Citrus Sinensis ID: 012695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MRGKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQPS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrgkvrrrptesalqptpdlyggnrfggsrdsdasfassrpssigmgrasaadlytdrshqsSAIRAINAhlsshsfhiafplkqvpsvkdITDVIKFLISqldypsttkfEEDLFVVLKSlscpfkinkstlrspnsphnwpAYLALIHWLVQIASYnyhlttnskafvENNSMYMYASDSYLnyiegkdgdvdniDKGFIEKLEKEKENVSEYVEELKKKVSEmegamtgpterekLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSlnsngstpsevmgvdykstlKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEvsakkflflqps
Flexible Loop (DISEMBL)
mrgkvrrrptesalqptpdlyggnrfGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINkstlrspnspHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKkvsemegamtgptereklekekCVLEEDLNKfnaiigelnmrkEKMEKLVEEKereigkkveehkriceeneefkkrvklqtinardverMRRELQAVERDiadaenarnewesktwdldskLGRKFKELEALSMECNQAMKRLKLATEIQYSLnsngstpsevMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHInevsakkflflqps
Low Complexity Region (SEG)
MRGKVRRRPTESALQPTPDLYGGNRFGGsrdsdasfassrpssIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTereklekekcvleedlNKFNAIIGELNmrkekmeklveekereIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQPS
Disordered region (IsUnstruct)
****************************************************************IRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLR***SPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIE****************************************CVLEEDLNKFNAIIGEL*****************************************************************************W**************************************************************************************************IDALQFHINEVSAKKFLFL***
Disordered Region (DISOPRED)
*********************************************************RSHQSSAIRAINAHLSSH***************DITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEK****************************************************************************************************************************************************************************************************************************************************FLF****
Disordered Region (DISEMBL)
*************LQPTPDLYGGNRFGG*****************MGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQPS
Disordered Region (DISPRO)
*************************************************SAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFxxxxxxxxxxxxxxxxxxxxxxxxxxxxMTGPTEREKLEKEKCVLEEDLNKFNAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxHKRICEENEEFKKRVKLQTINARDxxxxxxxxxxxxxxxxxxxxxxxxxxxxTWDLDSKLGRKFKExxxxxxxxxxxxxxxxxxxxxQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q4R630	642	Kinetochore protein NDC80	N/A	no	0.766	0.546	0.244	3e-17
O14777	642	Kinetochore protein NDC80	yes	no	0.766	0.546	0.241	7e-17
Q8AWF5	638	Kinetochore protein NDC80	N/A	no	0.731	0.525	0.221	9e-16
P0CP16	703	Probable kinetochore prot	yes	no	0.847	0.551	0.209	2e-15
Q9D0F1	642	Kinetochore protein NDC80	yes	no	0.663	0.473	0.220	3e-15
P0CP17	703	Probable kinetochore prot	N/A	no	0.847	0.551	0.209	3e-15
Q5U4X5	640	Kinetochore protein NDC80	yes	no	0.731	0.523	0.216	6e-15
Q5B3B1	738	Probable kinetochore prot	yes	no	0.753	0.467	0.235	9e-15
Q6BPZ9	650	Probable kinetochore prot	yes	no	0.816	0.575	0.224	2e-14
Q10198	624	Kinetochore protein ndc80	yes	no	0.820	0.602	0.232	4e-14

>sp|Q4R630|NDC80_MACFA Kinetochore protein NDC80 homolog OS=Macaca fascicularis GN=NDC80 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 174/405 (42%), Gaps = 54/405 (13%)

Query: 4   KVRRRPTESAL---QPTPD----LYGGNRFG-GSRDSDASFASSRPSSIGMGRASAADLY 55
           + + RPT   L   +PT +    L+G    G GSR+S     SS    I   R       
Sbjct: 33  QTKERPTFGKLSINKPTSERKVSLFGKRTSGHGSRNSQLGIFSS-SEKIKDPRP-----L 86

Query: 56  TDRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TT 109
            D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     T
Sbjct: 87  NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDT 145

Query: 110 KFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF 169
           KFEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F
Sbjct: 146 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLF 205

Query: 170 -------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFI 202
                        + +N +++ Y    Y +++ G D              D+ N+D   +
Sbjct: 206 DDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKL 265

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
           E LE +   ++E +  L+++  E E     P   E L K K  L+ D+ K+ A +  L  
Sbjct: 266 ESLEAKNRALNEQIARLEQE-REKE-----PNRLESLRKLKASLQGDVQKYQAYMSNLES 319

Query: 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
               +++ +     EI +   E + I +EN   +  +  Q  +  D+ER+  E   +++ 
Sbjct: 320 HSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQT 379

Query: 323 IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367
           I          + K W+ + K  R  + +E    E ++  ++LKL
Sbjct: 380 INKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKL 424

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.
Macaca fascicularis (taxid: 9541)

>sp|O14777|NDC80_HUMAN Kinetochore protein NDC80 homolog OS=Homo sapiens GN=NDC80 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 174/405 (42%), Gaps = 54/405 (13%)

Query: 4   KVRRRPTESAL---QPTPD----LYGGNRFG-GSRDSDASFASSRPSSIGMGRASAADLY 55
           + + +PT   L   +PT +    L+G    G GSR+S     SS    I   R       
Sbjct: 33  QTKEKPTFGKLSINKPTSERKVSLFGKRTSGHGSRNSQLGIFSS-SEKIKDPRP-----L 86

Query: 56  TDRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TT 109
            D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     T
Sbjct: 87  NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDT 145

Query: 110 KFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF 169
           KFEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F
Sbjct: 146 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLF 205

Query: 170 -------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFI 202
                        + +N +++ Y    Y +++ G D              D+ N+D   +
Sbjct: 206 DDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKL 265

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
           E LE +   ++E +  L+++  E E     P   E L K K  L+ D+ K+ A +  L  
Sbjct: 266 ESLEAKNRALNEQIARLEQE-REKE-----PNRLESLRKLKASLQGDVQKYQAYMSNLES 319

Query: 263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
               +++ +     EI +   E + I +EN   +  +  Q  +  D+ER+  E   +++ 
Sbjct: 320 HSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDNQKYSVADIERINHERNELQQT 379

Query: 323 IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367
           I          + K W+ + K  R  + +E    E ++  ++LKL
Sbjct: 380 INKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKLARKLKL 424

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Homo sapiens (taxid: 9606)

>sp|Q8AWF5|NDC80_XENLA Kinetochore protein NDC80 homolog OS=Xenopus laevis GN=ndc80 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 167/375 (44%), Gaps = 40/375 (10%)

Query: 26  FGGSRDSDASFASSRPSSIGMGRASAADL--YTDRSHQSSAIRAINAHLSSHSFHIAFPL 83
           F G R S+ +  +S+  + G G     D     D++     IR +   L+ + +  A  +
Sbjct: 55  FFGKRASNGTARTSQYGAFG-GTEKIKDPRPLHDKAFIQQCIRQLCEFLNENGYSQALTV 113

Query: 84  K--QVPSVKDITDVIKFLISQL--DYPST-TKFEEDLFVVLKSLSCPFKINKSTLRSPNS 138
           K  Q PS KD   +  F+ + +  +Y +  +KFEE++  + K L  PF ++KS++ +  +
Sbjct: 114 KSLQGPSTKDFLKIFAFIYTFICPNYENPESKFEEEIPRIFKELGYPFALSKSSMYTVGA 173

Query: 139 PHNWPAYLALIHWLVQIASYNYHLTTNSKAF------------VENNSMYM-YASDSYLN 185
           PH WP  +A + WL+        L + +  F            ++ N +++ Y    Y  
Sbjct: 174 PHTWPQIVAALVWLIDCVKLCCVLRSENPVFEDPPMGEQSENGIDFNQLFLDYTVRCYDQ 233

Query: 186 YIEGKDG----DVD---------NIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
           ++EG+D     D D         ++D+  +E L++E   + E +E L+K+          
Sbjct: 234 FMEGRDTFEEYDTDVCIRLKEAYHVDESNLEALQQESRRLMEEIERLEKEKE------NE 287

Query: 233 PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292
           P     + K K  L+ D+ K+   + E+      +++ V     E+     E + I +EN
Sbjct: 288 PDRLASMRKLKASLQADIQKYQNYLTEIESHSTLLDQRVSSISEELEATELESRAIQQEN 347

Query: 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
              K  +  Q  +  D+ER++ E   +++ IA      +E + + W  + K  +  + +E
Sbjct: 348 LRLKNILDNQKYSVADIERIKYEETELQQTIAKLTKDLDEDKQQLWHEELKYAKMKESVE 407

Query: 353 ALSMECNQAMKRLKL 367
               E ++  ++++L
Sbjct: 408 TQLSEFHKIGRKVRL 422

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Xenopus laevis (taxid: 8355)

>sp|P0CP16|NDC80_CRYNJ Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=NDC80 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/467 (20%), Positives = 202/467 (43%), Gaps = 79/467 (16%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLKQV--PSVKDITDVIKFLISQLDYPSTT---KF 111
           D+  QS+ +R +N +L S  + +    K +  P+ K+   + KFL++ L  P      KF
Sbjct: 140 DKVFQSNCMRNVNEYLISVRYPLPLTAKTLTSPTAKEFQSIFKFLVNDLVDPGAAWGKKF 199

Query: 112 EEDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQI--ASYNYH------ 161
           E+D   +LK L  P    ++K+ L +P +P +WP  LA+++WLV +  A  N+       
Sbjct: 200 EDDTLSILKDLKYPGMDSVSKTALTAPGAPQSWPNMLAMLNWLVDLCKALDNWDDPEIIS 259

Query: 162 --LTTNSKAF------VENNSMYMYASDSYLNYIEGKDGDVDNIDKGF------------ 201
             L   +         +++  ++ +A+ +Y  + +G+  + D  ++              
Sbjct: 260 DPLMVPATELPLDYPNLDDRLLWDFAAKTYSQWFDGEAEEFDEAEQELEHAYGKSYSIVL 319

Query: 202 -----------------IEKLEKEKE---------NVSEYVEELKKKVSEMEGAMTGPTE 235
                             EKLE+E +         +V E    +  ++S  + +   P  
Sbjct: 320 NDTEQATDRMASATVAECEKLEREIQKRNVEIQQLHVQEVCSPITDRISFADKSYKPPL- 378

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKME-KLVEEKEREIGKKVEEHKRICEENEE 294
            +KLE E   L  D NKF + + +   + EK+  ++ + KE  I ++ E   R  E    
Sbjct: 379 -KKLEDEYVQLMSDKNKFISFLDQQGQKIEKIRLRISKVKEAVISQEAELEARQSEL-AH 436

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            ++ V  Q ++  +V+RM  E  ++ R + D  N  +E     +D +  + +     E L
Sbjct: 437 IEQAVAAQNLSPDEVQRMNHERDSLTRSLEDLRNKISEASQFAYDQEMVVTKSMDRFEGL 496

Query: 355 SMECNQAMKRL----------KLATEIQYSLNSN-GSTPSE---VMGVDYKSTLKPALES 400
             + N    ++           LA  + Y+L+ + G+   E    +GV  +ST+  AL++
Sbjct: 497 LTDYNSLAHQIGLLDSSLDVPSLAANVNYNLDVDLGAEELEEVKAVGVRMRSTIWQALQT 556

Query: 401 FADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447
             +  ++ ++      I+L+ +  ++   +E +++ +  L+  +  V
Sbjct: 557 CRETFRQEALGLGNGTIALEDEFDKLGQSVERQKEEVGNLEVRLKIV 603

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|Q9D0F1|NDC80_MOUSE Kinetochore protein NDC80 homolog OS=Mus musculus GN=Ndc80 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 151/344 (43%), Gaps = 40/344 (11%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
           D++     IR +   L+ + +  +  +K  Q PS K+   +  FL   L  PS     TK
Sbjct: 88  DKAFIQQCIRQLYEFLTENGYVYSVSMKSLQAPSTKEFLKIFAFLYGFL-CPSYELPGTK 146

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
            EE++  + K+L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct: 147 CEEEVPRIFKALGYPFTLSKSSMYTVGAPHTWPHIVAALVWLIDCIKIDTAMKESSPLFD 206

Query: 170 ------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFIE 203
                       +++N +++ Y    Y  ++ G D              D+  +D   +E
Sbjct: 207 DGQLWGEETEDGIKHNKLFLEYTKKCYEKFMTGADSFEEEDAELQAKLKDLYKVDASKLE 266

Query: 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR 263
            LE E + ++E +  L+++          P     L+K K  L+ D+  + A +  L   
Sbjct: 267 SLEAENKALNEQIARLEEERE------REPNRLMSLKKLKASLQADVQNYKAYMSNLESH 320

Query: 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323
              +++     + EIG+  +E + + +EN   +  V  Q  +  D+ER+  E   +++ I
Sbjct: 321 LAVLKQKSNSLDEEIGRVEQECETVKQENTRLQSIVDNQKYSVADIERINHEKNELQQTI 380

Query: 324 ADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL 367
                     + + W+ + K  R  + +EA   E ++  ++LKL
Sbjct: 381 NKLTKDLEAEQQQMWNEELKYARGKEAIEAQLAEYHKLARKLKL 424

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity. Required for kinetochore integrity and the organization of stable microtubule binding sites in the outer plate of the kinetochore.

Mus musculus (taxid: 10090)

>sp|P0CP17|NDC80_CRYNB Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NDC80 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/467 (20%), Positives = 202/467 (43%), Gaps = 79/467 (16%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLKQV--PSVKDITDVIKFLISQLDYPSTT---KF 111
           D+  QS+ +R +N +L S  + +    K +  P+ K+   + KFL++ L  P      KF
Sbjct: 140 DKVFQSNCMRNVNEYLISVRYPLPLTAKTLTSPTAKEFQSIFKFLVNDLVDPGAAWGKKF 199

Query: 112 EEDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQI--ASYNYH------ 161
           E+D   +LK L  P    ++K+ L +P +P +WP  LA+++WLV +  A  N+       
Sbjct: 200 EDDTLSILKDLKYPGMDSVSKTALTAPGAPQSWPNMLAMLNWLVDLCKALDNWDDPEIIS 259

Query: 162 --LTTNSKAF------VENNSMYMYASDSYLNYIEGKDGDVDNIDKGF------------ 201
             L   +         +++  ++ +A+ +Y  + +G+  + D  ++              
Sbjct: 260 DPLMVPATELPLDYPNLDDRLLWDFAAKTYSQWFDGEAEEFDEAEQELEHAYGKSYSIVL 319

Query: 202 -----------------IEKLEKEKE---------NVSEYVEELKKKVSEMEGAMTGPTE 235
                             EKLE+E +         +V E    +  ++S  + +   P  
Sbjct: 320 NDTEQATDRMASATVAECEKLEREIQKRNVEIQQLHVQEVCSPITDRISFADKSYKPPL- 378

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKME-KLVEEKEREIGKKVEEHKRICEENEE 294
            +KLE E   L  D NKF + + +   + EK+  ++ + KE  I ++ E   R  E    
Sbjct: 379 -KKLEDEYVQLMSDKNKFISFLDQQGQKIEKIRLRISKVKEAVISQEAELEARQSEL-AH 436

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            ++ V  Q ++  +V+RM  E  ++ R + D  N  +E     +D +  + +     E L
Sbjct: 437 IEQAVAAQNLSPDEVQRMNHERDSLTRSLEDLRNKISEASQFAYDQEMVVTKSMDRFEGL 496

Query: 355 SMECNQAMKRL----------KLATEIQYSLNSN-GSTPSE---VMGVDYKSTLKPALES 400
             + N    ++           LA  + Y+L+ + G+   E    +GV  +ST+  AL++
Sbjct: 497 LTDYNSLAHQIGLLDFSLDVPSLAANVNYNLDVDLGAEELEEVKAVGVRMRSTIWQALQT 556

Query: 401 FADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV 447
             +  ++ ++      I+L+ +  ++   +E +++ +  L+  +  V
Sbjct: 557 CREMFRQEALGLGNGTIALEDEFDKLGQSVERQKEEVGNLEVRLKIV 603

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q5U4X5|NDC80_XENTR Kinetochore protein NDC80 homolog OS=Xenopus tropicalis GN=ndc80 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 166/375 (44%), Gaps = 40/375 (10%)

Query: 26  FGGSRDSDASFASSRPSSIGMGRASAADL--YTDRSHQSSAIRAINAHLSSHSFHIAFPL 83
           F G R S+ +  +S+  + G G     D     D++     IR +   L+ + +     +
Sbjct: 55  FFGKRMSNGTARTSQYGAFG-GTEKIKDPRPLHDKAFIQQCIRQLCEFLNENGYSQTLTV 113

Query: 84  K--QVPSVKDITDVIKFLISQL--DYPST-TKFEEDLFVVLKSLSCPFKINKSTLRSPNS 138
           K  Q PS KD   +  F+ + +  +Y +  +KFEE++  + K L  PF ++KS++ +  +
Sbjct: 114 KSLQGPSTKDFLKIFAFIYTFICPNYENPESKFEEEIPRIFKELGYPFALSKSSMYTVGA 173

Query: 139 PHNWPAYLALIHWLVQIASYNYHLTTNSKAF------------VENNSMYM-YASDSYLN 185
           PH WP  +A + WL+        L + +  F            ++ N +++ Y    Y  
Sbjct: 174 PHTWPQIVAALVWLIDCVKLCCVLRSENPVFEEPQMGEQSENGIDFNQLFLDYTVRCYDQ 233

Query: 186 YIEGKDG----DVD---------NIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTG 232
           ++EG+D     D D         ++D+  +E L++E   + E +E L+K+          
Sbjct: 234 FMEGRDTFEEYDADMCIRLKEAYHVDESNLEALQQESRRLLEEIERLEKEKE------NE 287

Query: 233 PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292
           P     + K K  L+ D+ K+   + E+      +E+ V     ++     E + + +EN
Sbjct: 288 PDRLASMRKLKVSLQADIQKYQNYLTEIESHSTLLEQRVSSVSEDLEATELESRAVQQEN 347

Query: 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
              K  +  Q  +  D+ER++ E   +++ IA      +E + + W  + K  +  + +E
Sbjct: 348 LRLKNILDNQKYSVADIERIKYEENELQQTIAKLTKDLDEDKQQLWSEELKYAKMKESVE 407

Query: 353 ALSMECNQAMKRLKL 367
               E ++  ++++L
Sbjct: 408 TQLSEFHKIGRKVRL 422

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Xenopus tropicalis (taxid: 8364)

>sp|Q5B3B1|NDC80_EMENI Probable kinetochore protein ndc80 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ndc80 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 175/386 (45%), Gaps = 41/386 (10%)

Query: 3   GKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQS 62
           G +   P   +LQ    ++     GG+     SF +  PS+ G+ R        DRS Q+
Sbjct: 107 GSMSSNPASQSLQRRSSVFSRPSTGGAM-GHQSFFTQVPSAAGVPRDPRP--LRDRSFQA 163

Query: 63  SAIRAINAHLSSHSFHIAF--PLKQ----VPSVKDITDVIKFLISQLD--YPSTTKFEED 114
              + +  +L+ ++F +     L Q     P+ KD   + ++L  ++D  Y      + +
Sbjct: 164 RIAQELLEYLTHNNFELEMKHSLGQNTLRSPTQKDFNYIFQWLYHRIDPGYRFQKAMDAE 223

Query: 115 LFVVLKSLSCPFK--INKSTLRSPNSPHNWPAYLALIHWLVQIASY--NYHLTTNSKAFV 170
           +  +LK L  P++  I KS + +     NWP +L ++HWL+++A     + +    +A  
Sbjct: 224 VPPILKQLRYPYEKGITKSQIAAVGG-QNWPTFLGMLHWLMELAQMMDRFAMGEYDEACA 282

Query: 171 E-------NNSMYMYASDSYLNYIEGKDGDVDNIDKG----FIEKLEKEKENVSE-YVEE 218
           E       +  ++ + + +Y ++++G + + D+         IE + +E E  +E YV+E
Sbjct: 283 EMGVDVSGDRIIFRFLTGAYHDWLQGGEEEDDDAAAQRLIPHIELMAQEFEKGNEKYVQE 342

Query: 219 ----------LKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKME 268
                     L+ ++ E+E       +  KL+K+  +LE+D  KF   I  +  + EK E
Sbjct: 343 MQVLDAENRALRDQIEELE---KNAPDMAKLDKQFRILEDDKRKFEDYIQNVQGKIEKYE 399

Query: 269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN 328
             +   E EI K   E +   EE    +  V  Q +  +D++RM  E   ++R + DA +
Sbjct: 400 SRIAFLEDEIRKTESELQAAEEERAGLQASVDQQGLTIQDIDRMNTERDRLQRSLDDAVS 459

Query: 329 ARNEWESKTWDLDSKLGRKFKELEAL 354
              E  ++    +S+   K ++LE L
Sbjct: 460 RLEETHARVMAKESEASAKLEDLEEL 485

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6BPZ9|NDC80_DEBHA Probable kinetochore protein NDC80 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NDC80 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/424 (22%), Positives = 192/424 (45%), Gaps = 50/424 (11%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHI------AFPLKQVPSVKDITDVIKFLISQLD--YPST 108
           D+++Q+   + I   L ++ F +       F   + P+ KD   + +FL +++D  Y  T
Sbjct: 121 DKNYQTLIQQEIYDFLLANKFELEMNHPLTFKTLKQPTQKDFVVIFQFLYNKIDPYYRFT 180

Query: 109 TKFEEDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNS 166
              E ++F++LK L+ P+   IN+S + S     NWP +L +++WLV++      L  NS
Sbjct: 181 KSIETEVFLLLKILNYPYLDGINRSQI-SAVGGQNWPNFLGMLYWLVKLNLS--VLNLNS 237

Query: 167 KAFV-----ENNSMYM-YASDSYLNYIEGKD----------GDVDNIDKGFIEKLEKEKE 210
           K  +     E + +++ Y + SY  +I+ +D             D ++   I+ +E    
Sbjct: 238 KVDLISPDDEFDKIFINYITQSYRAFIDERDDYSEYYDEMKSRFDELNNNIIQDIE---- 293

Query: 211 NVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKL 270
           N+S    EL  + +E+ G +      E  EK+   LE DL KF A I  +  RK K  ++
Sbjct: 294 NISNENNELLNQYNELNGQLDI---LENSEKKSKALENDLIKFKAYIETMESRKSKWSEI 350

Query: 271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR 330
           + +  +EIG    E   I     +++ ++  Q +   D++ +  E   + + I    N+ 
Sbjct: 351 LNKITQEIGNCEVELNNIESVKRDYEAQIGQQGLTPNDIDNLNTERDKLSKSIDLISNSL 410

Query: 331 NEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT---EIQYSLNSNGST------ 381
            + +    +    L + ++ LE    + N  + +++L     +  + +N   +T      
Sbjct: 411 EDLKDVYHNKQINLQKNYQSLENFLKQYNNLIYKIQLKNHNYDYNFEINFRNNTIINETP 470

Query: 382 ----PSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRI 437
               P+E++  + K   K  L ++   +  +     +E I LQ+Q   ++  I  +R+ I
Sbjct: 471 DLLKPNEIINKNLKDE-KIQLLNYKSIINTNVHMHQDEQIKLQEQIDLISELIMERREEI 529

Query: 438 DALQ 441
           + L+
Sbjct: 530 ETLE 533

Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q10198|NDC80_SCHPO Kinetochore protein ndc80 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ndc80 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 189/434 (43%), Gaps = 58/434 (13%)

Query: 13  ALQPT--PDLYGGNRFGGSRDSDASFASSRP--SSIGMGRASAADLYTDRSHQSSAIRAI 68
            L PT  P L    R    R S+ASF S  P  +SI   R     L   R  Q  A + +
Sbjct: 59  VLTPTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRP----LSDRRYQQECATQVV 114

Query: 69  NAHL-SSHSFHIAFPLKQVPSVKDITDVIKFLISQLD--YPSTTKFEEDLFVVLKSLSCP 125
           N  L S  S  +    + +PS ++   + K L ++LD  +    ++EED+   LK+L+ P
Sbjct: 115 NYLLESGFSQPLGLNNRFMPSTREFAAIFKHLYNKLDPNFRFGARYEEDVTTCLKALNYP 174

Query: 126 F--KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFV---ENNSM----- 175
           F   I++S L +  SPH WPA L ++HW+V +       T  + A V   E NS+     
Sbjct: 175 FLDSISRSRLVAIGSPHVWPAILGMLHWVVSLI----QCTEKAVAMVYTVEQNSLDDHLV 230

Query: 176 ----YMYASDSYLNYIEGKD----------GDVDNIDKGFIEKLEKEKENVSEYVEELKK 221
               + Y   +Y  Y++                +  ++    + E  K    E + ++K 
Sbjct: 231 DKVLFDYLVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKS 290

Query: 222 KVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK 281
              E++ A+      + LE+    ++ D  KF + +  +  + E    L+++ +  I +K
Sbjct: 291 -AEELDSAI------QVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEK 343

Query: 282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLD 341
             + + + E+ +  K +V+ Q I+  + E+M  E + ++R++    +  +E   + +D D
Sbjct: 344 ESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMIGSKISELRKEVFDTD 403

Query: 342 SKLGRKFKELEALSMECNQAMKRLKL-------ATEIQYSLNSNGSTPSEVMGVDYKSTL 394
             +      LE    + N    R+ +       +    + L  N   P+ +  +D K+ +
Sbjct: 404 LLIQASIDSLEKKVQKFNSLAYRIGIVPIAAIRSANNDFELEINPEGPNYI-NLDLKNKV 462

Query: 395 KPALESFADDVKRS 408
           +P    F ++V+RS
Sbjct: 463 RP----FINEVRRS 472

Acts as a component of the NMS (Ndc80-MIND-Spc7) super complex which has a role in kinetochore function during late meiotic prophase and throughout the mitotic cell cycle. Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
255587682	574	hec1 protein, putative [Ricinus communis	0.984	0.785	0.620	1e-155
224054294	573	predicted protein [Populus trichocarpa]	0.967	0.773	0.592	1e-147
225455018	571	PREDICTED: kinetochore protein NDC80 hom	0.978	0.784	0.576	1e-139
147771819	735	hypothetical protein VITISV_035303 [Viti	0.978	0.609	0.576	1e-138
225448101	571	PREDICTED: kinetochore protein NDC80 hom	0.967	0.775	0.579	1e-138
359486113	571	PREDICTED: LOW QUALITY PROTEIN: kinetoch	0.969	0.777	0.546	1e-135
359486104	627	PREDICTED: LOW QUALITY PROTEIN: kinetoch	0.910	0.665	0.572	1e-129
359486098	552	PREDICTED: LOW QUALITY PROTEIN: kinetoch	0.930	0.771	0.525	1e-125
359486118	582	PREDICTED: LOW QUALITY PROTEIN: probable	0.906	0.713	0.583	1e-122
449464508	565	PREDICTED: kinetochore protein NDC80 hom	0.960	0.778	0.527	1e-122

>gi|255587682|ref|XP_002534355.1| hec1 protein, putative [Ricinus communis] gi|223525439|gb|EEF28028.1| hec1 protein, putative [Ricinus communis]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/459 (62%), Positives = 352/459 (76%), Gaps = 8/459 (1%)

Query: 1   MRGK-VRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           MRG   RRRPTES +   P     +R   SRDSDASFASSRPS+IG+GR+S  +LYTDR 
Sbjct: 1   MRGNNTRRRPTESLIPQQPPPPDHHRQFTSRDSDASFASSRPSTIGVGRSS--ELYTDRG 58

Query: 60  HQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVL 119
           HQ+SA+RAIN +LSSHS  ++     + S KDIT+V++FL+ QLDYP TTK E+DLF++L
Sbjct: 59  HQNSAVRAINTYLSSHSSSLSLRTHPISSAKDITEVLQFLLHQLDYP-TTKLEDDLFLIL 117

Query: 120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYA 179
           K L+CPFK++KS LR+PN+PHNWP++LALIHWLVQIA +  HL  NS+AFVENN+M +YA
Sbjct: 118 KFLNCPFKVSKSALRAPNTPHNWPSFLALIHWLVQIAMFEEHLAVNSRAFVENNTMLVYA 177

Query: 180 SDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEME----GAMTGPTE 235
            DSYL+YI G D  VD +D+ F+EKLEKE+E+V E V  L++   E+E    G  TGPTE
Sbjct: 178 LDSYLSYIRGDDDSVDALDREFMEKLEKERESVVESVRVLEENFKELEAKAEGLKTGPTE 237

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295
           REKLE  + VLEED+NKFNAII E N R E ++K++ EK  E+  KVEE KRI  ENE+ 
Sbjct: 238 REKLENLRNVLEEDVNKFNAIIAEFNSRIEGLDKVLVEKRNELETKVEERKRIDLENEDL 297

Query: 296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355
           KKRV+ Q+ NARD ERM+RELQAVER+I DAE+ARN WE K WDL++++G K+KELE LS
Sbjct: 298 KKRVEEQSFNARDAERMKRELQAVERNIGDAESARNSWEEKIWDLNTEIGHKYKELETLS 357

Query: 356 MECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEE 415
           M+CNQA++RLKL    QY LN+ GSTP+EVMGVDYKS +KP L SFADDVKRSS+ KLEE
Sbjct: 358 MDCNQAVRRLKLGNGFQYLLNAKGSTPTEVMGVDYKSVVKPGLASFADDVKRSSMAKLEE 417

Query: 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF 454
            ISLQQ SSE  AK EGK+ RI ALQ HI+EV A+  L 
Sbjct: 418 FISLQQGSSEFTAKTEGKKNRIAALQSHIDEVEARLILL 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054294|ref|XP_002298188.1| predicted protein [Populus trichocarpa] gi|222845446|gb|EEE82993.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/459 (59%), Positives = 336/459 (73%), Gaps = 16/459 (3%)

Query: 1   MRGKVRRRPTES-ALQPTPD----LYGGNRFGGSRDSDASFASSRPSSIGMGRASAADLY 55
           MRG   RRPT S   QPTPD     Y  N    SRDSDASFASSRPSSIG+GR   AD Y
Sbjct: 1   MRGASHRRPTNSFNPQPTPDHHRHQYANN---TSRDSDASFASSRPSSIGVGRT--ADPY 55

Query: 56  TDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDL 115
           T+++HQ+SAIRAINA+LSSHS  +  P    PS KDIT+ +K+L+ QLDY ST K E+DL
Sbjct: 56  TEKAHQASAIRAINAYLSSHSSKL-LPPNSTPSGKDITETLKYLLHQLDYEST-KLEDDL 113

Query: 116 FVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSM 175
             +LKSL+CPFK NKSTLR+PN+PHNWP+Y+A+IHWLVQ+A Y   L   + + VENNSM
Sbjct: 114 ASILKSLNCPFKFNKSTLRAPNTPHNWPSYVAIIHWLVQLAMYREDLAAKTGSLVENNSM 173

Query: 176 YMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----T 231
           +MYA DSYLNYI G D  V  +D  F+ KL KE+E+V E V  L+  + E E        
Sbjct: 174 FMYALDSYLNYIRGNDDSVLELDNEFMGKLGKERESVLENVRVLEASLKETEAKAEALRA 233

Query: 232 GPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEE 291
           GPTERE+LEKE+ VLEED+ KF+A+IGE     E +EK +EEK +E+  KVEE K++ EE
Sbjct: 234 GPTERERLEKERSVLEEDVKKFHAMIGEFTQGIEVLEKGLEEKRKEMETKVEEKKKLDEE 293

Query: 292 NEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351
           N+E KKRV+ Q+ N RD ERM+RELQ V+RDI +AE +RN WE K WDLD+ +  KFKE+
Sbjct: 294 NDELKKRVEEQSFNPRDAERMKRELQVVDRDIVEAEASRNAWEEKMWDLDATIAHKFKEI 353

Query: 352 EALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVE 411
           EAL+MECNQA +RLKL    QY  N+NGST +E+MG+DYK+T+KP LESFA  VK SS+ 
Sbjct: 354 EALAMECNQATRRLKLGNGYQYVPNANGSTAAEIMGLDYKTTIKPGLESFAAAVKGSSMA 413

Query: 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
           KLEELI LQ+QSSE+AAKIEGKR R   LQ HI+E+ A+
Sbjct: 414 KLEELILLQKQSSELAAKIEGKRNRTSTLQSHIDEMEAQ 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455018|ref|XP_002279662.1| PREDICTED: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/463 (57%), Positives = 351/463 (75%), Gaps = 15/463 (3%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFA SRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSFRPPPPPPPSVDHHRQLSRDSDASFAGSRPSSLGISRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP+ L ++HWLVQIA YN HL +N + F   ++ ++
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPSLLGVMHWLVQIALYNDHLVSNLQCF---DNTFV 173

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGP 233
           YA DSYL+YI G D  ++ +D+ F+ KLE+E++ V+E V+ L+K+V+E EG +     GP
Sbjct: 174 YALDSYLHYIRGDDDGMEAVDREFMGKLERERDAVAEGVKALEKEVAEREGRLEELRLGP 233

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293
           + +E +EKE+ VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENE
Sbjct: 234 SAKEVVEKERGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENE 293

Query: 294 EFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
           E KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEA
Sbjct: 294 ELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEA 353

Query: 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
           LS+ECNQA++RLKL   +QY LN+ GS+P+EV+G+DYKSTLKPAL+SFADD+ +SS+ KL
Sbjct: 354 LSIECNQALRRLKLGNGLQYVLNAKGSSPAEVLGIDYKSTLKPALDSFADDINKSSMSKL 413

Query: 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQ 456
           EELISLQQQS E AAKIE KR R+ ALQ   +EV A + +FL+
Sbjct: 414 EELISLQQQSVENAAKIEAKRNRLAALQSSSDEVEA-QLIFLK 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771819|emb|CAN66776.1| hypothetical protein VITISV_035303 [Vitis vinifera]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/463 (57%), Positives = 349/463 (75%), Gaps = 15/463 (3%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFASSRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSIRPPPPPAPSVDHHRQFSRDSDASFASSRPSSLGINRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP  L ++HWLVQIA YN HL +N + F   ++ ++
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMHWLVQIALYNDHLVSNLQCF---DNTFV 173

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGP 233
           YA DSYL+YI G D  ++ +D+ F+ KLE E++ V+E V+ L+K+V+E EG +    +GP
Sbjct: 174 YALDSYLHYIRGDDDGMEAVDREFMGKLEXERDAVAEGVKALEKEVAEREGRLEELRSGP 233

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293
           + +E +EKE+ VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENE
Sbjct: 234 SAKEVVEKERGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENE 293

Query: 294 EFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
           E KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEA
Sbjct: 294 ELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEA 353

Query: 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
           LS+ECNQA++RLKL   +QY LN+ GS+P EV+G+DYKS LKPAL+SFADD+ +SS+ KL
Sbjct: 354 LSIECNQALRRLKLGNGLQYVLNAKGSSPXEVLGIDYKSXLKPALDSFADDINKSSMSKL 413

Query: 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQ 456
           EELISLQQQS E AAKIE KR R+ ALQ   +EV A + +FL+
Sbjct: 414 EELISLQQQSVENAAKIEAKRNRLAALQSXSDEVEA-QLIFLK 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448101|ref|XP_002273942.1| PREDICTED: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/457 (57%), Positives = 346/457 (75%), Gaps = 14/457 (3%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SRDSDASFASSRPSS+G+ R+SA D  TDRS
Sbjct: 1   MKATGRRRPKDSIRPPPPPAPSVDHHRQFSRDSDASFASSRPSSLGINRSSAGDALTDRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFV 117
           +Q SAIR IN+ L+SHS  ++   PL   PS KDI++ +KFLISQLD+P TTK E+DL +
Sbjct: 61  YQLSAIRTINSFLASHSSPLSLKPPL---PSAKDISETLKFLISQLDFP-TTKLEDDLPI 116

Query: 118 VLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYM 177
           +LK L+CP K+NKS L++P +PH WP  L ++HWLVQIA YN HL +N + F   ++ ++
Sbjct: 117 LLKHLNCPIKLNKSALKAPGTPHAWPPLLGVMHWLVQIALYNDHLVSNLQCF---DNTFV 173

Query: 178 YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGP 233
           YA DSYL+YI G D  ++ +D+ F+ KLEKE++ V+E V+ L+K+V+E EG +    +GP
Sbjct: 174 YALDSYLHYIRGDDDGMEAVDREFMGKLEKERDAVAEGVKALEKEVAEREGRLEELRSGP 233

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE 293
           + +E +EK + VLEED+ KF+AII E + R   +EK++EEKE+E+G KVEE+ RICEENE
Sbjct: 234 SAKEVVEKVRGVLEEDVKKFHAIIAEFSGRIASVEKILEEKEKELGVKVEENNRICEENE 293

Query: 294 EFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEA 353
           E KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WDLD+ +G KFKELEA
Sbjct: 294 ELKKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEA 353

Query: 354 LSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKL 413
           LS+ECNQA++RLKL   +QY LN+ GS+P+EV+G+DYKS LKPAL+SFADD+ +SS+ KL
Sbjct: 354 LSIECNQALRRLKLGNGLQYVLNAKGSSPTEVLGIDYKSALKPALDSFADDINKSSMSKL 413

Query: 414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
           EELISLQQQS E AAKIE KR R+ ALQ   +EV A+
Sbjct: 414 EELISLQQQSVENAAKIEAKRNRLAALQSRSDEVEAQ 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486113|ref|XP_003633389.1| PREDICTED: LOW QUALITY PROTEIN: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/456 (54%), Positives = 340/456 (74%), Gaps = 12/456 (2%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RR P +S   P P     +     +R+SD SF +SRPSS+G+ R+SA+D +T+RS
Sbjct: 1   MKATGRRHPKDSIRPPPPPPPSVDHHSQFNRNSDTSFTNSRPSSLGINRSSASDAHTNRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAFPLKQ-VPSVKDITDVIKFLISQLDYPSTTKFEEDLFVV 118
           +Q SAIR IN  L+SHS     PLK   PS KDI++ +KFLISQLD+P TTK E+DL ++
Sbjct: 61  YQLSAIRTINFFLASHSS--PLPLKPPFPSAKDISETLKFLISQLDFP-TTKLEDDLPIL 117

Query: 119 LKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMY 178
           LK L+CP K+NKS L++P +PH WP+ L ++HWLVQIA YN HL +N + F   ++ ++Y
Sbjct: 118 LKHLNCPIKLNKSALKAPGTPHAWPSLLGVMHWLVQIALYNDHLVSNLECF---DNTFVY 174

Query: 179 ASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGPT 234
           A DSYL+YI G D  ++ +D+ F+ KLE+E++ V+E V+ L+K+V+  EG +    +GP+
Sbjct: 175 ALDSYLHYIRGDDDGMEAVDREFMGKLERERDAVAEGVKALEKEVAGREGRLEELRSGPS 234

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
            +E +EKE+ VLE+D+ KF+AII E   R   +EK+++EKE+E+G KVEE+ RICEENEE
Sbjct: 235 AKEVVEKERXVLEDDVKKFHAIIAEFXGRIASVEKILDEKEKELGVKVEENNRICEENEE 294

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            KK V+LQT NARD ERM+R+LQAVERDI +AE ARN WE K+WD+D+ +G KF+ELEAL
Sbjct: 295 LKKSVELQTFNARDAERMKRKLQAVERDITEAEVARNGWEEKSWDVDTTIGHKFEELEAL 354

Query: 355 SMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLE 414
           S+ECNQA++RLKL   +QY LN+NGS+ ++V+G+DYK TLKPAL+SFADD+ +SS+ KLE
Sbjct: 355 SIECNQALRRLKLGNGLQYVLNANGSSLAKVLGIDYKXTLKPALDSFADDINKSSMSKLE 414

Query: 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
           ELISLQQ S E A KIE KR R+ ALQ   +EV A+
Sbjct: 415 ELISLQQXSVENADKIETKRNRLAALQSSSDEVEAQ 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486104|ref|XP_003633386.1| PREDICTED: LOW QUALITY PROTEIN: kinetochore protein NDC80 homolog [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/426 (57%), Positives = 331/426 (77%), Gaps = 9/426 (2%)

Query: 29  SRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPS 88
           SR+SD SF+SSRPSS+G+ R+SA D  TDRS+Q SAIR IN+ L+SHS  +        +
Sbjct: 76  SRNSDPSFSSSRPSSLGINRSSAGDALTDRSYQLSAIRTINSFLASHSSPLPLKPPLPSA 135

Query: 89  VKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLAL 148
            +DI++ +KFLISQLD+P TTK E+DL ++LK L+CP K+NKS L++P +PH WP+ L +
Sbjct: 136 -EDISEXLKFLISQLDFP-TTKLEDDLPILLKHLNCPIKLNKSALKAPGTPHAWPSLLGV 193

Query: 149 IHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKE 208
           +HWLVQIA YN HL +N + F   ++ +++A DSYL+YI G D  ++ +D+ F+ KLE+E
Sbjct: 194 MHWLVQIALYNDHLVSNLECF---DNTFVHALDSYLHYIRGDDDGMEAVDREFMGKLERE 250

Query: 209 KENVSEYVEELKKKVSEMEGAM----TGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRK 264
           ++ V++ V+ L+K+V+E EG +    +GP+ +E +EKE+ VLEED+ KF+AII E + R 
Sbjct: 251 RDAVAKGVKALEKEVAEREGRLEELRSGPSAKEVVEKERGVLEEDVKKFHAIIAEFSGRI 310

Query: 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324
             +EK+++EKE+E+G KVEE+ RICEENEE KKRV+LQT NARD ERM+RELQAVERDI 
Sbjct: 311 ASVEKILDEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDIT 370

Query: 325 DAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSE 384
           +AE ARN WE K+WD+D+ +G KFKELEALS+ECNQA++RLKL   +QY LN+ GS P+E
Sbjct: 371 EAEVARNGWEEKSWDVDTTIGHKFKELEALSIECNQALRRLKLGNGLQYVLNAKGSLPAE 430

Query: 385 VMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444
           V+G+DYKSTLKPAL+SFADD+ + S+ KLEELISLQ+QS E AAKIE KR R+ ALQ   
Sbjct: 431 VLGIDYKSTLKPALDSFADDINKCSMLKLEELISLQEQSVENAAKIEAKRNRLAALQTSS 490

Query: 445 NEVSAK 450
           +EV A+
Sbjct: 491 DEVEAQ 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486098|ref|XP_003633385.1| PREDICTED: LOW QUALITY PROTEIN: kinetochore protein ndc80-like [Vitis vinifera]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 322/455 (70%), Gaps = 29/455 (6%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGG-SRDSDASFASSRPSSIGMGRASAADLYTDRS 59
           M+   RRRP +S   P P     +     SR+SDASFASS PSS+G+ R+SA D  T+RS
Sbjct: 1   MKATGRRRPKDSIHPPPPPPPSVDHHRQFSRNSDASFASSHPSSLGINRSSAGDALTNRS 60

Query: 60  HQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDLFVVL 119
           +Q SAIR IN+ L+SH                            D+P TTK E+DL ++L
Sbjct: 61  YQLSAIRTINSFLASHXXXXX--------------------XXXDFP-TTKLEDDLPILL 99

Query: 120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSMYMYA 179
           K L+CP K+NKS L++P +P  WP+ L ++HWL QIA YN HL +N + F   ++ ++YA
Sbjct: 100 KHLNCPIKLNKSALKAPGTPPVWPSLLGVMHWLAQIALYNDHLVSNLEYF---DNTFVYA 156

Query: 180 SDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAM----TGPTE 235
            DSYL+YI G D  ++ + + F+ KLE+E++ V++ V+ L+K+V+E EG +    +GP+ 
Sbjct: 157 LDSYLHYIRGDDDGMEAVGREFMGKLERERDAVAKGVKALEKEVAEREGRLEELRSGPSA 216

Query: 236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF 295
           +E +EKE+ VLEED+ KF+AII E + R   +EK+++EKE+E+G KVEE+ RICEENEE 
Sbjct: 217 KEVVEKERGVLEEDVKKFHAIIAEFSGRIASVEKILDEKEKELGVKVEENNRICEENEEL 276

Query: 296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS 355
           KKRV+LQT NARD ERM+RELQAVERDI +AE ARN WE K+WD+D+ +G KFKELEALS
Sbjct: 277 KKRVELQTFNARDAERMKRELQAVERDITEAEVARNGWEEKSWDVDTTIGHKFKELEALS 336

Query: 356 MECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEE 415
           +ECNQA+ RLKL   +QY LN+ GS P+EV+G+DYKSTLKPAL+SFADD+ + S+ KLEE
Sbjct: 337 IECNQALWRLKLGNGLQYVLNAKGSLPAEVLGIDYKSTLKPALDSFADDINKCSMLKLEE 396

Query: 416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
           LISLQ+QS E AAKIE K+ R+ ALQ   +EV A+
Sbjct: 397 LISLQEQSVENAAKIEAKKNRLAALQTSCDEVEAQ 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486118|ref|XP_003633391.1| PREDICTED: LOW QUALITY PROTEIN: probable kinetochore protein NDC80-like [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 248/425 (58%), Positives = 326/425 (76%), Gaps = 10/425 (2%)

Query: 29  SRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPS 88
           SR+SD+SFASSRPSS+G+ R+SA D+ T+RS Q SAIR IN+ L+SH          +PS
Sbjct: 30  SRNSDSSFASSRPSSLGINRSSAGDVLTNRSXQLSAIRTINSFLASH-VSPLPLKPPLPS 88

Query: 89  VKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLAL 148
            KDI++ +KFLISQLD+P TTK E+DL + LK L+   K+NKS L++P +PH WP+ L +
Sbjct: 89  AKDISETLKFLISQLDFP-TTKLEDDLRI-LKHLNFLIKLNKSALKAPGTPHAWPSXLGV 146

Query: 149 IHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKE 208
           +HWLVQIA YN HL +N + F   ++ ++YA DSYL+YI G D  ++ +D+ F+ KLE+E
Sbjct: 147 MHWLVQIALYNDHLVSNLQCF---DNTFVYALDSYLHYIRGDDDGMEAVDREFMGKLERE 203

Query: 209 KENVSEYVEELKKKVSEMEG----AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRK 264
           ++ V+E V+ L+K+V E EG     M+GP+ +  +EKE+ VLEED+ KF+AII E + R 
Sbjct: 204 RDAVAEGVKALEKEVVEREGRLEELMSGPSAKXVVEKERGVLEEDVKKFHAIIAEFSRRI 263

Query: 265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIA 324
             +EK++EEKE+E+G KVEE+ RICEENEE KKRV+LQT NARD ERM+RELQAVERDIA
Sbjct: 264 ASVEKILEEKEKELGVKVEENNRICEENEELKKRVELQTFNARDAERMKRELQAVERDIA 323

Query: 325 DAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSE 384
           +AE  RN WE K+WDLD+ +G KFKELEALS+ECNQA++RLKL   +QY LN+ GS+P+E
Sbjct: 324 EAEVVRNGWEEKSWDLDTTIGHKFKELEALSIECNQALRRLKLGNVLQYVLNAKGSSPAE 383

Query: 385 VMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI 444
           V+G+ +KSTLKPAL+SFADD+  SS+ KLEELISLQQQS E AAKIE KR  + ALQ   
Sbjct: 384 VLGIYHKSTLKPALDSFADDINISSMSKLEELISLQQQSVENAAKIEAKRNHLAALQSSS 443

Query: 445 NEVSA 449
           +EVSA
Sbjct: 444 DEVSA 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464508|ref|XP_004149971.1| PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/455 (52%), Positives = 324/455 (71%), Gaps = 15/455 (3%)

Query: 1   MRGKVRRRPTESALQPTPDLYGGNRFGGSRDSDASFASSRPSSIGMGRASAA--DLYTDR 58
           M+G  RRRP  S      +          RDSD SFASSRPSSIGM R S+A  D+Y +R
Sbjct: 1   MKGTARRRPKASF-----NPPPPPTPQFRRDSDVSFASSRPSSIGMSRPSSASIDMYKER 55

Query: 59  SHQSSAIRAINAHLS---SHSFHIAFPLKQVPSVKDITDVIKFLISQLDYPSTTKFEEDL 115
           + Q S +  IN+ L    SHSF++ F     PS+KD+T+ I  L+  LDYP  TK E+DL
Sbjct: 56  AVQISTVNTINSSLKELFSHSFNVTFKPFSPPSLKDLTETINLLLQCLDYP-PTKLEDDL 114

Query: 116 FVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVENNSM 175
            ++LKSL  PFKINK+ L++P +PH W   LAL+HWLVQ+A YNY+L  +S      + +
Sbjct: 115 PILLKSLGYPFKINKNILKNPPAPHQWYQILALLHWLVQVALYNYNLANDSNPIFTGHDV 174

Query: 176 YMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSE----YVEELKKKVSEMEGAMT 231
            +Y  +SYL+Y+ G D  V+ +D+ F+E+L+K +++  E      EE+K   +++E   +
Sbjct: 175 NIYVLNSYLHYMRGDDDSVEALDQEFMERLKKTRDDSRESLKELEEEVKVLEAKVEALRS 234

Query: 232 GPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEE 291
            P++RE LEK++ +LEED+ KF+ +I   + + ++M+KL+EEKE+E+  K+EE  +ICEE
Sbjct: 235 DPSQREVLEKQQSLLEEDVKKFHTMIAGYSEKMQEMKKLLEEKEKELDVKMEERNKICEE 294

Query: 292 NEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351
           NEE KKRV+ Q  N RDVERMRRELQAVERDI DAE +RN WE K+WDLD+ LG KFKEL
Sbjct: 295 NEELKKRVESQLFNPRDVERMRRELQAVERDIGDAEVSRNSWEEKSWDLDATLGNKFKEL 354

Query: 352 EALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVE 411
           EA++MECNQAM+RLKL +  QY LN+ GSTP++VMG+DYK+TLKPAL+SFA+D++RSS+ 
Sbjct: 355 EAIAMECNQAMRRLKLDSCHQYVLNAKGSTPADVMGIDYKTTLKPALDSFAEDIRRSSMM 414

Query: 412 KLEELISLQQQSSEMAAKIEGKRKRIDALQFHINE 446
           KLEELISL+QQSSE  AKIE KR  I +LQ H+NE
Sbjct: 415 KLEELISLRQQSSENTAKIESKRDHIASLQSHVNE 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2096996	568	AT3G54630 "AT3G54630" [Arabido	0.871	0.702	0.453	2.1e-91
UNIPROTKB|E1BF82	642	NDC80 "Uncharacterized protein	0.244	0.174	0.302	2.6e-13
UNIPROTKB|E2RIY7	642	NDC80 "Uncharacterized protein	0.244	0.174	0.294	7.3e-13
POMBASE|SPBC11C11.03	624	ndc80 "spindle pole body prote	0.847	0.621	0.200	7.1e-12
ZFIN|ZDB-GENE-030131-904	632	ndc80 "NDC80 homolog, kinetoch	0.338	0.245	0.286	8.6e-12
UNIPROTKB|Q8AWF5	638	ndc80 "Kinetochore protein NDC	0.371	0.266	0.238	5.7e-09
UNIPROTKB|Q5U4X5	640	ndc80 "Kinetochore protein NDC	0.371	0.265	0.233	7.7e-09
ASPGD|ASPL0000071619	738	ndc80 [Emericella nidulans (ta	0.355	0.220	0.228	5.7e-08
UNIPROTKB|G4NCT8	747	MGG_01027 "Kinetochore protein	0.364	0.223	0.242	6.8e-08
UNIPROTKB|Q4R630	642	NDC80 "Kinetochore protein NDC	0.355	0.253	0.267	2.3e-07

TAIR|locus:2096996 AT3G54630 "AT3G54630" [Arabidopsis thaliana (taxid:3702)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 187/412 (45%), Positives = 266/412 (64%)

Query:    44 IGMGRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDITDVIKFLISQL 103
             IG+G   A+D   DRS   S IR INA LS+H+F I+     VPSVKDI++ +KFL+S L
Sbjct:    50 IGLGGRGASD---DRS---SMIRFINAFLSTHNFPISIRGNPVPSVKDISETLKFLLSAL 103

Query:   104 DYP-STTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHL 162
             DYP  + K++EDL   LKS  CPFKI KS+L++PN+PHNWP  LA++HWL ++A ++ HL
Sbjct:   104 DYPCDSIKWDEDLVFFLKSQKCPFKITKSSLKAPNTPHNWPTVLAVVHWLAELARFHQHL 163

Query:   163 TTNSKAFVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKK 222
              +NS +  E+NSM  +A  S+ ++I G+D  V+++D  F+ KLE EK +V+E +   +K 
Sbjct:   164 VSNSTSVPEDNSMNFFAIQSFGHFIRGEDDKVNDLDSQFLGKLEAEKTSVAETISGCEKI 223

Query:   223 VSEMEGAMT----GPTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXI 278
               E+E  +     GP+                NKF  I+ E                  +
Sbjct:   224 SGELEAKLESLRKGPSKKESLEKVKADLENDVNKFRTIVVEYTDRNPAMEKVVEEKAKEL 283

Query:   279 GKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW 338
               K EE +RI  EN+E KK V+LQ  +A DV RMRRELQAVERD+ADAE AR+ W+ K W
Sbjct:   284 KAKEEERERISVENKELKKSVELQNFSAADVNRMRRELQAVERDVADAEVARDGWDQKAW 343

Query:   339 DLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPAL 398
             +L+S++  +F +++ L+++CNQA++RLKL  +IQ+++N  G TP+ VMGVDYKS +KPAL
Sbjct:   344 ELNSQIRNQFHQIQTLAIDCNQALRRLKL--DIQFAVNERGETPAAVMGVDYKSVVKPAL 401

Query:   399 ESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
              S  D +K SS EK+EEL++LQ   SEMA+KIE KR  + ++Q  IN++  K
Sbjct:   402 CSLCDGIKGSSAEKVEELVTLQHHKSEMASKIESKRSLLGSIQLQINDLEEK 453

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|E1BF82 NDC80 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
 Identities = 36/119 (30%), Positives = 60/119 (50%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
             D++     IR +   LS + +  +  +K  Q PSVKD   +  FL   L  PS     TK
Sbjct:    88 DKAFIQQCIRQLCEFLSENGYAYSVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 146

Query:   111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF 169
             FEE++  + + L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F
Sbjct:   147 FEEEVPRIFRDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKLHNAMKESSPLF 205

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

UNIPROTKB|E2RIY7 NDC80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 144 (55.7 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
 Identities = 35/119 (29%), Positives = 60/119 (50%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
             D++     IR +   L+ + +  +  +K  Q PSVKD   +  FL   L  PS     TK
Sbjct:    88 DKAFIQQCIRQLCEFLTENGYAYSVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 146

Query:   111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF 169
             FEE++  + + L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F
Sbjct:   147 FEEEVPRIFRDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKLHNAMKESSPLF 205

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IEA

GO:0000942 "condensed nuclear chromosome outer kinetochore" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

POMBASE|SPBC11C11.03 ndc80 "spindle pole body protein Ndc80" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 191 (72.3 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 83/413 (20%), Positives = 179/413 (43%)

Query:    58 RSHQSSAIRAINAHLSS-HSFHIAFPLKQVPSVKDITDVIKFLISQLD--YPSTTKFEED 114
             R  Q  A + +N  L S  S  +    + +PS ++   + K L ++LD  +    ++EED
Sbjct:   104 RYQQECATQVVNYLLESGFSQPLGLNNRFMPSTREFAAIFKHLYNKLDPNFRFGARYEED 163

Query:   115 LFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQIASYN-------YHLTTN 165
             +   LK+L+ PF   I++S L +  SPH WPA L ++HW+V +           Y +  N
Sbjct:   164 VTTCLKALNYPFLDSISRSRLVAIGSPHVWPAILGMLHWVVSLIQCTEKAVAMVYTVEQN 223

Query:   166 S-KAFVENNSMYMYASDSYLNYIEG--KDGDVDNIDKGFIEKLEKEKENVSEYVEELKKK 222
             S    + +  ++ Y   +Y  Y++   ++ + +   K    +  ++  N +E ++   ++
Sbjct:   224 SLDDHLVDKVLFDYLVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALKSTNEE 283

Query:   223 -VSEMEGAMTGPTXXXXXXXXXXXXXXXXNKFNAIIGELNXXXXXXXXXXXXXXXXIGKK 281
              +++++ A    +                 KF + +  +                 I +K
Sbjct:   284 LINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEEK 343

Query:   282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLD 341
               + + + E+ +  K +V+ Q I+  + E+M  E + ++R++    +  +E   + +D D
Sbjct:   344 ESQLQLLKEKRDSLKYQVENQDISISEFEKMVSEREQLDRNLNMIGSKISELRKEVFDTD 403

Query:   342 SKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVM--GVDYKST-LKPAL 398
               +      LE    + N    R+ +   I    ++N     E+   G +Y +  LK  +
Sbjct:   404 LLIQASIDSLEKKVQKFNSLAYRIGIVP-IAAIRSANNDFELEINPEGPNYINLDLKNKV 462

Query:   399 ESFADDVKRS-SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
               F ++V+RS ++E  EE    Q +S ++   ++     I  LQ  +  + ++
Sbjct:   463 RPFINEVRRSITLEFHEE----QNKSLKLQEHVDTVNDLIAELQDELRGIESR 511

GO:0000070 "mitotic sister chromatid segregation" evidence=IC

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008608 "attachment of spindle microtubules to kinetochore" evidence=IDA

GO:0031262 "Ndc80 complex" evidence=TAS

GO:0031617 "NMS complex" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IDA

GO:0071444 "cellular response to pheromone" evidence=IMP

ZFIN|ZDB-GENE-030131-904 ndc80 "NDC80 homolog, kinetochore complex component (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
 Identities = 51/178 (28%), Positives = 81/178 (45%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
             D++     I+ +   L    F  +  +K  Q PS K+   + +F+ + L+ PS    T K
Sbjct:    86 DKAFVQQCIKQLYEFLVDRGFPGSITVKALQSPSTKEFLKIYEFIYNFLE-PSFQMPTAK 144

Query:   111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
              EE++  +LK L  PF ++KS++ S  +PH WP  L  + WL+               F 
Sbjct:   145 VEEEIPRMLKDLGYPFALSKSSMYSIGAPHTWPLALGALIWLMDAVKLFGGQREQDLLFS 204

Query:   170 ------------VENNSMYM-YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSE 214
                          E N + M Y SD+Y  +++G D   D+ D  F+ KL+K   NV E
Sbjct:   205 DFSDELCDLEDRTEYNKLIMEYCSDTYNKFMQGAD-TFDDEDDDFLYKLKK-LYNVDE 260

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0000776 "kinetochore" evidence=IEA;ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q8AWF5 ndc80 "Kinetochore protein NDC80 homolog" [Xenopus laevis (taxid:8355)]

 Score = 147 (56.8 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 46/193 (23%), Positives = 92/193 (47%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQL--DYPST-TKF 111
             D++     IR +   L+ + +  A  +K  Q PS KD   +  F+ + +  +Y +  +KF
Sbjct:    87 DKAFIQQCIRQLCEFLNENGYSQALTVKSLQGPSTKDFLKIFAFIYTFICPNYENPESKF 146

Query:   112 EEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFV- 170
             EE++  + K L  PF ++KS++ +  +PH WP  +A + WL+        L + +  F  
Sbjct:   147 EEEIPRIFKELGYPFALSKSSMYTVGAPHTWPQIVAALVWLIDCVKLCCVLRSENPVFED 206

Query:   171 -------EN----NSMYM-YASDSYLNYIEGKDGDVDNIDKGFIEKLEK----EKENVSE 214
                    EN    N +++ Y    Y  ++EG+D   +  D     +L++    ++ N+  
Sbjct:   207 PPMGEQSENGIDFNQLFLDYTVRCYDQFMEGRD-TFEEYDTDVCIRLKEAYHVDESNLEA 265

Query:   215 YVEELKKKVSEME 227
               +E ++ + E+E
Sbjct:   266 LQQESRRLMEEIE 278

GO:0000776 "kinetochore" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

UNIPROTKB|Q5U4X5 ndc80 "Kinetochore protein NDC80 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 144 (55.7 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
 Identities = 45/193 (23%), Positives = 91/193 (47%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQL--DYPST-TKF 111
             D++     IR +   L+ + +     +K  Q PS KD   +  F+ + +  +Y +  +KF
Sbjct:    87 DKAFIQQCIRQLCEFLNENGYSQTLTVKSLQGPSTKDFLKIFAFIYTFICPNYENPESKF 146

Query:   112 EEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFVE 171
             EE++  + K L  PF ++KS++ +  +PH WP  +A + WL+        L + +  F E
Sbjct:   147 EEEIPRIFKELGYPFALSKSSMYTVGAPHTWPQIVAALVWLIDCVKLCCVLRSENPVFEE 206

Query:   172 --------N----NSMYM-YASDSYLNYIEGKDGDVDNIDKGFIEKLEK----EKENVSE 214
                     N    N +++ Y    Y  ++EG+D   +  D     +L++    ++ N+  
Sbjct:   207 PQMGEQSENGIDFNQLFLDYTVRCYDQFMEGRD-TFEEYDADMCIRLKEAYHVDESNLEA 265

Query:   215 YVEELKKKVSEME 227
               +E ++ + E+E
Sbjct:   266 LQQESRRLLEEIE 278

GO:0000776 "kinetochore" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

ASPGD|ASPL0000071619 ndc80 [Emericella nidulans (taxid:162425)]

 Score = 117 (46.2 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
 Identities = 43/188 (22%), Positives = 93/188 (49%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFP--LKQ----VPSVKDITDVIKFLISQLD--YPST 108
             DRS Q+   + +  +L+ ++F +     L Q     P+ KD   + ++L  ++D  Y   
Sbjct:   158 DRSFQARIAQELLEYLTHNNFELEMKHSLGQNTLRSPTQKDFNYIFQWLYHRIDPGYRFQ 217

Query:   109 TKFEEDLFVVLKSLSCPFK--INKSTLRSPNSPHNWPAYLALIHWLVQIASY--NYHLTT 164
                + ++  +LK L  P++  I KS + +     NWP +L ++HWL+++A     + +  
Sbjct:   218 KAMDAEVPPILKQLRYPYEKGITKSQIAAVGG-QNWPTFLGMLHWLMELAQMMDRFAMGE 276

Query:   165 NSKAFVE-------NNSMYMYASDSYLNYIEG-KDGDVDNIDKGFIEKLE---KEKENVS 213
               +A  E       +  ++ + + +Y ++++G ++ D D   +  I  +E   +E E  +
Sbjct:   277 YDEACAEMGVDVSGDRIIFRFLTGAYHDWLQGGEEEDDDAAAQRLIPHIELMAQEFEKGN 336

Query:   214 E-YVEELK 220
             E YV+E++
Sbjct:   337 EKYVQEMQ 344

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0071444 "cellular response to pheromone" evidence=IEA

GO:0034501 "protein localization to kinetochore" evidence=IEA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0031617 "NMS complex" evidence=IEA

GO:0031262 "Ndc80 complex" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

UNIPROTKB|G4NCT8 MGG_01027 "Kinetochore protein ndc-80" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 126 (49.4 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
 Identities = 47/194 (24%), Positives = 95/194 (48%)

Query:    57 DRSHQSSAIRAINAHLSSHSFHIAFP--LKQ----VPSVKDITDVIKFLISQLD--YPST 108
             DRS+Q+   + +  +L+ H+F +     L Q     P+ KD   + ++L +++D  Y   
Sbjct:   160 DRSYQNRIGQELLDYLTQHNFELDMNHNLSQNVIKSPTQKDFNYIFQWLYNRIDPSYKFM 219

Query:   109 TKFEEDLFVVLKSLSCPFK--INKSTLRSPNSPHNWPAYLALIHWLVQIASY--NYHLTT 164
                ++++  +LK L  P++  I KS + +     NW  +L ++HW++Q+A     + L  
Sbjct:   220 KNIDQEVPPLLKQLRYPYEKGITKSQIAAVGG-QNWSTFLGMLHWMMQLAQMIEGFALNR 278

Query:   165 NSKAFVE-------NNSMYMYASDSYLNYIEGKDGDV-----DNIDKGFIEKLEKEKENV 212
              + A +E       ++  + + S +Y  ++ G D  V     D + K  IE++E   E  
Sbjct:   279 YADACLEAGVDTVGDHITFDFLSAAYAEWL-GMDDSVSEEEADRLLKPHIEEMEAAFEQA 337

Query:   213 S-EYVEELKKKVSE 225
             + ++ EEL+   +E
Sbjct:   338 NAKHFEELRMLEAE 351

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q4R630 NDC80 "Kinetochore protein NDC80 homolog" [Macaca fascicularis (taxid:9541)]

 Score = 152 (58.6 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 50/187 (26%), Positives = 88/187 (47%)

Query:    57 DRSHQSSAIRAINAHLSSHSF-H-IAFPLKQVPSVKDITDVIKFLISQLDYPS----TTK 110
             D++     IR +   L+ + + H ++    Q PSVKD   +  FL   L  PS     TK
Sbjct:    88 DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 146

Query:   111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
             FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct:   147 FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFD 206

Query:   170 ------------VENNSMYM-YASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEY- 215
                         + +N +++ Y    Y +++ G D   D ++     KL K+  NV  + 
Sbjct:   207 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADS-FDEMNAELQSKL-KDLFNVDAFK 264

Query:   216 VEELKKK 222
             +E L+ K
Sbjct:   265 LESLEAK 271

GO:0000776 "kinetochore" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031262 "Ndc80 complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
pfam03801	159	pfam03801, Ndc80_HEC, HEC/Ndc80p family	4e-31
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	2e-22
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	8e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002

>gnl|CDD|217738 pfam03801, Ndc80_HEC, HEC/Ndc80p family

 Score =  116 bits (293), Expect = 4e-31
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 28  GSRDSDASFASSRPSSIGM-GRASAADLYTDRSHQSSAIRAINAHLSSHSFHIAFPLK-- 84
           GSR S AS +SS+PSS+    R        D++ QS  I+ I   L  + F I    K  
Sbjct: 10  GSRTSLASSSSSQPSSVPRDPRPL-----RDKAFQSQCIQEIYEFLVENGFEIEISPKTL 64

Query: 85  QVPSVKDITDVIKFLISQLD--YPSTTKFEEDLFVVLKSLSCPF-KINKSTLRSPNSPHN 141
           + P+ KD  ++ KFL ++LD  Y    K EE++  +LK L  P+  I KS L +   PH 
Sbjct: 65  KSPTQKDFIEIFKFLYNRLDPSYKFGKKIEEEVPSILKDLGYPYLTITKSQLSAVGGPHT 124

Query: 142 WPAYLALIHWLVQIASYNYHLTTNSKAFVENNSM 175
           WP +L  +HWLV++  Y   L  +        + 
Sbjct: 125 WPTFLGALHWLVELIKYLEALLNHDYDEACEGNE 158

Members of this family are components of the mitotic spindle. It has been shown that Ndc80/HEC from yeast is part of a complex called the Ndc80p complex. This complex is thought to bind to the microtubules of the spindle. Length = 159

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score =  100 bits (249), Expect = 2e-22
 Identities = 85/420 (20%), Positives = 182/420 (43%), Gaps = 31/420 (7%)

Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLD--YPSTTKFE 112
           D+++Q +    I  +L  + F I   +K  + PS K    + K+L  +LD  +  T + E
Sbjct: 102 DKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIE 161

Query: 113 EDLFVVLKSLSCPF--KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFV 170
            +++ +LK+L  PF   INKS L S   PHNWP  L ++HW+V++           K   
Sbjct: 162 NEVYQILKNLRYPFLESINKSQL-SAIGPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLD 220

Query: 171 ENNS--------MYMYASDSYLNYIEGKDGD---VDNIDKGFIEK---LEKEKENVSEYV 216
           + +         ++ Y ++SY ++++ +D        +  GF +    +  +  N+    
Sbjct: 221 QQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQN 280

Query: 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276
           + L +K+ E   AM    + + L ++   L+ D NK+   +  +  + ++    +E+ + 
Sbjct: 281 DNLYEKIQE---AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKS 337

Query: 277 EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336
           EI  K EE K +    +E  K+++ Q I+    E M +E + + R++       ++    
Sbjct: 338 EIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397

Query: 337 TWDLDSKLGRKFKELEALSMECNQAMKRLKLATEI------QYSLNSNGSTPSEVMGVDY 390
                 +    FK LE    + +  ++ +  +           SL  N        G   
Sbjct: 398 VKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPK-GSGI 456

Query: 391 KSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK 450
             ++K ++    D+++     +  + I+L++    +   I    + ++ L+  ++E ++K
Sbjct: 457 NESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSK 516

Length = 622

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 17/248 (6%)

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAM------TGPTEREKLEKEKCVLEEDLNKFNAI 256
           E+L +E+E    Y + L K+  E EG            ++E +E++   LEE+L K    
Sbjct: 201 ERLRREREKAERY-QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259

Query: 257 IGELNMRKEKMEKLVEEKEREIGKKVE-EHKRICEENEEFK-KRVKLQTINARDVERMRR 314
           I EL  R E++E+L+EE  ++I    E E  R+ E+  E + +   L+    R +    R
Sbjct: 260 ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE----RSIAEKER 315

Query: 315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL-KLATEIQY 373
           EL+  E  +A  E   ++  ++  +L+ ++  + K  + L+ E  +  + L  L  E++ 
Sbjct: 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375

Query: 374 SLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK 433
                  T  E+   DY+  L+  L+   +++KR      EEL  L ++ +++ A I G 
Sbjct: 376 VDKEFAETRDELK--DYREKLE-KLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432

Query: 434 RKRIDALQ 441
             +I+ L+
Sbjct: 433 EAKINELE 440

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 47/237 (19%), Positives = 105/237 (44%), Gaps = 20/237 (8%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           IE+LE E   + E +EEL+ ++ E+E         E+L+++   L+E+L +   ++ EL 
Sbjct: 297 IEELEGEISLLRERLEELENELEELEE------RLEELKEKIEALKEELEERETLLEELE 350

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHK-RICEENEEFKKRVKLQTINARDVERMRRELQAVE 320
               ++E+  EE E ++   +EE +       EE  +          ++E ++RE++++E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 321 RDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGS 380
             +        + + +  +L+++L     ELE L+ E  +  ++L+   +    L     
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE-- 468

Query: 381 TPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRI 437
                      + L+  L+    ++      +L+ L + Q+ S  + A +E     +
Sbjct: 469 ----------LAELQEELQRLEKELSSLE-ARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 56/254 (22%), Positives = 114/254 (44%), Gaps = 25/254 (9%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           +EKLE++ E    Y +ELK ++ E+E A+    + ++L KE   LEE+L++    +    
Sbjct: 202 LEKLERQAEKAERY-QELKAELRELELALLL-AKLKELRKELEELEEELSRLEEEL---- 255

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE----RMRRELQ 317
              E++++ +EE E+EI +   E + + EE EE ++ +        ++E     +R  L+
Sbjct: 256 ---EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLE 312

Query: 318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNS 377
            +E ++ + E    E + K   L  +L  +   LE L     +  +  +   E   +L  
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372

Query: 378 NGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRI 437
                           L  AL     +++    E   EL  L+++   +  ++E   +R+
Sbjct: 373 E------------LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 438 DALQFHINEVSAKK 451
           + L+  + E+ A+ 
Sbjct: 421 EDLKEELKELEAEL 434

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 49/250 (19%), Positives = 105/250 (42%), Gaps = 23/250 (9%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTER-EKLEKEKCVLEEDLNKFNAIIGEL 260
           +E L++E  ++   +  ++ ++ E+   ++  + +  ++EKE   LE++  K    + EL
Sbjct: 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742

Query: 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK-RVKLQTINARDVERMRRELQAV 319
              +E +  L +E E    +  E   RI E  E+  K    L  + AR       E+QA 
Sbjct: 743 ---EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 320 ERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNG 379
              +   E   +  E++  +++ KL R   E E L  E  Q ++  ++  + Q  + S  
Sbjct: 800 LSKL---EEEVSRIEARLREIEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQ--IKSIE 853

Query: 380 STPSEVMGVDYKSTLKPALESFADDVKRSSVEKLE---ELISLQQQSSEMAAKIEGKRKR 436
                         L    E   ++++       +    L  L+++  E+ A++    ++
Sbjct: 854 KEIEN---------LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904

Query: 437 IDALQFHINE 446
           I+ L+  I +
Sbjct: 905 IEELEAQIEK 914

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 50/266 (18%), Positives = 120/266 (45%), Gaps = 27/266 (10%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTE-REKLEKEKCVLEEDLNKFNAIIGEL 260
            +E+L++  E + E +E L++ +++++  +    E R+ L++E   LEE+L +    +  L
Sbjct: 753  LEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812

Query: 261  NMRKEKMEKLVEEKEREI---GKKVEEHKRICEENEEFKKRVKLQTINAR-DVERMRREL 316
                E +E+  E  E+EI    +++EE +   +E EE  + ++ +    + ++E +  E 
Sbjct: 813  ERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872

Query: 317  QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLN 376
            + +E ++ + E  + E           L  + +ELE+   E  + +++L+   E   +  
Sbjct: 873  EELEDELKELEEEKEE-----------LEEELRELESELAELKEEIEKLRERLEELEAKL 921

Query: 377  SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEEL-------ISLQQQSSEMAAK 429
                     +  + +   +  LE+  +       E++E L       I   ++  E   +
Sbjct: 922  ERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEE 981

Query: 430  IEGKRKRIDA----LQFHINEVSAKK 451
            ++ +R+ ++     L   I E+  +K
Sbjct: 982  LKSQREDLEEAKEKLLEVIEELDKEK 1007

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 48/247 (19%), Positives = 99/247 (40%), Gaps = 36/247 (14%)

Query: 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK------- 269
           EEL++++ E E       E E+L  E   LEE L +    + EL    E+++K       
Sbjct: 242 EELQEELKEAE------EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295

Query: 270 LVEEKEREIGKKVEEHKRICEENEE--------FKKRVKLQTINARDVERMRRELQAVER 321
            +   E++     E    +  + EE          K  +L      ++  +  +L+ ++ 
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE----ELAELEEKLEELKE 351

Query: 322 DIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT-EIQY------S 374
           ++   E    E E++  +L+S+L    ++LE L  +  Q   ++     EI+        
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 375 LNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKR 434
           L        +    + +  LK   E+   +++    E  EEL  LQ++   +   +E  R
Sbjct: 412 LEDRRERLQQ----EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467

Query: 435 KRIDALQ 441
           + ++  +
Sbjct: 468 EELEEAE 474

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 44/245 (17%), Positives = 100/245 (40%), Gaps = 14/245 (5%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMT-GPTEREKLEKEKCVLEEDLNKFNAIIGEL 260
           IE+LE++ E + E + EL+K ++E+   +     E E+L KE   L   ++     +  L
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 261 NMRKEKMEKLVEEKEREIG----KKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL 316
               E++E+ + +  +E+     +  E  +R+ E  EE  +           +E+++ EL
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLN 376
           +A+   + +          +  +L  +L    + + A         ++++  +E   SL 
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 377 SNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKR 436
           +          ++    L   LES  + +        E L  L+ +  E++ ++     +
Sbjct: 859 AE---------IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909

Query: 437 IDALQ 441
              L+
Sbjct: 910 RSELR 914

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 26/227 (11%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           +E+ E+E       +EEL+ ++ +++  +     RE L++    L  +L   N     L 
Sbjct: 770 LEEAEEELAEAEAEIEELEAQIEQLKEELK--ALREALDE----LRAELTLLNEEAANLR 823

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER---------- 311
            R E +E+ +   ER +    E+ + + E+ E     ++       ++E           
Sbjct: 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883

Query: 312 -MRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATE 370
            +   L  +  ++ +      E ESK  +L  +L    ++L  L +       R+     
Sbjct: 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID---N 940

Query: 371 IQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELI 417
           +Q  L+   S   E         L+  +E   ++ +R  +++LE  I
Sbjct: 941 LQERLSEEYSLTLEEAE-----ALENKIEDDEEEARR-RLKRLENKI 981

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 25/168 (14%)

Query: 195 DNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPT-EREKLEKEKCVLEEDL--- 250
             +    I +++ E   + E V  ++ ++ E+E  +   T E+E LEKE   L+E     
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 251 ----NKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306
                     I  LN +KE++E+ +EE E  +         +                  
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL-----------------K 888

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
           ++ + +  +L+ +ER I + E    +   +  +L +KL    +EL  +
Sbjct: 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
           E  +LE +   LEE+L      +  L    E++ + +EE ER++ +   E   + EE E+
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ 734

Query: 295 FKKRVKLQTINARDVERMRRELQA----VERDIADAENARNEWESKTWDLDSKLGRKFKE 350
            + R++       ++E    ELQ     +E ++   E A  + + +  +L+ K     +E
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEE 794

Query: 351 LEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSV 410
           LE L  E  +A +RL     ++  L S      E      +  ++  LE   ++++    
Sbjct: 795 LEELEEELEEAERRL---DALERELESL-----EQRRERLEQEIE-ELEEEIEELEEKLD 845

Query: 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451
           E  EEL  L+++  E+  ++E      + L+  + E+  +K
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 37/155 (23%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 181 DSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLE 240
           +  L  +E    +++      +E+LE+  E + E + EL+ +++E+        E E+L+
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN------ELEELK 403

Query: 241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK 300
           +E   LEE L + +  + +L    +++E  +EE + E+ +  EE + + E+ EE + R+K
Sbjct: 404 REIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463

Query: 301 LQTINARDVERMRRELQAVERDIADAENARNEWES 335
                 R++  ++ ELQ +E++++  E   +  E+
Sbjct: 464 ELE---RELAELQEELQRLEKELSSLEARLDRLEA 495

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           +E LE++ E +SE +E L  ++ E+E         E+LE E   L  +       +  L 
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELE------ELIEELESELEALLNERASLEEALALLR 893

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR-----VKLQTINARDVERMRREL 316
              E++ + + E E +  +   E + + E+  + + R     V++  +  R  E     L
Sbjct: 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953

Query: 317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351
           +  E      E+   E   +      +L  K KEL
Sbjct: 954 EEAEALENKIEDDEEEARRRL----KRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 23/250 (9%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREK--------LEKEKCVLEEDL--N 251
            E+ E++ E   E +E L+  + E+E  +    ER+         L+ E   LE  L   
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLE-KLERQAEKAERYQELKAELRELELALLLA 232

Query: 252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER 311
           K   +  EL   +E++ +L EE E    +  E  K I E   E ++  +       ++  
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEI 371
           ++ E++ +E +I+       E E++  +L+ +L    +++EAL     +  +R  L  E+
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK---EELEERETLLEEL 349

Query: 372 QYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIE 431
           +  L        E         L+  L +  ++++       EEL  L+ + +E+  ++E
Sbjct: 350 EQLLAELEEAKEE---------LEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 432 GKRKRIDALQ 441
             ++ I++L+
Sbjct: 401 ELKREIESLE 410

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 43/221 (19%)

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
           ++EK  +E   +EE++ + + II E     +++E+L  E+E     K E ++ + +E  E
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKR---QQLERLRRERE-----KAERYQALLKEKRE 222

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
           ++          ++ E + R+ +A+ER +A  E    +                +E+  L
Sbjct: 223 YE-----GYELLKEKEALERQKEAIERQLASLEEELEKLT--------------EEISEL 263

Query: 355 SMECNQAMKRLK-LATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDV---KRSSV 410
                +  + L+ L  +I            + +G + +  +K  +     ++   +RS  
Sbjct: 264 EKRLEEIEQLLEELNKKI------------KDLGEEEQLRVKEKIGELEAEIASLERSIA 311

Query: 411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451
           EK  EL   +++ +++ A+I+     I+ L+  I E   ++
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 39/195 (20%), Positives = 80/195 (41%), Gaps = 15/195 (7%)

Query: 247 EEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA 306
            E+L++   I+ EL  + + +E+  E        K E +K +  E  E +  +       
Sbjct: 185 RENLDRLEDILNELERQLKSLERQAE--------KAERYKELKAELRELELALL-----V 231

Query: 307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK 366
             +E +R EL+ ++ ++ +AE    E  ++  +L+ KL     E+  L  E  +  K L 
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 367 LATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM 426
                   L        E +           LE+  ++++    E  EEL  L+++  E+
Sbjct: 292 ALANEISRLEQQKQILRERL--ANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349

Query: 427 AAKIEGKRKRIDALQ 441
             ++E     ++ L+
Sbjct: 350 KEELESLEAELEELE 364

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 44/261 (16%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAI----- 256
           I++ EKE E V   + E+  ++ E+        E EKLEKE   LEE   +   +     
Sbjct: 195 IKEKEKELEEVLREINEISSELPELRE------ELEKLEKEVKELEELKEEIEELEKELE 248

Query: 257 -----IGELNMRKEKMEKLVEEKE---REIGKKVEEHKRICEENEEFKK--------RVK 300
                  +L  +  ++E+ +EE +    E+ +KV+E K + E+ EE+ K          +
Sbjct: 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308

Query: 301 LQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQ 360
           L+ I  R + R+  E+  +E  I + E      E +      +L ++ +ELE       +
Sbjct: 309 LREIEKR-LSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYEE 366

Query: 361 AMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQ 420
           A  + +    ++  L   G TP +             LE   ++++++  E  EE+  + 
Sbjct: 367 AKAKKEELERLKKRL--TGLTPEK-------------LEKELEELEKAKEEIEEEISKIT 411

Query: 421 QQSSEMAAKIEGKRKRIDALQ 441
            +  E+  +I+  +K I+ L+
Sbjct: 412 ARIGELKKEIKELKKAIEELK 432

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 19/179 (10%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEK---EKCVLEEDLNKFNAIIG 258
           ++++EKE + + E   +L+K++ E+E  +   +E  KL++   +   LEE L K+N  + 
Sbjct: 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN--LE 518

Query: 259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL-- 316
           EL  + E+ EKL +EK  ++  +++  K+  E+ EE KK++        ++E    EL  
Sbjct: 519 ELEKKAEEYEKL-KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577

Query: 317 ----------QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL 365
                     + +E  + + E   NE+     D + +L R+ KEL+ L  E ++A + L
Sbjct: 578 ELEELGFESVEELEERLKELEPFYNEYLELK-DAEKELEREEKELKKLEEELDKAFEEL 635

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 26/132 (19%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR 263
           ++EK    + E +  +++++ E+E         E+L+K+   LE+ L +           
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELE---EKEERLEELKKKLKELEKRLEELEERHELYEEA 367

Query: 264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI 323
           K K E+L   K+R  G   E+ ++  EE E+ K+ ++       ++ ++   +  ++++I
Sbjct: 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE------EEISKITARIGELKKEI 421

Query: 324 ADAENARNEWES 335
            + + A  E + 
Sbjct: 422 KELKKAIEELKK 433

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 48/232 (20%), Positives = 102/232 (43%), Gaps = 18/232 (7%)

Query: 234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER--EIGKKVEEHKRICEE 291
             +E+ E++    EE+L +   ++ EL  + EK+E+  E+ ER  E+  ++ E +     
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL 231

Query: 292 NEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKEL 351
            +  + R +L+ +   ++ R+  EL+ ++ ++ +AE    E +S+  +L  +L    +EL
Sbjct: 232 AKLKELRKELEELE-EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 352 EALSMECNQAMKRLKLATEIQYSLNSNGSTPSEV------------MGVDYKSTLKPALE 399
             L  E  +    + L  E    L +      E               ++ + TL   LE
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 400 SFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451
               +++  + E+LEE +S   +  E     E  R+ +  L+  + E+  + 
Sbjct: 351 QLLAELEE-AKEELEEKLSALLEELE--ELFEALREELAELEAELAEIRNEL 399

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 57/250 (22%), Positives = 104/250 (41%), Gaps = 21/250 (8%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           ++ LE++ E    Y +ELK ++ E+E A+      E+L +E   L+E+L +    + EL 
Sbjct: 202 LKSLERQAEKAERY-KELKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELT 259

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321
              +++E+ +EE   E+ +     + I E  +E        +   +  + +R  L  +ER
Sbjct: 260 AELQELEEKLEELRLEVSEL---EEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

Query: 322 DIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGST 381
            + + E    E ESK  +L  +L    ++LE L  E       L+        L S    
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR--- 373

Query: 382 PSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ 441
                       L+  LE+    V     +   ++ SL  +   + A++E    R + LQ
Sbjct: 374 ---------LEELEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQ 420

Query: 442 FHINEVSAKK 451
             I E+  K 
Sbjct: 421 QEIEELLKKL 430

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 51/248 (20%), Positives = 112/248 (45%), Gaps = 25/248 (10%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           +E  E  KE + E +E+L+  + E+E        +EKL+ ++  L+E+L +    + EL 
Sbjct: 521 LELEEALKEELEEKLEKLENLLEELE------ELKEKLQLQQ--LKEELRQLEDRLQELK 572

Query: 262 MRKEKMEKL--VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAV 319
              E++  L   +E+  E+ ++++E K+  +E EE   +++ + + + ++     EL+  
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLE-ELLQSLELSEAENELEEA 631

Query: 320 ERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNG 379
           E ++       N        L+  L    +ELE          K  +L  EI+  L    
Sbjct: 632 EEELESELEKLNLQAE----LEELLQAALEELEE---------KVEELEAEIRRELQRIE 678

Query: 380 STPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDA 439
           +       ++    L+  LE   ++++    +KL E+  L ++     A++E  +K ++ 
Sbjct: 679 NEEQLEEKLEELEQLEEELEQLREELEELL-KKLGEIEQLIEELESRKAELEELKKELEK 737

Query: 440 LQFHINEV 447
           L+  +  +
Sbjct: 738 LEKALELL 745

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 46/260 (17%), Positives = 105/260 (40%), Gaps = 29/260 (11%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
           +  LE+E E ++E + EL+K++ E+E  +      +K++      EE+  +    IGEL 
Sbjct: 246 LASLEEELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLG---EEEQLRVKEKIGELE 300

Query: 262 MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVER 321
                +E+ + EKERE+    E   ++  E ++    +       R++E  R+    +  
Sbjct: 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI---EELEREIEEERKRRDKLTE 357

Query: 322 DIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGST 381
           + A+ +    +  ++  ++D +      EL+          ++L+        L      
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELK-------DYREKLEKLKREINELKRELDR 410

Query: 382 PSEVM------GVDYKSTLK------PALESFADDVKRSSVEKLE-ELISLQQQSSEMAA 428
             E +        D  + +         LE   +D K   ++K E +L  L    S+   
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKED-KALEIKKQEWKLEQLAADLSKYEQ 469

Query: 429 KIEGKRKRIDALQFHINEVS 448
           ++   ++  D ++  ++++ 
Sbjct: 470 ELYDLKEEYDRVEKELSKLQ 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 45/239 (18%), Positives = 95/239 (39%), Gaps = 18/239 (7%)

Query: 205 LEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKC--------VLEEDLNKFNAI 256
           L K+   +   V +++ ++ ++E A+   TE+ +  +E+          +  + N   A 
Sbjct: 155 LMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQ 214

Query: 257 IGELNMRKEKME-------KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV 309
             E   R  ++E       +  +E +R +    +    +     E K+R+K  TI  RD 
Sbjct: 215 RAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDE 274

Query: 310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT 369
           E  R +LQ     + +      E    +      LG +   L +L       + + +L +
Sbjct: 275 ETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELHQSRLES 334

Query: 370 -EIQYSLNSNGSTPSEVMGV--DYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSE 425
            ++   L+       E        + TL+ + E+  D +++ S E L+    LQ++ S+
Sbjct: 335 AQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQ 393

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGE-- 259
           +E+LE E E++ E VEE+++++   E  +      E+LE+ +  LEE + +    I E  
Sbjct: 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR 536

Query: 260 -----LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314
                L  R  ++E   EEK     +  EE +   EE  E     KL  +  R       
Sbjct: 537 ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS--KLAELKER-----IE 589

Query: 315 ELQAVERDIADAENARNEWES 335
            L+ +   +A   +A +E E 
Sbjct: 590 SLERIRTLLAAIADAEDEIER 610

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 42/217 (19%), Positives = 88/217 (40%), Gaps = 12/217 (5%)

Query: 235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE 294
           E E+LE++   LEE +        EL     ++ K +EE E E+ +  +E + +  +   
Sbjct: 678 EIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEELSRQISA 730

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            +K +         +E    +L    +++ + E    E E +  + + +L     E+E L
Sbjct: 731 LRKDLARLEAEVEQLEERIAQLS---KELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787

Query: 355 SMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLE 414
             +  Q  + LK   E    L +  +  +E            +LE      +R   +  E
Sbjct: 788 EAQIEQLKEELKALREALDELRAELTLLNE--EAANLRERLESLERRIAATERRLEDLEE 845

Query: 415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK 451
           ++  L +    +AA+IE   + I+ L+  +  +  ++
Sbjct: 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNER 882

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 47/198 (23%), Positives = 85/198 (42%), Gaps = 38/198 (19%)

Query: 202 IEKLEKEKENVS--------EYVEELKKKVSEME-------GAMTGPTEREKLEKEKCVL 246
           +++LE+E   +         E VEEL++++ E+E              E E+ EKE   L
Sbjct: 565 LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKL 624

Query: 247 EEDLNKFNAIIGELNMRKEKMEKLVEE------------KEREIGKKVEEHKRICEENEE 294
           EE+L+K    + E   R E++ K +EE               E  +   E   +  E EE
Sbjct: 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEE 684

Query: 295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL 354
            +KR +        ++    E +  ++++   E A    E        +L  K K+ +AL
Sbjct: 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE--------ELREKVKKYKAL 736

Query: 355 SMECNQAMKRL-KLATEI 371
             E  +A+ ++ ++A+EI
Sbjct: 737 LKE--RALSKVGEIASEI 752

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	100.0
COG5185	622	HEC1 Protein involved in chromosome segregation, i	100.0
PF03801	157	Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550	100.0
PRK02224	880	chromosome segregation protein; Provisional	98.13
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.13
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.11
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.1
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.05
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.99
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.99
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.97
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.95
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.93
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.84
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.83
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.8
PRK11637	428	AmiB activator; Provisional	97.79
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.78
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.76
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.76
PRK04863	1486	mukB cell division protein MukB; Provisional	97.71
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	97.7
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.66
PRK02224	880	chromosome segregation protein; Provisional	97.65
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.64
PRK03918	880	chromosome segregation protein; Provisional	97.63
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.61
PRK09039	343	hypothetical protein; Validated	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.6
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.59
PRK11637	428	AmiB activator; Provisional	97.58
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.58
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.5
PRK03918	880	chromosome segregation protein; Provisional	97.45
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.44
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.42
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.41
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.38
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.36
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.34
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.34
PRK01156	895	chromosome segregation protein; Provisional	97.33
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.32
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	97.28
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.26
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	97.26
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.21
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.2
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.17
PRK01156	895	chromosome segregation protein; Provisional	97.15
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.14
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.09
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.09
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.0
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.97
PRK04863	1486	mukB cell division protein MukB; Provisional	96.96
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.9
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.85
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.84
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.81
PRK09039	343	hypothetical protein; Validated	96.79
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.79
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.77
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.76
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.76
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.73
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.73
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.7
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.66
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.65
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.54
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.52
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.5
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.49
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.41
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.38
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.38
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.34
PRK04778	569	septation ring formation regulator EzrA; Provision	96.33
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.31
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.28
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.26
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.24
KOG1937	521	consensus Uncharacterized conserved protein [Funct	95.93
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.93
PRK04778	569	septation ring formation regulator EzrA; Provision	95.92
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.91
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.91
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.87
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.87
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	95.87
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.83
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.76
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.63
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.62
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.61
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.6
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	95.54
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.5
KOG1962	216	consensus B-cell receptor-associated protein and r	95.48
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.4
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.3
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.24
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	95.24
PRK10869	553	recombination and repair protein; Provisional	95.23
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.22
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.16
PRK11281	1113	hypothetical protein; Provisional	95.14
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.07
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.06
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.04
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.95
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	94.94
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.92
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	94.91
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	94.87
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.83
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.78
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.74
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.72
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	94.64
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.54
KOG4302	660	consensus Microtubule-associated protein essential	94.54
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	94.54
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.51
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.5
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.41
PRK14011	144	prefoldin subunit alpha; Provisional	94.3
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.21
COG2433	652	Uncharacterized conserved protein [Function unknow	94.12
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.06
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.04
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.99
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	93.96
PF13166	712	AAA_13: AAA domain	93.96
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	93.9
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.85
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.82
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	93.82
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.82
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	93.81
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.44
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.44
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.43
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.41
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.35
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.25
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	93.23
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	93.16
PF09762	182	KOG2701: Coiled-coil domain-containing protein (DU	93.14
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.12
PF14735	238	HAUS4: HAUS augmin-like complex subunit 4	93.1
PRK10929	1109	putative mechanosensitive channel protein; Provisi	93.06
KOG4677	554	consensus Golgi integral membrane protein [Intrace	93.01
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.01
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	92.87
PF13514	1111	AAA_27: AAA domain	92.83
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.73
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.71
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.71
PRK11281	1113	hypothetical protein; Provisional	92.64
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	92.62
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	92.6
PRK03947	140	prefoldin subunit alpha; Reviewed	92.38
KOG1937	521	consensus Uncharacterized conserved protein [Funct	92.38
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.36
COG2433	652	Uncharacterized conserved protein [Function unknow	92.28
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.24
COG4717	984	Uncharacterized conserved protein [Function unknow	92.17
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.13
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	92.12
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.01
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	91.78
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.73
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	91.64
KOG1962	216	consensus B-cell receptor-associated protein and r	91.52
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.48
KOG0979	1072	consensus Structural maintenance of chromosome pro	91.39
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.35
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	91.24
PRK10884	206	SH3 domain-containing protein; Provisional	90.91
PF14257	262	DUF4349: Domain of unknown function (DUF4349)	90.7
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	90.68
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	90.63
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	90.6
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.56
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.47
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.38
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	90.38
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	90.21
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.14
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	89.94
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	89.91
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	89.88
PRK10884	206	SH3 domain-containing protein; Provisional	89.86
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	89.8
PRK10476	346	multidrug resistance protein MdtN; Provisional	89.38
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	89.38
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	89.26
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.21
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	89.18
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	88.99
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	88.69
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.65
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	88.63
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.55
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	88.52
COG4372	499	Uncharacterized protein conserved in bacteria with	88.51
KOG0249	916	consensus LAR-interacting protein and related prot	88.45
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	88.14
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	87.96
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	87.94
PF08946	46	Osmo_CC: Osmosensory transporter coiled coil; Inte	87.67
KOG4302	660	consensus Microtubule-associated protein essential	87.51
PRK07720	146	fliJ flagellar biosynthesis chaperone; Validated	87.5
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	87.23
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	87.23
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	87.03
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	86.73
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	86.62
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	86.57
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	86.53
COG4372	499	Uncharacterized protein conserved in bacteria with	86.47
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	86.32
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	86.31
PF03915	424	AIP3: Actin interacting protein 3; InterPro: IPR02	86.26
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	86.17
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.11
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	86.06
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	85.95
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	85.54
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	85.5
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.48
KOG0979	1072	consensus Structural maintenance of chromosome pro	85.02
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	84.83
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.82
smart00806	426	AIP3 Actin interacting protein 3. Aip3p/Bud6p is a	84.58
PRK00409	782	recombination and DNA strand exchange inhibitor pr	84.56
PRK10361	475	DNA recombination protein RmuC; Provisional	84.51
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	84.47
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	84.42
PF14992	280	TMCO5: TMCO5 family	84.01
COG4477	570	EzrA Negative regulator of septation ring formatio	83.96
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.82
KOG2751	447	consensus Beclin-like protein [Signal transduction	83.52
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	83.46
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	83.42
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	83.29
PRK05689	147	fliJ flagellar biosynthesis chaperone; Validated	83.17
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	82.97
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	82.92
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	82.24
KOG1655	218	consensus Protein involved in vacuolar protein sor	82.14
PLN02939	977	transferase, transferring glycosyl groups	81.99
PF10186	302	Atg14: UV radiation resistance protein and autopha	81.97
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.77
PF13166	712	AAA_13: AAA domain	81.65
COG3879	247	Uncharacterized protein conserved in bacteria [Fun	81.59
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	81.52
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	81.41
cd00176	213	SPEC Spectrin repeats, found in several proteins i	81.29
COG2882	148	FliJ Flagellar biosynthesis chaperone [Cell motili	81.17
PRK09343	121	prefoldin subunit beta; Provisional	81.16
KOG2991	330	consensus Splicing regulator [RNA processing and m	81.02
KOG4807	593	consensus F-actin binding protein, regulates actin	80.72
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.57
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	80.5
PRK11519	719	tyrosine kinase; Provisional	80.33
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	80.28
KOG0249	916	consensus LAR-interacting protein and related prot	80.27
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	80.24
PRK04325	74	hypothetical protein; Provisional	80.09

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.3e-87  Score=681.75  Aligned_cols=445  Identities=31%  Similarity=0.492  Sum_probs=395.4

Q ss_pred             CCCC--CCCCCCCCC--CCC----CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q 012695            1 MRGK--VRRRPTESA--LQP----TPDLYG-GNRFGGSRDSDASFASSRPSSIGMG-RASAADLYTDRSHQSSAIRAINA   70 (458)
Q Consensus         1 ~~~~--~~~~~~~~~--~~~----~~~~~~-~~~~~~~r~s~~s~~~sr~s~~g~~-~~~DpRpl~DK~~q~~~~~~I~~   70 (458)
                      ||++  ++|++..|.  .+|    ++|.++ ..+.|++|+|++|   ||-|++..- +..||||++||+||++|++.|++
T Consensus         5 ~r~~~~~~r~t~~p~~~i~P~~~v~~pT~~~~valf~~r~S~~s---~~~~~~~~~~s~~dpRpl~dk~~~s~c~~~I~~   81 (581)
T KOG0995|consen    5 MRRKTAGKRGTGTPSGGINPTKRVTTPTSGTSVALFDRRPSLHS---SRLSSFNTSNSIRDPRPLSDKRYRSQCIRQIYN   81 (581)
T ss_pred             hhccccccccccCCCCCCCCCCCCCCCCCCcccccCCCCccccc---ccccccCchhccCCCCCcccHHHHHHHHHHHHH
Confidence            6733  566666655  233    444444 8899999999997   453333221 11279999999999999999999


Q ss_pred             HhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCCccccccccCCCCCCChHHHH
Q 012695           71 HLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYL  146 (458)
Q Consensus        71 fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~L  146 (458)
                      ||.+|||+  +|+|.++.||+|||+.||+|||.+|||++  +.+|||||+.|||.|||||.+++|++.|+||||+|||+|
T Consensus        82 fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH~WP~iL  161 (581)
T KOG0995|consen   82 FLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPHNWPHIL  161 (581)
T ss_pred             HHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCCccHHHH
Confidence            99999997  89999999999999999999999999665  799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCcc-------cccchHHHHHHHHHHHHHHhCCCCChhhhhHHHHHHHHHHHHhHHHHHHHH
Q 012695          147 ALIHWLVQIASYNYHLTTNSKA-------FVENNSMYMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYVEEL  219 (458)
Q Consensus       147 g~L~WLv~l~~~~~~~~~~~~~-------~~~~~~~~~y~~~~Y~~fl~g~d~~~e~l~~e~~~kl~~~~~~~~e~~~~L  219 (458)
                      |||||||+|+++..++..++..       -..+..||+|+++||.+||.|+|+ +.+++++|..+|.+.......++..|
T Consensus       162 ~mlhWlvdlI~~~t~~v~~~~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~-~~~~~~Elk~~l~~~~~~i~~~ie~l  240 (581)
T KOG0995|consen  162 GMLHWLVDLIRINTALVEDSPLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN-SSELEDELKHRLEKYFTSIANEIEDL  240 (581)
T ss_pred             HHHHHHHHHHHHhHHHhhccchhccchHHHHHHHHHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988876521       112248999999999999999998 56899999989998887777777777


Q ss_pred             HHHHHHHHh----ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          220 KKKVSEMEG----AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       220 ~~e~~eLe~----l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      ++...+|++    .+..|++++.|+++++.|++|+.||++|+.++.+++++|+++++.++.|++++++|++.++.++.+|
T Consensus       241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~L  320 (581)
T KOG0995|consen  241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDEL  320 (581)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666554    6678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCC-Ccce--
Q 012695          296 KKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLA-TEIQ--  372 (458)
Q Consensus       296 ~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~-~d~~--  372 (458)
                      +.+|+.|+||++||++||+|+++|++.++.+..+++.+.+.+|+++..+...+++++.++.+||.++++|+++ ..+.  
T Consensus       321 k~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n  400 (581)
T KOG0995|consen  321 KKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN  400 (581)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996 3333  


Q ss_pred             EecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          373 YSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       373 ~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      +.+|+.+..+   +|+||+..|+|.|..+.++|+..+++++.+++.||+.+++++..|++++..+..++.++..+++.+.
T Consensus       401 ~~~~pe~~~~---~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~  477 (581)
T KOG0995|consen  401 LERNPERAAT---NGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE  477 (581)
T ss_pred             CCcCCccCcc---ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466665555   7899999999999999999999999999999999999999999999999999999999999888765

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=100.00  E-value=5.9e-72  Score=556.23  Aligned_cols=391  Identities=20%  Similarity=0.338  Sum_probs=348.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCC
Q 012695           51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPF  126 (458)
Q Consensus        51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~  126 (458)
                      ||||||||+||++|+..|++||.++||+  +++|.++.||+|+|+.||+|||.++||.|  +++||+||+.+||.|+|||
T Consensus        96 DpRplrdk~yqq~c~~~I~~yL~engfd~pis~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~~~lKnL~YPf  175 (622)
T COG5185          96 DPRPLRDKNYQQACQEEIYDYLKENGFDIPISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVYQILKNLRYPF  175 (622)
T ss_pred             CCcccccchHHHHHHHHHHHHHHHcCCCcchhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHHHHHHhcCCch
Confidence            9999999999999999999999999994  78899999999999999999999999665  9999999999999999999


Q ss_pred             --ccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc--------ccccchHHHHHHHHHHHHHHhCCCCChhh
Q 012695          127 --KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK--------AFVENNSMYMYASDSYLNYIEGKDGDVDN  196 (458)
Q Consensus       127 --~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~--------~~~~~~~~~~y~~~~Y~~fl~g~d~~~e~  196 (458)
                        .||||+|+|+ |||+||.+||||||||.|+...+.+...-.        +..++..||+|++++|+.||.|+|++. +
T Consensus       176 l~sI~kSqlsAI-~ph~Wp~iLgMlhW~V~li~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~-~  253 (622)
T COG5185         176 LESINKSQLSAI-GPHNWPKILGMLHWMVRLIIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYE-P  253 (622)
T ss_pred             hhhhhHhHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccC-c
Confidence              9999999999 789999999999999999986665442211        123567899999999999999998764 4


Q ss_pred             hhHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          197 IDKGFIEKLE-------KEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK  269 (458)
Q Consensus       197 l~~e~~~kl~-------~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~  269 (458)
                      .+.+|...+.       .+++++..+...|.+.+.+-+++-   ..++.|+++..+|++|..||++|+..|++|.++|..
T Consensus       254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s---~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g  330 (622)
T COG5185         254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS---QKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG  330 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence            4555543333       344555555555555555544432   468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695          270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK  349 (458)
Q Consensus       270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~  349 (458)
                      ++..++.|++.++++++.++..+.+|+.+|.+|+||++|++.||.|+++|.+.++.+.-+.+.|.+.+.+.++.+...++
T Consensus       331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~  410 (622)
T COG5185         331 KLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK  410 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCC--------CCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          350 ELEALSMECNQAMKRLKL--------ATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ  421 (458)
Q Consensus       350 ~lE~~v~~yN~~~~~l~l--------~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~  421 (458)
                      ++|+.+.+||.++++|++        ++|+.+.+|+.+..|   .|.+++++|++.+.+|+..|..++...+...++|++
T Consensus       411 slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~---~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee  487 (622)
T COG5185         411 SLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFP---KGSGINESIKKSILELNDEIQERIKTEENKSITLEE  487 (622)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCc---cccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHH
Confidence            999999999999999998        568999999988777   778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          422 QSSEMAAKIEGKRKRIDALQFHINEVSA  449 (458)
Q Consensus       422 ~l~~~~~~i~~k~~e~~~Le~~~~~l~~  449 (458)
                      .++.++..|.++..+++-++.++-....
T Consensus       488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s  515 (622)
T COG5185         488 DIKNLKHDINELTQILEKLELELSEANS  515 (622)
T ss_pred             HhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988765443

>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle

Probab=100.00  E-value=3.5e-45  Score=331.26  Aligned_cols=141  Identities=40%  Similarity=0.643  Sum_probs=96.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccCCC---CCCCCCCCCCCHHHHHHHHHHH
Q 012695           23 GNRFGGSRDSDASFASSRPSSIGMGRASAADLYTDRSHQSSAIRAINAHLSSHSF---HIAFPLKQVPSVKDITDVIKFL   99 (458)
Q Consensus        23 ~~~~~~~r~s~~s~~~sr~s~~g~~~~~DpRpl~DK~~q~~~~~~I~~fL~~~~f---~~s~k~l~~PT~KdF~~If~fL   99 (458)
                      +++.||+|+|.+|+.++++++.+    .||||++||+||++|+++|++||.++||   +++.|.|++||+|||+.||+||
T Consensus         4 rss~~~~R~S~~~~~~~~~~~~~----~d~Rpl~Dk~~q~~~~~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL   79 (157)
T PF03801_consen    4 RSSVFGSRSSSASSSSSQPSSPQ----KDPRPLSDKSYQQECIRKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFL   79 (157)
T ss_dssp             ---------------------------S--S-TT-HHHHHHHHHHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHH
T ss_pred             cccccCCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHH
Confidence            45677888888876555555544    3799999999999999999999999999   5889999999999999999999


Q ss_pred             HHccCCC--CCcchHhHHHHHHHhcCCCC-ccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc
Q 012695          100 ISQLDYP--STTKFEEDLFVVLKSLSCPF-KINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK  167 (458)
Q Consensus       100 ~~~iD~~--~~~k~EeEv~~~lK~L~YP~-~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~  167 (458)
                      |++|||.  |++|+||||+.+||.||||| +||||+|.|||+||+||++||||+|||+|+.+.+.+.+...
T Consensus        80 ~~~idp~~~~~~k~eeev~~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~l~~~~~~~~~~~~  150 (157)
T PF03801_consen   80 FRQIDPNFKFGKKFEEEVPFLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVELIKYEEELDSNSE  150 (157)
T ss_dssp             HHTTSTT---SSTHHHHHHHHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHhCCCCCcCcCHHHHHHHHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            9999955  48899999999999999999 99999999999999999999999999999999998876654

It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.13  E-value=0.0024  Score=73.36  Aligned_cols=15  Identities=27%  Similarity=0.350  Sum_probs=8.0

Q ss_pred             CCHHHHHHHHHHHHH
Q 012695           87 PSVKDITDVIKFLIS  101 (458)
Q Consensus        87 PT~KdF~~If~fL~~  101 (458)
                      .+.++...||.-|+.
T Consensus       146 ~~p~~R~~ii~~l~~  160 (880)
T PRK02224        146 ATPSDRQDMIDDLLQ  160 (880)
T ss_pred             CCHHHHHHHHHHHhC
Confidence            344555555655554

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.13  E-value=0.003  Score=74.23  Aligned_cols=44  Identities=27%  Similarity=0.374  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       411 ~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~  454 (458)
                      ....++..++..++.+...+.+.+.++..++.++..+..++..|
T Consensus       893 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~  936 (1164)
T TIGR02169       893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI  936 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555566666666666666666666666666655555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.11  E-value=0.0076  Score=68.33  Aligned_cols=102  Identities=12%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      +.....+.+.+.++..++++++.....++.+.....+.+++|+.-   .++++.+..|++.+.++++.+..+..+++...
T Consensus       284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~---~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~  360 (1074)
T KOG0250|consen  284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL---KDEVDAQDEEIEEARKDLDDLRREVNDLKEEI  360 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555554444444444444444444332   34556666666666777776666666666666


Q ss_pred             hHHHhHH---hhHHHHHHHHHHHHHHHH
Q 012695          338 WDLDSKL---GRKFKELEALSMECNQAM  362 (458)
Q Consensus       338 ~~~e~~~---~~~~~~lE~~v~~yN~~~  362 (458)
                      .+.+..+   ...++.++..|..|+.-.
T Consensus       361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  361 REIENSIRKLKKEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655544   335566777777776654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.10  E-value=0.0046  Score=72.70  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHH-HccCCCC--CcchHhHHHHHHHhcC
Q 012695           90 KDITDVIKFLI-SQLDYPS--TTKFEEDLFVVLKSLS  123 (458)
Q Consensus        90 KdF~~If~fL~-~~iD~~~--~~k~EeEv~~~lK~L~  123 (458)
                      ++|..-+.-.. ..+++-+  ....-..++.+||.-+
T Consensus       535 ~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~  571 (1164)
T TIGR02169       535 ERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK  571 (1164)
T ss_pred             HHHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcC
Confidence            45544433333 3555543  3334456777777555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.05  E-value=0.0067  Score=71.21  Aligned_cols=40  Identities=23%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL  453 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~  453 (458)
                      .++..++..+..+...+...+.++..++.+++.+..++.+
T Consensus       901 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e  940 (1179)
T TIGR02168       901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN  940 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555556655555554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.99  E-value=0.011  Score=69.55  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINE  446 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~  446 (458)
                      .+...++..+..+...+...+.++..++.++..
T Consensus       908 ~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e  940 (1179)
T TIGR02168       908 SKRSELRRELEELREKLAQLELRLEGLEVRIDN  940 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555555555555554444444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.99  E-value=0.018  Score=58.05  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      .+|+..+..+++.+...+...+...++|+.++..++.++.
T Consensus       215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~  254 (312)
T PF00038_consen  215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD  254 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence            3455555555555555555555555555555555555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.97  E-value=0.0058  Score=72.31  Aligned_cols=69  Identities=9%  Similarity=0.025  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHccCCCC--CcchHhHHHHHHHh--cCCCCccccccccCC--CCCCChHHHHHHHHHHHHHHhhhhh
Q 012695           90 KDITDVIKFLISQLDYPS--TTKFEEDLFVVLKS--LSCPFKINKSTLRSP--NSPHNWPAYLALIHWLVQIASYNYH  161 (458)
Q Consensus        90 KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~--L~YP~~IsKS~L~av--G~pHsWP~~Lg~L~WLv~l~~~~~~  161 (458)
                      +--..|=-.|-..+++.+  ....-..++.+||.  +|..=.|--..+.+.  ..+.+   .=|.+.-+++++.+.+.
T Consensus       530 ~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~---~~g~~~~a~dli~~d~~  604 (1163)
T COG1196         530 KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA---APGFLGLASDLIDFDPK  604 (1163)
T ss_pred             HHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc---ccchhHHHHHHhcCCHH
Confidence            333334444444777554  34466778999985  555532222222211  11111   22445556677776653

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.95  E-value=0.0055  Score=72.47  Aligned_cols=137  Identities=18%  Similarity=0.321  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC-CCcc---eEecCCCCCCCc
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL-ATEI---QYSLNSNGSTPS  383 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l-~~d~---~~~ln~~~~~~~  383 (458)
                      +++..+.++..+...+..++.....+...+.+++..+......++.+...+|.+..+... ...+   ...+..    + 
T Consensus       864 ~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~-  938 (1163)
T COG1196         864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE----E-  938 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----c-
Confidence            344555566666666666667777777777766666666666666666666654333321 1111   011110    1 


Q ss_pred             cccccchhhchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          384 EVMGVDYKSTLKPALESFADDVKRS---SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       384 ei~~~d~k~~ik~~L~~l~~~i~~~---~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                        ....+...+...+..+...+...   -..+.++...+.+.++.+..+.++.......|+..+.++++..
T Consensus       939 --~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196         939 --YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred             --cccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              10111113444455554443321   1122345556666666666666666666666666666655543

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.0074  Score=65.79  Aligned_cols=146  Identities=10%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHH----------
Q 012695          288 ICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSME----------  357 (458)
Q Consensus       288 l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~----------  357 (458)
                      ++-|+.+.+.-+...+--.++|-+.|.....|+..++.+..++.+|..++.+..+.+.....+++.+-..          
T Consensus       411 lewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~q  490 (1118)
T KOG1029|consen  411 LEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQ  490 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHH
Confidence            3445555555555555556788888888889999999999999999999999888777766666554433          


Q ss_pred             -------HHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          358 -------CNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALES------FADDVKRSSVEKLEELISLQQQSS  424 (458)
Q Consensus       358 -------yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~------l~~~i~~~~~~~~~e~~~l~~~l~  424 (458)
                             |+..+.+|-..              ..+++..++    ..=..      -..++...+..++.-+..+.++++
T Consensus       491 lqarikE~q~kl~~l~~E--------------kq~l~~qlk----q~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqld  552 (1118)
T KOG1029|consen  491 LQARIKELQEKLQKLAPE--------------KQELNHQLK----QKQSAHKETTQRKSELEAARRKKELIRQAIKDQLD  552 (1118)
T ss_pred             HHHHHHHHHHHHHhhhhH--------------HHHHHHHHH----HhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   33322222110              001111111    10000      011222233333344556777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          425 EMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       425 ~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      ++.+.++.|.++++.+..++.+|.+.+
T Consensus       553 elskE~esk~~eidi~n~qlkelk~~~  579 (1118)
T KOG1029|consen  553 ELSKETESKLNEIDIFNNQLKELKEDV  579 (1118)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            777777777777777777777776654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.84  E-value=0.039  Score=56.18  Aligned_cols=129  Identities=17%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCHH----HH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRI-CEENEEFKKRVKLQTINAR----DV  309 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l-~~E~~~L~~~v~~Q~~S~~----di  309 (458)
                      .++.|+...+.|..++..+..++..+..+.+.+..++..+++-...    ++.. ..+.+.++..+..+....+    ++
T Consensus       157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l  232 (325)
T PF08317_consen  157 NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE----IESCDQEELEALRQELAEQKEEIEAKKKEL  232 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666666666666666666666666666665555433221    1111 1334444555555544444    77


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh----HHHHHHHHHHHHHHHHHhcCC
Q 012695          310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR----KFKELEALSMECNQAMKRLKL  367 (458)
Q Consensus       310 ~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~----~~~~lE~~v~~yN~~~~~l~l  367 (458)
                      ..++.+++.+...|+.+..++.++...+.+.+.....    ...++..+-..|+.+-...|.
T Consensus       233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw  294 (325)
T PF08317_consen  233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGW  294 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCc
Confidence            7777788888888888888888887777776654432    335777788888877766665

>TIGR00606 rad50 rad50

Probab=97.83  E-value=0.02  Score=68.69  Aligned_cols=102  Identities=12%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER------EIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (458)
Q Consensus       237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~------el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~  310 (458)
                      ..++++...++.++.....-+..++....+....+..++.      .+.....++..++.++++|...+...+-+ ..++
T Consensus       747 p~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~-~s~~  825 (1311)
T TIGR00606       747 PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD-RTVQ  825 (1311)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHH
Confidence            3444444444444444444444444444333333322211      11222445555555555555554444332 2445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695          311 RMRRELQAVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      .+..++..++..++.+...++.+......
T Consensus       826 ele~ei~~~~~el~~l~~~~e~l~~e~e~  854 (1311)
T TIGR00606       826 QVNQEKQEKQHELDTVVSKIELNRKLIQD  854 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666665555555544444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=0.12  Score=59.17  Aligned_cols=70  Identities=17%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHccCCCC--CcchHhHHHHHHHhcCCCC----ccc-----cccccCCCCCCChHHHHH
Q 012695           79 IAFPLKQVPSVKDITDVIKFLISQLDYPS--TTKFEEDLFVVLKSLSCPF----KIN-----KSTLRSPNSPHNWPAYLA  147 (458)
Q Consensus        79 ~s~k~l~~PT~KdF~~If~fL~~~iD~~~--~~k~EeEv~~~lK~L~YP~----~Is-----KS~L~avG~pHsWP~~Lg  147 (458)
                      --+..|-....|==++|-. .+.+|||-+  +.---.+++.+||..+-|+    .+.     +..+..+.+|-+-|-+..
T Consensus       620 GRLGDLg~Id~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfD  698 (1293)
T KOG0996|consen  620 GRLGDLGAIDEKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFD  698 (1293)
T ss_pred             cccccccccchHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhh
Confidence            3455555555665556666 788999877  3444578999999999998    233     455899999999997554


Q ss_pred             HH
Q 012695          148 LI  149 (458)
Q Consensus       148 ~L  149 (458)
                      .+
T Consensus       699 Lv  700 (1293)
T KOG0996|consen  699 LV  700 (1293)
T ss_pred             hh
Confidence            33

>PRK11637 AmiB activator; Provisional

Probab=97.79  E-value=0.074  Score=56.17  Aligned_cols=41  Identities=15%  Similarity=0.236  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI  278 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el  278 (458)
                      .+..+...++..+...+.-+..++.++..++..|..+++++
T Consensus        79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l  119 (428)
T PRK11637         79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ  119 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.78  E-value=0.01  Score=63.61  Aligned_cols=39  Identities=26%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      +|+..+...++.+..++.+.......|+.+++.|+-|++
T Consensus       296 EEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~  334 (546)
T KOG0977|consen  296 EELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD  334 (546)
T ss_pred             HHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence            455555555555555555555555555555555555544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.76  E-value=0.0087  Score=58.17  Aligned_cols=190  Identities=21%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E  315 (458)
                      ...|..++..|+.++.+.+.-+.....+....++........+...+.........+..|..++..-....+++++...+
T Consensus        38 ~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E  117 (237)
T PF00261_consen   38 VASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE  117 (237)
T ss_dssp             HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555544444444444444444444444433333334444444444444445544444445555543322


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhHHHhHHh---hHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCcccccc
Q 012695          316 ----LQAVERDIADAENARNEWESKTWDLDSKLG---RKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGV  388 (458)
Q Consensus       316 ----~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~---~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~  388 (458)
                          ...+...++.++.+.+.+..++.+++-.+.   ..+..++.....|+.-..                         
T Consensus       118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~-------------------------  172 (237)
T PF00261_consen  118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED-------------------------  172 (237)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------------------------
Confidence                344555555555555555555555554442   233444444444433221                         


Q ss_pred             chhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          389 DYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       389 d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      .|...|+. |..-.++...+..........|+..++.+...+..-+.....++..++..=..|
T Consensus       173 ~~e~~i~~-L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  173 EYEEKIRD-LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12222222 333333444455555566777777777777777777777777777665544443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.76  E-value=0.024  Score=68.70  Aligned_cols=52  Identities=13%  Similarity=0.158  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV  447 (458)
Q Consensus       396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l  447 (458)
                      ..|.+...++..++..+.+++...............++..++++|+.+++..
T Consensus      1093 ~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1093 AQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555555555555543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.71  E-value=0.017  Score=69.39  Aligned_cols=50  Identities=12%  Similarity=0.055  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      +.|+..++.......+....+.+++..+......++.+-..||.++.-.|
T Consensus       438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G  487 (1486)
T PRK04863        438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG  487 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34555556666666677777777777777777777777777777766555

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=97.70  E-value=0.0062  Score=59.78  Aligned_cols=39  Identities=23%  Similarity=0.502  Sum_probs=33.3

Q ss_pred             HhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 012695          120 KSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHL  162 (458)
Q Consensus       120 K~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~  162 (458)
                      |.||||=.||=..+.+|    |||-+--+|+|||......-.+
T Consensus         1 R~LGypr~iSmenFrtP----NF~LVAeiL~WLv~rydP~~~i   39 (267)
T PF10234_consen    1 RALGYPRLISMENFRTP----NFELVAEILRWLVKRYDPDADI   39 (267)
T ss_pred             CCCCCCCCCcHHHcCCC----ChHHHHHHHHHHHHHcCCCCCC
Confidence            57999999999999986    9999999999999987654433

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.66  E-value=0.16  Score=56.45  Aligned_cols=92  Identities=14%  Similarity=0.248  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      ..++.....+...|.+.+..-...-.++.++++||-.||++|..-+-|-.+++-|++|+.+|..+++-+..+++++..--
T Consensus        72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk  151 (717)
T PF09730_consen   72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLK  151 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555556667889999999999999999999999999999999999999999988888776654


Q ss_pred             hHHHhHHhhHHH
Q 012695          338 WDLDSKLGRKFK  349 (458)
Q Consensus       338 ~~~e~~~~~~~~  349 (458)
                      .-.|..+..+++
T Consensus       152 ~iae~qleEALe  163 (717)
T PF09730_consen  152 EIAEKQLEEALE  163 (717)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK02224 chromosome segregation protein; Provisional

Probab=97.65  E-value=0.088  Score=60.57  Aligned_cols=36  Identities=28%  Similarity=0.269  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          419 LQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       419 l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~  454 (458)
                      +++.++...+.+++...+++.|+.++.++++.+..|
T Consensus       521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~  556 (880)
T PRK02224        521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEK  556 (880)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444555555556666666666666666544

>TIGR00606 rad50 rad50

Probab=97.64  E-value=0.056  Score=64.88  Aligned_cols=8  Identities=13%  Similarity=0.040  Sum_probs=3.6

Q ss_pred             CChHHHHH
Q 012695          140 HNWPAYLA  147 (458)
Q Consensus       140 HsWP~~Lg  147 (458)
                      ..++.+|.
T Consensus       635 ~~~~~~L~  642 (1311)
T TIGR00606       635 QDEESDLE  642 (1311)
T ss_pred             hhHHHHHH
Confidence            34444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=97.63  E-value=0.074  Score=61.11  Aligned_cols=9  Identities=22%  Similarity=0.143  Sum_probs=3.5

Q ss_pred             CCCCCCCCC
Q 012695           25 RFGGSRDSD   33 (458)
Q Consensus        25 ~~~~~r~s~   33 (458)
                      ...|...||
T Consensus        27 ~i~G~nG~G   35 (880)
T PRK03918         27 LIIGQNGSG   35 (880)
T ss_pred             EEEcCCCCC
Confidence            344433333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.61  E-value=0.029  Score=63.66  Aligned_cols=55  Identities=18%  Similarity=0.251  Sum_probs=40.8

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          398 LESFADDVKR---SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       398 L~~l~~~i~~---~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      ..+|+.+-..   ....+.+.+.+|+-........++++..+|+.|+.+++.+-.-+.
T Consensus      1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            4555555444   344455677788888889999999999999999999988765543

>PRK09039 hypothetical protein; Validated

Probab=97.60  E-value=0.1  Score=53.49  Aligned_cols=23  Identities=13%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             CCChHHHHHHHHHHHHHHhhhhh
Q 012695          139 PHNWPAYLALIHWLVQIASYNYH  161 (458)
Q Consensus       139 pHsWP~~Lg~L~WLv~l~~~~~~  161 (458)
                      .+-||.|+.+|+=|.-++.+.-.
T Consensus        13 ~~~wpg~vd~~~~ll~~~~f~l~   35 (343)
T PRK09039         13 VDYWPGFVDALSTLLLVIMFLLT   35 (343)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHH
Confidence            36899999999988887766543

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.60  E-value=0.082  Score=57.49  Aligned_cols=123  Identities=18%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hcC
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-----------QTI  304 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~-----------Q~~  304 (458)
                      ++.++++...+......++.-++.++..+..+...+....+.+...+.++..++.+...++..+..           +.+
T Consensus       215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~  294 (562)
T PHA02562        215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI  294 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence            445555555555555555555555555554444444444444444555555555555555544442           222


Q ss_pred             C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHH
Q 012695          305 N--ARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECN  359 (458)
Q Consensus       305 S--~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN  359 (458)
                      +  +..+..+...+..++..++.+...+.++++...+..- +...+.+++..+...+
T Consensus       295 ~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~-~~~~i~el~~~i~~~~  350 (562)
T PHA02562        295 SEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE-QSKKLLELKNKISTNK  350 (562)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            1  4555566666666666666666666555444332111 3334444444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.60  E-value=0.08  Score=57.58  Aligned_cols=7  Identities=14%  Similarity=0.420  Sum_probs=3.0

Q ss_pred             HHHHHHH
Q 012695          150 HWLVQIA  156 (458)
Q Consensus       150 ~WLv~l~  156 (458)
                      .|+.+++
T Consensus       117 ~~i~~~~  123 (562)
T PHA02562        117 KYFEQML  123 (562)
T ss_pred             HHHHHHH
Confidence            4444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.59  E-value=0.16  Score=54.59  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          411 EKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV  447 (458)
Q Consensus       411 ~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l  447 (458)
                      ...+++.+|...+..+.+.+.+.+.+-..|+.++.+.
T Consensus       368 ~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke  404 (546)
T PF07888_consen  368 ADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKE  404 (546)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345677788888888888888888888888777653

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=97.58  E-value=0.012  Score=62.09  Aligned_cols=6  Identities=0%  Similarity=-0.047  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 012695          241 KEKCVL  246 (458)
Q Consensus       241 ~~~~~L  246 (458)
                      ++...+
T Consensus        47 ~~l~~l   52 (428)
T PRK11637         47 DQLKSI   52 (428)
T ss_pred             HHHHHH
Confidence            333333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.12  Score=54.75  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL  316 (458)
Q Consensus       237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~  316 (458)
                      ...+.+...|..-..+|......++...-.+...|.+.+-.-...-.++..+++|+-.||++|.+-.-|.-+++-+++|+
T Consensus       124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei  203 (772)
T KOG0999|consen  124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI  203 (772)
T ss_pred             HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence            33334444444444444444455555555566666666665566778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 012695          317 QAVERDIADAENARNEWES  335 (458)
Q Consensus       317 ~~L~~~i~~l~~~~~~l~~  335 (458)
                      .+|...++-+..+.++...
T Consensus       204 kRleEe~elln~q~ee~~~  222 (772)
T KOG0999|consen  204 KRLEEETELLNSQLEEAIR  222 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999877777765543

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.50  E-value=0.032  Score=67.75  Aligned_cols=69  Identities=22%  Similarity=0.310  Sum_probs=56.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          234 TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ  302 (458)
Q Consensus       234 ~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q  302 (458)
                      ..+..+..+...+..++.+++.-|..++.++.++...++.........+....++..+.+.|+.+++.|
T Consensus      1076 ~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1076 SELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777777888888888888888888888888888888888888888899999999999888

>PRK03918 chromosome segregation protein; Provisional

Probab=97.45  E-value=0.13  Score=59.05  Aligned_cols=20  Identities=10%  Similarity=0.082  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 012695          435 KRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       435 ~e~~~Le~~~~~l~~q~~~~  454 (458)
                      .++..++.++..++..|..|
T Consensus       532 ~~~~~l~~~l~~l~~~l~~~  551 (880)
T PRK03918        532 EKLIKLKGEIKSLKKELEKL  551 (880)
T ss_pred             HHHHHHHhHHHHHHHHHHHH
Confidence            33444444444445554443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.44  E-value=0.12  Score=58.21  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695          316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK  363 (458)
Q Consensus       316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~  363 (458)
                      ...|++.|+.-.+.+..........+-.+....++|..+.-.||.+..
T Consensus       309 ~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~  356 (1200)
T KOG0964|consen  309 IKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD  356 (1200)
T ss_pred             hHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            344555555444444444444455555556666677777777776653

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.42  E-value=0.29  Score=55.97  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ  441 (458)
Q Consensus       409 ~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le  441 (458)
                      ....+++.-.++..+..+..+|+....++.+|.
T Consensus       431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344555555555555555555555555554

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.41  E-value=0.064  Score=64.36  Aligned_cols=123  Identities=15%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 012695          205 LEKEKENVSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK--------------  269 (458)
Q Consensus       205 l~~~~~~~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~--------------  269 (458)
                      |....++..+.++.|.+.+..++. +..-...+..+..+......++.+++.++..|..+.+.+..              
T Consensus      1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~ 1313 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLK 1313 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            444555555566666666666554 22222367788889999999999999999999987655544              


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          270 -LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW  333 (458)
Q Consensus       270 -~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l  333 (458)
                       .|..+++++..++..+..+..+..+++..+..      +++..+.++..+.+.+..+......+
T Consensus      1314 ~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~------qld~l~~e~~~lt~~~~ql~~~~~rL 1372 (1822)
T KOG4674|consen 1314 SEISRLKEELEEKENLIAELKKELNRLQEKIKK------QLDELNNEKANLTKELEQLEDLKTRL 1372 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             46677777777777778888888888755544      35566666666666665544444333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.38  E-value=0.0093  Score=60.71  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHH
Q 012695          245 VLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVER  321 (458)
Q Consensus       245 ~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~-~Q~~S~~di~rmn~E~~~L~~  321 (458)
                      .++..+.....-+.........++.++..++.++++...+...+..++.+++..++ .+++|..||.++..+.+.|++
T Consensus       213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34444444444445555555666666666666666666666777777777776665 667788888877777776655

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.36  E-value=0.31  Score=52.46  Aligned_cols=14  Identities=36%  Similarity=0.411  Sum_probs=10.6

Q ss_pred             CCCCHHHHHHHHHH
Q 012695           85 QVPSVKDITDVIKF   98 (458)
Q Consensus        85 ~~PT~KdF~~If~f   98 (458)
                      -.|+.+|.++||+-
T Consensus        32 ~~ps~~DWIGiFKV   45 (546)
T PF07888_consen   32 FHPSSKDWIGIFKV   45 (546)
T ss_pred             CCCCCCCeeEEeec
Confidence            46888888888763

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.28  Score=56.40  Aligned_cols=16  Identities=13%  Similarity=0.154  Sum_probs=12.1

Q ss_pred             hHHHHHHHHHHHHHHh
Q 012695          142 WPAYLALIHWLVQIAS  157 (458)
Q Consensus       142 WP~~Lg~L~WLv~l~~  157 (458)
                      =|+==|||-+|-|++-
T Consensus       246 ~e~d~GmLEYLEDIIG  261 (1293)
T KOG0996|consen  246 TENDEGMLEYLEDIIG  261 (1293)
T ss_pred             CCCcchHHHHHHHHhc
Confidence            3556689999988874

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.34  E-value=0.37  Score=54.38  Aligned_cols=112  Identities=15%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR  314 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~  314 (458)
                      +++.+......++.++.+++.-+...+.+...|...+..+..+++.+...+......+..++.          +..++..
T Consensus       309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe----------E~~~~~~  378 (775)
T PF10174_consen  309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE----------EKSRLQG  378 (775)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence            566666667777777777777777888888888888888877777777777777766666643          4445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH
Q 012695          315 ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM  356 (458)
Q Consensus       315 E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~  356 (458)
                      |+..+...++..+..+..++.++.+++-.+..+-..+.....
T Consensus       379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~  420 (775)
T PF10174_consen  379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE  420 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555444444334444433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.34  E-value=0.093  Score=50.96  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL  453 (458)
Q Consensus       406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~  453 (458)
                      ..+.....+.+..|..++.......+.-...+..|+.+++.|+..|..
T Consensus       168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~  215 (237)
T PF00261_consen  168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK  215 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445556666666666666666666666666666666665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK01156 chromosome segregation protein; Provisional

Probab=97.33  E-value=0.3  Score=56.36  Aligned_cols=26  Identities=31%  Similarity=0.529  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          429 KIEGKRKRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       429 ~i~~k~~e~~~Le~~~~~l~~q~~~~  454 (458)
                      .+++...++..++.++..+++.+.+|
T Consensus       523 ~~~~l~~~l~~~~~~l~~le~~~~~~  548 (895)
T PRK01156        523 KIESARADLEDIKIKINELKDKHDKY  548 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566665566666655555

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.32  E-value=0.31  Score=54.54  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL  344 (458)
Q Consensus       265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~  344 (458)
                      .++-.+...++.+|.....+.+++.+-.++++..++.-   ++-|+-..-+.+--+..-+.+...++.+++++.++++.+
T Consensus       272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~---ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl  348 (1243)
T KOG0971|consen  272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADT---ADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL  348 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444344443333321   222333333333344444455555555555555555544


Q ss_pred             hhHHHHHHH
Q 012695          345 GRKFKELEA  353 (458)
Q Consensus       345 ~~~~~~lE~  353 (458)
                      .=...+++.
T Consensus       349 EILKaEmee  357 (1243)
T KOG0971|consen  349 EILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHh
Confidence            444444443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=97.28  E-value=0.11  Score=53.68  Aligned_cols=291  Identities=17%  Similarity=0.255  Sum_probs=152.7

Q ss_pred             HHhccCCCC-CC---CC-CCCCCCH--HHHHHHHHHHHHccCCCC--Ccch------HhHHHHHHHhcCCCCcccccccc
Q 012695           70 AHLSSHSFH-IA---FP-LKQVPSV--KDITDVIKFLISQLDYPS--TTKF------EEDLFVVLKSLSCPFKINKSTLR  134 (458)
Q Consensus        70 ~fL~~~~f~-~s---~k-~l~~PT~--KdF~~If~fL~~~iD~~~--~~k~------EeEv~~~lK~L~YP~~IsKS~L~  134 (458)
                      +|+..++++ ++   .- .-.+|.-  -.|..+..||++....+|  ...+      -.-|...||.+|.|-.+.-|.|.
T Consensus        16 ~f~~~~~~kpl~r~yFa~~~~Np~eQF~~F~~L~~WL~~~~g~~f~~p~e~DDPn~~~~~Il~~lr~~g~~~df~p~kLk   95 (359)
T PF10498_consen   16 DFCKKRKMKPLSRHYFAVPSTNPGEQFYYFTSLCAWLISKAGRKFEQPQEYDDPNATISNILDELRKLGVPVDFPPSKLK   95 (359)
T ss_pred             HHhhhcCCCCCCHHHhcCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHHHHccCCCCCCChHHhh
Confidence            466666542 32   00 1245653  789999999999887444  2233      34577888999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCc----------ccccc--hHHHHHHHHHHHHHHhCCCCChhh-hhHHH
Q 012695          135 SPNSPHNWPAYLALIHWLVQIASYNYHLTTNSK----------AFVEN--NSMYMYASDSYLNYIEGKDGDVDN-IDKGF  201 (458)
Q Consensus       135 avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~----------~~~~~--~~~~~y~~~~Y~~fl~g~d~~~e~-l~~e~  201 (458)
                      + |+.   ++++.+|.=|++.+.-...+.=...          ++.++  .+..+-+.+    -...++++.++ ++-.+
T Consensus        96 ~-G~G---e~vc~VLd~Lad~AL~~~~F~~~~p~~~~e~~e~~~v~ddd~e~~~~~~ee----e~~~~~~~~dd~~d~~~  167 (359)
T PF10498_consen   96 Q-GSG---EHVCYVLDQLADEALKRKNFKWKRPIYPKEEDEEEDVEDDDAEIILDKVEE----EQEIEEDDDDDFIDLNF  167 (359)
T ss_pred             C-CCC---HHHHHHHHHHHHHHHHhcCcCccCCCCCccccccccccccchhhhhhhccc----cccccccchHHHhhHHH
Confidence            8 432   6899999999998764432211000          00000  011110000    00000000000 00001


Q ss_pred             HHHH------------HHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          202 IEKL------------EKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK  269 (458)
Q Consensus       202 ~~kl------------~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~  269 (458)
                      ..+-            ...+++.. ...+=+.|++++-     |    .|   +.....|-.--..-++.|..+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~i~es~v-d~~eWklEvERV~-----P----qL---Kv~~~~d~kDWR~hleqm~~~~~~I~~  234 (359)
T PF10498_consen  168 LDKKTKNGDTEEKQKPEEIIESKV-DPAEWKLEVERVL-----P----QL---KVTIRADAKDWRSHLEQMKQHKKSIES  234 (359)
T ss_pred             HhhhhcccccccccchhhcccccC-CHHHHHHHHHHHh-----h----hh---eeeccCCcchHHHHHHHHHHHHHHHHH
Confidence            0000            00000000 0011111222211     1    01   112223333333444444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695          270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK  349 (458)
Q Consensus       270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~  349 (458)
                      .+...+..|.....++...-+.+...++.|.+      +++.+-.+...++..+.+++.+..+....+.++-..+++--+
T Consensus       235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~------qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise  308 (359)
T PF10498_consen  235 ALPETKSQLDKLQQDISKTLEKIESREKYINN------QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE  308 (359)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            55555555555555555555566666666665      466777888888888888888888888888887777777777


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHH
Q 012695          350 ELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKR  407 (458)
Q Consensus       350 ~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~  407 (458)
                      ++|.+-.+-..-..++            +..+|        --.||.+|.+|+++|.+
T Consensus       309 eLe~vK~emeerg~~m------------tD~sP--------lv~IKqAl~kLk~EI~q  346 (359)
T PF10498_consen  309 ELEQVKQEMEERGSSM------------TDGSP--------LVKIKQALTKLKQEIKQ  346 (359)
T ss_pred             HHHHHHHHHHHhcCCC------------CCCCH--------HHHHHHHHHHHHHHHHH
Confidence            7776655433321111            11123        23478899999999876

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.28  Score=55.50  Aligned_cols=29  Identities=28%  Similarity=0.289  Sum_probs=13.7

Q ss_pred             HHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695          330 RNEWESKTWDLDSKLGRKFKELEALSMEC  358 (458)
Q Consensus       330 ~~~l~~~~~~~e~~~~~~~~~lE~~v~~y  358 (458)
                      +..+...+.-.+..-+.....++.++..|
T Consensus       908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~  936 (1174)
T KOG0933|consen  908 RKKLEHEVTKLESEKANARKEVEKLLKKH  936 (1174)
T ss_pred             HHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence            33333444444444444555555565555

>smart00787 Spc7 Spc7 kinetochore protein

Probab=97.26  E-value=0.27  Score=49.75  Aligned_cols=130  Identities=22%  Similarity=0.319  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK----VEEHKRICEENEEFKKRVKLQTINARDVE  310 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~----~~el~~l~~E~~~L~~~v~~Q~~S~~di~  310 (458)
                      .++.|+.....|..+++....++..+..+.+.+..++..+++-....    ..++..++.++.++...|..-   ..+++
T Consensus       152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~---~~~l~  228 (312)
T smart00787      152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIK---VKKLE  228 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            35566666666777777777777777777777776666655433322    235555555544444443332   33455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh----HHHHHHHHHHHHHHHHHhcCC
Q 012695          311 RMRRELQAVERDIADAENARNEWESKTWDLDSKLGR----KFKELEALSMECNQAMKRLKL  367 (458)
Q Consensus       311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~----~~~~lE~~v~~yN~~~~~l~l  367 (458)
                      ..+.++..+...|+....++.++...+.+.+..+..    ...++..+...|+.+=...|+
T Consensus       229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~  289 (312)
T smart00787      229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGW  289 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            556666666666666666666666666666654422    234677777777766554444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.21  E-value=0.42  Score=57.04  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      +.+...++...+.....+...+.++..++.++.++..+|+
T Consensus       496 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~  535 (1201)
T PF12128_consen  496 QAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLD  535 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3445555555556666666666666667777776666664

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.20  E-value=0.31  Score=49.04  Aligned_cols=123  Identities=17%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR  314 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~  314 (458)
                      +++........++.++.++..-++........++.++..+++++......   -++++..|+.++. ...++ +++.  .
T Consensus        90 k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~---heeEi~~L~~~~~-~~~~~-e~~~--~  162 (312)
T PF00038_consen   90 KYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN---HEEEIEELREQIQ-SSVTV-EVDQ--F  162 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTSTT----------------
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccc-cccce-eecc--c
Confidence            34555566666777777777766776666777777777777777654332   3356667766665 22322 2222  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-HHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695          315 ELQAVERDIADAENARNEWESKTW-DLDSKLGRKFKELEALSMECNQAMKR  364 (458)
Q Consensus       315 E~~~L~~~i~~l~~~~~~l~~~~~-~~e~~~~~~~~~lE~~v~~yN~~~~~  364 (458)
                      -...|...+..+....+..-.+.+ +.+..+..++.++...+...+..+..
T Consensus       163 ~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~  213 (312)
T PF00038_consen  163 RSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELES  213 (312)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccch
Confidence            223355555555555543333333 45556666777776666665555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.17  E-value=0.41  Score=54.31  Aligned_cols=43  Identities=19%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFLQ  456 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~~  456 (458)
                      .++.+|+..+..+...-.+.+.+++.|..++.=+.++-..|-.
T Consensus       906 l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk  948 (1174)
T KOG0933|consen  906 LERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGK  948 (1174)
T ss_pred             chHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcC
Confidence            3555666666677766777777777777777766666666544

>PRK01156 chromosome segregation protein; Provisional

Probab=97.15  E-value=0.53  Score=54.37  Aligned_cols=29  Identities=17%  Similarity=0.339  Sum_probs=12.4

Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012695          196 NIDKGFIEKLEKEKENVSEYVEELKKKVS  224 (458)
Q Consensus       196 ~l~~e~~~kl~~~~~~~~e~~~~L~~e~~  224 (458)
                      +...++...+...+..+..++..|+.++.
T Consensus       465 e~~~e~i~~~~~~i~~l~~~i~~l~~~~~  493 (895)
T PRK01156        465 EKSNHIINHYNEKKSRLEEKIREIEIEVK  493 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.14  E-value=0.63  Score=52.10  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK  450 (458)
Q Consensus       415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q  450 (458)
                      -+-+-..|++.....+..++.||..|++++.++-+=
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av  658 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV  658 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344555667777778888888888888888887663

; GO: 0016021 integral to membrane

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.09  E-value=0.57  Score=50.26  Aligned_cols=41  Identities=17%  Similarity=0.450  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          283 EEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW  333 (458)
Q Consensus       283 ~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l  333 (458)
                      ++.+.+..|+.+|+          .++++|+.+++.|.+.+=.++...++.
T Consensus       332 ~dve~mn~Er~~l~----------r~l~~i~~~~d~l~k~vw~~~l~~~~~  372 (581)
T KOG0995|consen  332 EDVERMNLERNKLK----------RELNKIQSELDRLSKEVWELKLEIEDF  372 (581)
T ss_pred             HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44555556666663          467788888888888876555544433

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.09  E-value=0.52  Score=52.87  Aligned_cols=60  Identities=17%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~  301 (458)
                      ....|+..+..|++-+.++.+....-....+++       .+|++.+..|+..+..-.+.|+.+++.
T Consensus       369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~-------~kelE~k~sE~~eL~r~kE~Lsr~~d~  428 (1243)
T KOG0971|consen  369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKL-------QKELEKKNSELEELRRQKERLSRELDQ  428 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            455667777777777777766655444444444       344444444444444444444444333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.00  E-value=0.3  Score=45.46  Aligned_cols=91  Identities=19%  Similarity=0.265  Sum_probs=51.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE  283 (458)
Q Consensus       204 kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~  283 (458)
                      ++...++...+....|..++..|...   ..-+..+-..-+++...+..+......++.....+-.....++.|-.....
T Consensus        26 kL~~~ve~~ee~na~L~~e~~~L~~q---~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~  102 (193)
T PF14662_consen   26 KLQRSVETAEEGNAQLAEEITDLRKQ---LKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA  102 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555431   111333344455566666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHH
Q 012695          284 EHKRICEENEEFKK  297 (458)
Q Consensus       284 el~~l~~E~~~L~~  297 (458)
                      ++..++.++..|..
T Consensus       103 ~i~~Lqeen~kl~~  116 (193)
T PF14662_consen  103 EIETLQEENGKLLA  116 (193)
T ss_pred             HHHHHHHHHhHHHH
Confidence            66666666665543

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.97  E-value=0.46  Score=47.22  Aligned_cols=186  Identities=17%  Similarity=0.284  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG---KKVEEHKRICEENEEFKKRVKLQTINARDVERM  312 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~---~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm  312 (458)
                      ...+..+...+...+..+.+-.+.+..+...+-+.+..+.....   ...-.+..++.++.+|......-.+|++.=.++
T Consensus        57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~l  136 (294)
T COG1340          57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEEREL  136 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            44555555555555655555555555555555555555555444   233456777778888888888888888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhh
Q 012695          313 RRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKS  392 (458)
Q Consensus       313 n~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~  392 (458)
                      -..+..|.+.+.....+.+.- ..+.+    +-..++++-.....||.-+..|.-  +                    -+
T Consensus       137 vq~I~~L~k~le~~~k~~e~~-~~~~e----l~aei~~lk~~~~e~~eki~~la~--e--------------------aq  189 (294)
T COG1340         137 VQKIKELRKELEDAKKALEEN-EKLKE----LKAEIDELKKKAREIHEKIQELAN--E--------------------AQ  189 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--H--------------------HH
Confidence            777777777776555443221 11111    112223333333344433332210  0                    01


Q ss_pred             chhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          393 TLKPALE---SFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS  448 (458)
Q Consensus       393 ~ik~~L~---~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~  448 (458)
                      .++.-+.   +=++++...+...+++...+...++++.+.+....+++..++..+..+.
T Consensus       190 e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~  248 (294)
T COG1340         190 EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR  248 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222   2244445555555555556666666666555555555555555555443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.96  E-value=1.6  Score=53.06  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE  275 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~  275 (458)
                      +++.++++......    -..|+......+..++..+..+.
T Consensus       895 ~~~~~~~~~~~~~~----a~~y~~~~~~~L~qLE~~l~~L~  931 (1486)
T PRK04863        895 RVEEIREQLDEAEE----AKRFVQQHGNALAQLEPIVSVLQ  931 (1486)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhC
Confidence            55555555544433    23677777777777777777665

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.90  E-value=0.06  Score=54.45  Aligned_cols=64  Identities=16%  Similarity=0.282  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHH
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVER  321 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~-~Q~~S~~di~rmn~E~~~L~~  321 (458)
                      .....+...++..+..+...+++...+...+..++.+++..++ .+++|..+|.++......|++
T Consensus       221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            4444444444555555555555555555555555555555553 356666666666555555543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.85  E-value=1.1  Score=49.73  Aligned_cols=44  Identities=14%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          398 LESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ  441 (458)
Q Consensus       398 L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le  441 (458)
                      |+.++++|.+.-.+..--...|.+++.+.++.+.++.+++++|+
T Consensus       261 lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk  304 (1265)
T KOG0976|consen  261 LQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK  304 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            44445555444444444444444444444444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.85  E-value=0.17  Score=48.97  Aligned_cols=42  Identities=14%  Similarity=0.354  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK  349 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~  349 (458)
                      ++.++..++..+++.+..+..++..++..+.+.+..+...+.
T Consensus       111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~  152 (239)
T COG1579         111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA  152 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555544444443333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.84  E-value=1.1  Score=49.49  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFL  455 (458)
Q Consensus       413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~  455 (458)
                      ...+..++..++.+++.++.|..++..|+.+.+.+...|+-|.
T Consensus       201 ~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~  243 (617)
T PF15070_consen  201 QKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV  243 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3455578888888888999999999999998888888877664

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.81  E-value=1.4  Score=50.21  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKE  275 (458)
Q Consensus       237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~  275 (458)
                      ..++.++-.|+.++.-++.-.+..+.+++++...+..|+
T Consensus       297 ~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq  335 (1195)
T KOG4643|consen  297 ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQ  335 (1195)
T ss_pred             CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            455555555555555444444444555555544444443

>PRK09039 hypothetical protein; Validated

Probab=96.79  E-value=0.25  Score=50.66  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKL  344 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~  344 (458)
                      +|.++|.+++.|+..+..++..++..+++..+.+..+
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i  174 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI  174 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444433333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.79  E-value=1.6  Score=53.10  Aligned_cols=29  Identities=24%  Similarity=0.288  Sum_probs=13.9

Q ss_pred             HHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695          333 WESKTWDLDSKLGRKFKELEALSMECNQA  361 (458)
Q Consensus       333 l~~~~~~~e~~~~~~~~~lE~~v~~yN~~  361 (458)
                      +++++.+++..+++....++..+.++..+
T Consensus       803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l  831 (1822)
T KOG4674|consen  803 CESRIKELERELQKLKKKLQEKSSDLREL  831 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.77  E-value=0.63  Score=46.60  Aligned_cols=98  Identities=16%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHh-ccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 012695          212 VSEYVEELKKKVSEMEG-AMTGP-TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI-GKKVEEHKRI  288 (458)
Q Consensus       212 ~~e~~~~L~~e~~eLe~-l~~~~-~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el-~~~~~el~~l  288 (458)
                      +...+..|..+-.+||. +.... ..+..|.+++..|+.+....+.-+..+...+..++..++.-++-| ......+..+
T Consensus       111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l  190 (310)
T PF09755_consen  111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKL  190 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555 22111 235577777777777777777777777777777777777666555 4667888899


Q ss_pred             HHHHHHHHHHHHh---hcCCHHHH
Q 012695          289 CEENEEFKKRVKL---QTINARDV  309 (458)
Q Consensus       289 ~~E~~~L~~~v~~---Q~~S~~di  309 (458)
                      ..++..|+..++.   .+.|+.|+
T Consensus       191 ~~eKr~Lq~~l~~~~s~~~s~~d~  214 (310)
T PF09755_consen  191 EAEKRRLQEKLEQPVSAPPSPRDT  214 (310)
T ss_pred             HHHHHHHHHHHccccCCCCCcchH
Confidence            9999999999984   56677766

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.76  E-value=0.23  Score=44.53  Aligned_cols=94  Identities=20%  Similarity=0.308  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR  314 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~  314 (458)
                      +.+.++.+.+.|+.+..+++.=|..++.+...++..+..+...+......+.....              ....++.+++
T Consensus        15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------------~~~~~E~l~r   80 (143)
T PF12718_consen   15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------------RKSNAEQLNR   80 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHhHHHHHh
Confidence            34445555555555555555544555544444444444444443333222222221              1112225555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695          315 ELQAVERDIADAENARNEWESKTWDLDS  342 (458)
Q Consensus       315 E~~~L~~~i~~l~~~~~~l~~~~~~~e~  342 (458)
                      .++.|...++.....+....+++.+.+.
T Consensus        81 riq~LEeele~ae~~L~e~~ekl~e~d~  108 (143)
T PF12718_consen   81 RIQLLEEELEEAEKKLKETTEKLREADV  108 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555544444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.76  E-value=1.5  Score=49.85  Aligned_cols=121  Identities=12%  Similarity=0.180  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          212 VSEYVEELKKKVSEMEG-AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICE  290 (458)
Q Consensus       212 ~~e~~~~L~~e~~eLe~-l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~  290 (458)
                      ...++..|++.+.++.. +..-...++.+.......+.|...|..-+..+.............+++.+..+..+++.+..
T Consensus       676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~  755 (1200)
T KOG0964|consen  676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT  755 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence            33444455555544443 11111234455555555555555555555555554444444555555555555555555554


Q ss_pred             HHHHHHHHH-------Hh---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          291 ENEEFKKRV-------KL---QTINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       291 E~~~L~~~v-------~~---Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      .+..++...       ..   -.+++++.+++    ..|...|..+..++.++...
T Consensus       756 ~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l----~kLn~eI~~l~~kl~~~~~e  807 (1200)
T KOG0964|consen  756 SLHKLESQSNYFESELGSELFSQLTPEELERL----SKLNKEINKLSVKLRALREE  807 (1200)
T ss_pred             HHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHH----HHhhHHHHHHHHHHHHHHHH
Confidence            444443332       21   23566666543    34444455444444444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.73  E-value=0.55  Score=44.51  Aligned_cols=126  Identities=21%  Similarity=0.258  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNA---IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER  311 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~---yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r  311 (458)
                      |+..++.+...|+.++..|..   -+..+..+...+++.+..++-+-+.....+..++.|+.+|......   ++.||..
T Consensus        63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~---~i~evqQ  139 (201)
T PF13851_consen   63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES---AIQEVQQ  139 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            566777777777666655543   3344556666677777777777777777777777777777666442   3344433


Q ss_pred             HH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695          312 MR--------RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK  363 (458)
Q Consensus       312 mn--------~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~  363 (458)
                      .-        +....|...++..+.++.++-....=--.++......++.++...|....
T Consensus       140 k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~  199 (201)
T PF13851_consen  140 KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIK  199 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22        22223333333333333332222111112333445567777777776654

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.73  E-value=2.1  Score=51.17  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695          280 KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (458)
Q Consensus       280 ~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E  315 (458)
                      ....+...+..+..+++..+..-.++++....+..-
T Consensus       439 ~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~  474 (1201)
T PF12128_consen  439 ELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQA  474 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHH
Confidence            445556667777888888888888888887776643

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.70  E-value=1  Score=47.10  Aligned_cols=121  Identities=17%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ--------TINARDV  309 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q--------~~S~~di  309 (458)
                      .|+++.+.++.++...+.-+-.......+..+.|..+...+++.+.+-.+-..-..++-..+...        .++++|+
T Consensus        63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda  142 (420)
T COG4942          63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA  142 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhh
Confidence            34444444444444444444444444444444444444444443333311122222222222333        3455664


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695          310 E---RMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC  358 (458)
Q Consensus       310 ~---rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y  358 (458)
                      .   |+..=...+...+......+......+......++...+++..+...-
T Consensus       143 ~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq  194 (420)
T COG4942         143 QRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQ  194 (420)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   443333333333333333333333344444444555555555554443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.66  E-value=0.44  Score=49.69  Aligned_cols=6  Identities=17%  Similarity=0.202  Sum_probs=2.5

Q ss_pred             HHhcCC
Q 012695          362 MKRLKL  367 (458)
Q Consensus       362 ~~~l~l  367 (458)
                      +++.|.
T Consensus       124 ~~r~g~  129 (420)
T COG4942         124 LQRSGR  129 (420)
T ss_pred             HHhccC
Confidence            344443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.65  E-value=0.56  Score=47.39  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695          272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR--RELQAVERDIADAENARNEWESKTWDLDSKLGRKFK  349 (458)
Q Consensus       272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn--~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~  349 (458)
                      ..+..|+......+.+++.+++-|+..+..+..-...+.--+  +|++.|=.+++.+..+...|       +..+....+
T Consensus        82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL-------e~d~qs~lD  154 (319)
T PF09789_consen   82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL-------ERDLQSLLD  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            333344444444444445555555555444433222222111  66666666665555544444       444555777


Q ss_pred             HHHHHHH---HHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          350 ELEALSM---ECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEM  426 (458)
Q Consensus       350 ~lE~~v~---~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~  426 (458)
                      +.+.++.   .|-.-+.+|+  +++.+.||....   -|+  |+-     +|..=+.-.++++.+.++|..-+...+...
T Consensus       155 EkeEl~~ERD~yk~K~~RLN--~ELn~~L~g~~~---riv--DID-----aLi~ENRyL~erl~q~qeE~~l~k~~i~KY  222 (319)
T PF09789_consen  155 EKEELVTERDAYKCKAHRLN--HELNYILNGDEN---RIV--DID-----ALIMENRYLKERLKQLQEEKELLKQTINKY  222 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCCC---Ccc--cHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777763   3555555554  355556654321   222  322     244334445777888888888888888888


Q ss_pred             HHHHHHHH
Q 012695          427 AAKIEGKR  434 (458)
Q Consensus       427 ~~~i~~k~  434 (458)
                      +..++.++
T Consensus       223 K~~le~k~  230 (319)
T PF09789_consen  223 KSALERKR  230 (319)
T ss_pred             HHHHHhhc
Confidence            88777543

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.54  E-value=1.1  Score=48.91  Aligned_cols=113  Identities=12%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhcCCHH
Q 012695          243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVE---------------EHKRICEENEEFKKRVKLQTINAR  307 (458)
Q Consensus       243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~---------------el~~l~~E~~~L~~~v~~Q~~S~~  307 (458)
                      +..++..++.-++|....+.....++.+...++..+.....               +-..+-+...+|+..+..-.-+++
T Consensus       525 I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aa  604 (961)
T KOG4673|consen  525 IEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAA  604 (961)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555556666555555555555444433322111               112233344555554444433333


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHH
Q 012695          308 DV-ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS  355 (458)
Q Consensus       308 di-~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v  355 (458)
                      -. +.|..|+..|++.+..++.+.+++.+.+-.--.=+-|.++.+...+
T Consensus       605 rrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl  653 (961)
T KOG4673|consen  605 RREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL  653 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            33 3466889999999999999999988887665544555555554444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.42  Score=53.06  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=10.9

Q ss_pred             HHHHHhhHHHhHHhhHHHHHHHHH
Q 012695          332 EWESKTWDLDSKLGRKFKELEALS  355 (458)
Q Consensus       332 ~l~~~~~~~e~~~~~~~~~lE~~v  355 (458)
                      +...+..+++..+.+-.++++.++
T Consensus       803 e~~~~l~~~q~e~~~~keq~~t~~  826 (970)
T KOG0946|consen  803 EESTRLQELQSELTQLKEQIQTLL  826 (970)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.50  E-value=2  Score=48.08  Aligned_cols=138  Identities=17%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC------CCc---ceEecCCCCCCCc-
Q 012695          314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKL------ATE---IQYSLNSNGSTPS-  383 (458)
Q Consensus       314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l------~~d---~~~~ln~~~~~~~-  383 (458)
                      .|+..|++.+..+++.+..|...+.+.+..+.....++-..-+.-|.+..++.-      +.+   ..-.....++..+ 
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~  344 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG  344 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence            567888888888888888888888777777766555555444444444333321      111   1111111111111 


Q ss_pred             ----------cccccchh------hchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          384 ----------EVMGVDYK------STLKPALESFADDVKRSSVEK-------LEELISLQQQSSEMAAKIEGKRKRIDAL  440 (458)
Q Consensus       384 ----------ei~~~d~k------~~ik~~L~~l~~~i~~~~~~~-------~~e~~~l~~~l~~~~~~i~~k~~e~~~L  440 (458)
                                +++...|+      ..+++-|..|+..+.......       ..+...|.+++........+.+..+..|
T Consensus       345 ~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~L  424 (717)
T PF09730_consen  345 DYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISEL  424 (717)
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence                      22322232      234455555555444333322       3445566666666666555666678888


Q ss_pred             HHHHHHHHHHH
Q 012695          441 QFHINEVSAKK  451 (458)
Q Consensus       441 e~~~~~l~~q~  451 (458)
                      +..++.+..-.
T Consensus       425 E~ELr~l~~~A  435 (717)
T PF09730_consen  425 EKELRALSKLA  435 (717)
T ss_pred             HHHHHHHHHHH
Confidence            88777665443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.49  E-value=0.92  Score=44.04  Aligned_cols=96  Identities=20%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 012695          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIAD  325 (458)
Q Consensus       246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~  325 (458)
                      ...++.|.++-++........++..+..++.+.-..+.++..+.+.+++++..+ .-..+..+...++.|.+.+++.+..
T Consensus        29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~  107 (239)
T COG1579          29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINS  107 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666666667777777777777777777777777777777 5556677777788888887777777


Q ss_pred             HHHHHHHHHHHhhHHHh
Q 012695          326 AENARNEWESKTWDLDS  342 (458)
Q Consensus       326 l~~~~~~l~~~~~~~e~  342 (458)
                      ++.++.++......++-
T Consensus       108 le~el~~l~~~~~~l~~  124 (239)
T COG1579         108 LEDELAELMEEIEKLEK  124 (239)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777666655544443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.41  E-value=2.4  Score=47.98  Aligned_cols=15  Identities=20%  Similarity=0.253  Sum_probs=10.7

Q ss_pred             cchHhHHHHHHHhcC
Q 012695          109 TKFEEDLFVVLKSLS  123 (458)
Q Consensus       109 ~k~EeEv~~~lK~L~  123 (458)
                      .+..++|-.+.-.|.
T Consensus       152 ~~~~eei~kL~e~L~  166 (775)
T PF10174_consen  152 DKADEEIEKLQEMLQ  166 (775)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            556778888877774

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.38  E-value=1.7  Score=48.48  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       417 ~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      ..++..++.+...+.....++..++.++.+++.++
T Consensus       431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  465 (650)
T TIGR03185       431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL  465 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.38  E-value=2.6  Score=48.07  Aligned_cols=105  Identities=16%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695          260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      +.-+.+.+++++..+...+..++..-+.+..|++.|+..++.-.-+.+.-.+.+.+.+++-...+.+.....++..++.+
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn  492 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN  492 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555544455555555555666666666665555555554555555554444444444444444444444


Q ss_pred             HHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695          340 LDSKLGRKFKELEALSMECNQAMKR  364 (458)
Q Consensus       340 ~e~~~~~~~~~lE~~v~~yN~~~~~  364 (458)
                      +...+.+...++..+...+|.+..+
T Consensus       493 lnk~L~~r~~elsrl~a~~~elkeQ  517 (1195)
T KOG4643|consen  493 LNKSLNNRDLELSRLHALKNELKEQ  517 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555444444443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.34  E-value=0.67  Score=53.00  Aligned_cols=17  Identities=6%  Similarity=0.007  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 012695          348 FKELEALSMECNQAMKR  364 (458)
Q Consensus       348 ~~~lE~~v~~yN~~~~~  364 (458)
                      +.-.+..+.+|+.+-..
T Consensus       358 lnl~d~~~~ey~rlk~e  374 (1141)
T KOG0018|consen  358 LNLKDDQVEEYERLKEE  374 (1141)
T ss_pred             CCcchHHHHHHHHHHHH
Confidence            34445666666665433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.33  E-value=2.2  Score=46.80  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSA  449 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~  449 (458)
                      .+...+.+.+..+.....+-+..+..+...+..+..
T Consensus       397 ~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr  432 (569)
T PRK04778        397 KEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR  432 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.31  E-value=1  Score=50.60  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL  316 (458)
Q Consensus       241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~  316 (458)
                      .+..+-+.|.+|-+..+++++.+...++++.+.+++-+.....+-..+-....+.++++..+.-+..|+++.|.++
T Consensus       396 aql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L  471 (980)
T KOG0980|consen  396 AQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNL  471 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3344456788888888899999999999999999888888888888888888889999988888888888776554

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=2.5  Score=46.92  Aligned_cols=62  Identities=8%  Similarity=0.175  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          270 LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWE  334 (458)
Q Consensus       270 ~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~  334 (458)
                      +...++-|+++....+.+|...+.+.+..|..|+-   +|+.|+..++..-.+++.+..++.+++
T Consensus       438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt---~ie~~~~q~e~~isei~qlqarikE~q  499 (1118)
T KOG1029|consen  438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT---EIEEVTKQRELMISEIDQLQARIKELQ  499 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555554444444432   444444444443334444444443333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.26  E-value=1.9  Score=45.29  Aligned_cols=42  Identities=19%  Similarity=0.433  Sum_probs=26.7

Q ss_pred             hHhHHHHHHHhcCCCCccccccccCCCCCCChHHHHHHHHHHHHHH
Q 012695          111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIA  156 (458)
Q Consensus       111 ~EeEv~~~lK~L~YP~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~  156 (458)
                      ..++|+..|+.=||-.+|+---+.-|.+    -.|.+..-||.--+
T Consensus       109 c~~~I~~yL~engfd~pis~k~l~~PS~----k~F~~IFK~LY~~l  150 (622)
T COG5185         109 CQEEIYDYLKENGFDIPISIKFLKQPSQ----KGFIIIFKWLYLRL  150 (622)
T ss_pred             HHHHHHHHHHHcCCCcchhHHHhcCCcc----ccHHHHHHHHHhcc
Confidence            4567777777777777666666665533    34666667766544

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.24  E-value=1.5  Score=50.26  Aligned_cols=132  Identities=15%  Similarity=0.233  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 012695          242 EKCVLEEDLNKFNAII-----GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRREL  316 (458)
Q Consensus       242 ~~~~L~~D~~Kf~~yi-----~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~  316 (458)
                      +...++.++.|+..-+     .+.+.+.+.|++.++.++.+++..+.+-+.+..++.++ ..++..+  ...++.+..|.
T Consensus       782 k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~--k~~~~~~~~e~  858 (1141)
T KOG0018|consen  782 KRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKN--KSKFEKKEDEI  858 (1141)
T ss_pred             HHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHH--HHHHHHHHHHH
Confidence            3344555555554332     34455667777777777777666555555555555555 3333322  45566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCcccc
Q 012695          317 QAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVM  386 (458)
Q Consensus       317 ~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~  386 (458)
                      ....+.+..+...+..+.+.+.-       .-..+|....+-++++.+-+|+ ++.+.|  .+.+++++.
T Consensus       859 ~e~~k~~~~~~~~~tkl~~~i~~-------~es~ie~~~~er~~lL~~ckl~-~I~vPl--~~gs~~d~~  918 (1141)
T KOG0018|consen  859 NEVKKILRRLVKELTKLDKEITS-------IESKIERKESERHNLLSKCKLE-DIEVPL--SSGSMDDIV  918 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhh-------hhhHHHHHHHHHHHHHHHhhhc-cccccc--cCCCccccc
Confidence            66666666555555555554444       4445555566666666666653 333333  333554443

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=2.6  Score=44.03  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhccCCCCCCC--CCCCCCCHHHHHHHHHHHHHccC
Q 012695           63 SAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLISQLD  104 (458)
Q Consensus        63 ~~~~~I~~fL~~~~f~~s~--k~l~~PT~KdF~~If~fL~~~iD  104 (458)
                      ...-.|..|+..-||+..+  -+.-=|..-|....|-||...++
T Consensus        65 rla~siAq~ckdlgyrgD~gyqtfLypn~~dlR~ll~fLie~lp  108 (521)
T KOG1937|consen   65 RLANSIAQYCKDLGYRGDTGYQTFLYPNINDLRSLLIFLIEKLP  108 (521)
T ss_pred             HHHHHHHHHHHHcCCCcccchhheecCCcccHHHHHHHHHhhCC
Confidence            4566788999999998544  34456888888889999999997

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.93  E-value=2.6  Score=43.82  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 012695          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE  320 (458)
Q Consensus       241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~  320 (458)
                      .....+..-..-++.-+..++..+..++..+..++..+...+.++...+.+....+.-++..-+|..++.....+...++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~  209 (423)
T TIGR01843       130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQ  209 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            33444444444555555556666666666666666666666667777777777777777777788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHh
Q 012695          321 RDIADAENARNEWESKTWDLDS  342 (458)
Q Consensus       321 ~~i~~l~~~~~~l~~~~~~~e~  342 (458)
                      ..+..++.++..+...+...+.
T Consensus       210 ~~l~~~~~~l~~~~~~l~~~~~  231 (423)
T TIGR01843       210 GELGRLEAELEVLKRQIDELQL  231 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777666655554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.93  E-value=1.6  Score=49.07  Aligned_cols=41  Identities=10%  Similarity=0.208  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       259 ~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      .+.+--+++...|..+...-.....++..++.+++.|+..+
T Consensus       436 ~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl  476 (697)
T PF09726_consen  436 SSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL  476 (697)
T ss_pred             hhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333433333333344455555555555555543

; GO: 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.92  E-value=3.5  Score=45.30  Aligned_cols=98  Identities=9%  Similarity=0.239  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKERE----------IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (458)
Q Consensus       246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~e----------l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E  315 (458)
                      ......++..++..+......+...+..+...          ....+.+++.+......+...|..+...   ...+..+
T Consensus       308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~  384 (569)
T PRK04778        308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEE  384 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHH
Confidence            34455556666666666666666666666655          5566777788888888888888888776   4455567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695          316 LQAVERDIADAENARNEWESKTWDLDSKLGR  346 (458)
Q Consensus       316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~  346 (458)
                      .+.+.+.++.++....++.+.+..+...-..
T Consensus       385 leel~e~leeie~eq~ei~e~l~~Lrk~E~e  415 (569)
T PRK04778        385 LEEILKQLEEIEKEQEKLSEMLQGLRKDELE  415 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777666654443333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.91  E-value=2.5  Score=45.77  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695          428 AKIEGKRKRIDALQFHINEVSAKKFLFL  455 (458)
Q Consensus       428 ~~i~~k~~e~~~Le~~~~~l~~q~~~~~  455 (458)
                      ..+.+|..++..|-.+-.++-.+|+.++
T Consensus       342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll  369 (546)
T KOG0977|consen  342 QALNDKDAEIAKMREECQQLSVELQKLL  369 (546)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444455544444444444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.91  E-value=1.5  Score=40.95  Aligned_cols=43  Identities=9%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI  278 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el  278 (458)
                      ++.|+--+..|.+...|++.-|..++....++...+..+...+
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~   52 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL   52 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555666666666666666666666555555554443

>TIGR00634 recN DNA repair protein RecN

Probab=95.87  E-value=2.8  Score=45.97  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             HhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 012695          210 ENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL  246 (458)
Q Consensus       210 ~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L  246 (458)
                      .....++..++-++.+|+++.-.|+..+.|+.+...|
T Consensus       185 ~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L  221 (563)
T TIGR00634       185 QELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRL  221 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHH
Confidence            3444555666666777776544556666666665554

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.87  E-value=1.3  Score=39.78  Aligned_cols=55  Identities=29%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          209 KENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEK  269 (458)
Q Consensus       209 ~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~  269 (458)
                      .+.+.+.++.|+....++|      ..+..|..++..|+.|+.+.+.-+...........+
T Consensus        16 ~e~~e~~~K~le~~~~~~E------~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~   70 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKE------QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK   70 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3444555555555555555      367788888888888888888877777766555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=95.87  E-value=2.9  Score=43.93  Aligned_cols=78  Identities=15%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695          267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGR  346 (458)
Q Consensus       267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~  346 (458)
                      .++.+..+++-+...+..+.+-..+++.|+-          ++.+|+...-.|+...-.--++++..-..+-+.+..+++
T Consensus       388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLql----------elkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~Lsk  457 (527)
T PF15066_consen  388 IEKTLQNLQEALANTQKHLQESRNEKETLQL----------ELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSK  457 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            3555566666666666666666666666654          456677777777766655555556666666777777777


Q ss_pred             HHHHHHHH
Q 012695          347 KFKELEAL  354 (458)
Q Consensus       347 ~~~~lE~~  354 (458)
                      +-++++.+
T Consensus       458 KeeeverL  465 (527)
T PF15066_consen  458 KEEEVERL  465 (527)
T ss_pred             hHHHHHHH
Confidence            77777655

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.83  E-value=3.6  Score=44.75  Aligned_cols=166  Identities=13%  Similarity=0.176  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 012695          263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM-RRELQAVERDIADAENARNEWESKTWDLD  341 (458)
Q Consensus       263 k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm-n~E~~~L~~~i~~l~~~~~~l~~~~~~~e  341 (458)
                      .-..|.++...+.++.....++++.++..+..|+..+..-+-..-+...- -.|-......+.-+-..++..++++..+|
T Consensus       176 ~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE  255 (629)
T KOG0963|consen  176 LEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLE  255 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666677777777777777888877777766655544444444333 22233333344445555556666666655


Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          342 SKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ  421 (458)
Q Consensus       342 ~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~  421 (458)
                      ..+.....++    ..-|.....-+ +.|+.        ....++  +.+   -..+.+|..+|++......+++.....
T Consensus       256 ~e~e~L~~ql----~~~N~~~~~~~-~~~i~--------~~~~~L--~~k---d~~i~~L~~di~~~~~S~~~e~e~~~~  317 (629)
T KOG0963|consen  256 REVEQLREQL----AKANSSKKLAK-IDDID--------ALGSVL--NQK---DSEIAQLSNDIERLEASLVEEREKHKA  317 (629)
T ss_pred             HHHHHHHHHH----Hhhhhhhhhcc-CCchH--------HHHHHH--hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444443333    33343322211 11110        000001  111   234666778887777777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          422 QSSEMAAKIEGKRKRIDALQFHINE  446 (458)
Q Consensus       422 ~l~~~~~~i~~k~~e~~~Le~~~~~  446 (458)
                      +|..+...+..++.+++.|+.+++.
T Consensus       318 qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  318 QISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888888888887777777776654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.76  E-value=4.1  Score=44.90  Aligned_cols=42  Identities=17%  Similarity=0.268  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhccCCCCCC--CCCCCCCCHHHHHHHHHHHHHccC
Q 012695           63 SAIRAINAHLSSHSFHIA--FPLKQVPSVKDITDVIKFLISQLD  104 (458)
Q Consensus        63 ~~~~~I~~fL~~~~f~~s--~k~l~~PT~KdF~~If~fL~~~iD  104 (458)
                      ...-.|.+++.+.||+-.  ..++-=|+.+|...||-||...|-
T Consensus        66 r~~~~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekLP  109 (594)
T PF05667_consen   66 RVGTSLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKLP  109 (594)
T ss_pred             HHHHHHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHCC
Confidence            456678888899999744  445567889999999999999995

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.63  E-value=5.3  Score=46.39  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL  453 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~  453 (458)
                      +...+|++.-..+.-+-.+|-..+..|+..+..-+++|..
T Consensus      1689 ~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~ 1728 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALED 1728 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            3344555555555555566666666666666555555543

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.62  E-value=4.5  Score=44.36  Aligned_cols=46  Identities=13%  Similarity=0.169  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       407 ~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      +....+.++...+.+.++.+...=..-|..+..++..+..+...+.
T Consensus       386 ~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  386 EQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455555555555555555555555555555555543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.61  E-value=2.6  Score=41.52  Aligned_cols=69  Identities=13%  Similarity=0.285  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES  335 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~  335 (458)
                      +..-+.++..++.+....+.+++.+..++.+++..++..   .++|++.+.++..|+.+|+.++..+.+-++
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~---~~~i~~~~~eik~l~~eI~~~~~~I~~r~~  101 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL---QKEIDQSKAEIKKLQKEIAELKENIVERQE  101 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555444555555555555554444333   345666666666666666665555544433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.60  E-value=6.2  Score=45.86  Aligned_cols=24  Identities=46%  Similarity=0.553  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          243 KCVLEEDLNKFNAIIGELNMRKEK  266 (458)
Q Consensus       243 ~~~L~~D~~Kf~~yi~~~~~k~~~  266 (458)
                      ...+..++.++...+..++....+
T Consensus       528 ~~~~~~~~e~l~~~~e~~~~~~~~  551 (908)
T COG0419         528 KEELEEKLEKLENLLEELEELKEK  551 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Confidence            334444555555555544444444

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=95.54  E-value=5  Score=44.32  Aligned_cols=122  Identities=12%  Similarity=0.159  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 012695          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLV-------EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR  313 (458)
Q Consensus       241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l-------~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn  313 (458)
                      .....|......+++-++.++.+.....+.+       ..++++|-....+++.-..-...|++-|..|.-+-.--.--+
T Consensus       162 ~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we  241 (739)
T PF07111_consen  162 EALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWE  241 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHH
Confidence            3344455555555555555555543333333       344444555555555555556777888877765433333346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH-HHHHHHHhcC
Q 012695          314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM-ECNQAMKRLK  366 (458)
Q Consensus       314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~-~yN~~~~~l~  366 (458)
                      .|++.|.+++..++..++.+...+.=+.+    .+..+..++. .=..+++++.
T Consensus       242 ~Er~~L~~tVq~L~edR~~L~~T~ELLqV----RvqSLt~IL~LQEeEL~~Kvq  291 (739)
T PF07111_consen  242 PEREELLETVQHLQEDRDALQATAELLQV----RVQSLTDILTLQEEELCRKVQ  291 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCC
Confidence            78899999999999999988877666666    3344333332 2245566654

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.50  E-value=5.5  Score=44.56  Aligned_cols=129  Identities=14%  Similarity=0.179  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695          238 KLEKEKCVLEEDLNK-------FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (458)
Q Consensus       238 ~L~~~~~~L~~D~~K-------f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~  310 (458)
                      ++..++.+++-++..       |.+..+.++.+-.........+++-++..+.++..+..+-++++.+|+.|+--+.-.+
T Consensus       327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344444444444432       3333333333333333333444444555566666777777777777777776666666


Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          311 RMRRELQAVERDIADA-------ENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       311 rmn~E~~~L~~~i~~l-------~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      ......+..++.+..+       ...+..++.++.+..+-.++..-..+..+++||.++.+|.
T Consensus       407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir  469 (1265)
T KOG0976|consen  407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIR  469 (1265)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence            6655555544444444       4444455555555555556667788899999999988875

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=95.48  E-value=1.1  Score=42.68  Aligned_cols=63  Identities=24%  Similarity=0.348  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (458)
Q Consensus       239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~  301 (458)
                      ++++...+.+|..|.++-++.-+.+.++.+++...+++..+....|...+-++...|+++|+.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~  211 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES  211 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence            666677777777766666666666666666666666666666666666666666666666653

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.40  E-value=5.6  Score=44.05  Aligned_cols=30  Identities=17%  Similarity=0.327  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012695          428 AKIEGKRKRIDALQFHINEVSAKKFLFLQP  457 (458)
Q Consensus       428 ~~i~~k~~e~~~Le~~~~~l~~q~~~~~~~  457 (458)
                      ..+.+.+..++++..+...|++++..-..|
T Consensus       286 ~ELq~~qe~Lea~~qqNqqL~~qls~~~~~  315 (617)
T PF15070_consen  286 QELQEAQEHLEALSQQNQQLQAQLSLMALP  315 (617)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence            444556777777888888888887655444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.30  E-value=2.7  Score=39.69  Aligned_cols=85  Identities=25%  Similarity=0.334  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          250 LNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENA  329 (458)
Q Consensus       250 ~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~  329 (458)
                      +....+=|..+..+..+.......++..+..+..++..+..++..|++-++..++-  +.+.+..+...++..+......
T Consensus        63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~--eReeL~~kL~~~~~~l~~~~~k  140 (194)
T PF15619_consen   63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA--EREELQRKLSQLEQKLQEKEKK  140 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555555555556666666666777777777778888888877774  4555555555555555555555


Q ss_pred             HHHHHHH
Q 012695          330 RNEWESK  336 (458)
Q Consensus       330 ~~~l~~~  336 (458)
                      +..+...
T Consensus       141 i~~Lek~  147 (194)
T PF15619_consen  141 IQELEKQ  147 (194)
T ss_pred             HHHHHHH
Confidence            5544443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.24  E-value=0.39  Score=48.67  Aligned_cols=85  Identities=18%  Similarity=0.250  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKL  344 (458)
Q Consensus       265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~  344 (458)
                      ...+..+..++.|......+++.++.+.++|.+.+....-   +...+..+-...-+....+...+.+..+....++..+
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~---e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE---ELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555444443221   2222222333333333444444444444444444444


Q ss_pred             hhHHHHHH
Q 012695          345 GRKFKELE  352 (458)
Q Consensus       345 ~~~~~~lE  352 (458)
                      ....+.++
T Consensus       123 ~~~~~~L~  130 (314)
T PF04111_consen  123 EYASNQLD  130 (314)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=95.24  E-value=1  Score=43.58  Aligned_cols=46  Identities=9%  Similarity=0.164  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (458)
Q Consensus       265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~  310 (458)
                      ..++..+....+-.+....-+..+++.+..|...-.+--+|.+|++
T Consensus        94 s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfe  139 (333)
T KOG1853|consen   94 SQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFE  139 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHH
Confidence            3344444444444444445555566666666666566666666665

>PRK10869 recombination and repair protein; Provisional

Probab=95.23  E-value=6  Score=43.35  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCcc--------cccchHHHHHHHHHHHHHHhCCCCChhhhhHHH
Q 012695          130 KSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------FVENNSMYMYASDSYLNYIEGKDGDVDNIDKGF  201 (458)
Q Consensus       130 KS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~~--------~~~~~~~~~y~~~~Y~~fl~g~d~~~e~l~~e~  201 (458)
                      ||...-=|.+-++-.+-.+...||++.-..++..-....        +.....+...+..+|..|-.-..        ++
T Consensus       102 ~s~~~INg~~v~~~~l~~l~~~li~ihgQ~~~~~ll~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~--------~l  173 (553)
T PRK10869        102 RSRGFINGTPVPLSQLRELGQLLIQIHGQHAHQLLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCR--------DL  173 (553)
T ss_pred             cceEEECCeeccHHHHHHHHHhhhheeCcChHHHhcCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--------HH
Confidence            344444455666777777777777765443322211111        12223456666777777733221        11


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Q 012695          202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVL  246 (458)
Q Consensus       202 ~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L  246 (458)
                      . ++........+++..|+-++.+++...-.|+..+.|+.+...|
T Consensus       174 ~-~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L  217 (553)
T PRK10869        174 A-QHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRL  217 (553)
T ss_pred             H-HHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            1 2222223333444555555555555433445555555544443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.22  E-value=7  Score=44.16  Aligned_cols=51  Identities=10%  Similarity=0.314  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          285 HKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       285 l~~l~~E~~~L~~~v~~Q--~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      -+.|.+..+.+-..+..+  .+|.++ .+|..|.+.+...+..+...++++..+
T Consensus       609 Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k  661 (717)
T PF10168_consen  609 QEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKK  661 (717)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444332  367777 467777777777776666666555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.16  E-value=11  Score=45.90  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=16.9

Q ss_pred             HhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCC
Q 012695          336 KTWDLDSKLGRKFKELEALSMECNQAMKRLKL  367 (458)
Q Consensus       336 ~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l  367 (458)
                      +..+.+-.+.....+++..+..-+..+...++
T Consensus       369 ~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~  400 (1353)
T TIGR02680       369 RLDEEAGRLDDAERELRAAREQLARAAERAGL  400 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33333333444444555566666666666665

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK11281 hypothetical protein; Provisional

Probab=95.14  E-value=9.4  Score=45.17  Aligned_cols=81  Identities=17%  Similarity=0.231  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 012695          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKL------QTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS  342 (458)
Q Consensus       269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~------Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~  342 (458)
                      ++.+.+++.++..-.++++..++.+++++..+.      .+.|..+   +.+...++...+.+.+..+.++..++-..+.
T Consensus        80 ~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q---LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT  156 (1113)
T PRK11281         80 EETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ---LESRLAQTLDQLQNAQNDLAEYNSQLVSLQT  156 (1113)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            334444444444444455555555555442222      2333333   3334444455555555555555555555555


Q ss_pred             HHhhHHHHHH
Q 012695          343 KLGRKFKELE  352 (458)
Q Consensus       343 ~~~~~~~~lE  352 (458)
                      ...+.-..+.
T Consensus       157 ~PERAQ~~ls  166 (1113)
T PRK11281        157 QPERAQAALY  166 (1113)
T ss_pred             chHHHHHHHH
Confidence            4444444433

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.07  E-value=11  Score=45.70  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      ..+..........+...+.++...+.++..++.+...++..+..-.=|  ++-+...++.++.+.+..+........+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~--~a~~~~~eL~el~~ql~~~~~~a~~~~~~~  356 (1353)
T TIGR02680       279 DQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS--PAYQDAEELERARADAEALQAAAADARQAI  356 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555555555566666666666666666555444  444444555555555554444444333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.06  E-value=6.9  Score=43.16  Aligned_cols=10  Identities=20%  Similarity=0.278  Sum_probs=6.8

Q ss_pred             HHHHHHHhcc
Q 012695           65 IRAINAHLSS   74 (458)
Q Consensus        65 ~~~I~~fL~~   74 (458)
                      ++.|+-||.+
T Consensus        97 ~R~ll~fLie  106 (594)
T PF05667_consen   97 LRRLLMFLIE  106 (594)
T ss_pred             HHHHHHHHHH
Confidence            5666777766

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.04  E-value=9.5  Score=44.70  Aligned_cols=13  Identities=23%  Similarity=0.393  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 012695          312 MRRELQAVERDIA  324 (458)
Q Consensus       312 mn~E~~~L~~~i~  324 (458)
                      |+.+.+.|+.+.-
T Consensus       726 i~~e~e~L~~d~~  738 (1317)
T KOG0612|consen  726 IEAELEYLSNDYK  738 (1317)
T ss_pred             HHHHHHHHhhhhh
Confidence            4444444444443

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.95  E-value=7.3  Score=42.91  Aligned_cols=109  Identities=14%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVE  310 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~  310 (458)
                      .|....+.+..|...=+|+-+-+-....-+.++..++..-+.=++.+...+..++.|...|+..++..    +.-.+-|.
T Consensus       447 eLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~  526 (961)
T KOG4673|consen  447 ELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIE  526 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44455555666666666665544444444555544444333223444456666777777776666543    23456777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH
Q 012695          311 RMRRELQAVERDIADAENARNEWESKTWDLDSK  343 (458)
Q Consensus       311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~  343 (458)
                      +|+.+..+.++.........++++.+..-.+..
T Consensus       527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat  559 (961)
T KOG4673|consen  527 KHQAELTRQKDYYSNSRALAAALEAQALAEQAT  559 (961)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            888888777777777777777776665554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=94.94  E-value=2.1  Score=44.95  Aligned_cols=95  Identities=20%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 012695          235 EREKLEKEKCVLEEDLNKFNA--------IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA  306 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~--------yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~  306 (458)
                      .|.+-+.++..|+-.+.|+..        |+..++.|..-. ....++...|-.++++++.++..+.+|.+.      +.
T Consensus       405 ~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksv-sqclEmdk~LskKeeeverLQ~lkgelEka------t~  477 (527)
T PF15066_consen  405 HLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSV-SQCLEMDKTLSKKEEEVERLQQLKGELEKA------TT  477 (527)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH------HH
Confidence            466666777777777777763        444444443333 344566777788888888888877777633      34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          307 RDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      .-.+++++|++...+.+-.+.......++.
T Consensus       478 SALdlLkrEKe~~EqefLslqeEfQk~eke  507 (527)
T PF15066_consen  478 SALDLLKREKETREQEFLSLQEEFQKHEKE  507 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467788888888777776666655544433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.92  E-value=8  Score=43.17  Aligned_cols=33  Identities=12%  Similarity=0.189  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK  450 (458)
Q Consensus       418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q  450 (458)
                      ++++.+..+...+.+.+.+++.++.++..++.+
T Consensus       425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~  457 (650)
T TIGR03185       425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEA  457 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.91  E-value=4.3  Score=40.01  Aligned_cols=55  Identities=22%  Similarity=0.379  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      ++.++..++.-|+.+..++.+...++...++++...+.+++.++.++..++..|.
T Consensus        43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~   97 (265)
T COG3883          43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV   97 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444445555555555555555555555544443

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=94.87  E-value=8.2  Score=43.20  Aligned_cols=52  Identities=15%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 012695          394 LKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGK--------RKRIDALQFHINE  446 (458)
Q Consensus       394 ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k--------~~e~~~Le~~~~~  446 (458)
                      .++-+.+|..+|++.+....+ ...|.+.++.++..+..-        ++.|++|++++++
T Consensus       647 ~k~KIe~L~~eIkkkIe~av~-ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~  706 (762)
T PLN03229        647 LQEKIESLNEEINKKIERVIR-SSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQ  706 (762)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence            367899999999998888765 555666666666544321        2666667666653

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.83  E-value=7.7  Score=42.56  Aligned_cols=42  Identities=21%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~  454 (458)
                      .+++..+.+.++.+.+...+....+..|...-..-.+++..|
T Consensus       378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~  419 (560)
T PF06160_consen  378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKL  419 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555444444444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.78  E-value=3.8  Score=38.81  Aligned_cols=109  Identities=21%  Similarity=0.196  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLV---EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVER  311 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l---~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~r  311 (458)
                      .+..+..++..|..-+.+.+.-+..++.....+++.-   ...+..+...+.++..++-+.+-|..          .+..
T Consensus        49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~q----------r~~k  118 (201)
T PF13851_consen   49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQ----------RFEK  118 (201)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence            4556667777777777777777777776666655333   33444555556666666666555543          4567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH
Q 012695          312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSM  356 (458)
Q Consensus       312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~  356 (458)
                      +..||+.|.+...   ..+.++++++.-..+-+.+++..+...++
T Consensus       119 le~ErdeL~~kf~---~~i~evqQk~~~kn~lLEkKl~~l~~~lE  160 (201)
T PF13851_consen  119 LEQERDELYRKFE---SAIQEVQQKTGLKNLLLEKKLQALSEQLE  160 (201)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888877665   56667777777777777777765555544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.74  E-value=8.1  Score=43.85  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR-----VKLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~-----v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      .....+....+..++.....+++..+.+.+..+..     .+...++.+.+..++.++...+.....++.+.+.++..
T Consensus       189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~  266 (754)
T TIGR01005       189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKA  266 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444443332     12333444566666666666665555555555555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.72  E-value=2  Score=48.39  Aligned_cols=18  Identities=17%  Similarity=0.167  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 012695          347 KFKELEALSMECNQAMKR  364 (458)
Q Consensus       347 ~~~~lE~~v~~yN~~~~~  364 (458)
                      .-++|..++.+-|.+-..
T Consensus       697 ~~~~I~~~v~~ik~i~~~  714 (717)
T PF10168_consen  697 QGEEIDELVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            334444445444444333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=94.64  E-value=4.6  Score=39.18  Aligned_cols=18  Identities=22%  Similarity=0.287  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKF  253 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf  253 (458)
                      |..++..+..|+.+.+.+
T Consensus        54 L~q~etrnrdl~t~nqrl   71 (333)
T KOG1853|consen   54 LDQLETRNRDLETRNQRL   71 (333)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.54  E-value=1.4  Score=42.69  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC  358 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y  358 (458)
                      ++..++.++..|+..|..++..+......+.-+.-++...++++..+..+|
T Consensus        54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~  104 (230)
T PF10146_consen   54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY  104 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444554445554444444444444444555555554444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.54  E-value=6  Score=43.89  Aligned_cols=90  Identities=13%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 012695          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVERMRRELQAVERDIADAENARNEWESKTWDL  340 (458)
Q Consensus       265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~  340 (458)
                      ..+...+..+.+.......++..+..+++.|-.+|..+    .+-..|-..       |.      -..+++++.++.++
T Consensus       106 ~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~d-------ls------l~kLeelr~~L~~L  172 (660)
T KOG4302|consen  106 ESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESD-------LS------LEKLEELREHLNEL  172 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCccc-------cc------HHHHHHHHHHHHHH
Confidence            33334444444455555556666666666666666666    111111110       00      02333333334444


Q ss_pred             HhHHhhHHHHHHHHHHHHHHHHHhcCC
Q 012695          341 DSKLGRKFKELEALSMECNQAMKRLKL  367 (458)
Q Consensus       341 e~~~~~~~~~lE~~v~~yN~~~~~l~l  367 (458)
                      +-+.+..++.+...+...+.++.-||+
T Consensus       173 ~~ek~~Rlekv~~~~~~I~~l~~~Lg~  199 (660)
T KOG4302|consen  173 QKEKSDRLEKVLELKEEIKSLCSVLGL  199 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            444555777777777777888877765

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=94.54  E-value=1.3  Score=38.22  Aligned_cols=59  Identities=36%  Similarity=0.482  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENE  293 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~  293 (458)
                      +...|......|+.++.+|..++.....+.....++...-......+..++..+..++.
T Consensus        33 ~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~   91 (126)
T PF13863_consen   33 REEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELE   91 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56688888899999999999999999988887776666655555555555555544333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.51  E-value=9  Score=44.38  Aligned_cols=20  Identities=5%  Similarity=-0.243  Sum_probs=10.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCC
Q 012695           12 SALQPTPDLYGGNRFGGSRD   31 (458)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~r~   31 (458)
                      +.+|+++|-...++.+.+++
T Consensus        14 ~~~~~~~p~~~~~~~~~~~~   33 (1041)
T KOG0243|consen   14 QESPCRTPRETQRSNRDSSG   33 (1041)
T ss_pred             ccccCCCCCcCCCCccCCCC
Confidence            33555555555555555444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.50  E-value=4.4  Score=38.23  Aligned_cols=99  Identities=15%  Similarity=0.319  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          216 VEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       216 ~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      +..|..++.++..      .++.+..++..|..=-..-..-+..++..-..+++.|....+|+......+...+.....+
T Consensus        14 i~~L~n~l~elq~------~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~   87 (194)
T PF15619_consen   14 IKELQNELAELQR------KLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL   87 (194)
T ss_pred             HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444442      3445555555554333232334444555556666666667777766666666666666666


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695          296 KKRVKLQTINARDVERMRRELQAVERDI  323 (458)
Q Consensus       296 ~~~v~~Q~~S~~di~rmn~E~~~L~~~i  323 (458)
                      ...+....   +++.+.+.+...|++-+
T Consensus        88 ~~klk~~~---~el~k~~~~l~~L~~L~  112 (194)
T PF15619_consen   88 ERKLKDKD---EELLKTKDELKHLKKLS  112 (194)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            55554432   24445555555554433

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.41  E-value=3.5  Score=36.96  Aligned_cols=55  Identities=16%  Similarity=0.204  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK  297 (458)
Q Consensus       243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~  297 (458)
                      ...|..++.+++.-+...+.+....+.+...++.++......++...++..+++.
T Consensus        68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~  122 (151)
T PF11559_consen   68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333344444444444333444444444444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=94.30  E-value=2.1  Score=38.39  Aligned_cols=35  Identities=14%  Similarity=0.044  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh
Q 012695          312 MRRELQAVERDIADAENARNEWESKTWDLDSKLGR  346 (458)
Q Consensus       312 mn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~  346 (458)
                      ||.|.+.+.-.++.+..+.+.+++.+..+....++
T Consensus         1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e   35 (144)
T PRK14011          1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKME   35 (144)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555554443333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.21  E-value=9.1  Score=43.36  Aligned_cols=65  Identities=14%  Similarity=0.248  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      ++.++.+.-+.+.-.+|....+..+.+.-..+-.+.....+.++..+.-+.+.+.++..|...|.
T Consensus       412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le  476 (980)
T KOG0980|consen  412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLE  476 (980)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            45555555556666666666556665555555555555555555444444455555555544443

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.71  Score=49.92  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhccCCCC
Q 012695           39 SRPSSIGMGRASAAD-LYTDRSHQSSAIRAINAHLSSHSFH   78 (458)
Q Consensus        39 sr~s~~g~~~~~DpR-pl~DK~~q~~~~~~I~~fL~~~~f~   78 (458)
                      ||.-|.|.||-|-.| --+-.+-..+..++|-+=|..-|++
T Consensus       143 sR~RS~g~GGwSq~RY~R~vh~av~~~~reIee~L~~agld  183 (652)
T COG2433         143 SRGRSLGPGGWSQNRYRRRVHGAVKRVVREIEEKLDEAGLD  183 (652)
T ss_pred             EecccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            566666666543111 1122346677778888888887753

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.06  E-value=6.9  Score=43.59  Aligned_cols=129  Identities=18%  Similarity=0.249  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E  315 (458)
                      .......+..|..+..++..-+..+......+..++..+++.+.........+..+...+...+...+=.+.|+.+   .
T Consensus       491 ~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~---~  567 (698)
T KOG0978|consen  491 RIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQ---S  567 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            3344555566666666666666666666666666666666666666677777777777777777777777777654   6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhh---HHHHHHHHHHHHHHHHHhcCC
Q 012695          316 LQAVERDIADAENARNEWESKTWDLDSKLGR---KFKELEALSMECNQAMKRLKL  367 (458)
Q Consensus       316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~---~~~~lE~~v~~yN~~~~~l~l  367 (458)
                      .+.|+-.++.....+.+++..+.+...++..   +...++.=+...|.-+.+++-
T Consensus       568 ~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~  622 (698)
T KOG0978|consen  568 LEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK  622 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6777777777788888888887777766643   335667777777777777663

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.04  E-value=11  Score=41.14  Aligned_cols=80  Identities=20%  Similarity=0.326  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH-----HHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHhhH
Q 012695          276 REIGKKVEEHKRICEENEEFKKRVKLQTINAR-----DVER-------MRRELQAVERDIADAE----NARNEWESKTWD  339 (458)
Q Consensus       276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~-----di~r-------mn~E~~~L~~~i~~l~----~~~~~l~~~~~~  339 (458)
                      .+++..+.-+..++.|++.|..++..++=+..     +++.       +-.++..|..+|+.++    ..++.+..++..
T Consensus       242 ~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~  321 (629)
T KOG0963|consen  242 TELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISA  321 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566667777777777777766654432     3332       3345555555554333    334444445555


Q ss_pred             HHhHHhhHHHHHHHHH
Q 012695          340 LDSKLGRKFKELEALS  355 (458)
Q Consensus       340 ~e~~~~~~~~~lE~~v  355 (458)
                      +|..+..+...++.+-
T Consensus       322 le~~l~~~~~~leel~  337 (629)
T KOG0963|consen  322 LEKELKAKISELEELK  337 (629)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6655555555444443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.99  E-value=3.1  Score=43.53  Aligned_cols=16  Identities=25%  Similarity=0.604  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHhC
Q 012695          174 SMYMYASDSYLNYIEG  189 (458)
Q Consensus       174 ~~~~y~~~~Y~~fl~g  189 (458)
                      -.|+|..+.|-+-+-.
T Consensus       278 rVWDYAGDnYVhRl~~  293 (493)
T KOG0804|consen  278 RVWDYAGDNYVHRLPQ  293 (493)
T ss_pred             eeeecccchhhhhccc
Confidence            4689999999877653

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=93.96  E-value=11  Score=40.92  Aligned_cols=48  Identities=10%  Similarity=0.203  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          396 PALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEV  447 (458)
Q Consensus       396 ~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l  447 (458)
                      ..|.++..+......    +....+..+..+...++..+..+.+++.++...
T Consensus       372 ~~Lqql~~Eae~Ak~----ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa  419 (522)
T PF05701_consen  372 KALQQLSSEAEEAKK----EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA  419 (522)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555543322    222334444444444455555555555554443

Several sequences in this family are described as being myosin heavy chain-like.

>PF13166 AAA_13: AAA domain

Probab=93.96  E-value=13  Score=41.69  Aligned_cols=61  Identities=21%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhH---HhhHHHHHHHHHHHHHHHHHhcCC
Q 012695          307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSK---LGRKFKELEALSMECNQAMKRLKL  367 (458)
Q Consensus       307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~---~~~~~~~lE~~v~~yN~~~~~l~l  367 (458)
                      .+++....+...+.+.+..+...+..+...+...+..   +...+...+..++.+|..+..+|.
T Consensus       410 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~  473 (712)
T PF13166_consen  410 EDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGF  473 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            3444444455555555555555555555444444443   333445567788889999998864

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=93.90  E-value=1.3  Score=40.57  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695          274 KEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI  323 (458)
Q Consensus       274 l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i  323 (458)
                      +...+...+.+++.++.....|+.  ....+|++++.++..+...+.+..
T Consensus       114 l~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~~~~~~~~~k~w  161 (169)
T PF07106_consen  114 LREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKLEKEYKKWRKEW  161 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            334444444455555555556655  555689999998887777665544

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.85  E-value=0.35  Score=45.51  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      +..|+.+...|+..+.....-+.....-++.+...+..++-++...+..+..++.|+.+|-.+.
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444455555555555555556665554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.82  E-value=3.3  Score=36.01  Aligned_cols=14  Identities=29%  Similarity=0.693  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHH
Q 012695          308 DVERMRRELQAVER  321 (458)
Q Consensus       308 di~rmn~E~~~L~~  321 (458)
                      ++..+..+...|+.
T Consensus        69 ~~~~L~~el~~l~~   82 (120)
T PF12325_consen   69 EVEELEQELEELQQ   82 (120)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=93.82  E-value=7.5  Score=38.43  Aligned_cols=64  Identities=17%  Similarity=0.372  Sum_probs=44.5

Q ss_pred             CCCC--CCCCCCCCCCHHHHHHHHHHHHHccCCCC----CcchHhHHHHHHHhcC------CCCccccccccCCCC
Q 012695           75 HSFH--IAFPLKQVPSVKDITDVIKFLISQLDYPS----TTKFEEDLFVVLKSLS------CPFKINKSTLRSPNS  138 (458)
Q Consensus        75 ~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~~~----~~k~EeEv~~~lK~L~------YP~~IsKS~L~avG~  138 (458)
                      -|||  |||-.+++|.-.=--.|..||..++||..    +-.-|++=+.|+|...      .-..+|---|++..|
T Consensus         3 LGypr~iSmenFrtPNF~LVAeiL~WLv~rydP~~~i~~~i~tE~dRV~Fik~v~~~~~tKa~IKLN~KkLY~ADG   78 (267)
T PF10234_consen    3 LGYPRLISMENFRTPNFELVAEILRWLVKRYDPDADIPGDIDTEQDRVFFIKSVAEFMATKARIKLNPKKLYQADG   78 (267)
T ss_pred             CCCCCCCcHHHcCCCChHHHHHHHHHHHHHcCCCCCCCCcCCcHHHHHHHHHHHHHHHHHHhheeecHHHHHHhhH
Confidence            4898  78888899988888999999999999864    3333555566666543      122455555666555

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.82  E-value=17  Score=42.37  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEV  447 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l  447 (458)
                      ..+..+...+..+...++..+..+..++..+..+
T Consensus       410 ~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  443 (908)
T COG0419         410 EELEELEKELEELERELEELEEEIKKLEEQINQL  443 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555555553

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=93.81  E-value=18  Score=42.62  Aligned_cols=27  Identities=26%  Similarity=0.200  Sum_probs=14.6

Q ss_pred             HHHHHHhccCCCCCCCCCCCCCCHHHHHH
Q 012695           66 RAINAHLSSHSFHIAFPLKQVPSVKDITD   94 (458)
Q Consensus        66 ~~I~~fL~~~~f~~s~k~l~~PT~KdF~~   94 (458)
                      .+|+++=..-+||-..+  -|+..||++.
T Consensus       291 ~KIm~hk~~l~FP~~~~--VSeeakdLI~  317 (1317)
T KOG0612|consen  291 GKIMNHKESLSFPDETD--VSEEAKDLIE  317 (1317)
T ss_pred             HHHhchhhhcCCCcccc--cCHHHHHHHH
Confidence            45566544556772222  4566777654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.44  E-value=16  Score=41.09  Aligned_cols=59  Identities=24%  Similarity=0.324  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK  297 (458)
Q Consensus       239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~  297 (458)
                      .++....+.+-++|+...|..+...++.+.+...+|+.|.+..++++.....+...|+.
T Consensus       648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~  706 (970)
T KOG0946|consen  648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKD  706 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666677777777777766666666666655555555555444444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=93.44  E-value=9.5  Score=38.38  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAII-GELNMRKEKMEKLVEEKEREIGK-KVEEHKRICEENEEFKKRVKLQTINARDVERM  312 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi-~~~~~k~~~~e~~l~~l~~el~~-~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm  312 (458)
                      ++..|.+++..|..++.+=+.++ +.+..+..++...-..++..+++ .+..+..+...+.+|.......   ....+++
T Consensus        85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~---q~~le~L  161 (310)
T PF09755_consen   85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAK---QEELERL  161 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---HHHHHHH
Confidence            45556666666655555554443 33344444444444444444433 2233344444444443332111   1234444


Q ss_pred             HHHHHHHHHHHH
Q 012695          313 RRELQAVERDIA  324 (458)
Q Consensus       313 n~E~~~L~~~i~  324 (458)
                      ..|...|++.++
T Consensus       162 r~EKVdlEn~LE  173 (310)
T PF09755_consen  162 RREKVDLENTLE  173 (310)
T ss_pred             HHHHHhHHHHHH
Confidence            444444444443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.43  E-value=5.1  Score=35.23  Aligned_cols=93  Identities=18%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMR--------KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINAR  307 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k--------~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~  307 (458)
                      ...+......+..|+.+-..+....+.+        ... -+.|..++.++.....++..++.+....+..+....-|. 
T Consensus        19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw-   96 (132)
T PF07926_consen   19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEASW-   96 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence            4445555666677777666655555544        222 244444445554444445555544444444443333332 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          308 DVERMRRELQAVERDIADAENARNEWES  335 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~  335 (458)
                           ..++..|.+.+..++.+++++..
T Consensus        97 -----~~qk~~le~e~~~~~~r~~dL~~  119 (132)
T PF07926_consen   97 -----EEQKEQLEKELSELEQRIEDLNE  119 (132)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22334444444444444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.41  E-value=5.5  Score=35.56  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~  298 (458)
                      ++..+.....+..|...-++.+..++..+..+...+..+..+|.....+...+.++....+.+
T Consensus        33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k   95 (140)
T PF10473_consen   33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK   95 (140)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444555555555555555555555555555555555555444444444444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.35  E-value=1.6  Score=44.33  Aligned_cols=29  Identities=10%  Similarity=0.189  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      +..++..+++.+...++.....++.+++.
T Consensus       107 ~l~~~~~e~~sl~~q~~~~~~~L~~L~kt  135 (314)
T PF04111_consen  107 ELIEFQEERDSLKNQYEYASNQLDRLRKT  135 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455566777777777777777766653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.25  E-value=4.2  Score=35.35  Aligned_cols=20  Identities=10%  Similarity=0.395  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 012695          314 RELQAVERDIADAENARNEW  333 (458)
Q Consensus       314 ~E~~~L~~~i~~l~~~~~~l  333 (458)
                      .+...|+..+..++.+.+.+
T Consensus        68 ~~~~~L~~el~~l~~ry~t~   87 (120)
T PF12325_consen   68 KEVEELEQELEELQQRYQTL   87 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=93.23  E-value=7.9  Score=36.87  Aligned_cols=132  Identities=21%  Similarity=0.264  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI-NARDVERMR  313 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~-S~~di~rmn  313 (458)
                      .+..+..++..+..|+..++.-..++-.+.+++...+..++..-+.....+++....+.....+..+-+- ..+.++.-|
T Consensus        70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~AN  149 (207)
T PF05010_consen   70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKAN  149 (207)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777888888888888888888888888887777777655444443343333333333333222221 123455556


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          314 RELQAVERD----IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       314 ~E~~~L~~~----i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      .|++.+.+.    +..+...+...+-++..++..+..+..+.+.+..-|-.+..+++
T Consensus       150 eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~  206 (207)
T PF05010_consen  150 EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG  206 (207)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            665555444    34566666666667777777787888888888888877776654

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=93.16  E-value=23  Score=42.10  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHH
Q 012695          311 RMRRELQAVERDIADAENARNEWESKTWDLDSKL  344 (458)
Q Consensus       311 rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~  344 (458)
                      .|...+..++..+.+++.+...+.+...++....
T Consensus       315 ~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~  348 (1294)
T KOG0962|consen  315 EMGEKLRELEREISDLNEERSSLIQLKTELDLEQ  348 (1294)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666666666655555555544433

>PF09762 KOG2701: Coiled-coil domain-containing protein (DUF2037); InterPro: IPR019159 This entry represents a family of coiled-coil-containing proteins conserved from plants to vertebrates

Probab=93.14  E-value=2.9  Score=38.96  Aligned_cols=84  Identities=17%  Similarity=0.388  Sum_probs=61.9

Q ss_pred             HHHHHHhccCCCC-CCCCCCCCCCHHHHHHH---HHHHHHccCCCC------------Ccc--hHhHHHHHHHhcCCCCc
Q 012695           66 RAINAHLSSHSFH-IAFPLKQVPSVKDITDV---IKFLISQLDYPS------------TTK--FEEDLFVVLKSLSCPFK  127 (458)
Q Consensus        66 ~~I~~fL~~~~f~-~s~k~l~~PT~KdF~~I---f~fL~~~iD~~~------------~~k--~EeEv~~~lK~L~YP~~  127 (458)
                      +.|++.|..-||. ..+++     -..|-.|   +.|.....++.+            +.|  .-+.|...|+.++|||.
T Consensus         3 ~~I~~~L~~aGY~RaRv~~-----Ls~fDkivGGi~W~i~~~~~~v~~dllf~E~~~i~~Ki~~~ekIv~~L~~m~CP~~   77 (182)
T PF09762_consen    3 QEILDLLSAAGYHRARVKS-----LSPFDKIVGGITWCITRCNVDVDVDLLFQENSTIGQKIALCEKIVEALPKMKCPHR   77 (182)
T ss_pred             HHHHHHHHHcCccHHHhcC-----CChHHHHHhHHHHHHHhcCCCCCccchhcccccHHHHHHHHHHHHHHHHhCCCCCC
Confidence            6899999999997 33443     2344444   677777666321            222  24779999999999999


Q ss_pred             cccccccCCCCCCChHHHHHHHHHHHHHHhh
Q 012695          128 INKSTLRSPNSPHNWPAYLALIHWLVQIASY  158 (458)
Q Consensus       128 IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~  158 (458)
                      |+--+|.  |  -.+|++.-++.|||.=+.-
T Consensus        78 l~phQi~--g--lDf~~i~PVvqWLvkr~~e  104 (182)
T PF09762_consen   78 LEPHQIQ--G--LDFIHIFPVVQWLVKRVLE  104 (182)
T ss_pred             CCHHHHh--c--CCHHHHHHHHHHHHHHHHH
Confidence            9999887  2  2899999999999987543

It includes Drosophila fidipidine, whose function is unknown.

>TIGR00634 recN DNA repair protein RecN

Probab=93.12  E-value=11  Score=41.35  Aligned_cols=18  Identities=11%  Similarity=0.252  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 012695          348 FKELEALSMECNQAMKRL  365 (458)
Q Consensus       348 ~~~lE~~v~~yN~~~~~l  365 (458)
                      +++++.-+..++.+.++.
T Consensus       303 L~ele~RL~~l~~LkrKy  320 (563)
T TIGR00634       303 LNEIEERLAQIKRLKRKY  320 (563)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            344555555555555543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF14735 HAUS4: HAUS augmin-like complex subunit 4

Probab=93.10  E-value=9.2  Score=37.24  Aligned_cols=110  Identities=14%  Similarity=0.151  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 012695          252 KFNAIIGELNMRKEKMEKLVEEKE----REIG-----KKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD  322 (458)
Q Consensus       252 Kf~~yi~~~~~k~~~~e~~l~~l~----~el~-----~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~  322 (458)
                      +|..|...+....+-+++-|.+.+    .+++     -.....+.+...+.-++..|-.-.+|++.|.-++.=++.|...
T Consensus       107 q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~TYTpe~v~Al~~Ir~~L~~~  186 (238)
T PF14735_consen  107 QFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDTYTPETVPALRKIRDHLEEA  186 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhHHHHHHHHHHHHHH
Confidence            455555555555555555444332    2221     2234456666677777788888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695          323 IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL  365 (458)
Q Consensus       323 i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l  365 (458)
                      +...+.++....+.....|.    .-.+++.++.+|..+...|
T Consensus       187 ~~~~e~~~~~a~~~L~~Ye~----lg~~F~~ivreY~~l~~~i  225 (238)
T PF14735_consen  187 IEELEQELQKARQRLESYEG----LGPEFEEIVREYTDLQQEI  225 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----ccHhHHHHHHHHHHHHHHH
Confidence            99999999999888777665    5556788899998887765

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=93.06  E-value=24  Score=41.88  Aligned_cols=24  Identities=8%  Similarity=0.195  Sum_probs=12.2

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHH
Q 012695          303 TINARDVERMRRELQAVERDIADA  326 (458)
Q Consensus       303 ~~S~~di~rmn~E~~~L~~~i~~l  326 (458)
                      .++.+....++.|+..++..++.+
T Consensus       169 ~l~~a~~~~lqae~~~l~~~~~~l  192 (1109)
T PRK10929        169 PLAQAQLTALQAESAALKALVDEL  192 (1109)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555544433

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=93.01  E-value=14  Score=38.94  Aligned_cols=40  Identities=18%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695          300 KLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       300 ~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      -...++++|+..+.-..-.|..+|.+++.+...++..+.+
T Consensus       316 ve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~  355 (554)
T KOG4677|consen  316 VELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT  355 (554)
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence            3456777777777777777777666666666555554433

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.01  E-value=22  Score=41.37  Aligned_cols=77  Identities=22%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERM  312 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rm  312 (458)
                      ++.+++....+++...-....-..+..++.+++.+|.....++...++++.+++.....-...|..|.-|..-+.+.
T Consensus       457 l~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~  533 (1041)
T KOG0243|consen  457 LENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR  533 (1041)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444433333334555556666666666666666666666666555555555577776665555444

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=92.87  E-value=16  Score=40.97  Aligned_cols=140  Identities=17%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          205 LEKEKENVSEYVEELKKKVSEMEGAMTGP------TEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREI  278 (458)
Q Consensus       205 l~~~~~~~~e~~~~L~~e~~eLe~l~~~~------~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el  278 (458)
                      |..+...+..+++.|.+.+.+-|.-....      -.+..|+.-+..|+..++.-..-.+.++.+.+++-+.++..++|-
T Consensus       392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En  471 (861)
T PF15254_consen  392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN  471 (861)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence            44455555556666666555544422111      157788888888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHH
Q 012695          279 GKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKE  350 (458)
Q Consensus       279 ~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~  350 (458)
                      ......+.+-..+..+.+++.+      .+..|++.|.++.--.+..+.-++++.+.....+.+.+..+=.+
T Consensus       472 k~~~~~~~ekd~~l~~~kq~~d------~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaE  537 (861)
T PF15254_consen  472 KRLRKMFQEKDQELLENKQQFD------IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAE  537 (861)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHH
Confidence            7766666666666665555433      35667777777666666666666666666655555555443333

>PF13514 AAA_27: AAA domain

Probab=92.83  E-value=26  Score=41.74  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=18.7

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 012695          133 LRSPNSPHNWPAYLALIHWLVQIASYNYH  161 (458)
Q Consensus       133 L~avG~pHsWP~~Lg~L~WLv~l~~~~~~  161 (458)
                      ..+.|.| ..|  -.|+.||...-.....
T Consensus       591 ~~~~g~p-~~p--~~~~~Wl~~~~~~~~~  616 (1111)
T PF13514_consen  591 WAAAGLP-LSP--AEMRDWLARREAALEA  616 (1111)
T ss_pred             HhhcCCC-CCh--HHHHHHHHHHHHHHHH
Confidence            4566766 457  8999999988765543

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.73  E-value=16  Score=39.13  Aligned_cols=33  Identities=12%  Similarity=0.177  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (458)
Q Consensus       269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~  301 (458)
                      ..+..++.++...+.++..++.....|+..+..
T Consensus       204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~  236 (498)
T TIGR03007       204 SEISEAQEELEAARLELNEAIAQRDALKRQLGG  236 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            455555566666666666666666667666653

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.71  E-value=11  Score=37.13  Aligned_cols=41  Identities=27%  Similarity=0.254  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHH
Q 012695          314 RELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEAL  354 (458)
Q Consensus       314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~  354 (458)
                      ++...-+..+..++.++......+..++..+.+...+||..
T Consensus        88 hdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen   88 HDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444555555555555555555555555555543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.71  E-value=17  Score=39.25  Aligned_cols=76  Identities=12%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKERE---IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR  313 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~e---l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn  313 (458)
                      .++.+...|.+++..++---..+-+...+++...-.+++.   |...+.|.+-++-++++|...+.--+.-.+|..+++
T Consensus       146 ~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk  224 (772)
T KOG0999|consen  146 AVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLK  224 (772)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555433332233333344444333333322   334466777777788888776666665566665553

>PRK11281 hypothetical protein; Provisional

Probab=92.64  E-value=27  Score=41.47  Aligned_cols=83  Identities=6%  Similarity=0.008  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHH
Q 012695          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-----QTINARDVERMRRELQAVE  320 (458)
Q Consensus       246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~-----Q~~S~~di~rmn~E~~~L~  320 (458)
                      |++.+...++-..+.+.....+...+...+...++.+..+.+......+++.++.+     -.+|.+....++.|...++
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~  205 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN  205 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence            44444444444455555666666666666666666666667777777777777765     3467777888888887777


Q ss_pred             HHHHHHHH
Q 012695          321 RDIADAEN  328 (458)
Q Consensus       321 ~~i~~l~~  328 (458)
                      ..++..+.
T Consensus       206 ~~~~~~~~  213 (1113)
T PRK11281        206 AQNDLQRK  213 (1113)
T ss_pred             HHHHHHHH
Confidence            66554433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=92.62  E-value=20  Score=40.01  Aligned_cols=57  Identities=12%  Similarity=0.116  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          395 KPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       395 k~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      ...+.+.+-++.+....++.++.+.+..+..+...+.+.+.+++.+..+...+++.+
T Consensus       554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~  610 (698)
T KOG0978|consen  554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEEL  610 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555666666666666666666665555555554443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=92.60  E-value=0.034  Score=62.53  Aligned_cols=43  Identities=9%  Similarity=0.158  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhccC-CCCCCCCCC-------CCCCHHHHHHHHHHHHHcc
Q 012695           61 QSSAIRAINAHLSSH-SFHIAFPLK-------QVPSVKDITDVIKFLISQL  103 (458)
Q Consensus        61 q~~~~~~I~~fL~~~-~f~~s~k~l-------~~PT~KdF~~If~fL~~~i  103 (458)
                      -..+++.|.+|..+. |.+++.-++       ..|...+...+...|..+-
T Consensus        72 Lk~l~~~i~~yy~e~L~~~i~~~~~Pd~~~Iae~~d~~El~kLL~LlLgcA  122 (713)
T PF05622_consen   72 LKKLLRNIKSYYQEELGQQISEMPLPDLQAIAENSDPEELKKLLQLLLGCA  122 (713)
T ss_dssp             HHHHHHHHHHHHHTTT-----TTT---HHHHHTT--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCcCcCCCCCHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            346788888998873 434331111       4567777766766666644

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=92.38  E-value=5.5  Score=35.17  Aligned_cols=36  Identities=11%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          416 LISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      ...+++.++.+...+..++.+++.++..+.++.++.
T Consensus       103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~  138 (140)
T PRK03947        103 KEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334555555566666666666666666666665543

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.38  E-value=16  Score=38.36  Aligned_cols=28  Identities=18%  Similarity=0.083  Sum_probs=17.5

Q ss_pred             HhHHHHHHHhcCCCCccccccccCCCCC
Q 012695          112 EEDLFVVLKSLSCPFKINKSTLRSPNSP  139 (458)
Q Consensus       112 EeEv~~~lK~L~YP~~IsKS~L~avG~p  139 (458)
                      -..|-.-.|.||||..+.=-.+--|..+
T Consensus        67 a~siAq~ckdlgyrgD~gyqtfLypn~~   94 (521)
T KOG1937|consen   67 ANSIAQYCKDLGYRGDTGYQTFLYPNIN   94 (521)
T ss_pred             HHHHHHHHHHcCCCcccchhheecCCcc
Confidence            4667778888888886554333333443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.36  E-value=7.1  Score=40.98  Aligned_cols=38  Identities=24%  Similarity=0.345  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      ..++......++++.+++..+...+.+++.++++++.|
T Consensus       371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l  408 (493)
T KOG0804|consen  371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL  408 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444455555555555555555555444444

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=2.6  Score=45.71  Aligned_cols=29  Identities=7%  Similarity=0.052  Sum_probs=20.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhccCCCCC
Q 012695           51 AADLYTDRSHQSSAIRAINAHLSSHSFHI   79 (458)
Q Consensus        51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~~   79 (458)
                      |..+|.=.|...-.--+|.+|..+.|-|+
T Consensus       263 dGevl~~~S~r~~~~~eVve~I~~lG~Pv  291 (652)
T COG2433         263 DGEVLDLESRRGIDRSEVVEFISELGKPV  291 (652)
T ss_pred             CCcEEeeeccccCCHHHHHHHHHHcCCce
Confidence            66677767777777777777777777774

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.24  E-value=8.1  Score=40.06  Aligned_cols=8  Identities=0%  Similarity=-0.056  Sum_probs=4.0

Q ss_pred             HHHHHhCC
Q 012695          183 YLNYIEGK  190 (458)
Q Consensus       183 Y~~fl~g~  190 (458)
                      +..++.+.
T Consensus       100 l~~~~~~~  107 (423)
T TIGR01843       100 LRAEADSQ  107 (423)
T ss_pred             HHHHHcCC
Confidence            34565553

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG4717 Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=25  Score=40.02  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          413 LEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSA  449 (458)
Q Consensus       413 ~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~  449 (458)
                      .+|+..+++.++.+.+.+++....++++..++..||.
T Consensus       773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~  809 (984)
T COG4717         773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEG  809 (984)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4677888888888888888888888888888887763

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.13  E-value=4.5  Score=39.19  Aligned_cols=46  Identities=22%  Similarity=0.202  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      +.+++-+..+.++.+.++.|..|-.+.+++|..|.+.+..|...|.
T Consensus        25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIk   70 (230)
T PF10146_consen   25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIK   70 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444556666666666666666666666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=92.12  E-value=11  Score=35.55  Aligned_cols=49  Identities=16%  Similarity=0.162  Sum_probs=31.4

Q ss_pred             CCCCCChHHH--------HHHHHHHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHHH
Q 012695          136 PNSPHNWPAY--------LALIHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNY  186 (458)
Q Consensus       136 vG~pHsWP~~--------Lg~L~WLv~l~~~~~~~~~~~~~~~~~~~~~~y~~~~Y~~f  186 (458)
                      |-.||--|-+        ..|+.|++-++.+.+.+..-..  +.....|....+|...+
T Consensus        25 PQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~i--dd~~~~f~~~~~tl~~L   81 (190)
T PF05266_consen   25 PQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQI--DDSRSSFESLMKTLSEL   81 (190)
T ss_pred             CCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHH
Confidence            3456655533        4577888888887777665443  22356677777777776

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.01  E-value=10  Score=37.36  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      +.+...+...+..++++++.....+..+...+...+..+.
T Consensus        69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=91.78  E-value=22  Score=38.56  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ----TINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q----~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      +.....+++.+..+...+..+..++....+...+|+.++..|    ..+..+.+.+..+..+++..++.++.+..+..+.
T Consensus       413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~a  492 (607)
T KOG0240|consen  413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTA  492 (607)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777777777788888888888778887777666    3455666666666666666555444444333333


Q ss_pred             h
Q 012695          337 T  337 (458)
Q Consensus       337 ~  337 (458)
                      .
T Consensus       493 l  493 (607)
T KOG0240|consen  493 L  493 (607)
T ss_pred             H
Confidence            3

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.73  E-value=6.2  Score=35.34  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN  292 (458)
Q Consensus       237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~  292 (458)
                      +.+..+...+..|+..+..-+..++.+.+..+.++...+....+...++..+....
T Consensus        55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~  110 (151)
T PF11559_consen   55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL  110 (151)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666555555555555555555444444444444444444333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=91.64  E-value=9.6  Score=34.10  Aligned_cols=93  Identities=16%  Similarity=0.214  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695          244 CVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI  323 (458)
Q Consensus       244 ~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i  323 (458)
                      ..-..++..|+++-..++.++-...+++...-..++.....+..|..+.+             .-.+=|..|...+.+.|
T Consensus        27 ~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE-------------~l~dP~RkEv~~vRkkI   93 (159)
T PF04949_consen   27 EMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELE-------------VLADPMRKEVEMVRKKI   93 (159)
T ss_pred             HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------hhccchHHHHHHHHHHH
Confidence            33456888888888887777777766665443333333333333333222             12345778888888889


Q ss_pred             HHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695          324 ADAENARNEWESKTWDLDSKLGRKFK  349 (458)
Q Consensus       324 ~~l~~~~~~l~~~~~~~e~~~~~~~~  349 (458)
                      +.+..++.-+-+.+...|.++...++
T Consensus        94 D~vNreLkpl~~~cqKKEkEykeale  119 (159)
T PF04949_consen   94 DSVNRELKPLGQSCQKKEKEYKEALE  119 (159)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            98888888888777665554444433

This entry represents proteins annotated as RAB6-interacting golgins.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=91.52  E-value=8.6  Score=36.76  Aligned_cols=81  Identities=15%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhc
Q 012695          286 KRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRL  365 (458)
Q Consensus       286 ~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l  365 (458)
                      +....++..++..+.+++==.++.+.++.+...|+.++++....++.++.++..+..+.....++...++++|+.+-.++
T Consensus       130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i  209 (216)
T KOG1962|consen  130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI  209 (216)
T ss_pred             HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            55666777777777776543455566666677777777777777777777777766666667777777788887776655


Q ss_pred             C
Q 012695          366 K  366 (458)
Q Consensus       366 ~  366 (458)
                      .
T Consensus       210 ~  210 (216)
T KOG1962|consen  210 E  210 (216)
T ss_pred             h
Confidence            4

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.48  E-value=5.6  Score=31.36  Aligned_cols=61  Identities=18%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          201 FIEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKM  267 (458)
Q Consensus       201 ~~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~  267 (458)
                      ..++|+..+....+.+..|+.++++|..      ....|..++..|.....+++.=...++.++..+
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKE------KNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457777777788888888888887764      233444444445444444443334444444333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.39  E-value=33  Score=39.73  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=11.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFN  254 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~  254 (458)
                      .+..|+.+...|+.|+++|.
T Consensus       203 ~l~~L~~~~~~l~kdVE~~r  222 (1072)
T KOG0979|consen  203 KLNRLEDEIDKLEKDVERVR  222 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555666665544

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.35  E-value=8.8  Score=37.45  Aligned_cols=39  Identities=13%  Similarity=0.055  Sum_probs=19.4

Q ss_pred             HHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          328 NARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       328 ~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      .+++.+.....+-++..+.++..+-.....-+...+.+.
T Consensus       131 ~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~  169 (251)
T PF11932_consen  131 ERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIE  169 (251)
T ss_pred             HHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCcee
Confidence            344444455555555555555555554444455444444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=91.24  E-value=18  Score=36.42  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAEN  328 (458)
Q Consensus       268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~  328 (458)
                      +..+...+..++..+.++...+.+.++.+.-.+..-+|..++++...+....+..++.+..
T Consensus       107 ~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~~  167 (334)
T TIGR00998       107 QAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSAKAALNAAIQ  167 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666677777778888888888888889999999888888877777766555

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.91  E-value=4.6  Score=38.47  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          269 KLVEEKEREIGKKVEEHKRICEENEEFK  296 (458)
Q Consensus       269 ~~l~~l~~el~~~~~el~~l~~E~~~L~  296 (458)
                      +...+++..++.....+.+++.++.+|+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~  145 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLK  145 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444554444443

>PF14257 DUF4349: Domain of unknown function (DUF4349)

Probab=90.70  E-value=1.2  Score=43.71  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      +.+..+....+..++.++.+.++|...++.-+ +++|+-.+..++.+++.+|+.++.++..+.++
T Consensus       128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~  191 (262)
T PF14257_consen  128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR  191 (262)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556666677788888899999999998555 99999999999999888888887777666554

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=90.68  E-value=20  Score=35.94  Aligned_cols=200  Identities=16%  Similarity=0.253  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E  315 (458)
                      ...+..+...|..-+..+.+-+..+..+....-+.+.+++++.......+..+-.+...+....+.-..+.-++..+..+
T Consensus        36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~  115 (294)
T COG1340          36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLERE  115 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence            33444555555555555555555555555555566666666666666666666666666666666433444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcCCCCcceEecCCCCCCCccccc-cchhhch
Q 012695          316 LQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTPSEVMG-VDYKSTL  394 (458)
Q Consensus       316 ~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~l~~d~~~~ln~~~~~~~ei~~-~d~k~~i  394 (458)
                      +++|.......        ...-+.|..+...+..|...+..--..... .  ..+.       .-.+++-. .+-...+
T Consensus       116 i~~Le~~~~T~--------~L~~e~E~~lvq~I~~L~k~le~~~k~~e~-~--~~~~-------el~aei~~lk~~~~e~  177 (294)
T COG1340         116 IERLEKKQQTS--------VLTPEEERELVQKIKELRKELEDAKKALEE-N--EKLK-------ELKAEIDELKKKAREI  177 (294)
T ss_pred             HHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHH-------HHHHHHHHHHHHHHHH
Confidence            55554433210        011112223333333333333221111000 0  0000       00011111 0112334


Q ss_pred             hHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          395 KPALESFADDVKR----------SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL  453 (458)
Q Consensus       395 k~~L~~l~~~i~~----------~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~  453 (458)
                      ..-+..|+++++.          .+.....+...++..+-.....+++.+.++-.++..++.++..+..
T Consensus       178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~  246 (294)
T COG1340         178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA  246 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555543          2222345566667777777777777788888888888877776543

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=90.63  E-value=2.9  Score=35.21  Aligned_cols=72  Identities=18%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695          268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      -..+-.+..+......+++.+..+...+.+.|....-+.++++.+..+...+.+.+..++.+..+++.++..
T Consensus        28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~   99 (108)
T PF02403_consen   28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666666677777777777777777666655677777777777777777777777666655433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=90.60  E-value=7.2  Score=30.75  Aligned_cols=25  Identities=12%  Similarity=0.068  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          259 ELNMRKEKMEKLVEEKEREIGKKVE  283 (458)
Q Consensus       259 ~~~~k~~~~e~~l~~l~~el~~~~~  283 (458)
                      .++.++...-..|..++.+++..+.
T Consensus         8 ~LE~ki~~aveti~~Lq~e~eeLke   32 (72)
T PF06005_consen    8 QLEEKIQQAVETIALLQMENEELKE   32 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.56  E-value=17  Score=35.46  Aligned_cols=44  Identities=18%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIG  279 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~  279 (458)
                      ...|..++..|...+..++.|++.++......++++..++.+++
T Consensus        51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~   94 (251)
T PF11932_consen   51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE   94 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555544444444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.47  E-value=14  Score=33.96  Aligned_cols=72  Identities=17%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA--RDVERMRRELQAVERDIADAENARNEWES  335 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~--~di~rmn~E~~~L~~~i~~l~~~~~~l~~  335 (458)
                      +......+..+.+++.....+...+...+.+|+..-..=....  .|.++...+.+.+++.|..++...+.++.
T Consensus       100 l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  100 LKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444555555555544433322221  24555555555555555555555444443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.38  E-value=22  Score=35.91  Aligned_cols=89  Identities=15%  Similarity=0.219  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ  317 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~  317 (458)
                      .++++-..|-.|+.+   -+.....++..+...|....++......++..+..++..|+..+..-.          .|.+
T Consensus       192 ~~EekEqqLv~dcv~---QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~----------~EnE  258 (306)
T PF04849_consen  192 TYEEKEQQLVLDCVK---QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA----------AENE  258 (306)
T ss_pred             hccHHHHHHHHHHHH---HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHH
Confidence            555555555555421   113333445555555555555555555555555555555555544332          3444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhH
Q 012695          318 AVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       318 ~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      .|...+......-..+...+.+
T Consensus       259 eL~q~L~~ske~Q~~L~aEL~e  280 (306)
T PF04849_consen  259 ELQQHLQASKESQRQLQAELQE  280 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444443344444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.38  E-value=31  Score=37.72  Aligned_cols=94  Identities=14%  Similarity=0.205  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHhHHhhH-HHHHHHHH
Q 012695          284 EHKRICEENEEFKKRVKLQTINARDVER----MRRELQAVERD---IADAENARNEWESKTWDLDSKLGRK-FKELEALS  355 (458)
Q Consensus       284 el~~l~~E~~~L~~~v~~Q~~S~~di~r----mn~E~~~L~~~---i~~l~~~~~~l~~~~~~~e~~~~~~-~~~lE~~v  355 (458)
                      .++.++.....|......=+.+++|+-.    |..|++.|...   +..++.+...+..+....=.+++.. .+....+-
T Consensus       298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~  377 (557)
T COG0497         298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELE  377 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555555432    23333332221   1223333333333332222222221 12333333


Q ss_pred             HHHHHHHHhcCC-CCcceEecCC
Q 012695          356 MECNQAMKRLKL-ATEIQYSLNS  377 (458)
Q Consensus       356 ~~yN~~~~~l~l-~~d~~~~ln~  377 (458)
                      ..-+..+..|++ +..|.+.+++
T Consensus       378 ~~v~~eL~~L~Me~a~F~ve~~~  400 (557)
T COG0497         378 KEVTAELKALAMEKARFTVELKP  400 (557)
T ss_pred             HHHHHHHHhcCCCCceEEEEecc
Confidence            444555666777 4467777766

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=90.21  E-value=1  Score=50.79  Aligned_cols=18  Identities=22%  Similarity=0.350  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 012695          434 RKRIDALQFHINEVSAKK  451 (458)
Q Consensus       434 ~~e~~~Le~~~~~l~~q~  451 (458)
                      +..+++|+++...|.+++
T Consensus       565 ~~~l~~L~~En~~L~~~l  582 (722)
T PF05557_consen  565 KSTLEALQAENEDLLARL  582 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.14  E-value=23  Score=35.93  Aligned_cols=44  Identities=7%  Similarity=0.108  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       293 ~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      .+|...+..-+-.+-|||-+-.|-..|...|..++.+++-+.+.
T Consensus       175 ~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~  218 (319)
T PF09789_consen  175 HELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT  218 (319)
T ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555655666677777777777777777666665555444

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=89.94  E-value=27  Score=36.42  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=9.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHH
Q 012695          234 TEREKLEKEKCVLEEDLNKFN  254 (458)
Q Consensus       234 ~~l~~L~~~~~~L~~D~~Kf~  254 (458)
                      +.+..|+.++-.|+.-+...+
T Consensus       136 rkl~qLr~ek~~lEq~leqeq  156 (552)
T KOG2129|consen  136 RKLKQLRHEKLPLEQLLEQEQ  156 (552)
T ss_pred             HHHHHHHhhhccHHHHHHHHH
Confidence            345555544444444444333

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=89.91  E-value=2.9  Score=34.05  Aligned_cols=62  Identities=13%  Similarity=0.238  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      .|++..++.+.......+.+..++....+|+++...+..|...+...+...++++..+.+..
T Consensus         5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN   66 (85)
T PF15188_consen    5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN   66 (85)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence            34555555566666666677788888999999999999999999999999999999888753

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=89.88  E-value=10  Score=31.48  Aligned_cols=78  Identities=15%  Similarity=0.308  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHh
Q 012695          268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ--TINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLG  345 (458)
Q Consensus       268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q--~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~  345 (458)
                      ...+.....++......+..+.....++...+...  ++|+.++...+.-+..|...|......+..+...+....-.+.
T Consensus         4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~   83 (123)
T PF02050_consen    4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQ   83 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666666666664444333  5899999888888888888888888888777776665554443

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.86  E-value=8.1  Score=36.78  Aligned_cols=35  Identities=0%  Similarity=0.017  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      .++++....++++++..+.++..++.++..++..+
T Consensus       135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        135 NGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444454444443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=89.80  E-value=31  Score=36.93  Aligned_cols=83  Identities=12%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC------------H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH
Q 012695          283 EEHKRICEENEEFKKRVKLQTIN------------A------RDVERMRRELQAVERDIADAENARNEWESKTW---DLD  341 (458)
Q Consensus       283 ~el~~l~~E~~~L~~~v~~Q~~S------------~------~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~---~~e  341 (458)
                      -.+..++.++..|+..+....-+            +      ..+.....+...++..++.+...+++++++..   +.+
T Consensus       275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~  354 (498)
T TIGR03007       275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE  354 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            34556677777777776554221            1      13333344444454555444444444444332   334


Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHhc
Q 012695          342 SKLGRKFKELEALSMECNQAMKRL  365 (458)
Q Consensus       342 ~~~~~~~~~lE~~v~~yN~~~~~l  365 (458)
                      .++.+...+.+..-..|+.++.++
T Consensus       355 ~el~~L~Re~~~~~~~Y~~l~~r~  378 (498)
T TIGR03007       355 AELTQLNRDYEVNKSNYEQLLTRR  378 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444445566665554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=89.38  E-value=27  Score=35.56  Aligned_cols=67  Identities=10%  Similarity=0.114  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       271 l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      +...+.++...+.+++..+.+.++.+.-.+..-+|..++++...+....+..++.++.+........
T Consensus       116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~  182 (346)
T PRK10476        116 AASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAV  182 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345566666677777788888888888888999999999999988888888877776666555443

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=89.38  E-value=16  Score=38.59  Aligned_cols=69  Identities=10%  Similarity=0.286  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHhHH
Q 012695          276 REIGKKVEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSKL  344 (458)
Q Consensus       276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~--S~~di~rmn~E~~~L~~~i~~l~~~~~~l~---~~~~~~e~~~  344 (458)
                      .+.+.....+.+|+.-++.|++-|...++  ++.+++.+..++..+.+++.+++.-+....   +++|+.|+..
T Consensus       213 ~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~  286 (424)
T PF03915_consen  213 EESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQK  286 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            44444455566777777888888887766  778889999999999999887777666554   5777777644

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=89.26  E-value=0.11  Score=58.52  Aligned_cols=12  Identities=42%  Similarity=0.520  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHH
Q 012695          347 KFKELEALSMEC  358 (458)
Q Consensus       347 ~~~~lE~~v~~y  358 (458)
                      ++..++.+..+|
T Consensus       296 kl~~~E~~~~el  307 (722)
T PF05557_consen  296 KLERLEELEEEL  307 (722)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.21  E-value=23  Score=34.60  Aligned_cols=115  Identities=19%  Similarity=0.316  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ  317 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~  317 (458)
                      .|..+...++.+..+.+.-+...+..+..++.++...+.+-...+.....+..++.+|+.....   +..+-.+|-.++.
T Consensus         9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~---~~eEk~~Le~e~~   85 (246)
T PF00769_consen    9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEM---QEEEKEQLEQELR   85 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            3444455555555555555566666666666666666665555555566666666666655333   3444555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHH
Q 012695          318 AVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS  355 (458)
Q Consensus       318 ~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v  355 (458)
                      .++..+..+......-...+..+...+.......+..-
T Consensus        86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak  123 (246)
T PF00769_consen   86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK  123 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666655555554444444444444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=89.18  E-value=27  Score=35.39  Aligned_cols=47  Identities=17%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          243 KCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC  289 (458)
Q Consensus       243 ~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~  289 (458)
                      +.....|.++++..+..++.....++-.++.+..+...++++-..+.
T Consensus       122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln  168 (401)
T PF06785_consen  122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN  168 (401)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Confidence            33444455555555555555555555555555444444444444443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=88.99  E-value=0.12  Score=59.33  Aligned_cols=25  Identities=40%  Similarity=0.586  Sum_probs=0.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH
Q 012695          203 EKLEKEKENVSEYVEELKKKVSEME  227 (458)
Q Consensus       203 ~kl~~~~~~~~e~~~~L~~e~~eLe  227 (458)
                      .++...+..+.+.+..+...+..|+
T Consensus       324 KkL~~~L~el~e~le~~~~~~~~Le  348 (859)
T PF01576_consen  324 KKLERKLQELQEQLEEANAKVSSLE  348 (859)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555444444444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.69  E-value=16  Score=39.25  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEK-------MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINA  306 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~-------~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~  306 (458)
                      ....|.++...|+.|+.--.+-+-+++.+...       .+.++..++--|+.+.+++-.++.....-.++.+.--+++
T Consensus       339 e~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~p  417 (654)
T KOG4809|consen  339 ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNP  417 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCh
Confidence            45556666666666665544444444444443       4444444444455555555555555555555544444433

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.65  E-value=9.2  Score=30.54  Aligned_cols=62  Identities=18%  Similarity=0.322  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW  338 (458)
Q Consensus       267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~  338 (458)
                      ++.+|...-+.+.-.+.+++.++.++..|..          +++.+...++.|......++.....++.++.
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~----------e~~~~~~~r~~L~~en~qLk~E~~~WqerLr   70 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQ----------EVQNAQHQREELERENNHLKEQQNGWQERLQ   70 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444445555555555533          3444555566666666666666666655543

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=88.63  E-value=0.13  Score=59.01  Aligned_cols=36  Identities=11%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL  453 (458)
Q Consensus       418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~  453 (458)
                      .|+..++.+...++..+..+..|+.+.+.+..++..
T Consensus       353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e  388 (859)
T PF01576_consen  353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAE  388 (859)
T ss_dssp             ------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            344444444444444444444444444444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.55  E-value=29  Score=35.98  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCHHHHHHHHHHHHH
Q 012695           52 ADLYTDRSHQSSAIRAINAHLSSHSFHIAF--PLKQVPSVKDITDVIKFLIS  101 (458)
Q Consensus        52 pRpl~DK~~q~~~~~~I~~fL~~~~f~~s~--k~l~~PT~KdF~~If~fL~~  101 (458)
                      |--+.|++   .+++.|+..|...|+|...  ..|++=.+-.-+.|...|..
T Consensus        63 p~e~DDPn---~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad  111 (359)
T PF10498_consen   63 PQEYDDPN---ATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLAD  111 (359)
T ss_pred             CcccCCHH---HHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHH
Confidence            55667766   7999999999999988654  44677788888888888876

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=88.52  E-value=51  Score=37.62  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR  364 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~  364 (458)
                      ++.-|..-+..+...+..++.....+..++..+|.++......-+.....|..+-..
T Consensus       653 ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~e  709 (769)
T PF05911_consen  653 QLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEE  709 (769)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            444455566666666666777777777777777777666555555555555555333

The function of this family is unknown.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=88.51  E-value=33  Score=35.52  Aligned_cols=35  Identities=11%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          420 QQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       420 ~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~  454 (458)
                      .+++..-...+.+...+.+-|+..+..+++-|+-|
T Consensus       251 ~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y  285 (499)
T COG4372         251 AEQIRERERQLQRLETAQARLEQEVAQLEAYYQAY  285 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555566666666666666655554

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=88.45  E-value=40  Score=37.61  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      ++..+.++++.+...-+..++.++.|-.+++.|.++..
T Consensus       224 e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~  261 (916)
T KOG0249|consen  224 ELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL  261 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34444455555554444555555555555555554433

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=88.14  E-value=21  Score=33.47  Aligned_cols=86  Identities=20%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHH
Q 012695          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL-QTINARDVERMRRE  315 (458)
Q Consensus       237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~-Q~~S~~di~rmn~E  315 (458)
                      ..++.....|+.++.+...-+..++.+++.....-. -..+-.....+++.++.++++|+..++. ....|+-|+.|+.+
T Consensus        65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~-~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~  143 (188)
T PF03962_consen   65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE-ESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEE  143 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344445555555555555444444444444421111 1134455667777888888888887773 24566666666655


Q ss_pred             HHHHHHHH
Q 012695          316 LQAVERDI  323 (458)
Q Consensus       316 ~~~L~~~i  323 (458)
                      ...+...+
T Consensus       144 ~~~~~~~a  151 (188)
T PF03962_consen  144 IKIAKEAA  151 (188)
T ss_pred             HHHHHHHH
Confidence            55444433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=87.96  E-value=38  Score=35.59  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=11.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHhc
Q 012695          344 LGRKFKELEALSMECNQAMKRL  365 (458)
Q Consensus       344 ~~~~~~~lE~~v~~yN~~~~~l  365 (458)
                      +....-+.+..-..|+.++.++
T Consensus       344 ~~~L~r~~~~~~~~y~~ll~r~  365 (444)
T TIGR03017       344 MSVLQRDVENAQRAYDAAMQRY  365 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444445566666554

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=87.94  E-value=0.16  Score=57.32  Aligned_cols=43  Identities=12%  Similarity=0.190  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCCCCCHHHHH--HHHHHHHHccCCCC
Q 012695           60 HQSSAIRAINAHLSSHSFHIAFPLKQVPSVKDIT--DVIKFLISQLDYPS  107 (458)
Q Consensus        60 ~q~~~~~~I~~fL~~~~f~~s~k~l~~PT~KdF~--~If~fL~~~iD~~~  107 (458)
                      +...+..-|+.|+..  |+.+- ++  -+.-|..  .|+.-+++.|||.+
T Consensus         4 ~~~~l~~~Lv~Wv~t--f~~~~-~~--~~~~dL~DGv~L~evL~qIDp~~   48 (713)
T PF05622_consen    4 DKMELCDSLVTWVQT--FNLSA-PC--SSYEDLSDGVALAEVLHQIDPEY   48 (713)
T ss_dssp             ---HHHHHHHHHHTT-----SS------SHHHHTTSHHHHHHHHHH-TTT
T ss_pred             chhhHHHHHHHHHHH--CCCCC-Cc--CCHHHccchHHHHHHHHHhCccc
Confidence            345677888888865  44221 11  1233333  25777888888753

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters

Probab=87.67  E-value=1.1  Score=31.69  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          417 ISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK  450 (458)
Q Consensus       417 ~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q  450 (458)
                      .-|++..+.+..+|++...+++.|+.+...|.+|
T Consensus         8 elLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q   41 (46)
T PF08946_consen    8 ELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ   41 (46)
T ss_dssp             -------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            3678889999999999999999999999999876

It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.51  E-value=39  Score=37.66  Aligned_cols=89  Identities=17%  Similarity=0.241  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhcCCHHHHHHHH
Q 012695          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF-----KKRVKLQTINARDVERMR  313 (458)
Q Consensus       239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L-----~~~v~~Q~~S~~di~rmn  313 (458)
                      +.+.-..|..-+.++..|++.+...+.+-...+.++..+       ++.+..++..-     .-.++...+|-+..+.++
T Consensus        94 ~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q-------ie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr  166 (660)
T KOG4302|consen   94 SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ-------IEKLCEELGGPEDLPSFLIADESDLSLEKLEELR  166 (660)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCccCCcccccCcccccHHHHHHHH
Confidence            334444777888888888888877776665555555544       45555555443     667889999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 012695          314 RELQAVERDIADAENARNEWE  334 (458)
Q Consensus       314 ~E~~~L~~~i~~l~~~~~~l~  334 (458)
                      ..+..|++....--+....+.
T Consensus       167 ~~L~~L~~ek~~Rlekv~~~~  187 (660)
T KOG4302|consen  167 EHLNELQKEKSDRLEKVLELK  187 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888877664444443333

>PRK07720 fliJ flagellar biosynthesis chaperone; Validated

Probab=87.50  E-value=20  Score=31.80  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV---KLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v---~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      -+...+.....+......++..+..+..+.....+....+   ..+|+++.+.-..+.=+..|...|......+..+...
T Consensus        14 ~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~   93 (146)
T PRK07720         14 KENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQ   93 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444456666666777777777777777777777764   3578999998888888888888887777777766666


Q ss_pred             hhHHHhHH---hhHHHHHHHHHHHH
Q 012695          337 TWDLDSKL---GRKFKELEALSMEC  358 (458)
Q Consensus       337 ~~~~e~~~---~~~~~~lE~~v~~y  358 (458)
                      +...-..+   .+..+.+|.+.+.+
T Consensus        94 ve~~r~~~~ea~~~~k~~ekLker~  118 (146)
T PRK07720         94 MNRKQQDLTEKNIEVKKYEKMKEKK  118 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54433322   33445666666543

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=87.23  E-value=67  Score=37.57  Aligned_cols=148  Identities=14%  Similarity=0.281  Sum_probs=68.4

Q ss_pred             HhHHHHHHHHHHH--HHHHHhccCCCChHH------HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Q 012695          210 ENVSEYVEELKKK--VSEMEGAMTGPTERE------KLEKEKCVLEEDLNKFNAII------------GELNMRKEKMEK  269 (458)
Q Consensus       210 ~~~~e~~~~L~~e--~~eLe~l~~~~~~l~------~L~~~~~~L~~D~~Kf~~yi------------~~~~~k~~~~e~  269 (458)
                      +.+.+=..+|++.  ..-|+++.+-|+..+      .|+.++....+|++-++.-+            ..++.-+....+
T Consensus      1031 ~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTK 1110 (1439)
T PF12252_consen 1031 QALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITK 1110 (1439)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence            3444434445443  244555555555433      66777777777766655211            122222233333


Q ss_pred             HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          270 LVEEKE--------------REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES  335 (458)
Q Consensus       270 ~l~~l~--------------~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~  335 (458)
                      +|..++              ..+.+.++|+.-+..|..++...  ..++.=.||+.+...++.+...+..+  -+.++.+
T Consensus      1111 rIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~--~dkVDFSDIEkLE~qLq~~~~kL~dA--yl~eitK 1186 (1439)
T PF12252_consen 1111 RITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSG--TDKVDFSDIEKLEKQLQVIHTKLYDA--YLVEITK 1186 (1439)
T ss_pred             HHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccC--CCcccHHHHHHHHHHHHHhhhhhHHH--HHHHHHH
Confidence            333332              22334444444444444444332  23355558887777777766665321  1222223


Q ss_pred             HhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695          336 KTWDLDSKLGRKFKELEALSMECNQA  361 (458)
Q Consensus       336 ~~~~~e~~~~~~~~~lE~~v~~yN~~  361 (458)
                      .+..+|.+.-+...++-.++..+|..
T Consensus      1187 qIsaLe~e~PKnltdvK~missf~d~ 1212 (1439)
T PF12252_consen 1187 QISALEKEKPKNLTDVKSMISSFNDR 1212 (1439)
T ss_pred             HHHHHHhhCCCchhhHHHHHHHHHhh
Confidence            33334433444444555555555443

There is little literature describing the family.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=87.23  E-value=22  Score=31.97  Aligned_cols=39  Identities=28%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          406 KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHI  444 (458)
Q Consensus       406 ~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~  444 (458)
                      +++...+.....++++.|+.+...+.....++..+..+-
T Consensus       100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~  138 (145)
T COG1730         100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ  138 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444666666666666666666666665543

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=87.03  E-value=76  Score=38.02  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHH
Q 012695          278 IGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFK  349 (458)
Q Consensus       278 l~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~  349 (458)
                      ++....+++....+++.+..++..-.....-++.++.|...+.+....+...++.++..+-+.+..+.+...
T Consensus       790 ~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~  861 (1294)
T KOG0962|consen  790 LERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLIN  861 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666666666666665555666677778888888888888888888887777777766665544

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=86.73  E-value=52  Score=35.81  Aligned_cols=31  Identities=13%  Similarity=0.055  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          421 QQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       421 ~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      -+++..+..-.+.-..++.....+....+-|
T Consensus       488 aqve~ak~se~e~l~kle~~~~e~~~~k~al  518 (522)
T PF05701_consen  488 AQVEAAKASEKEILEKLEEAMKEIEERKEAL  518 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444433

Several sequences in this family are described as being myosin heavy chain-like.

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=86.62  E-value=30  Score=32.89  Aligned_cols=97  Identities=21%  Similarity=0.275  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      ..++.........+...+.............+.|+.+|-.+  .-.-|+.|++|-. +   |=+.=+..+....++...+
T Consensus        42 ~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR--K~sWs~~DleRFT-~---Lyr~dH~~e~~e~~ak~~l  115 (207)
T PF05546_consen   42 EELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR--KHSWSPADLERFT-E---LYRNDHENEQAEEEAKEAL  115 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCChHHHHHHH-H---HHHhhhhhHHHHHHHHHHH
Confidence            33333334444444444455555555555566666666433  1245999999843 2   2222233334444444555


Q ss_pred             hHHHhHHhhHHHHHH-HHHHHHHH
Q 012695          338 WDLDSKLGRKFKELE-ALSMECNQ  360 (458)
Q Consensus       338 ~~~e~~~~~~~~~lE-~~v~~yN~  360 (458)
                      .+.|....+....|. .++..||.
T Consensus       116 ~~aE~~~e~~~~~L~~~Il~RYHE  139 (207)
T PF05546_consen  116 EEAEEKVEEAFDDLMRAILTRYHE  139 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555554 34566764

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=86.57  E-value=18  Score=39.68  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI-NARDVERMRRELQAVERDIADAENARNEWESKTW  338 (458)
Q Consensus       260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~-S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~  338 (458)
                      ++.+.+.|.+++.++    . .+.+++.+++.+++|+.    .+| ++.|+.++..+.++|++++.....++..+.+.+.
T Consensus       173 ~k~~~~~w~~~~~~L----p-~~~~~~~yk~~v~~i~~----~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~  243 (555)
T TIGR03545       173 LKAMQQKWKKRKKDL----P-NKQDLEEYKKRLEAIKK----KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ  243 (555)
T ss_pred             HHHHHHHHHHHHHhc----C-CchhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444    2 13334444444444443    133 6888889999999988888877777776666666


Q ss_pred             HHHhHHhhHHHHHHHHH-HHHHHHHHhcCC
Q 012695          339 DLDSKLGRKFKELEALS-MECNQAMKRLKL  367 (458)
Q Consensus       339 ~~e~~~~~~~~~lE~~v-~~yN~~~~~l~l  367 (458)
                      ..--.+...+.+++... ++|+.+.....+
T Consensus       244 ~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~  273 (555)
T TIGR03545       244 NDKKQLKADLAELKKAPQNDLKRLENKYAI  273 (555)
T ss_pred             HhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence            55555666677777665 457877776554

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=86.53  E-value=15  Score=32.65  Aligned_cols=52  Identities=19%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCHHHH
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL--QTINARDV  309 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~--Q~~S~~di  309 (458)
                      ..+....-.++..+..++.++...-.++..+..+...+....+.  +++|+.-+
T Consensus        44 ~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l   97 (150)
T PF07200_consen   44 EELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDAL   97 (150)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence            33333333444444455555555555555555555444443333  45655544

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=86.47  E-value=44  Score=34.68  Aligned_cols=60  Identities=7%  Similarity=0.168  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKK  297 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~  297 (458)
                      ..+.+...+...+.|-+.-+..+......+...+..+-++....+.+...+..+.+.|+.
T Consensus       120 ~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~  179 (499)
T COG4372         120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA  179 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555555555555555555555555555555553

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=86.32  E-value=46  Score=34.75  Aligned_cols=43  Identities=21%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK  450 (458)
Q Consensus       408 ~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q  450 (458)
                      ++.+-.+-..+|+.++..+...|.+...++..|+.-+...++-
T Consensus       252 Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~  294 (384)
T PF03148_consen  252 RIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGP  294 (384)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555556666777777777777777777777777766655543

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=86.31  E-value=17  Score=29.83  Aligned_cols=49  Identities=14%  Similarity=0.360  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHH
Q 012695          307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALS  355 (458)
Q Consensus       307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v  355 (458)
                      ++|.+|+..+.+|...++....+...|+....+.--.+...++.+..++
T Consensus        39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL   87 (89)
T PF13747_consen   39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL   87 (89)
T ss_pred             HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677888888888888888888888887777665555555666665554

>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6

Probab=86.26  E-value=19  Score=38.13  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 012695          204 KLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-KEKMEK  269 (458)
Q Consensus       204 kl~~~~~~~~e~~~~L~~e~~eLe~------l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-~~~~e~  269 (458)
                      +|....+.+...+..|+.-+++|-.      .+-.|..++.+.+++..+..++.+++.|+...+.. +..|+.
T Consensus       210 ~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~  282 (424)
T PF03915_consen  210 KLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWES  282 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            5666666677777777777777755      23344578888899999999999999999887754 334543

In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=86.17  E-value=22  Score=30.94  Aligned_cols=103  Identities=13%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV---KLQTINARDVERMRRELQAVERDIADAENARN  331 (458)
Q Consensus       255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v---~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~  331 (458)
                      .+++--+.........+.....+++.....+..+..........+   ..+|+|+.++...+.=+..|...|......+.
T Consensus         6 ~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~   85 (141)
T TIGR02473         6 KLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELA   85 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444445556666666667777777777777777776654   35789999887777777777777777666666


Q ss_pred             HHHHHhhHHHhHH---hhHHHHHHHHHHH
Q 012695          332 EWESKTWDLDSKL---GRKFKELEALSME  357 (458)
Q Consensus       332 ~l~~~~~~~e~~~---~~~~~~lE~~v~~  357 (458)
                      .+...+......+   .+..+.+|.+.+.
T Consensus        86 ~~~~~~e~~r~~l~~a~~~~k~lekL~ek  114 (141)
T TIGR02473        86 LLQQEVEAKRERLLEARRELKALEKLKEK  114 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555544333   3344556666553

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.11  E-value=11  Score=36.01  Aligned_cols=53  Identities=32%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (458)
Q Consensus       246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~  298 (458)
                      ++.|......-++.....+..+-+.+.+++.++++....++.++.|+..|...
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~  185 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM  185 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433443344455556666666666666666666666666666666443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=86.06  E-value=17  Score=31.88  Aligned_cols=23  Identities=13%  Similarity=0.318  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 012695          309 VERMRRELQAVERDIADAENARN  331 (458)
Q Consensus       309 i~rmn~E~~~L~~~i~~l~~~~~  331 (458)
                      +.++..+.+.+...+..++.++.
T Consensus        98 v~~i~~dv~~v~~~V~~Le~ki~  120 (126)
T PF07889_consen   98 VSQIGDDVDSVQQMVEGLEGKID  120 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444443443333333

The region featured in this family is approximately 100 amino acids long.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=85.95  E-value=37  Score=33.33  Aligned_cols=89  Identities=16%  Similarity=0.236  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCHHHH
Q 012695          235 EREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-----LQTINARDV  309 (458)
Q Consensus       235 ~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~-----~Q~~S~~di  309 (458)
                      .+..++++...|..|+..+..-...+..+...+..........-......+..+...+..+-..+.     ..+.+..++
T Consensus        46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l  125 (264)
T PF06008_consen   46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDL  125 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence            355555556666666666666666666666666555555555555555555555555555555553     345678888


Q ss_pred             HHHHHHHHHHHHHH
Q 012695          310 ERMRRELQAVERDI  323 (458)
Q Consensus       310 ~rmn~E~~~L~~~i  323 (458)
                      .+|..|-+.+=+.+
T Consensus       126 ~~~l~ea~~mL~em  139 (264)
T PF06008_consen  126 QRALAEAQRMLEEM  139 (264)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777766654444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.54  E-value=58  Score=35.26  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=17.4

Q ss_pred             HhHHHHHHHhcCCCCccccccccCCCCCC
Q 012695          112 EEDLFVVLKSLSCPFKINKSTLRSPNSPH  140 (458)
Q Consensus       112 EeEv~~~lK~L~YP~~IsKS~L~avG~pH  140 (458)
                      ..|+ ..+...+=|+.++=|  +++|.|.
T Consensus       204 ~~EL-R~qr~rnq~Le~~ss--S~~g~~~  229 (654)
T KOG4809|consen  204 SAEL-RNQRARNQPLEINSS--SAKGLGY  229 (654)
T ss_pred             HHHH-HHHHhhcchhhhhhh--cccCCCc
Confidence            4555 889999999966544  2456653

>smart00806 AIP3 Actin interacting protein 3

Probab=85.50  E-value=19  Score=37.85  Aligned_cols=69  Identities=17%  Similarity=0.249  Sum_probs=51.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 012695          204 KLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-KEKMEKLVE  272 (458)
Q Consensus       204 kl~~~~~~~~e~~~~L~~e~~eLe~------l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-~~~~e~~l~  272 (458)
                      +|...-+.+......|+..++.|-.      .+-.|..++...+++...+.++.+++.||..-.-. +..|+..|+
T Consensus       214 kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~  289 (426)
T smart00806      214 KLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELD  289 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence            5666677777777778888877765      45667789999999999999999999999876532 445554443

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.48  E-value=28  Score=32.69  Aligned_cols=9  Identities=11%  Similarity=0.420  Sum_probs=5.2

Q ss_pred             CChHHHHHH
Q 012695          140 HNWPAYLAL  148 (458)
Q Consensus       140 HsWP~~Lg~  148 (458)
                      ..|.++=.|
T Consensus        10 ~~W~~~E~m   18 (190)
T PF05266_consen   10 PVWKTIESM   18 (190)
T ss_pred             chhHHHHHH
Confidence            367766543

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=85.02  E-value=83  Score=36.60  Aligned_cols=35  Identities=11%  Similarity=0.276  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          414 EELISLQQQSSEMAAKIEGKRKRIDALQFHINEVS  448 (458)
Q Consensus       414 ~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~  448 (458)
                      ++....+++|..++..++.....++.+..++..+.
T Consensus       863 q~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~k  897 (1072)
T KOG0979|consen  863 QQYEVREDELRELETKLEKLSEDLERIKDKLSDVK  897 (1072)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHH
Confidence            45555566666666666666666655555554433

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=84.83  E-value=42  Score=33.05  Aligned_cols=31  Identities=19%  Similarity=0.422  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHIN  445 (458)
Q Consensus       415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~  445 (458)
                      ++..-.+.++++++.|..++.+|..|.....
T Consensus       194 ei~~~re~i~el~e~I~~L~~eV~~L~~~~~  224 (258)
T PF15397_consen  194 EIVQFREEIDELEEEIPQLRAEVEQLQAQAQ  224 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3334444444455555555555555554444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.82  E-value=55  Score=34.39  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKR  298 (458)
Q Consensus       263 k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~  298 (458)
                      +.....+....++.++.....++...+.+....+..
T Consensus       165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~  200 (444)
T TIGR03017       165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE  200 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555566666666666666555555443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>smart00806 AIP3 Actin interacting protein 3

Probab=84.58  E-value=57  Score=34.36  Aligned_cols=62  Identities=15%  Similarity=0.344  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHhH
Q 012695          282 VEEHKRICEENEEFKKRVKLQTI--NARDVERMRRELQAVERDIADAENARNEWE---SKTWDLDSK  343 (458)
Q Consensus       282 ~~el~~l~~E~~~L~~~v~~Q~~--S~~di~rmn~E~~~L~~~i~~l~~~~~~l~---~~~~~~e~~  343 (458)
                      .....+++.=++.|++-|...|.  ++.+++.+..++..+.+++.+++.-+....   +++|+.|+.
T Consensus       223 ltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~  289 (426)
T smart00806      223 LTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELD  289 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence            33344455556778888888876  567778888888877777776655444221   455665543

Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=84.56  E-value=50  Score=37.87  Aligned_cols=57  Identities=25%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          239 LEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       239 L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      ++.=...+..|-.++...+..++....+++++..++++.+...+...++++.+.++|
T Consensus       504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l  560 (782)
T PRK00409        504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL  560 (782)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344455566666677776666666666555555554444444444444444444

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=84.51  E-value=63  Score=34.74  Aligned_cols=25  Identities=8%  Similarity=0.234  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHH
Q 012695          316 LQAVERDIADAENARNEWESKTWDL  340 (458)
Q Consensus       316 ~~~L~~~i~~l~~~~~~l~~~~~~~  340 (458)
                      +..|...|..+......+.+...++
T Consensus       167 ~~~L~~qi~~L~~~n~~i~~ea~nL  191 (475)
T PRK10361        167 RHTLAHEIRNLQQLNAQMAQEAINL  191 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444333

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=84.47  E-value=45  Score=33.03  Aligned_cols=73  Identities=19%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEW  333 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l  333 (458)
                      ......++....++...+.|++...+++.+.+++.++++.+|..-   .+-.-++..++.++.+.+..+..+.+.+
T Consensus       189 ~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~---~~rl~~l~~~~~~l~k~~~~~~sKV~kf  261 (269)
T PF05278_consen  189 ETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM---KGRLGELEMESTRLSKTIKSIKSKVEKF  261 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445566777778888888888888888888888888888877422   2334455555666666665555554443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=84.42  E-value=80  Score=35.87  Aligned_cols=34  Identities=12%  Similarity=0.145  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ  302 (458)
Q Consensus       269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q  302 (458)
                      +++..+..++.....+....+.....++..+...
T Consensus       237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~  270 (754)
T TIGR01005       237 QQLAELNTELSRARANRAAAEGTADSVKKALQNG  270 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4556666666666666666666666666666543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF14992 TMCO5: TMCO5 family

Probab=84.01  E-value=20  Score=35.58  Aligned_cols=22  Identities=9%  Similarity=0.368  Sum_probs=13.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHh
Q 012695          207 KEKENVSEYVEELKKKVSEMEG  228 (458)
Q Consensus       207 ~~~~~~~e~~~~L~~e~~eLe~  228 (458)
                      ..|....+.++.|+.++.+...
T Consensus        25 ~ki~~~E~~iq~Le~Eit~~~~   46 (280)
T PF14992_consen   25 QKIQEKEGAIQSLEREITKMDH   46 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            4445556667777777776654

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=83.96  E-value=68  Score=34.73  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695          282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA  361 (458)
Q Consensus       282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~  361 (458)
                      +.+++.+..-...+...++.|.+.=-.+.   ...+.+.+.+..++.....++..+..+.-.=..+.+.++.+.....+.
T Consensus       353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq---~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         353 EKELKELESVLDEILENIEAQEVAYSELQ---DNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555433333   344555555555555555555555554444444555555555555544


Q ss_pred             HHhc
Q 012695          362 MKRL  365 (458)
Q Consensus       362 ~~~l  365 (458)
                      .|.+
T Consensus       430 kR~m  433 (570)
T COG4477         430 KRYM  433 (570)
T ss_pred             HHHH
Confidence            4443

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.82  E-value=20  Score=28.61  Aligned_cols=29  Identities=21%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012695          200 GFIEKLEKEKENVSEYVEELKKKVSEMEG  228 (458)
Q Consensus       200 e~~~kl~~~~~~~~e~~~~L~~e~~eLe~  228 (458)
                      ++.++|+..+....+.+.-|+-++++|..
T Consensus         4 EvleqLE~KIqqAvdtI~LLqmEieELKe   32 (79)
T PRK15422          4 EVFEKLEAKVQQAIDTITLLQMEIEELKE   32 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888778888888888887764

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=83.52  E-value=43  Score=35.19  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 012695          201 FIEKLEKEKENVSEYVEELKKKVSEMEG  228 (458)
Q Consensus       201 ~~~kl~~~~~~~~e~~~~L~~e~~eLe~  228 (458)
                      +..++..+.+....+++.-++=++.||+
T Consensus       144 l~~~ld~e~~~~~~e~~~Y~~~l~~Le~  171 (447)
T KOG2751|consen  144 LLNKLDKEVEDAEDEVDTYKACLQRLEQ  171 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344555555555555554444555554

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=83.46  E-value=39  Score=33.39  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=14.6

Q ss_pred             HHhhHHHhHHhhHHHHHH---HHHHHHHHHHHh
Q 012695          335 SKTWDLDSKLGRKFKELE---ALSMECNQAMKR  364 (458)
Q Consensus       335 ~~~~~~e~~~~~~~~~lE---~~v~~yN~~~~~  364 (458)
                      ..+.-+|..+.+....++   .-+..|-.-+.+
T Consensus        95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr  127 (307)
T PF10481_consen   95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELER  127 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555554444   444555444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=83.42  E-value=24  Score=29.16  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      .++.-+..|+..+...+......+..++.+++.+...+.....+.+.+..-.
T Consensus        45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~   96 (123)
T PF02050_consen   45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLK   96 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5777888899999999999988888888888888887777777766665443

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=83.29  E-value=76  Score=34.78  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=25.4

Q ss_pred             chhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          389 DYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRI  437 (458)
Q Consensus       389 d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~  437 (458)
                      .|...++..|..|.+.. ....+.+.+...+..++....+.+...|...
T Consensus       325 ~~~~~~~~el~~L~~~~-~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~  372 (557)
T COG0497         325 EYLDKIKEELAQLDNSE-ESLEALEKEVKKLKAELLEAAEALSAIRKKA  372 (557)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555443322 2334444556666666666666666666544

>PRK05689 fliJ flagellar biosynthesis chaperone; Validated

Probab=83.17  E-value=32  Score=30.40  Aligned_cols=105  Identities=12%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          254 NAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK---LQTINARDVERMRRELQAVERDIADAENAR  330 (458)
Q Consensus       254 ~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~---~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~  330 (458)
                      +..++-.+.+.+.....+.....+++.....+..+.....+....+.   .+|+|+.+.-..+.=+..|...|......+
T Consensus         8 ~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v   87 (147)
T PRK05689          8 ATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQL   87 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444455566666667777777777777777766666443   478999997766666777777776666666


Q ss_pred             HHHHHHhhHHHhH---HhhHHHHHHHHHHHH
Q 012695          331 NEWESKTWDLDSK---LGRKFKELEALSMEC  358 (458)
Q Consensus       331 ~~l~~~~~~~e~~---~~~~~~~lE~~v~~y  358 (458)
                      ..+...+......   .....+.+|.+.+.+
T Consensus        88 ~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~  118 (147)
T PRK05689         88 TQWTQKVDNARKYWQEKKQRLEALETLQERY  118 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555554433322   233555666666543

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=82.97  E-value=73  Score=34.30  Aligned_cols=56  Identities=14%  Similarity=0.208  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          241 KEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       241 ~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      .+...+-.|+.|=..+.+.   +.....+.|+.+.+++....+++..+..++..+++.+
T Consensus       194 ~keq~~y~~~~KelrdtN~---q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~  249 (596)
T KOG4360|consen  194 EKEQQLYGDCVKELRDTNT---QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI  249 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4455566666665554333   2222333334444444444444444444444444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=82.92  E-value=45  Score=31.83  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMR  263 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k  263 (458)
                      ...+.+++..+.....++..++..++.-
T Consensus        25 ~~~l~~k~~e~~~~~~~m~~i~~e~Ek~   52 (207)
T PF05010_consen   25 EQELKKKYEELHKENQEMRKIMEEYEKT   52 (207)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3344455555555555555555544443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=82.24  E-value=58  Score=32.67  Aligned_cols=70  Identities=16%  Similarity=0.241  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR  330 (458)
Q Consensus       261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~  330 (458)
                      ...+..+...+..++.++...+.++...+.+.++.+.-.+..-+|..+++....+...++..++.+...+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~  158 (327)
T TIGR02971        89 ARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASR  158 (327)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777778888888888999999999999999999999999999999888887777665544

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.14  E-value=45  Score=31.36  Aligned_cols=120  Identities=16%  Similarity=0.207  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRIC--EENEEFKKRVKLQTINARDVERMR  313 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~--~E~~~L~~~v~~Q~~S~~di~rmn  313 (458)
                      -+.+++++..|..++.||..-+..+..--.+-  .       +  +..-++-++  .-.+.-+..+.+|.|+.+++.--+
T Consensus        28 ~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~--~-------~--KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~   96 (218)
T KOG1655|consen   28 SDSVEKKISKLDAELCKYKDQIKKTRPGPAQN--A-------L--KQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA   96 (218)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCCCcchh--H-------H--HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34566666666666666666555543210000  0       0  011111111  122344567788889888876555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHh-HHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          314 RELQAVERDIADAENARNEWESKTWDLDS-KLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       314 ~E~~~L~~~i~~l~~~~~~l~~~~~~~e~-~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      .-+..-+.++..++....++........+ .+...-++++++++.-+.+-.-|+
T Consensus        97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lg  150 (218)
T KOG1655|consen   97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLG  150 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555556666666655555544333332 233344556666555544443333

>PLN02939 transferase, transferring glycosyl groups

Probab=81.99  E-value=1.1e+02  Score=35.80  Aligned_cols=83  Identities=13%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh----HHhhHHHHH
Q 012695          276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDS----KLGRKFKEL  351 (458)
Q Consensus       276 ~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~----~~~~~~~~l  351 (458)
                      .|+....+|.-.++..+.-|+..+....=+-+-+-.+..|+.-|+..+..++.+....+..+|.+-.    .+-.+++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (977)
T PLN02939        226 KELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENL  305 (977)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHH
Confidence            4444445555555555666666666666666666677778888888888888777766666655321    123345555


Q ss_pred             HHHHHHH
Q 012695          352 EALSMEC  358 (458)
Q Consensus       352 E~~v~~y  358 (458)
                      +.+++.-
T Consensus       306 ~~~~~~~  312 (977)
T PLN02939        306 QDLLDRA  312 (977)
T ss_pred             HHHHHHH
Confidence            5555443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=81.97  E-value=54  Score=32.17  Aligned_cols=45  Identities=24%  Similarity=0.338  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          238 KLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKV  282 (458)
Q Consensus       238 ~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~  282 (458)
                      .+..+...++..+......+..+...+....+++.+++..+....
T Consensus        60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~  104 (302)
T PF10186_consen   60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR  104 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444443333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.77  E-value=17  Score=33.21  Aligned_cols=57  Identities=19%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          271 VEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWES  335 (458)
Q Consensus       271 l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~  335 (458)
                      |..+++++.....++..+..+...|...     .|.++   |...+..|+..+..++.++..+..
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~e---l~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSE-----PTNEE---LREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333344444444444444444444332     44333   344566666666666666666665

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF13166 AAA_13: AAA domain

Probab=81.65  E-value=96  Score=34.80  Aligned_cols=13  Identities=15%  Similarity=0.307  Sum_probs=6.2

Q ss_pred             CHHHHHHHHHHHH
Q 012695           57 DRSHQSSAIRAIN   69 (458)
Q Consensus        57 DK~~q~~~~~~I~   69 (458)
                      =|+--+..++.++
T Consensus        28 GKStlsr~l~~~~   40 (712)
T PF13166_consen   28 GKSTLSRILKSLC   40 (712)
T ss_pred             CHHHHHHHHHHHh
Confidence            3454444444443

>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.59  E-value=14  Score=36.00  Aligned_cols=36  Identities=11%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHhcCC-CCcceEecCCCCCCCcc
Q 012695          349 KELEALSMECNQAMKRLKL-ATEIQYSLNSNGSTPSE  384 (458)
Q Consensus       349 ~~lE~~v~~yN~~~~~l~l-~~d~~~~ln~~~~~~~e  384 (458)
                      ..+|+-++.++..+-.... |..+.+.|.+.++.|+.
T Consensus        92 ~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~  128 (247)
T COG3879          92 AALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNG  128 (247)
T ss_pred             HHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCccc
Confidence            3445555555554433333 66788999887777765

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=81.52  E-value=49  Score=34.49  Aligned_cols=20  Identities=10%  Similarity=0.292  Sum_probs=10.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHh
Q 012695          209 KENVSEYVEELKKKVSEMEG  228 (458)
Q Consensus       209 ~~~~~e~~~~L~~e~~eLe~  228 (458)
                      ++.+...++.|..++.++..
T Consensus       263 Ld~i~~rl~~L~~~~~~l~~  282 (388)
T PF04912_consen  263 LDSIERRLKSLLSELEELAE  282 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            34444455555555555544

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=81.41  E-value=13  Score=27.82  Aligned_cols=52  Identities=8%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHH
Q 012695          307 RDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMEC  358 (458)
Q Consensus       307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~y  358 (458)
                      +.|+++..+...|...++.+...+..+...+....-+.+|.=+.|..+...|
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY   54 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY   54 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence            3455555555555555555555555555555444445555555565555555

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here

Probab=81.29  E-value=42  Score=30.37  Aligned_cols=210  Identities=14%  Similarity=0.118  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKK  281 (458)
Q Consensus       202 ~~kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~  281 (458)
                      ..+|...+..+..=+...+..+...+-.. .+..++.+.++.+.+..|+......++.+...-..+-....   ......
T Consensus         2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~---~~~~~i   77 (213)
T cd00176           2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH---PDAEEI   77 (213)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC---CChHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHH
Q 012695          282 VEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQA  361 (458)
Q Consensus       282 ~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~  361 (458)
                      ...+..+...-..|...+....-.-++.-......+.+..    +..-+...+..+......-  ....++..+..+..+
T Consensus        78 ~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~----l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~~~~~~  151 (213)
T cd00176          78 QERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD----LEQWLEEKEAALASEDLGK--DLESVEELLKKHKEL  151 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHH


Q ss_pred             HHhcCCCCcceEecCCCCCCCccccccchhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          362 MKRLKLATEIQYSLNSNGSTPSEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQ  421 (458)
Q Consensus       362 ~~~l~l~~d~~~~ln~~~~~~~ei~~~d~k~~ik~~L~~l~~~i~~~~~~~~~e~~~l~~  421 (458)
                      ...+.-....--.++..|.........+-...|...+..+............+....|++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~  211 (213)
T cd00176         152 EEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE  211 (213)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh

>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]

Probab=81.17  E-value=42  Score=30.29  Aligned_cols=86  Identities=9%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ---TINARDVERMRRELQAVERDIADAENARNEW  333 (458)
Q Consensus       257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q---~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l  333 (458)
                      .+--....++....+..+..+.+.....|..+.....++...+...   |+|+...-.++.=+..|...|+.....+..+
T Consensus        11 ~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~   90 (148)
T COG2882          11 LDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKL   90 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445566667777777888888888888888888887775554   7888887777777888888888777777766


Q ss_pred             HHHhhHHHh
Q 012695          334 ESKTWDLDS  342 (458)
Q Consensus       334 ~~~~~~~e~  342 (458)
                      ...+.+...
T Consensus        91 ~~~ve~~r~   99 (148)
T COG2882          91 RKQVEQKRE   99 (148)
T ss_pred             HHHHHHHHH
Confidence            665555443

>PRK09343 prefoldin subunit beta; Provisional

Probab=81.16  E-value=28  Score=30.17  Aligned_cols=34  Identities=15%  Similarity=0.038  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHH
Q 012695          323 IADAENARNEWESKTWDLDSKLGRKFKELEALSM  356 (458)
Q Consensus       323 i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~  356 (458)
                      ++.++.++..++++...++-.+...-..+..++.
T Consensus        80 ~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~  113 (121)
T PRK09343         80 KELLELRSRTLEKQEKKLREKLKELQAKINEMLS  113 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334433333333333333333333333333

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=81.02  E-value=33  Score=33.62  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=12.2

Q ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCC
Q 012695           20 LYGGNRFGGSR--DSDASFASSRPSS   43 (458)
Q Consensus        20 ~~~~~~~~~~r--~s~~s~~~sr~s~   43 (458)
                      |||.+..||.=  +++.+|++..+.|
T Consensus        22 ~~~n~~s~~dl~d~e~d~~~s~~~A~   47 (330)
T KOG2991|consen   22 ASGNRRSFGDLEDDEDDIFGSTTVAP   47 (330)
T ss_pred             CCcchhhccCccccccccccCCCCCC
Confidence            34555555543  4455665554444

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=80.72  E-value=76  Score=33.01  Aligned_cols=58  Identities=16%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          242 EKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       242 ~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      ....|+..+.|-+......+.-...+...++.++.||+-.-++...-.-||.-|-..+
T Consensus       394 hrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqal  451 (593)
T KOG4807|consen  394 HREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQAL  451 (593)
T ss_pred             HHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555666666655555555555556666666666666666666666666554443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.57  E-value=12  Score=31.91  Aligned_cols=47  Identities=21%  Similarity=0.372  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (458)
Q Consensus       255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~  301 (458)
                      +-+..++..+..+-..+..++..+....+|-..++.|+..|+..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~   54 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE   54 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555666666666666666666666666666666655543

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=80.50  E-value=37  Score=29.23  Aligned_cols=31  Identities=10%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHIN  445 (458)
Q Consensus       415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~  445 (458)
                      ....+.++++.+++.+..++.++..+...++
T Consensus        94 ~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        94 RIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345555556666666666666666555543

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK11519 tyrosine kinase; Provisional

Probab=80.33  E-value=42  Score=37.99  Aligned_cols=14  Identities=21%  Similarity=0.159  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHhh
Q 012695          145 YLALIHWLVQIASY  158 (458)
Q Consensus       145 ~Lg~L~WLv~l~~~  158 (458)
                      ...++.+|..-+..
T Consensus       207 ~~~~~~~l~~~l~V  220 (719)
T PRK11519        207 TLGMINNLQNNLTV  220 (719)
T ss_pred             HHHHHHHHHhcceE
Confidence            44566666654433

>TIGR01069 mutS2 MutS2 family protein

Probab=80.28  E-value=67  Score=36.81  Aligned_cols=6  Identities=0%  Similarity=0.080  Sum_probs=2.6

Q ss_pred             hccCCC
Q 012695           72 LSSHSF   77 (458)
Q Consensus        72 L~~~~f   77 (458)
                      +...|+
T Consensus       348 ~aq~G~  353 (771)
T TIGR01069       348 MFQSGI  353 (771)
T ss_pred             HHHhCC
Confidence            444443

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=80.27  E-value=1.1e+02  Score=34.47  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 012695          260 LNMRKEKMEKLVEEKEREIGKK  281 (458)
Q Consensus       260 ~~~k~~~~e~~l~~l~~el~~~  281 (458)
                      ......+++..++++..||...
T Consensus       161 ~eer~~kl~~~~qe~naeL~ra  182 (916)
T KOG0249|consen  161 IEERTRKLEEQLEELNAELQRA  182 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555433

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=80.24  E-value=72  Score=32.48  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          237 EKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEE  294 (458)
Q Consensus       237 ~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~  294 (458)
                      +.|+-....|.+.+-.....+-.+.++..+++.-+..+++|-...+.++..+.++..+
T Consensus       102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~E  159 (401)
T PF06785_consen  102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGE  159 (401)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence            4455555666666666666667777777777766666666665555555555554433

>PRK04325 hypothetical protein; Provisional

Probab=80.09  E-value=13  Score=29.37  Aligned_cols=51  Identities=10%  Similarity=0.167  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          252 KFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQ  302 (458)
Q Consensus       252 Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q  302 (458)
                      .+++-|..++.+..-.+..|+.|...+.+...++..++.+...|..++...
T Consensus         6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344456666666667777777777666666666666666666665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
2ve7_A	315	Crystal Structure Of A Bonsai Version Of The Human		1e-10
2igp_A	120	Crystal Structure Of Hec1 Ch Domain Length = 120		6e-09

>pdb|2VE7|A Chain A, Crystal Structure Of A Bonsai Version Of The Human Ndc80 Complex Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 34/201 (16%)
Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
           D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     TK
Sbjct: 10  DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 68
Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAF- 169
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct: 69  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFD 128
Query: 170 ------------VENNSMYM-YASDSYLNYIEGKDG-------------DVDNIDKGFIE 203
                       + +N +++ Y    Y +++ G D              D+ N+D   +E
Sbjct: 129 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLE 188
Query: 204 KLEKEKENVSEYVEELKKKVS 224
            LE +   ++E +  L+++ S
Sbjct: 189 SLEAKNRALNEQIARLEQERS 209

>pdb|2IGP|A Chain A, Crystal Structure Of Hec1 Ch Domain Length = 120

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 57  DRSHQSSAIRAINAHLSSHSFHIAFPLK--QVPSVKDITDVIKFLISQLDYPS----TTK 110
           D++     IR +   L+ + +     +K  Q PSVKD   +  FL   L  PS     TK
Sbjct: 12  DKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFL-CPSYELPDTK 70
Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLV 153
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+
Sbjct: 71  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLI 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	3e-34
2igp_A	120	Retinoblastoma-associated protein HEC; calponin ho	5e-29
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-04

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C* Length = 315

 Score =  129 bits (325), Expect = 3e-34
 Identities = 53/296 (17%), Positives = 112/296 (37%), Gaps = 27/296 (9%)

Query: 56  TDRSHQSSAIRAINAHLSSHSF--HIAFPLKQVPSVKDITDVIKFLISQLDYP---STTK 110
            D++     IR +   L+ + +  +++    Q PSVKD   +  FL   L        TK
Sbjct: 9   NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTK 68

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKAFV 170
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +  +  +S  F 
Sbjct: 69  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFD 128

Query: 171 ENNSM--------------YMYASDSYLNYIEGKDGDVDNIDKGFIEKLEKEKENVSEYV 216
           +                    Y    Y +++ G D   D ++     KL+      +  +
Sbjct: 129 DGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD-SFDEMNAELQSKLKDLFNVDAFKL 187

Query: 217 EELKKKVSEMEGAMTGPTEREKLEKEKCVLEE-DLNKFNAIIGELNMRKEKMEKLVEEKE 275
           E L+ K   +        +  +LE+E+    + +  +   +    ++ K+++   + +  
Sbjct: 188 ESLEAKNRALN------EQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLEIRKIY 241

Query: 276 REIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARN 331
            E  + +  +         F   + L      +V      L+ +     +     N
Sbjct: 242 GEKLQFIFTNIDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAEFQENVRKTNN 297

>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens} Length = 120

 Score =  109 bits (274), Expect = 5e-29
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 56  TDRSHQSSAIRAINAHLSSHSF--HIAFPLKQVPSVKDITDVIKFLISQLD--YPST-TK 110
            D++     IR +   L+ + +  +++    Q PSVKD   +  FL   L   Y    TK
Sbjct: 11  NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTK 70

Query: 111 FEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLALIHWLVQIASYN 159
           FEE++  + K L  PF ++KS++ +  +PH WP  +A + WL+     +
Sbjct: 71  FEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH 119

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 37/239 (15%), Positives = 99/239 (41%), Gaps = 18/239 (7%)

Query: 203  EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
            ++L+ EK+ + + + +L++++ E E        R+KL+ EK   +  + K      ++ +
Sbjct: 944  QQLQAEKKKMQQQMLDLEEQLEEEE------AARQKLQLEKVTADGKIKKMED---DILI 994

Query: 263  RKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERD 322
             +++  KL +E++    +  +    + EE E+ K   KL+  +   +  +   L+  E+ 
Sbjct: 995  MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054

Query: 323  IADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYSLNSNGSTP 382
              + E  + + E ++ DL  ++     ++  L  +  +  + L+        L    S  
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ---AALARLEDETSQK 1111

Query: 383  SEVMGVDYKSTLKPALESFADDVKRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQ 441
            +              LES   D++     +       ++Q  +++ ++E  +  ++   
Sbjct: 1112 NNA------LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 19/188 (10%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTE-REKLEKEKCVLEEDLNKFNAIIGEL 260
              KL KE++ + E V +L   ++E E      T+ + K E     LE  L K      EL
Sbjct: 999  NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058

Query: 261  NMRKEKMEK-------LVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMR 313
               K K+E         + E + +I +   +  +  EE +    R++ +T    +  +  
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118

Query: 314  RELQA----VERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLAT 369
            REL++    ++ D+   + ARN+ E +  DL        +ELEAL  E    +       
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLS-------EELEALKTELEDTLDTTATQQ 1171

Query: 370  EIQYSLNS 377
            E++ S   
Sbjct: 1172 ELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 51/262 (19%), Positives = 99/262 (37%), Gaps = 22/262 (8%)

Query: 203  EKLEKEKENVSEYVEE---LKKKVSEMEGAMTGPTER-EKLEKEKCVLEEDLNKFNAIIG 258
            EKL+ E E  +E  E    L  K  E+E  +     R E+ E+    L+ +  K    + 
Sbjct: 899  EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958

Query: 259  ELNMRKEKME----KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR 314
            +L  + E+ E    KL  EK    GK  +    I    ++  K  K + +    V  +  
Sbjct: 959  DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018

Query: 315  ELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATEIQYS 374
             L   E    +    +N+ ES   +L+ +L    K+ E    E  +  ++L    E + S
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRL----KKEEKSRQELEKIKRKL----EGESS 1070

Query: 375  LNSNGSTPSEVMGVDYKSTLK------PALESFADDVKRSSVEKLEELISLQQQSSEMAA 428
                     +    + K+ L        A  +  +D        L+++  L+   S++  
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 429  KIEGKRKRIDALQFHINEVSAK 450
             +E ++   +  +    ++S +
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEE 1152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 64/461 (13%), Positives = 135/461 (29%), Gaps = 136/461 (29%)

Query: 89  VKDITDVIKFLISQLDYPSTTKFEEDLFVVLKSLSCPFKINKSTLRSPNSPHNWPAYLAL 148
            KD+ D+ K ++S+ +        + + +   ++S   ++  + L              +
Sbjct: 35  CKDVQDMPKSILSKEEI-------DHIIMSKDAVSGTLRLFWTLLSKQEE--------MV 79

Query: 149 IHWLVQIASYNYHLTTNSKAFVENNSMYMYASDSYLNYIEGKD---GDVDNIDKGFIEKL 205
             ++ ++   NY    +     E        S     YIE +D    D     K  + +L
Sbjct: 80  QKFVEEVLRINYKFLMSPIK-TEQRQ----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 206 EKEKENVSEYVEELKKKVSE-----------MEGAMTGPTEREK--LEKEKCVLEEDLNK 252
           +           +L++ + E           + G+  G     K  +  + C+  +   K
Sbjct: 135 QP--------YLKLRQALLELRPAKNVLIDGVLGS--G-----KTWVALDVCLSYKVQCK 179

Query: 253 FNAIIGELNMRK--------EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL--- 301
            +  I  LN++         E ++KL+ + +     + +    I       +  ++    
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 302 --QTINA----RDVERMRRELQAVE---------RD--IADAENARNEW----------- 333
                N      +V+   +   A           R   + D  +A               
Sbjct: 240 SKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 334 -ESKTWDLDSK-LGRKFKEL--EALS---MECNQ--AMKRLKLATEIQYSLNSNGSTPSE 384
              +   L  K L  + ++L  E L+      +      R  LAT      + N    + 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTT 357

Query: 385 VMGVDYKSTLKPA--------LESFADDVK------------------RSSVEKLEELIS 418
           ++       L+PA        L  F                          V KL +   
Sbjct: 358 IIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 419 LQQQSSEMAAKIEG-----KRKRIDALQFH---INEVSAKK 451
           +++Q  E    I       K K  +    H   ++  +  K
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 36/259 (13%), Positives = 88/259 (33%), Gaps = 62/259 (23%)

Query: 181 DSYLNYIEGKDGDV--DNIDKGFIEKLEKEKENVSEYVEELKKKV---SEMEGAMTGPTE 235
           D      + +  D+     D  F++  +       + V+++ K +    E++  +     
Sbjct: 8   DFETGEHQYQYKDILSVFEDA-FVDNFD------CKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 236 REKLEKE-KCVLEEDLNKFNAIIGELNMRKEK---MEKLVEE---KEREIGKKVEEHKRI 288
                +    +L +        + E+ +R      M  +  E           +E+  R+
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 289 CEENEEFKK----RVKLQTINARDVERMRRELQAVERDIADAENARNEWES--------K 336
             +N+ F K    R++          ++R+ L  +            +           K
Sbjct: 120 YNDNQVFAKYNVSRLQP-------YLKLRQALLELR---------PAKNVLIDGVLGSGK 163

Query: 337 TWDLDSKLGRKFKELEA-------LSM-ECNQAMKRLKLATEIQYSLNSNGSTPSEVMGV 388
           TW +   +   +K           L++  CN     L++  ++ Y ++ N ++ S     
Sbjct: 164 TW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS----- 217

Query: 389 DYKSTLKPALESFADDVKR 407
           D+ S +K  + S   +++R
Sbjct: 218 DHSSNIKLRIHSIQAELRR 236

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
            +   E+E +N +  V  L+++++++        E  + + EK  +EE  +K+     +L 
Sbjct: 972  LRMSEEEAKNATNRVLSLQEEIAKLR------KELHQTQTEKKTIEEWADKYKHETEQLV 1025

Query: 262  MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQ 317
               ++   L++ ++ E+ +++ +  +   E  E K   + + +   D+   R   Q
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLEL-DLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 21/170 (12%), Positives = 60/170 (35%), Gaps = 10/170 (5%)

Query: 202  IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELN 261
            +E+ +K    +   + +L++K+ E         E + L ++   LE   +     +    
Sbjct: 916  VERYKKLHIGLENKIMQLQRKIDEQN------KEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 262  MRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK-LQTINARDVERMRRELQAVE 320
             R    E+  +     +    EE  ++ +E  + +   K ++    +      + +  ++
Sbjct: 970  ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029

Query: 321  RDIADAENARNEWESKTWDLDSKLGRKFK---ELEALSMECNQAMKRLKL 367
                  +  + E   +  D   ++    +     E   +E +   +RL+ 
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 3/150 (2%)

Query: 217  EELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKER 276
             ELKK   E             LE +   L+  +++ N     L  +   +E     +  
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 277  EIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK 336
            ++   VE  +   EE +    RV        ++ ++R+EL   + +    E   ++++ +
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQ---EEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 337  TWDLDSKLGRKFKELEALSMECNQAMKRLK 366
            T  L S+L  +   L+    E N+ +    
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 15/73 (20%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 203 EKLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNM 262
           ++L +E E++ ++ EE +K++ E++ A      +   ++ +   ++DL ++N    E  +
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAA-----SKVMEQEWREKAKKDLEEWNQRQSE-QV 131

Query: 263 RKEKMEKLVEEKE 275
            K K+   + +K 
Sbjct: 132 EKNKINNRIADKA 144

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 13/134 (9%), Positives = 47/134 (35%), Gaps = 1/134 (0%)

Query: 233 PTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEEN 292
             + +K   +K    + +         L ++  K E+ +++   +I   +++     +  
Sbjct: 31  RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI-ASIQKKMSEIKSE 89

Query: 293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE 352
            E +     + I      +  RE++ ++ +I      + + + +  +L+         +E
Sbjct: 90  RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149

Query: 353 ALSMECNQAMKRLK 366
                  +  + + 
Sbjct: 150 NEVKNIKETQQIIF 163

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 27/170 (15%), Positives = 66/170 (38%), Gaps = 4/170 (2%)

Query: 202 IEKLEKEKENVSEYVEELKKKVSEMEGAMTGPTER-EKLEKEKCVLEEDLNKFNAIIGEL 260
           ++ L+ +KEN  +  +E +      E       +    L+K+    E++L+K++  + + 
Sbjct: 8   MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67

Query: 261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVE 320
             + E  EK   + E ++       +   EE +  ++R+       + +E   +     E
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATAL---QKLEEAEKAADESE 124

Query: 321 RDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLKLATE 370
           R +   E+   + E K    + +L       E    +  +  ++L +   
Sbjct: 125 RGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	100.0
2igp_A	120	Retinoblastoma-associated protein HEC; calponin ho	100.0
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.18
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.02
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.82
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.78
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.47
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.3
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.56
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.48
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.94
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.76
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.56
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.79
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.67
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	94.56
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.44
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.18
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	93.83
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.7
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.62
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	92.88
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.46
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	92.28
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.04
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	91.97
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	91.32
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.14
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.07
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	89.81
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.71
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	89.55
3ajw_A	150	Flagellar FLIJ protein; flagellum, type III secret	88.97
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.9
3nr7_A	86	DNA-binding protein H-NS; dimer, oligomerisation,	88.76
2ve7_C	250	Kinetochore protein NUF2, kinetochore protein SPC;	88.71
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.3
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	88.26
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.21
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.88
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	87.31
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.3
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	86.94
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.04
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	84.94
3htk_A	60	Structural maintenance of chromosomes protein 5; S	84.6
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.59
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	84.53
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	84.19
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	84.18
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	84.15
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.1
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	83.96
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	83.86
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	83.66
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.53
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	83.1
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	83.06
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	82.96
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	82.93
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	82.74
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	82.56
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.26
1m1j_A	491	Fibrinogen alpha subunit; coiled coils, disulfide	82.25
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	82.15
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	81.98
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	81.18
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	80.93
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	80.89
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.88
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	80.07

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=100.00  E-value=6.8e-52  Score=414.07  Aligned_cols=176  Identities=24%  Similarity=0.479  Sum_probs=151.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCC--CC-CcchHhHHHHHHHhcCCC
Q 012695           51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDY--PS-TTKFEEDLFVVLKSLSCP  125 (458)
Q Consensus        51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~--~~-~~k~EeEv~~~lK~L~YP  125 (458)
                      |||||+||+||++|+++|++||++|||+  ++.|+|++||+|||+.||+|||++|||  +| ++|+|||||.+||.||||
T Consensus         4 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~~~lK~L~YP   83 (315)
T 2ve7_A            4 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP   83 (315)
T ss_dssp             CCSCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence            7999999999999999999999999997  788999999999999999999999995  56 579999999999999999


Q ss_pred             CccccccccCCCCCCChHHHHHHHHHHHHHHhhhhhhhcCCcc--------------cccchHHHHHHHHHHHHHHhCCC
Q 012695          126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYNYHLTTNSKA--------------FVENNSMYMYASDSYLNYIEGKD  191 (458)
Q Consensus       126 ~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~~~~~~~~~~--------------~~~~~~~~~y~~~~Y~~fl~g~d  191 (458)
                      |+||||+|+|||||||||++||||||||+|+++.+++..++..              ...+.+||+|+.+||..|+.|+|
T Consensus        84 ~~isKS~L~a~g~pHsWp~~Lg~L~WLvel~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~y~~~~Y~~fl~~~d  163 (315)
T 2ve7_A           84 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGAD  163 (315)
T ss_dssp             SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHHHHHCC---------CCBCTTSCBSHHHHHHHHHHHHHHHHHTCS
T ss_pred             ceeCHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhccccccchhcccccccccchHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999998776543311              12345799999999999999996


Q ss_pred             CChhhhhHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHH
Q 012695          192 GDVDNIDKGFIEKLEK-------EKENVSEYVEELKKKVSEME  227 (458)
Q Consensus       192 ~~~e~l~~e~~~kl~~-------~~~~~~e~~~~L~~e~~eLe  227 (458)
                      + ++++++++.+++..       +++++.+++++|++++++||
T Consensus       164 ~-~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le  205 (315)
T 2ve7_A          164 S-FDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLE  205 (315)
T ss_dssp             C-CHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 46888999888887       44555555555555555554

>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-45  Score=315.53  Aligned_cols=109  Identities=28%  Similarity=0.539  Sum_probs=104.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCHHHHHHHHHHHHHccCC--CC-CcchHhHHHHHHHhcCCC
Q 012695           51 AADLYTDRSHQSSAIRAINAHLSSHSFH--IAFPLKQVPSVKDITDVIKFLISQLDY--PS-TTKFEEDLFVVLKSLSCP  125 (458)
Q Consensus        51 DpRpl~DK~~q~~~~~~I~~fL~~~~f~--~s~k~l~~PT~KdF~~If~fL~~~iD~--~~-~~k~EeEv~~~lK~L~YP  125 (458)
                      |||||+||+||++|+++|++||.++||+  ++.|.|++||+|||+.||+|||++|||  +| ++|+||||+.+||.||||
T Consensus         6 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~YP   85 (120)
T 2igp_A            6 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYP   85 (120)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCC
Confidence            8999999999999999999999999997  788999999999999999999999995  56 589999999999999999


Q ss_pred             CccccccccCCCCCCChHHHHHHHHHHHHHHhhh
Q 012695          126 FKINKSTLRSPNSPHNWPAYLALIHWLVQIASYN  159 (458)
Q Consensus       126 ~~IsKS~L~avG~pHsWP~~Lg~L~WLv~l~~~~  159 (458)
                      |+||||+|+||||||+||++||||+|||+|+++.
T Consensus        86 ~~isKS~L~a~g~pHsWp~~L~~L~WLvel~~~~  119 (120)
T 2igp_A           86 FALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH  119 (120)
T ss_dssp             SCCCHHHHHTTTSTTTHHHHHHHHHHHHHHHHHC
T ss_pred             ceeCHHHhcCCCCCccHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999874

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.18  E-value=0.0046  Score=57.86  Aligned_cols=39  Identities=8%  Similarity=0.080  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          415 ELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFL  453 (458)
Q Consensus       415 e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~  453 (458)
                      ++..+...+..+...+...+.++..++.++..+..+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (284)
T 1c1g_A          238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH  276 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444555555555544443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.02  E-value=0.0096  Score=55.64  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 012695          425 EMAAKIEGKRKRIDALQFHINEV  447 (458)
Q Consensus       425 ~~~~~i~~k~~e~~~Le~~~~~l  447 (458)
                      .+...+......+..++.++..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~  256 (284)
T 1c1g_A          234 EAETRAEFAERSVTKLEKSIDDL  256 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.82  E-value=2.9e-05  Score=90.00  Aligned_cols=8  Identities=25%  Similarity=0.654  Sum_probs=3.4

Q ss_pred             HHHHHhcC
Q 012695          116 FVVLKSLS  123 (458)
Q Consensus       116 ~~~lK~L~  123 (458)
                      -.+|+.++
T Consensus       753 ~~lL~~l~  760 (1184)
T 1i84_S          753 ILMIKALE  760 (1184)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHcC
Confidence            34444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.78  E-value=8.7e-05  Score=86.04  Aligned_cols=6  Identities=17%  Similarity=0.291  Sum_probs=4.1

Q ss_pred             cCCCCc
Q 012695          122 LSCPFK  127 (458)
Q Consensus       122 L~YP~~  127 (458)
                      -|||+-
T Consensus       718 ~Gfp~R  723 (1184)
T 1i84_S          718 QGFPNR  723 (1184)
T ss_dssp             HSCCEE
T ss_pred             hcCccc
Confidence            478873

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.47  E-value=0.054  Score=51.79  Aligned_cols=152  Identities=14%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Q 012695          204 KLEKEKENVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVE---------EK  274 (458)
Q Consensus       204 kl~~~~~~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~---------~l  274 (458)
                      .+.+.+..+-.++..|+.++..+..      .+..+..+...++.++.+++.-+.....++.+++.++.         .+
T Consensus        22 ~l~~~~~~lp~el~~le~~~~~l~~------~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL   95 (256)
T 3na7_A           22 SLEPLIREKRKDLDKALNDKEAKNK------AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL   95 (256)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            3444444444555555555555542      45555666666666666666666666666666655553         34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHH--
Q 012695          275 EREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELE--  352 (458)
Q Consensus       275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE--  352 (458)
                      ..|++..+.++..++.++.++...++...   +.++....++..++..+......++.....+......+....+.+.  
T Consensus        96 ~kEie~~~~~i~~lE~eile~~e~ie~~~---~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~  172 (256)
T 3na7_A           96 NIEEDIAKERSNQANREIENLQNEIKRKS---EKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEK  172 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555555555555555555555544432   2334444444444444444433333332222222222222222222  


Q ss_pred             ---HHHHHHHHHHHh
Q 012695          353 ---ALSMECNQAMKR  364 (458)
Q Consensus       353 ---~~v~~yN~~~~~  364 (458)
                         .++..|..+-.+
T Consensus       173 i~~~lL~~Yerir~~  187 (256)
T 3na7_A          173 TEPKIYSFYERIRRW  187 (256)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence               567889888753

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.30  E-value=0.012  Score=56.47  Aligned_cols=83  Identities=8%  Similarity=0.050  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      ..+..........+..++.++...+.++..+...+++.+.++.+- -+..+++.+.+|++.+++.+..++..+.++..++
T Consensus        42 ~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i  120 (256)
T 3na7_A           42 EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-KSERELRSLNIEEDIAKERSNQANREIENLQNEI  120 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444555555555555555555555555432 2666666666666666666655555555554444


Q ss_pred             hHHH
Q 012695          338 WDLD  341 (458)
Q Consensus       338 ~~~e  341 (458)
                      ..++
T Consensus       121 e~~~  124 (256)
T 3na7_A          121 KRKS  124 (256)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.56  E-value=0.059  Score=61.69  Aligned_cols=87  Identities=13%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 012695          239 LEKEKCVLEEDLNKFNAI---IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRE  315 (458)
Q Consensus       239 L~~~~~~L~~D~~Kf~~y---i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E  315 (458)
                      +.++...|+.|+..++..   ....+.+...++++++.++++++....+.+.+++...+++..+.      +.|..|..|
T Consensus       958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e 1031 (1080)
T 2dfs_A          958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQ 1031 (1080)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence            444555555544444432   22222333334444444444444444444444444444433222      344444455


Q ss_pred             HHHHHHHHHHHHHHHH
Q 012695          316 LQAVERDIADAENARN  331 (458)
Q Consensus       316 ~~~L~~~i~~l~~~~~  331 (458)
                      ...|++.+++++..+.
T Consensus      1032 ~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A         1032 NTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555554443333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.48  E-value=0.35  Score=43.97  Aligned_cols=59  Identities=20%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      .+..+..+...|......+...+.++++...++|.+.......++++=..||.++-++-
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~a  147 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNA  147 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34455555556666666666666666666777777676677788888888888876643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.94  E-value=0.11  Score=55.19  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          263 RKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       263 k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      +.+..+.++...+++.++++++++.+++++.++
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  549 (597)
T 3oja_B          517 RQAFKLRETQARRTEADAKQKETEDLEQENIAL  549 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHH
Confidence            333333333333333333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.76  E-value=0.28  Score=56.17  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=13.3

Q ss_pred             HhHHHHHHHhcCCC---C--ccccccccC
Q 012695          112 EEDLFVVLKSLSCP---F--KINKSTLRS  135 (458)
Q Consensus       112 EeEv~~~lK~L~YP---~--~IsKS~L~a  135 (458)
                      -+-+-.+|..++.+   |  .-||=.|.+
T Consensus       725 k~~~~~il~~~~~~~~~~~~G~TKVF~r~  753 (1080)
T 2dfs_A          725 KQTCKNVLEKLILDKDKYQFGKTKIFFRA  753 (1080)
T ss_dssp             HHHHHHHHTTTSCCGGGEEECSSEEEECT
T ss_pred             HHHHHHHHHHhcCChhhheeccccchhcc
Confidence            34466777777654   3  444444544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.56  E-value=1.9  Score=54.51  Aligned_cols=58  Identities=10%  Similarity=0.149  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          395 KPALESFADDV---KRSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKF  452 (458)
Q Consensus       395 k~~L~~l~~~i---~~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~  452 (458)
                      +..|.++..++   .....++++++..+++.++.+++..++...|.+.|+.+++..+.+++
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455554444   33445556677777777777777777777777777777766666553

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.27  E-value=1.7  Score=39.48  Aligned_cols=43  Identities=7%  Similarity=0.161  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Q 012695          267 MEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDV  309 (458)
Q Consensus       267 ~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di  309 (458)
                      ++..+..+..........+..+++.+..|.........|.+|+
T Consensus        93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~  135 (189)
T 2v71_A           93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF  135 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence            3333333333333334444444444444444433333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.09  E-value=0.22  Score=52.78  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          310 ERMRRELQAVERDIADAENARNEWE  334 (458)
Q Consensus       310 ~rmn~E~~~L~~~i~~l~~~~~~l~  334 (458)
                      +.+..|++++++.++..+.+..++.
T Consensus       540 ~~~~~~~~~le~~~~~~~~~~~~l~  564 (597)
T 3oja_B          540 EDLEQENIALEKQLDNKRAKQAELR  564 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhHHHHHHHhhhhhHHHHHH
Confidence            3333344444444444333333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.79  E-value=0.9  Score=46.93  Aligned_cols=59  Identities=10%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHhcC
Q 012695          308 DVERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKRLK  366 (458)
Q Consensus       308 di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~l~  366 (458)
                      +.++|+++.+..++.++.++++.+.++....+.+.++..+...+.+++.+--.++.++|
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (487)
T 3oja_A          429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQLG  487 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence            45556666666677777777777777777777777777777777777766666665553

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.67  E-value=2.2  Score=37.84  Aligned_cols=96  Identities=18%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNE  332 (458)
Q Consensus       253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~  332 (458)
                      ++..+..++.....+++.+..++..|+.-........+.+.+|+.+|..-   ..|++++..-...+..+-..+...+..
T Consensus        53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L---~~El~~~k~~~~k~~~e~r~L~Ekl~~  129 (168)
T 3o0z_A           53 LQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL---QEEVKHLKHNLEKVEGERKEAQDMLNH  129 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555554444444445555555544333   234455544444444444445555555


Q ss_pred             HHHHhhHHHhHHhhHHHHH
Q 012695          333 WESKTWDLDSKLGRKFKEL  351 (458)
Q Consensus       333 l~~~~~~~e~~~~~~~~~l  351 (458)
                      +++...++++.+.-.++.+
T Consensus       130 lEKe~a~~eid~~~eLKal  148 (168)
T 3o0z_A          130 SEKEKNNLEIDLNYKLKSL  148 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHH
Confidence            5555555554444444433

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=94.56  E-value=1.4  Score=37.90  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=53.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 012695          203 EKLEKEKENVSEYVEELKKKVSEMEG------AMTGPTEREKLEKEKCVLEEDLNKFNAIIGELNMR-KEKMEKLVEEK  274 (458)
Q Consensus       203 ~kl~~~~~~~~e~~~~L~~e~~eLe~------l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~~~k-~~~~e~~l~~l  274 (458)
                      .+|....+.+...+..|+..++.|-.      .+-.|..++.+.+.+..+..|+.+++.||....-- +..|+..|...
T Consensus        17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~V   95 (141)
T 3okq_A           17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKV   95 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Confidence            36667777777777777777777755      34455678899999999999999999999987743 56676555544

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.44  E-value=2.4  Score=37.24  Aligned_cols=11  Identities=27%  Similarity=0.477  Sum_probs=4.4

Q ss_pred             HHHHhhHHHhH
Q 012695          333 WESKTWDLDSK  343 (458)
Q Consensus       333 l~~~~~~~e~~  343 (458)
                      +....|.++..
T Consensus       138 ~~~~~~~~~~~  148 (155)
T 2efr_A          138 LLSKNYHLENE  148 (155)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cccchHHHHHH
Confidence            33444444433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.19  E-value=2.8  Score=37.13  Aligned_cols=86  Identities=14%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 012695          211 NVSEYVEELKKKVSEMEGAMTGPTEREKLEKEKCVLEEDLNKFNAIIGEL-------NMRKEKMEKLVEEKEREIGKKVE  283 (458)
Q Consensus       211 ~~~e~~~~L~~e~~eLe~l~~~~~~l~~L~~~~~~L~~D~~Kf~~yi~~~-------~~k~~~~e~~l~~l~~el~~~~~  283 (458)
                      .+......++..+.+|.      +....|+..+..|+.|+..++.-++.=       ...+..++.++..+..|++....
T Consensus        38 El~k~~~~~E~~~rELq------~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~  111 (168)
T 3o0z_A           38 EMSKSISQLESLNRELQ------ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH  111 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455555554      345566666667777776666555433       23455666677777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 012695          284 EHKRICEENEEFKKRVKLQ  302 (458)
Q Consensus       284 el~~l~~E~~~L~~~v~~Q  302 (458)
                      .+..+..++..|+..|...
T Consensus       112 ~~~k~~~e~r~L~Ekl~~l  130 (168)
T 3o0z_A          112 NLEKVEGERKEAQDMLNHS  130 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7777777777776665544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.18  E-value=17  Score=46.13  Aligned_cols=13  Identities=23%  Similarity=0.529  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHH
Q 012695           89 VKDITDVIKFLIS  101 (458)
Q Consensus        89 ~KdF~~If~fL~~  101 (458)
                      .+||..=.+-+|+
T Consensus      1685 ~~~f~eDLk~l~~ 1697 (3245)
T 3vkg_A         1685 SSDFDDDLRMLLK 1697 (3245)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.83  E-value=0.4  Score=40.82  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695          309 VERMRRELQAVERDIADAE----NARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK  363 (458)
Q Consensus       309 i~rmn~E~~~L~~~i~~l~----~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~  363 (458)
                      ++-+...+..|+..|..++    ..+..++..+..+|.++.+...+++..+.+|..++.
T Consensus        52 l~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Lln  110 (129)
T 3tnu_B           52 IDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMN  110 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555554443    345566667777777777788888888888876654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.70  E-value=2.3  Score=34.49  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIG  258 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~  258 (458)
                      .+.+.++...|+.|......-.+
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae   26 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAE   26 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666655533333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.62  E-value=0.34  Score=41.46  Aligned_cols=55  Identities=9%  Similarity=0.126  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHH
Q 012695          309 VERMRRELQAVERDIADAEN----ARNEWESKTWDLDSKLGRKFKELEALSMECNQAMK  363 (458)
Q Consensus       309 i~rmn~E~~~L~~~i~~l~~----~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~  363 (458)
                      ++.+...+..|+..|..++.    ++..++..+..+|.++.+...+++..+.+|..++.
T Consensus        54 l~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           54 LQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555544333    44556666777777777777777777777776653

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=92.88  E-value=1.7  Score=44.95  Aligned_cols=10  Identities=30%  Similarity=0.607  Sum_probs=4.2

Q ss_pred             HHHHHHHHHH
Q 012695          315 ELQAVERDIA  324 (458)
Q Consensus       315 E~~~L~~~i~  324 (458)
                      ++++|+.+|+
T Consensus       146 kIQRLEvDId  155 (562)
T 3ghg_A          146 DMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.46  E-value=3.4  Score=34.14  Aligned_cols=55  Identities=20%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHhhHHHHHHHHHHHHHHHHHh
Q 012695          310 ERMRRELQAVERDIADAENARNEWESKTWDLDSKLGRKFKELEALSMECNQAMKR  364 (458)
Q Consensus       310 ~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~~e~~~~~~~~~lE~~v~~yN~~~~~  364 (458)
                      ..+..|+..|...-+.+...+.++++...++|.+-......++++=..||..+-+
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr   92 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER   92 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3344444444444445555555555555556665555666777777777776654

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=92.28  E-value=6  Score=40.45  Aligned_cols=37  Identities=30%  Similarity=0.282  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          259 ELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       259 ~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      .++.+...-+++|++++.|+.....+++.+..+++++
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          433 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444455555555555555555555444444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.04  E-value=2.6  Score=32.81  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          257 IGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEE  291 (458)
Q Consensus       257 i~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E  291 (458)
                      ++.++.|+...-..|.-++.|++..+.+...+.++
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e   42 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE   42 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555444554444444443333333333

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=91.97  E-value=1.5  Score=34.72  Aligned_cols=60  Identities=13%  Similarity=0.201  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          275 EREIGKKVEEHKRICEENEEFKKRVKLQTI---NARDVERMRRELQAVERDIADAENARNEWE  334 (458)
Q Consensus       275 ~~el~~~~~el~~l~~E~~~L~~~v~~Q~~---S~~di~rmn~E~~~L~~~i~~l~~~~~~l~  334 (458)
                      +.|++.....|..++.++..|+..+..-.+   +.+.+..+..++..++..++.+..+..+|+
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe   83 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777788888889999999999988765   466777777788888887777776665554

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=91.32  E-value=5  Score=41.37  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=10.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHH
Q 012695          205 LEKEKENVSEYVEELKKKVSEME  227 (458)
Q Consensus       205 l~~~~~~~~e~~~~L~~e~~eLe  227 (458)
                      |.+.-..+...++.|+..+.+|+
T Consensus        91 L~k~q~~V~~~LqeLe~~l~~ls  113 (464)
T 1m1j_B           91 LLKQEKTVKPVLRDLKDRVAKFS  113 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHhHHHHHHHHHHHHh
Confidence            33333444445555555555544

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.14  E-value=1.9  Score=37.18  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          248 EDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       248 ~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      +|+-+.+.-++.++..++.+.+.+..++.++.....+++.+..++.+|
T Consensus        68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l  115 (138)
T 3hnw_A           68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL  115 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444433333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.91  E-value=4  Score=31.76  Aligned_cols=63  Identities=21%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          265 EKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       265 ~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      .+++.+|...-+.+.-.+.+++.++.++..|.          ++.+.....++.|.+.+..+......++.++
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~----------~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl   71 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLS----------QEVQNAQHQREELERENNHLKEQQNGWQERL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555553          2344444455555555555555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.07  E-value=4.3  Score=41.75  Aligned_cols=34  Identities=9%  Similarity=0.045  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695          306 ARDVERMRRELQAVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       306 ~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      .++++++..|.+++++.+.++..++.+..++..+
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (487)
T 3oja_A          441 QHKETQLAEENARLKKLNGEADLALASANATLQE  474 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence            4556666666666666666666665555554443

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=89.81  E-value=4.1  Score=34.39  Aligned_cols=33  Identities=15%  Similarity=0.170  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK  450 (458)
Q Consensus       418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q  450 (458)
                      .++..++.+.+.+..++.++..++..++++-++
T Consensus        99 ~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~  131 (133)
T 1fxk_C           99 ELESTLQKMGENLRAITDIMMKLSPQAEELLAA  131 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            444555555566666666666666666655443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.71  E-value=7.4  Score=31.88  Aligned_cols=24  Identities=4%  Similarity=0.148  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          307 RDVERMRRELQAVERDIADAENAR  330 (458)
Q Consensus       307 ~di~rmn~E~~~L~~~i~~l~~~~  330 (458)
                      +|.++++.|+++|..++..+..+.
T Consensus        83 adREkl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           83 HAREKLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHH
Confidence            455555666666655555544443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=89.55  E-value=2.5  Score=36.75  Aligned_cols=45  Identities=13%  Similarity=0.088  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 012695          268 EKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRR  314 (458)
Q Consensus       268 e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~  314 (458)
                      ...+..++-++...+..+..+++|+..|-.+.=.+.-  .|+++||.
T Consensus       102 ~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~--qEAe~MN~  146 (152)
T 3a7p_A          102 NAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE--KETEAMNS  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            3333334444444444455555555555444333332  34444443

>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}

Probab=88.97  E-value=9.8  Score=32.28  Aligned_cols=106  Identities=12%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          253 FNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK---LQTINARDVERMRRELQAVERDIADAENA  329 (458)
Q Consensus       253 f~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~---~Q~~S~~di~rmn~E~~~L~~~i~~l~~~  329 (458)
                      |+..++--+.........+.....+++.....+..+.....++...+.   ..++|+.++...+.=+..|...|......
T Consensus        10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~   89 (150)
T 3ajw_A           10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQ   89 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555566667777777777788888888888877777665   36889999888888888888888877777


Q ss_pred             HHHHHHHhhHHHhHH---hhHHHHHHHHHHHH
Q 012695          330 RNEWESKTWDLDSKL---GRKFKELEALSMEC  358 (458)
Q Consensus       330 ~~~l~~~~~~~e~~~---~~~~~~lE~~v~~y  358 (458)
                      +..++..+......+   ....+.++.+.+.+
T Consensus        90 l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~  121 (150)
T 3ajw_A           90 LTQWTQKVDLALKSWREKKQRLQAWQTLQDRQ  121 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766665544433   23445566665443

>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A

Probab=88.76  E-value=2.6  Score=33.25  Aligned_cols=47  Identities=17%  Similarity=0.283  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~  310 (458)
                      .+++...+++.+++..+...+.+.-++.++++.+.+...|||++|.-
T Consensus        33 leKl~~VveERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~eeL~   79 (86)
T 3nr7_A           33 LEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELL   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            33444445555555555566666777888999999999999999974

>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*

Probab=88.71  E-value=3  Score=39.48  Aligned_cols=39  Identities=8%  Similarity=0.065  Sum_probs=30.8

Q ss_pred             HHHHHHHhccCCCC------CCCCCC-CCCCHHHHHHHHHHHHHcc
Q 012695           65 IRAINAHLSSHSFH------IAFPLK-QVPSVKDITDVIKFLISQL  103 (458)
Q Consensus        65 ~~~I~~fL~~~~f~------~s~k~l-~~PT~KdF~~If~fL~~~i  103 (458)
                      ..+|..+|.+.|++      ++...| +.||.--...||.++...+
T Consensus        16 ~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~   61 (250)
T 2ve7_C           16 VAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIV   61 (250)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            36889999999997      345556 7899988889988888844

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.30  E-value=7.1  Score=33.49  Aligned_cols=64  Identities=16%  Similarity=0.083  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          236 REKLEKEKCVLEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       236 l~~L~~~~~~L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      +-.++.+...|+.++.....-+..+.........++.....+++....++..++.++.+|+..+
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555555555555555555555555555555555555554443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=88.26  E-value=7  Score=40.49  Aligned_cols=26  Identities=12%  Similarity=0.107  Sum_probs=15.1

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 012695          277 EIGKKVEEHK-RICEENEEFKKRVKLQ  302 (458)
Q Consensus       277 el~~~~~el~-~l~~E~~~L~~~v~~Q  302 (458)
                      +.+....|+. +|+..+..|+..|++|
T Consensus       103 dNdNtynE~S~ELRRrIqyLKekVdnQ  129 (562)
T 3ghg_A          103 NRDNTYNRVSEDLRSRIEVLKRKVIEK  129 (562)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444 6666667777666665

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.21  E-value=9  Score=30.88  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          256 IIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRV  299 (458)
Q Consensus       256 yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v  299 (458)
                      -+..+......+..+...++..+...+.....+..++..|+..+
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi   53 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL   53 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34455555555555555565555555555555555555555554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.88  E-value=6.6  Score=30.34  Aligned_cols=11  Identities=27%  Similarity=0.256  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHH
Q 012695          240 EKEKCVLEEDL  250 (458)
Q Consensus       240 ~~~~~~L~~D~  250 (458)
                      .++...|+.|.
T Consensus         5 kkKm~~lk~e~   15 (81)
T 1ic2_A            5 KKKMQMLKLDK   15 (81)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444444

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.30  E-value=3.5  Score=34.09  Aligned_cols=44  Identities=16%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012695          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTI  304 (458)
Q Consensus       261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~  304 (458)
                      +.+.++++.+|..+...|.....+++.+..++..|..+|..++.
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~~  113 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKKY  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhccc
Confidence            44566677777777777777777888888888888888877774

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=86.94  E-value=10  Score=30.18  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=14.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHh
Q 012695          205 LEKEKENVSEYVEELKKKVSEMEG  228 (458)
Q Consensus       205 l~~~~~~~~e~~~~L~~e~~eLe~  228 (458)
                      |....+++.+.+..|+++...||.
T Consensus        14 LNdRlAsyIdKVR~LEqqN~~Le~   37 (93)
T 3s4r_A           14 LNDRFANLIDKVRFLEQQNKILLA   37 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555666667776666663

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.04  E-value=4.3  Score=32.40  Aligned_cols=28  Identities=7%  Similarity=0.193  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          307 RDVERMRRELQAVERDIADAENARNEWE  334 (458)
Q Consensus       307 ~di~rmn~E~~~L~~~i~~l~~~~~~l~  334 (458)
                      +|.+||+.+++.|...+..+..+...+.
T Consensus        61 adREkl~~eKe~L~~ql~~lq~q~~~L~   88 (94)
T 3jsv_C           61 HAREKLVEKKEYLQEQLEQLQREFNKLK   88 (94)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666665555544443

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=84.94  E-value=6.2  Score=26.20  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=28.9

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          299 VKLQTINARDVERMRRELQAVERDIADAENARNEW  333 (458)
Q Consensus       299 v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l  333 (458)
                      +...++|+++...+..|.+.|++.+..+...+..+
T Consensus        12 lkkegfspeelaaleselqalekklaalksklqal   46 (48)
T 1g6u_A           12 LKKEGFSPEELAALESELQALEKKLAALKSKLQAL   46 (48)
T ss_dssp             HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34579999999999999999999888887776544

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=84.60  E-value=7.1  Score=28.11  Aligned_cols=52  Identities=13%  Similarity=0.103  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          249 DLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       249 D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      .+.+++.++..+..........+......+......++.+..++..++.+|.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~   57 (60)
T 3htk_A            6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555556666666666666666666666666777777777777766553

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=84.59  E-value=14  Score=29.57  Aligned_cols=16  Identities=6%  Similarity=0.208  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q 012695          280 KKVEEHKRICEENEEF  295 (458)
Q Consensus       280 ~~~~el~~l~~E~~~L  295 (458)
                      ....++..++.+...|
T Consensus        22 ~L~~eL~~lEke~~~l   37 (96)
T 3q8t_A           22 RLIQELEDVEKNRKVV   37 (96)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHH
Confidence            3333333333333333

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=84.53  E-value=16  Score=30.19  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Q 012695          285 HKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDI  323 (458)
Q Consensus       285 l~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i  323 (458)
                      ++.++.|+..|...+.+.   -++++|+.++.+.+.-.|
T Consensus        73 vqeLqgEI~~Lnq~Lq~a---~ae~erlr~~~~~~~~r~  108 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDA---SAEVERLRRENQVLSVRI  108 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHhhchhhhhHh
Confidence            444455555554444333   234455544444444333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=84.19  E-value=16  Score=30.07  Aligned_cols=65  Identities=8%  Similarity=0.068  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          260 LNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENAR  330 (458)
Q Consensus       260 ~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~  330 (458)
                      |..+.+.....+..|...+...+..+..+++.-...+..|..|      +-++...|+.+...+..+....
T Consensus        36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~q------L~~Lt~~Re~V~~eL~rLQ~eN  100 (112)
T 1x79_B           36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQ------MAVLMQSREQVSEELVRLQKDN  100 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Confidence            7777888888888888888888888888887777776665543      3344444444444444443333

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=84.18  E-value=20  Score=36.36  Aligned_cols=14  Identities=7%  Similarity=0.069  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q 012695          214 EYVEELKKKVSEME  227 (458)
Q Consensus       214 e~~~~L~~e~~eLe  227 (458)
                      ..++.|+..+.+++
T Consensus        38 ~~l~~LE~~l~els   51 (409)
T 1m1j_C           38 GELLEIEGLLQQAT   51 (409)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            34444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=84.15  E-value=16  Score=29.91  Aligned_cols=42  Identities=7%  Similarity=0.083  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          293 EEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       293 ~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      .=|+.+++..   .+|+..=...|+++...++.+..++..++.++
T Consensus        65 ~vLkaQv~IY---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           65 PVLKAQADIY---KADFQAERHAREKLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            3455555443   35666666667777777777777666666554

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.10  E-value=13  Score=28.70  Aligned_cols=67  Identities=9%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          269 KLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW  338 (458)
Q Consensus       269 ~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~  338 (458)
                      +++..++.+.+........++.+..........-   -.+|.-+++.+..|+.+++.++.++.....++.
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~---E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQL---EDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444443332221   134444555555555555555555544444433

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=83.96  E-value=1.3  Score=31.71  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=30.6

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          295 FKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKTW  338 (458)
Q Consensus       295 L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~~  338 (458)
                      +++-+...+-+..|++.+..|.+.|+..++.+..+.+++..++.
T Consensus         7 Ik~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A            7 LKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555667889999999999999999999999988887654

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=83.86  E-value=7.1  Score=32.70  Aligned_cols=40  Identities=10%  Similarity=0.181  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          261 NMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       261 ~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      +..+..+...|..|+.+|+...........+++.|+..++
T Consensus        39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555555555555554444444445555544433

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=83.66  E-value=5.4  Score=34.50  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          418 SLQQQSSEMAAKIEGKRKRIDALQFHINEVSAK  450 (458)
Q Consensus       418 ~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q  450 (458)
                      .++..++.+.+.+..++..+..++..++++-++
T Consensus       109 ~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~  141 (151)
T 2zdi_C          109 EYDEAIKKTQGALAELEKRIGEVARKAQEVQQK  141 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=83.10  E-value=17  Score=29.41  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEF  295 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L  295 (458)
                      ...+..++..+.......+.++..+......|
T Consensus        12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l   43 (112)
T 1l8d_A           12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL   43 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444444444433

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=83.06  E-value=14  Score=28.50  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          246 LEEDLNKFNAIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       246 L~~D~~Kf~~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      |-.++.-+.--|..|++....++.++..-++|+...+.+++.-..+++.|+.++-
T Consensus        24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~   78 (81)
T 3qh9_A           24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            3334444444456666666777777777777777777777777777777776653

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=82.96  E-value=5.4  Score=26.84  Aligned_cols=39  Identities=26%  Similarity=0.337  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          255 AIIGELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVK  300 (458)
Q Consensus       255 ~yi~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~  300 (458)
                      +|+.+++.+...++.+..++++.       +..++.|+.-|++.|.
T Consensus         3 aYl~eLE~r~k~le~~naeLEer-------vstLq~EN~mLRqvl~   41 (42)
T 2oqq_A            3 AYLSELENRVKDLENKNSELEER-------LSTLQNENQMLRHILK   41 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHhc
Confidence            68888888888888777776544       5677788888877764

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=82.93  E-value=6.9  Score=28.83  Aligned_cols=47  Identities=21%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012695          408 SSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLF  454 (458)
Q Consensus       408 ~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~  454 (458)
                      .+..+.++...|+..+..++....+++.+++.|+.++..|.+-+.++
T Consensus        17 ~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e~   63 (63)
T 1ci6_A           17 YRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV   63 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            33444577888999999999999999999999999999888877653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=82.74  E-value=40  Score=35.80  Aligned_cols=18  Identities=22%  Similarity=0.134  Sum_probs=8.5

Q ss_pred             CCChHHHHHHHHHHHHHH
Q 012695          139 PHNWPAYLALIHWLVQIA  156 (458)
Q Consensus       139 pHsWP~~Lg~L~WLv~l~  156 (458)
                      +-+=|.|..++.=+|+.+
T Consensus       287 ~vtG~~L~~l~~~yv~ai  304 (592)
T 1f5n_A          287 QVNGPRLESLVLTYVNAI  304 (592)
T ss_dssp             ECBHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            334445555544444444

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=82.56  E-value=6.7  Score=29.78  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          416 LISLQQQSSEMAAKIEGKRKRIDALQFHINE  446 (458)
Q Consensus       416 ~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~  446 (458)
                      +...+..|..+...|.++..+|..|+.++++
T Consensus        35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           35 LRQRDALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555555555444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.26  E-value=15  Score=30.84  Aligned_cols=12  Identities=8%  Similarity=0.044  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHH
Q 012695          350 ELEALSMECNQA  361 (458)
Q Consensus       350 ~lE~~v~~yN~~  361 (458)
                      .|+.=|..|.++
T Consensus       114 ~Ld~EIatYRkL  125 (129)
T 3tnu_B          114 ALDVEIATYRKL  125 (129)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            344445555544

>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A

Probab=82.25  E-value=23  Score=36.06  Aligned_cols=13  Identities=0%  Similarity=0.496  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHH
Q 012695          215 YVEELKKKVSEME  227 (458)
Q Consensus       215 ~~~~L~~e~~eLe  227 (458)
                      .+..|...+.++.
T Consensus        66 rI~kLkn~L~~~s   78 (491)
T 1m1j_A           66 RIDNIRQQLADSQ   78 (491)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444444

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=82.15  E-value=5  Score=30.45  Aligned_cols=47  Identities=11%  Similarity=-0.038  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012695          409 SVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKKFLFL  455 (458)
Q Consensus       409 ~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~~~~~  455 (458)
                      ..+.++.+..-.++|....+.|+++..++...+..++.|..+|+.|-
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444555566666777777888888888888888888888888883

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=81.98  E-value=22  Score=29.95  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          258 GELNMRKEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESKT  337 (458)
Q Consensus       258 ~~~~~k~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~~  337 (458)
                      +.++.+....++.|..+.+|+...+..++......++--.+-..|.+.+.....+.....+-...++.+...+-.+.+.+
T Consensus        49 DQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKEL  128 (167)
T 4gkw_A           49 DQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKEL  128 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555554444444444433333333333333332222232222222233344444444455555


Q ss_pred             hHHHhHHhhHHHHHHHHHHH
Q 012695          338 WDLDSKLGRKFKELEALSME  357 (458)
Q Consensus       338 ~~~e~~~~~~~~~lE~~v~~  357 (458)
                      .+.-+......+.+|.+-.+
T Consensus       129 EdEklK~~E~MdSFE~LkvE  148 (167)
T 4gkw_A          129 ENEKLKAAENMDSFEKLSME  148 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            55555555566666655433

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=81.18  E-value=53  Score=33.82  Aligned_cols=38  Identities=18%  Similarity=0.151  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKL  301 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~  301 (458)
                      .+.+++++.+.+++-.+.+.|.+.|++.++..+...+.
T Consensus        29 ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~   66 (497)
T 3iox_A           29 KAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA   66 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777776666666777777666666555443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.93  E-value=20  Score=28.76  Aligned_cols=14  Identities=29%  Similarity=0.468  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHH
Q 012695          282 VEEHKRICEENEEF  295 (458)
Q Consensus       282 ~~el~~l~~E~~~L  295 (458)
                      +.+...+..|.++|
T Consensus        46 E~~~~~ie~ElEeL   59 (97)
T 2eqb_B           46 EEEADKLNKEVEDL   59 (97)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=80.89  E-value=17  Score=30.58  Aligned_cols=13  Identities=15%  Similarity=0.138  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHH
Q 012695          350 ELEALSMECNQAM  362 (458)
Q Consensus       350 ~lE~~v~~yN~~~  362 (458)
                      .|+.=|..|.+++
T Consensus       116 ~Ld~EIatYRkLL  128 (131)
T 3tnu_A          116 RLEQEIATYRRLL  128 (131)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhH
Confidence            4444455665553

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.88  E-value=8.5  Score=27.99  Aligned_cols=45  Identities=11%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          407 RSSVEKLEELISLQQQSSEMAAKIEGKRKRIDALQFHINEVSAKK  451 (458)
Q Consensus       407 ~~~~~~~~e~~~l~~~l~~~~~~i~~k~~e~~~Le~~~~~l~~q~  451 (458)
                      ..+.-+.+....|+..++.++....+++.+|..|..++..|.+.+
T Consensus        15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455578889999999999999999999999999999888765

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=80.07  E-value=24  Score=29.07  Aligned_cols=47  Identities=9%  Similarity=0.155  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 012695          264 KEKMEKLVEEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVE  310 (458)
Q Consensus       264 ~~~~e~~l~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~  310 (458)
                      +..++..+..+...-+.....+..+++.+.+|...-..-..|.+|++
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E   83 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE   83 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence            33344444444444444444445555555555444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	90.49
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	87.88
d1lrza1	65	Methicillin resistance protein FemA probable tRNA-	85.78

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.49  E-value=1.5  Score=35.06  Aligned_cols=31  Identities=3%  Similarity=0.072  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 012695          309 VERMRRELQAVERDIADAENARNEWESKTWD  339 (458)
Q Consensus       309 i~rmn~E~~~L~~~i~~l~~~~~~l~~~~~~  339 (458)
                      ++++....+.++..++.+..++..+.....+
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e   33 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISE   33 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666666555444

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=87.88  E-value=2.9  Score=32.19  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          272 EEKEREIGKKVEEHKRICEENEEFKKRVKLQTINARDVERMRRELQAVERDIADAENARNEWESK  336 (458)
Q Consensus       272 ~~l~~el~~~~~el~~l~~E~~~L~~~v~~Q~~S~~di~rmn~E~~~L~~~i~~l~~~~~~l~~~  336 (458)
                      ..+..+......+++.++.++..+-+.|..  ...++.+.+..+...|...|..++....+++.+
T Consensus        31 ~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k--~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~   93 (110)
T d1seta1          31 LALDREVQELKKRLQEVQTERNQVAKRVPK--APPEEKEALIARGKALGEEAKRLEEALREKEAR   93 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHGGG--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555566666777777777753  446666666666666666666555555544444

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Methicillin resistance protein FemA probable tRNA-binding arm
domain: Methicillin resistance protein FemA probable tRNA-binding arm
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.78  E-value=2.4  Score=29.89  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012695          253 FNAIIGELNMRKEKMEKLVEEKEREIG  279 (458)
Q Consensus       253 f~~yi~~~~~k~~~~e~~l~~l~~el~  279 (458)
                      |.+|+..++.+...+.+.|..+.+.|+
T Consensus         1 F~eYl~~L~~~~~~L~~~i~k~~~~le   27 (65)
T d1lrza1           1 FDEYIKELNEERDILNKDLNKALKDIE   27 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888877776665