~  205 (458)
                      ..++.++++.+........    ... ...++++.+.........+.|.....+.. .....+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999999998877543322    111 22389999999999999999988776654 44667999999999999999999


Q ss_pred             HHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 012683          206 LLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVE  270 (458)
Q Consensus       206 ~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~  270 (458)
                      .+++.|.+++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++||
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999998887 77999999999999999999999999999999999999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.2e-33  Score=242.05  Aligned_cols=197  Identities=26%  Similarity=0.303  Sum_probs=164.8

Q ss_pred             CCCcHHHHHHHcCCHHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 012683           55 NKRGALHFAAREGKTDVCK----YLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHS  130 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~----~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  130 (458)
                      +|.||||+|+..|+.+++.    ++... +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..|..|.|||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~-~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC-CCCcccCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999865544    44444 788999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          131 AGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       131 ~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                      +..++.++++.|+..+.......                          ........|.||+|.|+..++.+++++++..
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~--------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  133 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHS--------------------------ILKATNYNGHTCLHLASIHGYLGIVELLVSL  133 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSC--------------------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccchhhhhcccccccc--------------------------cccccccccchhhhHHhhcCChhheeeeccc
Confidence            99999999999988775542111                          1223445678899999889999999999988


Q ss_pred             CCCcccc--CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCC
Q 012683          211 GANANIV--AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSE  278 (458)
Q Consensus       211 g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  278 (458)
                      |+.++..  .+|.||||+|++.|+.+++++|+++|+|++.+|..|+||||+|+.+++.+++++|++....
T Consensus       134 ~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            8888766  4699999999999999999999999999999999999999999999999999999887543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.98  E-value=1.5e-31  Score=231.82  Aligned_cols=203  Identities=31%  Similarity=0.375  Sum_probs=186.1

Q ss_pred             HHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 012683           69 TDVCKYLLEELKLDVDT-QDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGA  147 (458)
Q Consensus        69 ~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  147 (458)
                      .++|++|+++ |++++. .|.+|.||||+||..|+.+++++|++.|++++..+..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4799999998 999987 58999999999999999999999999999999999999999999999999888777776554


Q ss_pred             CCC--CCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHH
Q 012683          148 EVD--SESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPL  224 (458)
Q Consensus       148 ~~~--~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L  224 (458)
                      ...  ....+.++.+.+.........+.|...+++++..+..|.|||+.++..+...+++.+++.+.+++.. ..|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence            432  2223348888899999999999999999999999999999999999999999999999999999987 7799999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhh
Q 012683          225 HIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEIL  272 (458)
Q Consensus       225 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  272 (458)
                      |+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+.++|++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.5e-31  Score=242.82  Aligned_cols=216  Identities=26%  Similarity=0.390  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCc
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGET   92 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t   92 (458)
                      ...++|+.||..|++++|++|++.    |+++     +..|.+|.||||+|+..|+.++|++|+++ +.+....+..+.+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~----Gadv-----n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~  108 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLER----GADI-----NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWI  108 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH----CCCT-----TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHC----CCCC-----CccCCCCCcHHHHHHhcCCceeeeeeccc-ccccccccccccc
Confidence            355789999999999999999987    4433     67889999999999999999999999998 8898899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCC-----------------------
Q 012683           93 PLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSK-GAE-----------------------  148 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~-----------------------  148 (458)
                      ||+.++..|+.++++.|+++|...+..+..+.+++++|+..+..+++..++.. +.+                       
T Consensus       109 ~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T d1s70b_         109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccc
Confidence            99999999999999999999999999999999999999999888888887753 221                       


Q ss_pred             ----CCCCCCCCcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcH
Q 012683          149 ----VDSESDAGTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATP  223 (458)
Q Consensus       149 ----~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~  223 (458)
                          ......+.||||.|+..|+.++++.|++.|++++..+.+|+||||+|+..|+.++|++|+++|++++.. +.|.||
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~Ta  268 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             ccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence                112333449999999999999999999999999999999999999999999999999999999999988 679999


Q ss_pred             HHHHHhcCcHHHHHHHHHc
Q 012683          224 LHIAADIGSTEIIKCLLKA  242 (458)
Q Consensus       224 L~~A~~~~~~~iv~~Ll~~  242 (458)
                      ||+|++    +++++|.+.
T Consensus       269 L~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         269 FDVADE----DILGYLEEL  283 (291)
T ss_dssp             TTSCCS----GGGHHHHHH
T ss_pred             HHHHHH----HHHHHHHHH
Confidence            999986    577777653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-29  Score=230.75  Aligned_cols=259  Identities=29%  Similarity=0.348  Sum_probs=222.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 012683           55 NKRGALHFAAREGKTDVCKYLLEELKLDVDTQD-EDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGI  133 (458)
Q Consensus        55 ~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  133 (458)
                      ++.|+||.|+..|++++|++|+++ |++++.++ ..|.||||+|+..|+.+++++|++.+......+..+.+|.+.+...
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            357999999999999999999998 99998765 5799999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHcCCHH
Q 012683          134 GNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE----------TEDNITPLLSAVAAGSLT  202 (458)
Q Consensus       134 ~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~~~~  202 (458)
                      +..+...++++...+....+..+ ++++.|+..++..++..++....+++..          ...|.||||+|+..|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            99999999999877665544444 9999999999999999999887765543          345899999999999999


Q ss_pred             HHHHHHHc-CCCcccc-CCCCcHHHHHHhc----CcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          203 CLDLLIQA-GANANIV-AGGATPLHIAADI----GSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       203 ~~~~Ll~~-g~~~~~~-~~g~t~L~~A~~~----~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ++++|+++ |++++.. ..|.++++.+...    +..+++++|+++|++++.++..|.||||+|+..|+.++|++|++..
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            99999975 7888877 5678777766544    4568999999999999999999999999999999999999999876


Q ss_pred             CCCCCCCCcchhhHHHHHHhhccchhHHhhhhhcCCCCCC
Q 012683          277 SEDPSIPKWTVDGILEYMQSESGKQLEETRNLKENNAPKD  316 (458)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (458)
                      ..+.+..+.++.|++  ..+......+.++.|++.|+.++
T Consensus       243 g~din~~d~~G~TpL--~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         243 HIEINDTDSDGKTAL--LLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SCCTTCCCTTSCCHH--HHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCCCcCCCCCCCCHH--HHHHHcCCHHHHHHHHHCCCCCC
Confidence            655555555555544  55556678999999999998875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-29  Score=217.22  Aligned_cols=218  Identities=25%  Similarity=0.350  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~   93 (458)
                      +.++||.||..|++++|+.|++.+.+.+.++     +..|.+|.||||+|+..|+.+++++|++. |++++.....+.++
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-----n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-----DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTA   76 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-----CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CccCCCCCccceehhcccccccccccccc-cccccccccccccc
Confidence            5679999999999999999999887766664     56788999999999999999999999997 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCcHHHHHHhCCC
Q 012683           94 LLHAARQGHTETAKYLFEHGAN----PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSES--DAGTPLIWAAGHGQ  167 (458)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~t~l~~A~~~~~  167 (458)
                      ++.|...++.++++.+......    .+.......++|+.+...........|.....+.....  .+.++++.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            9999999999999988865433    34455677899999999999999999998876654333  33499999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHH
Q 012683          168 QEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIK  237 (458)
Q Consensus       168 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~  237 (458)
                      ..+++.+++.|.+.+..+.+|.||||+|+..|+.+++++|+++|++++.. .+|.||||+|++.|+.++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999999999999999999999999987 78999999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=4.1e-29  Score=226.21  Aligned_cols=223  Identities=22%  Similarity=0.267  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhh----hcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLD----DQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDE   88 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~   88 (458)
                      .+.++||.||..|+.++|+.|+....    ..|+++     +.+|.+|.||||+|+..|+.++|++|+++ |++++.++.
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-----n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~~  105 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-----NAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNK  105 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-----TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-----cccCCCCCeeecccccccccccccccccc-ccccccccc
Confidence            46789999999999999999986532    234433     56889999999999999999999999998 999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcCCH---HHHHHHHhCCCCC--------CCCC-
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHG---ANPTIPSNLGATALHHSAGIGNI---ELLTYLLSKGAEV--------DSES-  153 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~~~---~~~~~Ll~~~~~~--------~~~~-  153 (458)
                      .|.|||+.|+..++.+++.++...+   ..++..+..+.++.+.+...+..   ..+..+.+.....        +..+ 
T Consensus       106 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (277)
T d2fo1e1         106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY  185 (277)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred             cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999997654   45667788899999999887753   3444454443221        1222 


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcC
Q 012683          154 DAGTPLIWAAGHGQQEAVKVLL-EHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIG  231 (458)
Q Consensus       154 ~~~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~  231 (458)
                      .+.|+||+++..++.+++++++ ..+.+.+..+..|+||||+|+..|+.+++++|+++|++++.. ..|+||||+|+..|
T Consensus       186 ~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             CCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence            3349999999999999998754 678888889999999999999999999999999999999987 78999999999999


Q ss_pred             cHHHHHHHHH
Q 012683          232 STEIIKCLLK  241 (458)
Q Consensus       232 ~~~iv~~Ll~  241 (458)
                      +.++|++|++
T Consensus       266 ~~~iv~lL~~  275 (277)
T d2fo1e1         266 HHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHHH
Confidence            9999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=4.1e-28  Score=209.94  Aligned_cols=204  Identities=28%  Similarity=0.399  Sum_probs=182.3

Q ss_pred             hHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 012683           27 LDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETA  106 (458)
Q Consensus        27 ~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  106 (458)
                      .++|+.|++...+        +....|.+|.||||+||..|+.+++++|++. |.+++..+..+.++++.++..++....
T Consensus         2 ~~~v~~Ll~~g~d--------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~   72 (209)
T d1ot8a_           2 AQVISDLLAQGAE--------LNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVF   72 (209)
T ss_dssp             HHHHHHHHHHHHH--------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCC--------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-ccccccccccccccccccccccccccc
Confidence            4789999998433        2233688999999999999999999999997 999999999999999999999998887


Q ss_pred             HHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCC
Q 012683          107 KYLFEHGAN-PTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE  184 (458)
Q Consensus       107 ~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  184 (458)
                      ......... .......|.++.+.+.........+.|...+++++..+..+ |||+.++..+..++++.+++.+.+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  152 (209)
T d1ot8a_          73 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ  152 (209)
T ss_dssp             HHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccc
Confidence            777665433 34445678899999999999999999999999988776555 9999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHH
Q 012683          185 TEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCL  239 (458)
Q Consensus       185 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~L  239 (458)
                      |..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|++.|+.++|++|
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999987 7799999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=5.4e-31  Score=245.62  Aligned_cols=228  Identities=17%  Similarity=0.148  Sum_probs=173.2

Q ss_pred             hhhhcccCCCcHHHHHHHcCCHHHHHH---HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CC
Q 012683           48 VADIKDANKRGALHFAAREGKTDVCKY---LLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPS--NL  122 (458)
Q Consensus        48 ~~~~~~~~g~t~L~~A~~~g~~~~v~~---ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~  122 (458)
                      ....++..|.||||+||.+|+.+++++   |++. |++++.++.+|+||||+|+.+||.++|++|+++|++++..+  ..
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            345678899999999999999887765   5665 99999999999999999999999999999999999987764  46


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCC---CCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCC-------CCCCCcH
Q 012683          123 GATALHHSAGIGNIELLTYLLSKGAEVDS---ESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAE-------TEDNITP  191 (458)
Q Consensus       123 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~---~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-------~~~~~t~  191 (458)
                      |.||||+|+..|+.+++++|++.|++...   ...++ ||++.|+.+|+.+++++|++.|++++..       ...+.++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  240 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  240 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence            89999999999999999999999876532   22233 6778888999999999999988765322       2223355


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCc--ccc--------CCCCcHHHHHHhcCcHHHHHHHHHcCCC-----CCCCCCCCCcH
Q 012683          192 LLSAVAAGSLTCLDLLIQAGANA--NIV--------AGGATPLHIAADIGSTEIIKCLLKAGAD-----PNVTDEDGQKP  256 (458)
Q Consensus       192 l~~a~~~~~~~~~~~Ll~~g~~~--~~~--------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~-----~~~~~~~g~t~  256 (458)
                      ++.+...+..+....+.....+.  +..        ..+.++++.|+..|+.+++++|++.+..     .+..+.+|+||
T Consensus       241 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~  320 (346)
T d2ajaa1         241 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  320 (346)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcH
Confidence            55555444444433333222221  111        0135789999999999999999987653     44556689999


Q ss_pred             HHHHHHcCCHHHHHhhcCCC
Q 012683          257 IQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       257 l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      ||+|++.||.++|++|++.+
T Consensus       321 LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         321 LRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHHHHTCTTHHHHHTTSH
T ss_pred             HHHHHHcCcHHHHHHHhCCC
Confidence            99999999999999999753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=220.60  Aligned_cols=193  Identities=22%  Similarity=0.239  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcH
Q 012683           14 RVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETP   93 (458)
Q Consensus        14 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~   93 (458)
                      +.++||.||..|+.+++.+|++.+...+..+     +.+|.+|.||||+|+..|+.+++++|++. |++++..|..|.||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-----n~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~   75 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-----NFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCC-----CCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-----ccCCCCCCccccccccccccccccccccc-cccccccccccccc
Confidence            3468999999999988888877665544443     67899999999999999999999999997 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--CCcHHHHHHhC
Q 012683           94 LLHAARQGHTETAKYLFEHGANPTI------PSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESD--AGTPLIWAAGH  165 (458)
Q Consensus        94 L~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--~~t~l~~A~~~  165 (458)
                      |+.++..|+.++++.|++.+.....      ....|.||||.|+..++.+++++|+..|..++..+.  +.||||+|+..
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             cccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc
Confidence            9999999999999999998766432      234466777777766666666666666665543332  23566666666


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 012683          166 GQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGA  212 (458)
Q Consensus       166 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~  212 (458)
                      |+.+++++|+++|+|++.++..|+||||+|+..++.+++++|++.+.
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            66666666666666665555555555555555555555555555543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.8e-27  Score=194.64  Aligned_cols=152  Identities=30%  Similarity=0.387  Sum_probs=95.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  137 (458)
                      ++||+||..|++++|++|+++ |++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            667777777777777777775 7777777777777777664 56777777777777777776666777777666666666


Q ss_pred             HHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012683          138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHA-NPNAETEDNITPLLSAVAAGSLTCLDLLIQAG  211 (458)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g  211 (458)
                      +++.|++.+.+++..+..+ +|+++|+..++.+++++|++++. +.+.++.+|.||||+|+..|+.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            6666666665555443333 55555555555555555555543 44455555555555555555555555555544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=194.35  Aligned_cols=152  Identities=29%  Similarity=0.413  Sum_probs=90.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEA  170 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~  170 (458)
                      +|||+|+..|+.++|++|+++|++++..|..|.||||+|+ .|+.+++++|++.|++++..+..+ ++++.++..+..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6777777777777777777777777777777777777654 456666666666665554433332 45555555555555


Q ss_pred             HHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCcHHHHHHhcCcHHHHHHHHHcCC-CCCCC
Q 012683          171 VKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIVAGGATPLHIAADIGSTEIIKCLLKAGA-DPNVT  249 (458)
Q Consensus       171 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~-~~~~~  249 (458)
                      ++.|++.+.+++..+..                                |.+|||+|+..++.+++++|+++|. +++.+
T Consensus        82 ~~~l~~~~~~~~~~~~~--------------------------------~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  129 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNE--------------------------------GNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  129 (156)
T ss_dssp             HHHHHHTTCCTTCCCTT--------------------------------SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             ccccccccccccccccc--------------------------------ccccccccccccccccccccccccccccccc
Confidence            55555444444444444                                5555555555555555555555543 45555


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHhhcCCC
Q 012683          250 DEDGQKPIQVAAARGNREAVEILFPLT  276 (458)
Q Consensus       250 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~  276 (458)
                      |..|+||||+|+..++.+++++|+++|
T Consensus       130 d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         130 NHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666666666666666666665543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-26  Score=187.70  Aligned_cols=151  Identities=26%  Similarity=0.377  Sum_probs=115.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  137 (458)
                      +.|+.||..|++++|+.|++..+.+++..|..|.||||+|+. |+.+++++|++++.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            458888888888888888887688888888888888888764 7788888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012683          138 LLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQA  210 (458)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  210 (458)
                      +++++++.|++++..+..+ ||||+|+..|+.+++++|+ .|++++.++.+|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888888777776655443 7777777777777776665 4566666666666666666666666666666653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.6e-26  Score=186.57  Aligned_cols=148  Identities=30%  Similarity=0.447  Sum_probs=98.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV  171 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~  171 (458)
                      ||||.|+..|+.++|++||++|++++ .+..|.||||+|+..++.++++.++...                         
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~-------------------------   57 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG-------------------------   57 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT-------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccc-------------------------
Confidence            66666666666666666666666554 4556666666666665555555555544                         


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCC
Q 012683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (458)
Q Consensus       172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  250 (458)
                             ......+..+.++++.++...+.+++++++..|++.+.. .+|.||||+|+..|+.++|++|+++|++++.+|
T Consensus        58 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d  130 (153)
T d1awcb_          58 -------VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             -------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             -------ccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccC
Confidence                   333334444455555555555666666666666655555 557777777788888888888888888888888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhh
Q 012683          251 EDGQKPIQVAAARGNREAVEIL  272 (458)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~L  272 (458)
                      ..|.||||+|+.+|+.+++++|
T Consensus       131 ~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         131 KFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHhC
Confidence            8888888888888888888776

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.8e-26  Score=187.64  Aligned_cols=149  Identities=30%  Similarity=0.481  Sum_probs=104.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCcHHHHHHhCCCHHHH
Q 012683           93 PLLHAARQGHTETAKYLFEH-GANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAGTPLIWAAGHGQQEAV  171 (458)
Q Consensus        93 ~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~t~l~~A~~~~~~~~~  171 (458)
                      .|+.|+..|+.++|+.|++. +++++..|..|.||||+|+ .|+.+++++|+                            
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll----------------------------   55 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL----------------------------   55 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHH----------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccc----------------------------
Confidence            46666666666666666653 4566666666666666554 24445555444                            


Q ss_pred             HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCC
Q 012683          172 KVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTD  250 (458)
Q Consensus       172 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  250 (458)
                          +++.+++..+..|.+|++.++..++.+++++++++|++++.. ..|.||||+|+..|+.+++++|+ .|++++.+|
T Consensus        56 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d  130 (156)
T d1bd8a_          56 ----KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD  130 (156)
T ss_dssp             ----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCC
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccC
Confidence                445555555556667777777777777777777777776666 55788888888888888888776 578888888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHhhcCC
Q 012683          251 EDGQKPIQVAAARGNREAVEILFPL  275 (458)
Q Consensus       251 ~~g~t~l~~A~~~~~~~~v~~Ll~~  275 (458)
                      ..|+||||+|+..|+.+++++|++|
T Consensus       131 ~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888888888888888888888865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.9e-26  Score=185.16  Aligned_cols=150  Identities=27%  Similarity=0.387  Sum_probs=117.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 012683           56 KRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGN  135 (458)
Q Consensus        56 g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  135 (458)
                      ..||||.||+.|+.++|++||++ |++++ .+..|+||||+|+..++.+++..++.........+..+.++++.++...+
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            35999999999999999999998 88877 68999999999999999999999999888877777778888888888877


Q ss_pred             HHHHHHHHhCCCCCCCCCCCC-cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 012683          136 IELLTYLLSKGAEVDSESDAG-TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLL  207 (458)
Q Consensus       136 ~~~~~~Ll~~~~~~~~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  207 (458)
                      .+++++++..+.+.+..+..+ ||||+|+..|+.+++++|++.|++++..|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            777777777776665554433 666666666666666666666666666666666666666666666666544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=1.6e-27  Score=221.96  Aligned_cols=223  Identities=17%  Similarity=0.125  Sum_probs=162.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC--CCC
Q 012683           13 ERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAAREGKTDVCKYLLEELKLDVDTQD--EDG   90 (458)
Q Consensus        13 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~--~~g   90 (458)
                      .+.++|+.|+..|+.+.++.+. .+...++.     .+..|.+|.||||+||..|+.++|++|++. |.+++..+  .+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~-~L~~~~~~-----in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g  161 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLC-LLLTSDEI-----VKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN  161 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHT-TC--CCSS-----CC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHH-HHHhCCCc-----ccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCC
Confidence            4678999999999998887642 12222333     466788999999999999999999999997 88887765  468


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-----CC--CCC-cHH
Q 012683           91 ETPLLHAARQGHTETAKYLFEHGANPT---IPSNLGATALHHSAGIGNIELLTYLLSKGAEVDS-----ES--DAG-TPL  159 (458)
Q Consensus        91 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-----~~--~~~-t~l  159 (458)
                      +||||+|+.+||.++|++|++.|++..   ..+..+.||++.|+..|+.+++++|++.|++++.     ..  ... +++
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  241 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF  241 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHH
Confidence            999999999999999999999987653   3345567888999999999999999998865431     11  111 455


Q ss_pred             HHHHhCCCHHHHHHHHhcCCC--CCCCCC-------CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc------CCCCcHH
Q 012683          160 IWAAGHGQQEAVKVLLEHHAN--PNAETE-------DNITPLLSAVAAGSLTCLDLLIQAGANANIV------AGGATPL  224 (458)
Q Consensus       160 ~~A~~~~~~~~~~~Ll~~~~~--~~~~~~-------~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~------~~g~t~L  224 (458)
                      +.+...+..++...+.....+  .+..+.       .+.++++.++..+..+++++|++.+......      .+|+|||
T Consensus       242 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~L  321 (346)
T d2ajaa1         242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL  321 (346)
T ss_dssp             HHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHH
T ss_pred             HHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHH
Confidence            555444444443333322221  111111       1246788888899999999999887643322      4589999


Q ss_pred             HHHHhcCcHHHHHHHHHc
Q 012683          225 HIAADIGSTEIIKCLLKA  242 (458)
Q Consensus       225 ~~A~~~~~~~iv~~Ll~~  242 (458)
                      |+||+.|+.++|++|++.
T Consensus       322 hlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         322 RLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHcCcHHHHHHHhCC
Confidence            999999999999999864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-25  Score=175.00  Aligned_cols=118  Identities=33%  Similarity=0.427  Sum_probs=109.3

Q ss_pred             CcHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CC-CCcHHHHHHhcCcH
Q 012683          156 GTPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AG-GATPLHIAADIGST  233 (458)
Q Consensus       156 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~-g~t~L~~A~~~~~~  233 (458)
                      .++||+|+..|+.+++++|+++|++++..+.+|.||+|.|+ .|+.+++++|+++|++++.. .. +.||||+|++.|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            47899999999999999999999999999999999999764 79999999999999999887 33 45799999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcC
Q 012683          234 EIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFP  274 (458)
Q Consensus       234 ~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  274 (458)
                      ++|++|+++|++++.+|..|+||||+|+.+|+.+++++|+.
T Consensus        83 ~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.8e-25  Score=171.21  Aligned_cols=113  Identities=29%  Similarity=0.441  Sum_probs=105.4

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i  235 (458)
                      |||++|+..|+.+++++|+++|++++..+.+|+||||+|+..|+.+++++|++.|++++.. ..|.||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            7999999999999999999999999999999999999999999999999999999999987 789999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhc
Q 012683          236 IKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILF  273 (458)
Q Consensus       236 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  273 (458)
                      |++|+++|++++.+|..|+||||+|.    .+.++.|+
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             hhhhhcccccceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            99999999999999999999999883    24455554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.2e-24  Score=195.84  Aligned_cols=178  Identities=26%  Similarity=0.341  Sum_probs=118.7

Q ss_pred             CCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-------HHHHHHHhCCCCCCC
Q 012683           80 KLDVDTQ-DEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI-------ELLTYLLSKGAEVDS  151 (458)
Q Consensus        80 ~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~~~~Ll~~~~~~~~  151 (458)
                      +.++|.. |..|+||||+|+..|+.++|++|+++|++++.+|..|.||||.|+..++.       ++++++.......  
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~--  173 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE--  173 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE--
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc--
Confidence            5677755 88899999999999999999999999999999999999999999986642       4455554332221  


Q ss_pred             CCCCCcHHHHHHhCCC----HH--------HHHHHHhcCCCC-CCCCCCCCcHHHHHHHcCCHHHH-----HHHHHcCCC
Q 012683          152 ESDAGTPLIWAAGHGQ----QE--------AVKVLLEHHANP-NAETEDNITPLLSAVAAGSLTCL-----DLLIQAGAN  213 (458)
Q Consensus       152 ~~~~~t~l~~A~~~~~----~~--------~~~~Ll~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~-----~~Ll~~g~~  213 (458)
                      ...+.||||+++..+.    ..        ++.++...+... ......+.++++.+........+     ..++...  
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  251 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM--  251 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT--
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC--
Confidence            2234499998876443    22        334444544332 22333444555554444333322     2233333  


Q ss_pred             cccc-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 012683          214 ANIV-AGGATPLHIAADIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAA  261 (458)
Q Consensus       214 ~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~  261 (458)
                      +|.. .+|+||||+|++.|+.++|++|+++|++++.+|..|+||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            4444 67999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.6e-24  Score=165.92  Aligned_cols=116  Identities=27%  Similarity=0.308  Sum_probs=54.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--cHHHHHHhCCCHH
Q 012683           92 TPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAEVDSESDAG--TPLIWAAGHGQQE  169 (458)
Q Consensus        92 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~--t~l~~A~~~~~~~  169 (458)
                      ++||+|+..|+.++|++|+++|++++..+..|.||||.|+ .|+.+++++|+++|++++..+..+  ||||+|+..|+.+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            4444444444444444444444444444444444444332 344444444444444443332221  3444444444455


Q ss_pred             HHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 012683          170 AVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLI  208 (458)
Q Consensus       170 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  208 (458)
                      ++++|+++|++++..|..|+||||+|+..|+.+++++|+
T Consensus        84 ~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          84 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555555555555555555555555555555555554443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=164.73  Aligned_cols=119  Identities=26%  Similarity=0.385  Sum_probs=107.3

Q ss_pred             cHHHHHHhCCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHHhcCcHHH
Q 012683          157 TPLIWAAGHGQQEAVKVLLEHHANPNAETEDNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAADIGSTEI  235 (458)
Q Consensus       157 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~i  235 (458)
                      ++|+.|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++.|++++.. .+|.||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            5688899999999999999999999999999999999999999999999999999999887 789999999999999999


Q ss_pred             HHHHHHcCCCCCCCCC-CCCcHHHHH--HHcCCHHHHHhhcCC
Q 012683          236 IKCLLKAGADPNVTDE-DGQKPIQVA--AARGNREAVEILFPL  275 (458)
Q Consensus       236 v~~Ll~~g~~~~~~~~-~g~t~l~~A--~~~~~~~~v~~Ll~~  275 (458)
                      |++|+++|++++..+. .|+||++++  ...|+.+++++|++.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999997765 588887765  567889999999853

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-23  Score=162.52  Aligned_cols=119  Identities=26%  Similarity=0.324  Sum_probs=103.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 012683           58 GALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIE  137 (458)
Q Consensus        58 t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  137 (458)
                      ++|+.||..|++++|++|+++ |++++.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            689999999999999999987 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCC--CCcHHHH--HHhCCCHHHHHHHHhc
Q 012683          138 LLTYLLSKGAEVDSESD--AGTPLIW--AAGHGQQEAVKVLLEH  177 (458)
Q Consensus       138 ~~~~Ll~~~~~~~~~~~--~~t~l~~--A~~~~~~~~~~~Ll~~  177 (458)
                      ++++|+++|++++..+.  +.|++++  +...|+.+++++|+..
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999998875542  3366554  4566778888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1e-23  Score=163.60  Aligned_cols=105  Identities=29%  Similarity=0.367  Sum_probs=86.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 012683           57 RGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNI  136 (458)
Q Consensus        57 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  136 (458)
                      .|||++|+..|+.++|++|+++ |++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            4788888888888888888886 888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCCCCCCCCCCC-cHHHHH
Q 012683          137 ELLTYLLSKGAEVDSESDAG-TPLIWA  162 (458)
Q Consensus       137 ~~~~~Ll~~~~~~~~~~~~~-t~l~~A  162 (458)
                      +++++|+++|++++..+..+ ||||+|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            88888888887777665544 777766

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.8e-22  Score=160.10  Aligned_cols=133  Identities=19%  Similarity=0.175  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhhhcCCCchhhhhhhcccCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCC
Q 012683           12 RERVQQFLNAACTGNLDLLKKIAKQLDDQGKGLSKTVADIKDANKRGALHFAARE---GKTDVCKYLLEELKLDVDTQDE   88 (458)
Q Consensus        12 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~   88 (458)
                      ...+..|+.|++.+|+..+.+++....+...   +......+..|.||||+|+..   |+.+++++|++. |++++.+|.
T Consensus         4 ~~~l~~L~~Av~~~dl~~l~~~~~~g~d~~~---~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~   79 (154)
T d1dcqa1           4 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTE---KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTG   79 (154)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTS---BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCT
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHcCCCcCC---CCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhh
Confidence            3456789999999999999998876322111   222334467899999999975   678999999998 999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 012683           89 DGETPLLHAARQGHTETAKYLFEHGANPTIPSNLGATALHHSAGIGNIELLTYLLSKGAE  148 (458)
Q Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  148 (458)
                      .|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+..
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999987643

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.1e-21  Score=158.94  Aligned_cols=121  Identities=24%  Similarity=0.279  Sum_probs=102.6

Q ss_pred             HHHHHhCCCHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683          159 LIWAAGHGQQEAVKVLLEHHANPNAE------TEDNITPLLSAVAA---GSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (458)
Q Consensus       159 l~~A~~~~~~~~~~~Ll~~~~~~~~~------~~~~~t~l~~a~~~---~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (458)
                      |..|+..++...+..++..|.+++..      +..|+||||+|+..   ++.+++++|+++|++++.. ..|.||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            45566777777777777777665443      66789999999975   6789999999999999888 67999999999


Q ss_pred             hcCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHhhcCCCCCC
Q 012683          229 DIGSTEIIKCLLKAGADPNVTDEDGQKPIQVAAARGNREAVEILFPLTSED  279 (458)
Q Consensus       229 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  279 (458)
                      ..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++.+...
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999999866543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=151.33  Aligned_cols=115  Identities=30%  Similarity=0.525  Sum_probs=111.4

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      +++.++++|+.+++.|+|++|+..|+++|+.+|+++.+|+++|.++.++|++++|+.+|.++++++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          413 RLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      ..+|++++|+.+|+++++++|+++.++..++.+..
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999888753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.3e-22  Score=185.02  Aligned_cols=170  Identities=20%  Similarity=0.274  Sum_probs=121.2

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-------HHHHHHHHHcCCCCCCCCCCCCc
Q 012683           53 DANKRGALHFAAREGKTDVCKYLLEELKLDVDTQDEDGETPLLHAARQGH-------TETAKYLFEHGANPTIPSNLGAT  125 (458)
Q Consensus        53 ~~~g~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~~~~~~~~~~~g~t  125 (458)
                      |.+|+||||+||..|+.++|++|+++ |++++.+|..|+||||.||..++       .++++++..   .+...|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCC
Confidence            78999999999999999999999998 99999999999999999998765       244555533   35566788999


Q ss_pred             HHHHHHHcCC----HH--------HHHHHHhCCCCCCCC--CCCCcHHHHHHhCCCHHHH-----HHHHhcCCCCCCCCC
Q 012683          126 ALHHSAGIGN----IE--------LLTYLLSKGAEVDSE--SDAGTPLIWAAGHGQQEAV-----KVLLEHHANPNAETE  186 (458)
Q Consensus       126 ~L~~A~~~~~----~~--------~~~~Ll~~~~~~~~~--~~~~t~l~~A~~~~~~~~~-----~~Ll~~~~~~~~~~~  186 (458)
                      |||.++..+.    ..        ++.+++..+......  ....++++.+.........     ..++..  .+|.+|.
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~in~~D~  257 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN--MLNAQDS  257 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH--TTTCCCT
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc--CccCCCC
Confidence            9998886543    22        334555554433211  1122344433333222222     223332  2678899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCcHHHHHH
Q 012683          187 DNITPLLSAVAAGSLTCLDLLIQAGANANIV-AGGATPLHIAA  228 (458)
Q Consensus       187 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~g~t~L~~A~  228 (458)
                      +|+||||+|+..|+.++|++|++.|++++.. ..|.|||++|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999999999999999998 78999999985

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-20  Score=153.08  Aligned_cols=123  Identities=32%  Similarity=0.458  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYR  407 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  407 (458)
                      +...++++.+..+|+.+|+.|+|++|+..|+++++++|+++.+|+++|.|+..+|++++|+.+|+++++++|+++.+|++
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          408 EGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       408 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +|.++..+|++++|+.+|+++++++|+++.++..+..+...++
T Consensus        84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          84 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888865543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.83  E-value=1.2e-19  Score=147.39  Aligned_cols=128  Identities=22%  Similarity=0.309  Sum_probs=117.9

Q ss_pred             CchHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----------------hHHHhHHHHHHhhCCHHHHHH
Q 012683          326 VRPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----------------TLLSNRSLCWIRLGQAEHALA  389 (458)
Q Consensus       326 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~  389 (458)
                      ..++....+..+.+.|+.+|+.|+|.+|+..|++|++..|...                .++.|+|.||.++|++++|+.
T Consensus         9 ~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~   88 (153)
T d2fbna1           9 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID   88 (153)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhh
Confidence            3456678888999999999999999999999999998766432                478899999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          390 DAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       390 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      +|++|+.++|+++++|+++|.++..+|++++|+.+|+++++++|+++++...+..+..++++..
T Consensus        89 ~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          89 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999998887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-19  Score=149.45  Aligned_cols=128  Identities=20%  Similarity=0.258  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch---------------hHHHhHHHHHHhhCCHHHHHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA---------------TLLSNRSLCWIRLGQAEHALADAK  392 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~  392 (458)
                      ++..+.+..+.+.|+.+|+.|+|++|+..|+++++..|...               .+|.++|.||.++|+|++|+.+++
T Consensus         7 ~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~   86 (170)
T d1p5qa1           7 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN   86 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhh
Confidence            45667789999999999999999999999999999877542               578899999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          393 ACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       393 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +|+.++|+++.+|+++|.++..+|+|++|+.+|+++++++|+++.+...++.+..++++....
T Consensus        87 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          87 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887765543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.80  E-value=3.5e-19  Score=147.15  Aligned_cols=128  Identities=22%  Similarity=0.351  Sum_probs=117.2

Q ss_pred             chHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc---------------hhHHHhHHHHHHhhCCHHHHHHHH
Q 012683          327 RPEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD---------------ATLLSNRSLCWIRLGQAEHALADA  391 (458)
Q Consensus       327 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~  391 (458)
                      ..+....++.+.+.|+.+|+.|+|.+|+..|++|+...|..               ..+|.|+|.||.++|++++|+.++
T Consensus         8 ~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1           8 TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            35667889999999999999999999999999999865432               357889999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       392 ~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +++++++|+++.+|+++|.++..+|+|++|+.+|.+++.++|+++.+...++.+...++...+
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999999999999999999888776544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=7.6e-19  Score=145.37  Aligned_cols=130  Identities=19%  Similarity=0.347  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhcc----------------CCCchhHHHhHHHHHHhhCCHHHHHHHH
Q 012683          328 PEIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDF----------------DPSDATLLSNRSLCWIRLGQAEHALADA  391 (458)
Q Consensus       328 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~  391 (458)
                      +.....++.+...|+.++..|+|.+|+..|++++.+                .|....++.++|.|+.++|+|++|+.+|
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  100 (169)
T d1ihga1          21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence            445566888999999999999999999999999864                4556778999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCCC
Q 012683          392 KACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTDK  457 (458)
Q Consensus       392 ~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~~  457 (458)
                      ++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+...+..+...++...+.++
T Consensus       101 ~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k  166 (169)
T d1ihga1         101 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  166 (169)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988887766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.2e-19  Score=153.27  Aligned_cols=103  Identities=31%  Similarity=0.467  Sum_probs=99.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      ++.+.+.|+.+|+.|+|++|+..|++|++++|.++.+|+++|.||.++|++++|+.+|++|++++|+++.+|+++|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            57799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcH
Q 012683          414 LLEKFDEAANAFYEGVTLDPENK  436 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~  436 (458)
                      .+|+|++|+.+|++++.++|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999887543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-17  Score=131.01  Aligned_cols=118  Identities=20%  Similarity=0.327  Sum_probs=105.5

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCCh-------HH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWP-------KA  404 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~  404 (458)
                      ++|.++++.|+.+|..|+|++|+.+|+++++++|+++.+++++|.||.++|+|++|+.+|++|++++|.++       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            56888999999999999999999999999999999999999999999999999999999999999999875       46


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          405 CYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       405 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      |+++|.++..++++++|+++|.+++..+|+ ++....+..+.+.++
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            777888888888999999999999998875 666666666655544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=128.13  Aligned_cols=113  Identities=12%  Similarity=0.054  Sum_probs=103.9

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLG---QAEHALADAKACRALRPDW--PKACYREGAALR  413 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~--~~~~~~~a~~~~  413 (458)
                      +.++.++..+++++|.+.|++++.++|.++.+++++|.|+++.+   ++.+|+..|+++++.+|.+  ..+++++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            46678889999999999999999999999999999999998744   5667999999999999866  458999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      .+|+|++|+++|+++++++|++.++...+..+..++++
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999888765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.8e-16  Score=140.38  Aligned_cols=121  Identities=16%  Similarity=0.104  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+..+|..+++.|+|++|++.|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  113 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  113 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ++..+|++++|++.|+++++.+|++......+..+....+.
T Consensus       114 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         114 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999888777776665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.1e-16  Score=131.96  Aligned_cols=120  Identities=17%  Similarity=0.148  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ++-.++++|..++..|+|++|++.|.++   .|.++.+|+++|.+|..+|++++|+++|++|++++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            4567889999999999999999999874   5667899999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHHHHHHhhccCCCc----------------HHHHHHHHHHHHHhhhhhcC
Q 012683          413 RLLEKFDEAANAFYEGVTLDPEN----------------KELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       413 ~~~~~~~~A~~~~~~a~~~~p~~----------------~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..+|+|++|++.|++|+...|.+                .+++++++.++..++++.++
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A  139 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  139 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999765533                47788999999988877654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.67  E-value=3.9e-16  Score=118.96  Aligned_cols=94  Identities=12%  Similarity=0.031  Sum_probs=91.1

Q ss_pred             HHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 012683          336 EAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLL  415 (458)
Q Consensus       336 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~  415 (458)
                      ..+..|..+++.|++++|+..|+++++.+|+++.+|+++|.++.++|++++|+.+|+++++++|+++.+++.+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhh
Q 012683          416 EKFDEAANAFYEGV  429 (458)
Q Consensus       416 ~~~~~A~~~~~~a~  429 (458)
                      |++++|++.|+++|
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=2e-16  Score=126.53  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=102.9

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhh----------CCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRL----------GQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      +..+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   83 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence            44566778899999999999999999999999999999864          55689999999999999999999999999


Q ss_pred             HHHHhhh-----------HHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          411 ALRLLEK-----------FDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       411 ~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      +|..+|+           |++|+++|++++.++|++..++..++.+.+..+...+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9998864           7999999999999999999999999999887765544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-15  Score=136.54  Aligned_cols=126  Identities=10%  Similarity=-0.007  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-HHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-AEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ....++++...|..+.+.+.+++|++.|++||+++|++..+|++||.++..+|+ +++|+.+++++++++|++..+|+++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            345677788888888888999999999999999999999999999999888875 8999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      |.++..+|++++|++.|.++++++|++..++.+++.++..++++.++
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A  165 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE  165 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999888876653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.4e-14  Score=135.11  Aligned_cols=118  Identities=16%  Similarity=0.170  Sum_probs=113.6

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..+...|++.+|++.|++++...|.+..++..+|.++.+.|++++|+..|+++++++|+++.+++.+|.++.
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  350 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRK  451 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  451 (458)
                      ..|++++|++.|+++++++|+++.++.+++.++.++|+
T Consensus       351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999998764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=132.51  Aligned_cols=121  Identities=10%  Similarity=-0.018  Sum_probs=112.0

Q ss_pred             HHHHHHHHhhhHHHhhc-cHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQK-DYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ....++..+|..+...+ ++++|+..|+++++++|++..+|+++|.++.++|++++|+..+.++++++|++..+|+++|.
T Consensus        75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~  154 (315)
T d2h6fa1          75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW  154 (315)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence            33677899999988876 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          411 ALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       411 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      ++..+|++++|+++|+++++++|.+..++.+++.++..+++.
T Consensus       155 ~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            999999999999999999999999999999999988776653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.4e-14  Score=118.54  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=95.4

Q ss_pred             HHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------------
Q 012683          335 AEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------------  401 (458)
Q Consensus       335 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------------  401 (458)
                      ..+++.|.+++..|+|++|++.|++|++++|+++.+|+++|.++.++|++++|+.+|++|+...|.+             
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~  116 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  116 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcc
Confidence            4588999999999999999999999999999999999999999999999999999999999876543             


Q ss_pred             ---hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHH
Q 012683          402 ---PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       402 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  437 (458)
                         .++++++|.++..+|++++|++.|.+++.+.|+...
T Consensus       117 ~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         117 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence               478899999999999999999999999999887533

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.4e-14  Score=129.88  Aligned_cols=120  Identities=21%  Similarity=0.218  Sum_probs=107.7

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..+...|++++|+..|++++...|+++.+|+++|.++..+|++++|++.|+++++++|+++.+|+.+|.++.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  251 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHH-----------HHHHHHHHHHhhhhh
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKEL-----------VFAFREAVEAGRKFH  453 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~-----------~~~l~~~~~~~~~~~  453 (458)
                      ..|++++|++.|++|++++|++...           +..++.++..+++.+
T Consensus       252 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999887664           455677777666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.51  E-value=2.3e-14  Score=116.19  Aligned_cols=104  Identities=20%  Similarity=0.145  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCC
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------------ATLLSNRSLCWIRLGQAEHALADAKACRALRP  399 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  399 (458)
                      .++..++..|..++..|+|++|+..|++++++.|..            ..+|.++|.+|.++|+|++|+.++++++++.|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            345556667999999999999999999999988764            35799999999999999999999999998754


Q ss_pred             C-----------ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCc
Q 012683          400 D-----------WPKACYREGAALRLLEKFDEAANAFYEGVTLDPEN  435 (458)
Q Consensus       400 ~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~  435 (458)
                      .           +..+|+++|.+|..+|++++|+.+|++++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            2           35689999999999999999999999999986533

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-13  Score=127.03  Aligned_cols=122  Identities=16%  Similarity=0.132  Sum_probs=116.8

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+...|..++..|++++|+..|+++++++|+++.+++++|.++...|++.+|++.+++++...|.++..++.+|.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            45577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          414 LLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       414 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      ..|++++|++.|+++++++|+++.++..++.++..+|+++++
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  358 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999887654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1e-13  Score=122.26  Aligned_cols=110  Identities=24%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             hhccHHHHHHHHHHhhccC----CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHH
Q 012683          346 KQKDYLMAVDAYTQAIDFD----PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEA  421 (458)
Q Consensus       346 ~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A  421 (458)
                      ...+++.|+..+++++...    |..+.+|+++|.+|...|++++|+..|++|++++|+++.+|+++|.++..+|++++|
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            3456677888888888753    345679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          422 ANAFYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       422 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +..|+++++++|+++.++..++.++..++++.++
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  124 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA  124 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999999887653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.3e-13  Score=98.86  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc-------hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD-------ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACY  406 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  406 (458)
                      ++++++.|..+++.|+|.+|+..|++|+++.|.+       ..++.++|.++.++|++++|+..|++|++++|+++.+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4667888888888888888888888888775443       467778888888888888888888888888888888888


Q ss_pred             HHHHHHHHhh
Q 012683          407 REGAALRLLE  416 (458)
Q Consensus       407 ~~a~~~~~~~  416 (458)
                      +++.....++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            7777665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=7.3e-13  Score=100.37  Aligned_cols=87  Identities=17%  Similarity=0.097  Sum_probs=83.7

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ..++++|.++.+.|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++|++..++..++.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcC
Q 012683          449 GRKFHGT  455 (458)
Q Consensus       449 ~~~~~~~  455 (458)
                      +|+..++
T Consensus        97 ~g~~~~A  103 (112)
T d1hxia_          97 EHNANAA  103 (112)
T ss_dssp             HHHHHHH
T ss_pred             CCCHHHH
Confidence            9988765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-12  Score=119.34  Aligned_cols=101  Identities=16%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLE  416 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  416 (458)
                      .+++|..+++.|+|++|+..|+++++.+|+++.+|+++|.++...|++++|+..|.++++++|+++.+++.+|.++...|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccCCCcHH
Q 012683          417 KFDEAANAFYEGVTLDPENKE  437 (458)
Q Consensus       417 ~~~~A~~~~~~a~~~~p~~~~  437 (458)
                      ++++|++.|++++..+|+...
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGG
T ss_pred             cccccccchhhHHHhccchHH
Confidence            999999999999999887543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=99.93  Aligned_cols=85  Identities=18%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             HHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhh
Q 012683          371 LSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGR  450 (458)
Q Consensus       371 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  450 (458)
                      +...|..+++.|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|.++++++|+++.++..++.++..++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcC
Q 012683          451 KFHGT  455 (458)
Q Consensus       451 ~~~~~  455 (458)
                      +++++
T Consensus        86 ~~~~A   90 (117)
T d1elwa_          86 RFEEA   90 (117)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.6e-12  Score=109.68  Aligned_cols=89  Identities=10%  Similarity=-0.007  Sum_probs=84.5

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAV  446 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  446 (458)
                      +...+...|..+++.|+|++|+..|++|+.++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++..++..++.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcC
Q 012683          447 EAGRKFHGT  455 (458)
Q Consensus       447 ~~~~~~~~~  455 (458)
                      ..+++++++
T Consensus        83 ~~l~~~~~A   91 (201)
T d2c2la1          83 LEMESYDEA   91 (201)
T ss_dssp             HHTTCHHHH
T ss_pred             HHCCCHHHH
Confidence            999987764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=94.83  Aligned_cols=83  Identities=11%  Similarity=-0.161  Sum_probs=76.1

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHH
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDW-------PKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVF  440 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~  440 (458)
                      ++-.|.+|.++.+.|+|.+|+..|++|+++.|.+       ..+|+++|.++.++|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4567899999999999999999999999986643       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 012683          441 AFREAVEAGR  450 (458)
Q Consensus       441 ~l~~~~~~~~  450 (458)
                      +++.+...+.
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999887765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=1.7e-11  Score=100.33  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGA  410 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  410 (458)
                      ...+..+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.++..+|++++|+.+|++|++++|++..++..++.
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHH
Q 012683          411 ALRLLEKFDEAAN  423 (458)
Q Consensus       411 ~~~~~~~~~~A~~  423 (458)
                      +...+..+.++.+
T Consensus       154 ~~~~l~~~~~~~k  166 (169)
T d1ihga1         154 VKQKIKAQKDKEK  166 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888877653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.7e-12  Score=101.66  Aligned_cols=87  Identities=15%  Similarity=0.050  Sum_probs=82.3

Q ss_pred             hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          369 TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       369 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ..+...|..+++.|+|++|+..|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcC
Q 012683          449 GRKFHGT  455 (458)
Q Consensus       449 ~~~~~~~  455 (458)
                      +|++.++
T Consensus        91 ~g~~~eA   97 (159)
T d1a17a_          91 LGKFRAA   97 (159)
T ss_dssp             TTCHHHH
T ss_pred             cCCHHHH
Confidence            9988764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=9e-11  Score=96.35  Aligned_cols=106  Identities=16%  Similarity=0.078  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch----------------------hHHHhHHHHHHhhCCHHH
Q 012683          329 EIKKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA----------------------TLLSNRSLCWIRLGQAEH  386 (458)
Q Consensus       329 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~~a~~~~~~~~~~~  386 (458)
                      .+..+.+++...|..++..|++++|+..|++|+++.+..+                      .++.+++.++..+|++++
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence            3457789999999999999999999999999999976542                      478899999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHh-------hccCCC
Q 012683          387 ALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEG-------VTLDPE  434 (458)
Q Consensus       387 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------~~~~p~  434 (458)
                      |+..++++++++|.+..+|..++.++...|++.+|++.|+++       +-++|.
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999999998       556776

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.9e-11  Score=96.20  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             HHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 012683          333 KAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAAL  412 (458)
Q Consensus       333 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  412 (458)
                      ....+.+.|.++++.|+|++|+..++++|+++|+++.+|+++|.|+..+|++++|+.+|++|++++|+++.+...++.++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHHHHHH
Q 012683          413 RLLEKFDEAAN  423 (458)
Q Consensus       413 ~~~~~~~~A~~  423 (458)
                      ..++++.+...
T Consensus       141 ~~~~~~~~~e~  151 (170)
T d1p5qa1         141 QRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.21  E-value=1.3e-10  Score=94.64  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+.+.|.++++.|+|++|+..|+++++++|.+..+|+++|.++..+|++++|+.+|.++++++|+++.++..++.+
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHH
Q 012683          412 LRLLEKFDEAA  422 (458)
Q Consensus       412 ~~~~~~~~~A~  422 (458)
                      ...++.+.+.-
T Consensus       142 ~~~~~~~~e~~  152 (168)
T d1kt1a1         142 QKKAKEHNERD  152 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHhHHHHH
Confidence            98888776543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-11  Score=95.48  Aligned_cols=85  Identities=12%  Similarity=0.003  Sum_probs=75.5

Q ss_pred             hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          368 ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      +..+-++|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|++++.++|++...+..++.++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34566899999999999999999999999999999999999999999999999999999999999988876666666666


Q ss_pred             Hhhhh
Q 012683          448 AGRKF  452 (458)
Q Consensus       448 ~~~~~  452 (458)
                      .++..
T Consensus        84 ~lg~~   88 (128)
T d1elra_          84 RIGNS   88 (128)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.19  E-value=1.1e-10  Score=93.56  Aligned_cols=85  Identities=16%  Similarity=0.137  Sum_probs=79.6

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR  413 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  413 (458)
                      +..+.++|..+++.|+|++|++.|+++++++|.+..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+..
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HhhhH
Q 012683          414 LLEKF  418 (458)
Q Consensus       414 ~~~~~  418 (458)
                      ++++.
T Consensus       147 kl~~~  151 (153)
T d2fbna1         147 KLKEA  151 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.9e-10  Score=105.00  Aligned_cols=125  Identities=9%  Similarity=-0.093  Sum_probs=113.7

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC--HHHHHHHHHHHHHhCCCChHHH-HHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ--AEHALADAKACRALRPDWPKAC-YRE  408 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~-~~~  408 (458)
                      .....+...+..+...+++.+|+..|+++++.+|.++.+|+++|.++...++  +++|+..+.++++++|.+..++ +..
T Consensus        71 ~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  150 (334)
T d1dcea1          71 EVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR  150 (334)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHH
Confidence            3345566777788889999999999999999999999999999999988875  8999999999999999999886 577


Q ss_pred             HHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhcCC
Q 012683          409 GAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFHGTD  456 (458)
Q Consensus       409 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~  456 (458)
                      |.++...+++++|+..++++++.+|++..++..++.++.++++..++.
T Consensus       151 ~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         151 FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             HHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHH
Confidence            899999999999999999999999999999999999999999887654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.1e-11  Score=115.70  Aligned_cols=120  Identities=8%  Similarity=-0.061  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAA  411 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  411 (458)
                      ..+..+...|..+.+.+++++|+..|.+++..+|.  .++.++|.++...|++++|+.+|.+|++++|+++.+|+.+|.+
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL  195 (497)
T ss_dssp             -------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            34566788999999999999999999999987754  6888999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          412 LRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       412 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      +...|++.+|+.+|.+|+..+|..+.++.+|..++.+..+..
T Consensus       196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~  237 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR  237 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999988776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.9e-10  Score=86.74  Aligned_cols=83  Identities=11%  Similarity=0.001  Sum_probs=73.9

Q ss_pred             HHHHHHhhhHHHh---hccHHHHHHHHHHhhccCCCc--hhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 012683          334 AAEAKARGDEAFK---QKDYLMAVDAYTQAIDFDPSD--ATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYRE  408 (458)
Q Consensus       334 ~~~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  408 (458)
                      ++.+++.|..+++   .+++++|+..|++++..+|.+  ..+|+++|.+|.++|++++|+++|+++++++|++..+...+
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            5678899999986   456778999999999998765  46999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 012683          409 GAALRLLE  416 (458)
Q Consensus       409 a~~~~~~~  416 (458)
                      +.+..+++
T Consensus       113 ~~I~~~~~  120 (122)
T d1nzna_         113 RLIDKAMK  120 (122)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            88876654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=6.5e-10  Score=87.86  Aligned_cols=90  Identities=12%  Similarity=0.058  Sum_probs=78.3

Q ss_pred             HHHHHHHhhhHHHh----------hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCC-----------HHHHHHHH
Q 012683          333 KAAEAKARGDEAFK----------QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQ-----------AEHALADA  391 (458)
Q Consensus       333 ~~~~~~~~g~~~~~----------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~  391 (458)
                      .++.+...|.++..          .+.+++|+..|++|++++|+++.+|+++|.+|..+|+           |.+|++.|
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~  109 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF  109 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence            35677788887764          4567899999999999999999999999999988764           79999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHhhhHHHHH
Q 012683          392 KACRALRPDWPKACYREGAALRLLEKFDEAA  422 (458)
Q Consensus       392 ~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~  422 (458)
                      ++|+.++|++..++..++.+....+.+.++.
T Consensus       110 ~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1         110 QQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988777777764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.95  E-value=5.8e-10  Score=97.35  Aligned_cols=115  Identities=15%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             hhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHH
Q 012683          340 RGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFD  419 (458)
Q Consensus       340 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~  419 (458)
                      +++.+++.|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|++..++..++.++...+..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhhhhhc
Q 012683          420 EAANAFYEGVTL-DPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       420 ~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      ++...+...... +|+....+...+.+....++..+
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~  117 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ  117 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHH
Confidence            888776654443 56556666666666666665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=9.5e-10  Score=98.15  Aligned_cols=124  Identities=10%  Similarity=0.132  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccC------CCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC---
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFD------PSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDW---  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~---  401 (458)
                      ++-++.+...|+.+...++|++|++.|.+|+++.      +.....|.++|.||.++|++++|+..+++++.+.+..   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            4456778888888889999999999999999863      2235678899999999999999999999998886554   


Q ss_pred             ---hHHHHHHHHHHHH-hhhHHHHHHHHHHhhccCCC------cHHHHHHHHHHHHHhhhhhc
Q 012683          402 ---PKACYREGAALRL-LEKFDEAANAFYEGVTLDPE------NKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       402 ---~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~  454 (458)
                         ..++..+|.++.. .|++++|++.|++++++.+.      ...++..++.++..++++.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~  176 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence               5677888888855 69999999999998876332      24557778888887777654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.5e-08  Score=75.31  Aligned_cols=84  Identities=10%  Similarity=-0.079  Sum_probs=75.8

Q ss_pred             hhHHHhHHHHHHhhC---CHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 012683          368 ATLLSNRSLCWIRLG---QAEHALADAKACRALRPDWP-KACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFR  443 (458)
Q Consensus       368 ~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~  443 (458)
                      ....|+.|.|+.+..   +..+|+..++.+++.+|... +++|.+|.+|+++|+|+.|+.+++++++.+|++.++.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            678899999998654   56799999999999999765 79999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 012683          444 EAVEAGRK  451 (458)
Q Consensus       444 ~~~~~~~~  451 (458)
                      .+..++.+
T Consensus       115 ~Ie~~~~k  122 (124)
T d2pqrb1         115 MVEDKIQK  122 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88887765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=1.6e-09  Score=98.82  Aligned_cols=109  Identities=11%  Similarity=-0.129  Sum_probs=101.4

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      .....+...+.+.+++..|.+++...|.....+..+|.++...+++.+|+..+.+++..+|++..+++.+|.++...|++
T Consensus       213 ~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  292 (334)
T d1dcea1         213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE  292 (334)
T ss_dssp             HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCH
Confidence            34445666788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      ++|+++|+++++++|.+..++..++..+.
T Consensus       293 ~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         293 KETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            99999999999999999999998877766

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=1.4e-08  Score=90.42  Aligned_cols=122  Identities=11%  Similarity=-0.021  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc------hhHHHhHHHHHHh-hCCHHHHHHHHHHHHHhCCC----
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD------ATLLSNRSLCWIR-LGQAEHALADAKACRALRPD----  400 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~----  400 (458)
                      ..+..+.+.|.++.+.|++++|++.|++++++.+..      ..++.++|.++.. .|++++|+..|.+|+.+.+.    
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~  154 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            457789999999999999999999999999986554      5688899988865 69999999999999987432    


Q ss_pred             --ChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcH-------HHHHHHHHHHHHhhhhh
Q 012683          401 --WPKACYREGAALRLLEKFDEAANAFYEGVTLDPENK-------ELVFAFREAVEAGRKFH  453 (458)
Q Consensus       401 --~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~  453 (458)
                        ...++.++|.++..+|+|++|++.|++++...|..+       ..+...+.++...++..
T Consensus       155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  216 (290)
T d1qqea_         155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV  216 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHH
Confidence              256689999999999999999999999999887764       33445555555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.5e-09  Score=104.63  Aligned_cols=112  Identities=8%  Similarity=-0.028  Sum_probs=72.4

Q ss_pred             hhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHH
Q 012683          341 GDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDE  420 (458)
Q Consensus       341 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~  420 (458)
                      +......+.|++|+..|++++.++|++...+.++|.++.+.|++++|+..+.++++++|.  .+++++|.++...|+|++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~  170 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHH
Confidence            444455678999999999999999999999999999999999999999999999998874  689999999999999999


Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhhc
Q 012683          421 AANAFYEGVTLDPENKELVFAFREAVEAGRKFHG  454 (458)
Q Consensus       421 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  454 (458)
                      |+.+|++|++++|++...+.+++.++...++..+
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~  204 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT  204 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999998877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.67  E-value=9.1e-09  Score=82.33  Aligned_cols=87  Identities=15%  Similarity=0.059  Sum_probs=72.8

Q ss_pred             hHHHhH--HHHHHhhCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Q 012683          369 TLLSNR--SLCWIRLGQAEHALADAKACRALRPDWP------------KACYREGAALRLLEKFDEAANAFYEGVTLDPE  434 (458)
Q Consensus       369 ~~~~~~--a~~~~~~~~~~~A~~~~~~a~~~~p~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  434 (458)
                      .+|..+  |..++..|+|++|+..|++|+++.|+.+            .+|.++|.+|..+|+|++|+..+.+++++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            444444  7888899999999999999999988754            57899999999999999999999999976442


Q ss_pred             -----------cHHHHHHHHHHHHHhhhhhcC
Q 012683          435 -----------NKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       435 -----------~~~~~~~l~~~~~~~~~~~~~  455 (458)
                                 ...++++++.++..+++++++
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA  119 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEA  119 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHH
Confidence                       234678899999999987754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=1.3e-07  Score=85.62  Aligned_cols=123  Identities=13%  Similarity=-0.048  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCch-----hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDA-----TLLSNRSLCWIRLGQAEHALADAKACRALRPDW----  401 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----  401 (458)
                      .-.++...-+|..++..|++++|+..|+++++..|.+.     .++..+|.++...|++++|+..|++++++.|..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            34566777789999999999999999999999998863     588899999999999999999999999876543    


Q ss_pred             --hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC--------CcHHHHHHHHHHHHHhhhhh
Q 012683          402 --PKACYREGAALRLLEKFDEAANAFYEGVTLDP--------ENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       402 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~~~~~  453 (458)
                        ..+++.++.++...|++..|...+.+++.+.+        ....+...++.++...++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  150 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD  150 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchh
Confidence              46778999999999999999999999886432        12345667777777766554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=3.2e-07  Score=67.93  Aligned_cols=82  Identities=11%  Similarity=-0.042  Sum_probs=70.3

Q ss_pred             HHHHHHhhhHHHhh---ccHHHHHHHHHHhhccCCCch-hHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQ---KDYLMAVDAYTQAIDFDPSDA-TLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ++.-|+.|..+.+.   ++..+||..++++++.+|.+. ..+|++|.+|.++|+|++|.++++++++++|++..+...+-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            35668888888755   567899999999999998765 79999999999999999999999999999999999887766


Q ss_pred             HHHHHh
Q 012683          410 AALRLL  415 (458)
Q Consensus       410 ~~~~~~  415 (458)
                      .+...+
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=5.7e-07  Score=80.33  Aligned_cols=96  Identities=10%  Similarity=-0.087  Sum_probs=53.1

Q ss_pred             HHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh-hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhh
Q 012683          338 KARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR-LGQAEHALADAKACRALRPDWPKACYREGAALRLLE  416 (458)
Q Consensus       338 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~  416 (458)
                      ...+....+.+++++|.+.|.+++...|.+...|...|..... .|+.+.|...|++++...|+++..+...+..+...|
T Consensus       138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g  217 (308)
T d2onda1         138 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC
Confidence            3444444455555555555555555555555555555544322 345555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHHhhccCC
Q 012683          417 KFDEAANAFYEGVTLDP  433 (458)
Q Consensus       417 ~~~~A~~~~~~a~~~~p  433 (458)
                      +++.|...|++|++..|
T Consensus       218 ~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         218 EDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             CHHHHHHHHHHHHHSSS
T ss_pred             ChHHHHHHHHHHHHhCC
Confidence            55555555555555444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.42  E-value=3.4e-07  Score=79.42  Aligned_cols=78  Identities=18%  Similarity=0.081  Sum_probs=71.4

Q ss_pred             HHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhhh
Q 012683          376 LCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKFH  453 (458)
Q Consensus       376 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  453 (458)
                      .-.++.|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+...++.++...+...
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            445678999999999999999999999999999999999999999999999999999999999999988877665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=2.9e-07  Score=74.88  Aligned_cols=89  Identities=10%  Similarity=-0.108  Sum_probs=80.8

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCC----------------------hHHHHHHHHHHHHhhhHHHHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDW----------------------PKACYREGAALRLLEKFDEAANA  424 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~  424 (458)
                      ....+...|......|++++|++.|.+|+.+.+..                      ..++..++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            45778899999999999999999999999997654                      26788999999999999999999


Q ss_pred             HHHhhccCCCcHHHHHHHHHHHHHhhhhhcC
Q 012683          425 FYEGVTLDPENKELVFAFREAVEAGRKFHGT  455 (458)
Q Consensus       425 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~  455 (458)
                      +++++..+|.+..++..+..++.++|+..++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eA  120 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDA  120 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999999887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=4.4e-07  Score=82.03  Aligned_cols=102  Identities=13%  Similarity=-0.021  Sum_probs=89.2

Q ss_pred             HHHHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCc----hhHHHhHHHHHHhhCCHHHHHHHHHHHHHh------CCCC
Q 012683          332 KKAAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSD----ATLLSNRSLCWIRLGQAEHALADAKACRAL------RPDW  401 (458)
Q Consensus       332 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~p~~  401 (458)
                      ..+..+...|..+...|++++|...+++++...|.+    ...+.++|.++...|++++|+..+++++..      .|..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  290 (366)
T d1hz4a_         211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL  290 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH
Confidence            345567788999999999999999999999987765    356778999999999999999999999854      4666


Q ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC
Q 012683          402 PKACYREGAALRLLEKFDEAANAFYEGVTLDP  433 (458)
Q Consensus       402 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p  433 (458)
                      ..+++.+|.+|...|++++|++.|++|+++.+
T Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999999998744

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2.7e-06  Score=75.83  Aligned_cols=116  Identities=13%  Similarity=-0.012  Sum_probs=76.3

Q ss_pred             HHHhhhHHHhhccHHHHHHHHHHhhccCCCchh-HHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-H
Q 012683          337 AKARGDEAFKQKDYLMAVDAYTQAIDFDPSDAT-LLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALR-L  414 (458)
Q Consensus       337 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~-~  414 (458)
                      +...+......|++++|...|.++++..|.+.. +|..++....+.|++++|.+.|.++++..|.....|...|.... .
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~  181 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            444555566667777777777777776665543 56666666667777777777777777777777766666666543 3


Q ss_pred             hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHhhhh
Q 012683          415 LEKFDEAANAFYEGVTLDPENKELVFAFREAVEAGRKF  452 (458)
Q Consensus       415 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  452 (458)
                      .|+.+.|...|+++++.+|+++.++..+...+...++.
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~  219 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCh
Confidence            46667777777777777777777666666666655544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=4.6e-05  Score=65.70  Aligned_cols=108  Identities=15%  Similarity=0.174  Sum_probs=89.4

Q ss_pred             HHHHHHhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 012683          334 AAEAKARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREG  409 (458)
Q Consensus       334 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a  409 (458)
                      ++++...|..++++++|++|++.|++|.+.  .+..+.+++|.+|..    ..++..|...+..+....  ++.+.+.+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            568999999999999999999999999876  588999999999998    679999999999988655  778889999


Q ss_pred             HHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Q 012683          410 AALRL----LEKFDEAANAFYEGVTLDPENKELVFAFREAVE  447 (458)
Q Consensus       410 ~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  447 (458)
                      .++..    ..+.+.|...|+.+....  ...+...++....
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~  117 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH  117 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhccccc
Confidence            88865    468899999999998764  3445555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=8.6e-05  Score=56.52  Aligned_cols=81  Identities=10%  Similarity=0.024  Sum_probs=59.3

Q ss_pred             ccHHHHHHHHHHhhccCCCchhHHHhHHHHHHh----hCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hhhHH
Q 012683          348 KDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIR----LGQAEHALADAKACRALRPDWPKACYREGAALRL----LEKFD  419 (458)
Q Consensus       348 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~  419 (458)
                      .++++|+..|+++.+.  .++.+.+++|..|..    ..++.+|++.|+++.+.  .++.+.+.+|.+|..    ..+++
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            4677788888887765  467777888887765    44677888888887765  467777888887766    45788


Q ss_pred             HHHHHHHHhhccC
Q 012683          420 EAANAFYEGVTLD  432 (458)
Q Consensus       420 ~A~~~~~~a~~~~  432 (458)
                      +|+++|++|.++.
T Consensus       113 ~A~~~~~~Aa~~G  125 (133)
T d1klxa_         113 QAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
Confidence            8888888877654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.77  E-value=0.00012  Score=55.67  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=78.8

Q ss_pred             hccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hhhHHHHH
Q 012683          347 QKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL----LEKFDEAA  422 (458)
Q Consensus       347 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~~A~  422 (458)
                      +.|+++|+..|+++.+..  ++.+.++++..  ...++++|++.++++.+.  .++.+.+.+|.+|..    ..+++.|+
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~--~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN--SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC--TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhccc--cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            358999999999999874  56667777643  467899999999999875  689999999999976    56899999


Q ss_pred             HHHHHhhccCCCcHHHHHHHHHHHHH
Q 012683          423 NAFYEGVTLDPENKELVFAFREAVEA  448 (458)
Q Consensus       423 ~~~~~a~~~~p~~~~~~~~l~~~~~~  448 (458)
                      ++|+++.+.  .++.+...|+.++..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999999875  578899999998765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.32  E-value=0.00065  Score=58.11  Aligned_cols=78  Identities=12%  Similarity=0.053  Sum_probs=67.9

Q ss_pred             chhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hhhHHHHHHHHHHhhccCCCcHHHHHHH
Q 012683          367 DATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRL----LEKFDEAANAFYEGVTLDPENKELVFAF  442 (458)
Q Consensus       367 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l  442 (458)
                      ||.+++++|..+...+++.+|++.|++|.+.  +++.+++.+|.+|..    ..++..|...++.+...  +++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            5789999999999999999999999999875  588999999999987    67999999999998754  577888888


Q ss_pred             HHHHHH
Q 012683          443 REAVEA  448 (458)
Q Consensus       443 ~~~~~~  448 (458)
                      +.+...
T Consensus        77 ~~~~~~   82 (265)
T d1ouva_          77 GNLYYS   82 (265)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            777653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.38  E-value=2.4  Score=36.41  Aligned_cols=102  Identities=9%  Similarity=-0.037  Sum_probs=62.1

Q ss_pred             HhhhHHHhhccHHHHHHHHHHhhccCCCchhHHHhHHHHHHhhCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhH
Q 012683          339 ARGDEAFKQKDYLMAVDAYTQAIDFDPSDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRLLEKF  418 (458)
Q Consensus       339 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~  418 (458)
                      .....+.+.++|..|.+...++     +++..|.....+..+..+...|.. +...+   -..+.-.-..-..+...|.+
T Consensus        45 rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~---~~~~d~l~~~v~~ye~~~~~  115 (336)
T d1b89a_          45 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM-CGLHI---VVHADELEELINYYQDRGYF  115 (336)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTT---TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHh---hcCHHHHHHHHHHHHHcCCh
Confidence            3344455556666666555443     345566666666666555544311 11111   12334444566677888888


Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Q 012683          419 DEAANAFYEGVTLDPENKELVFAFREAVEAG  449 (458)
Q Consensus       419 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  449 (458)
                      ++....+..++..++.+...++.+..++.+.
T Consensus       116 e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_         116 EELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            9988888888888888888888887776543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.41  E-value=0.75  Score=29.71  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             HHHHHHHHHhhhHHHhhccHHHHHHHHHHhh
Q 012683          331 KKKAAEAKARGDEAFKQKDYLMAVDAYTQAI  361 (458)
Q Consensus       331 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  361 (458)
                      ...|-.+-.++..+.+.|.|++||+++++|.
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555666777777777777777766544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.06  E-value=0.63  Score=31.53  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhhhHHHhhccHHHHHHHHHHhhc
Q 012683          330 IKKKAAEAKARGDEAFKQKDYLMAVDAYTQAID  362 (458)
Q Consensus       330 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  362 (458)
                      ....|-.+..+|..+-..|+|++|+.+|.++++
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456677788888888899999999988887765