Citrus Sinensis ID: 012699

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MKLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEEccccEEEEccccccEEEEEcccccccccEEEEEcccccEEEEEccccccccccccEEEEEccccEEEEEcccccEEEEEcccccEEEcccccccEEcccccccccEEEEEEcccccEEEEccccccEEEEEcccccccEEcccccccccEEEEEEEEccccEEEEEEccccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEccccccccccEEEEccccccEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcc
Coil and Loop (DISEMBL)
MKLSQLQALLEEKEAQLSRLKNnsetikyanigqtknstlasgvneeslllstnsseaCATTAthmgsaemgqtwassrpalsrfatnmsgndsispsklefedvgagdIIQMFNdglytengrdaqgeedfpeVKVDFLETflghtspisccrfsssgnniasasvdgtvriwtydsstpasrnatiycgteimslewecKSDRLLLIGTAdggikawnVDAKRVvcdlnttdafpsvldlkcspvepifVSAAAsrrygssniysWGFASLTVWNMKTWKAmtvlplgedppaitslcfnhngkiLAASAVDGMIHMFDMsaglqitgwpahdsaissilfgpdetsifslgsdgkIIEWSLQNQGQvlwtrncsrfcdpesskscrhemaldvngRRLLVtsgsvrapiyqvrghasgmrtlphgaaittvdwhptlpmfltgsadhSVQVMSLS
Flexible Loop (DISEMBL)
MKLSQLQALLEEKEAQLSRLknnsetikyanigqtknstlaSGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTydsstpasrnatIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAfpsvldlkcspVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Low Complexity Region (SEG)
MklsqlqalleekeaqlsRLKNNSETIKYANIGQTKNSTLASGVneeslllstnsseACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Disordered region (IsUnstruct)
******************************************************************************************************EDVGAGDIIQMFNDGLYTEN********DFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW******************IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP*****CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG************
Disordered Region (DISOPRED)
*KLSQLQALLEEKEA******NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Disordered Region (DISEMBL)
MKLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Disordered Region (DISPRO)
MKLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKxxxxxxxxxxxxxxxxxxxxxxxxxxxxNIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q55FJ2	766	WD repeat-containing prot	yes	no	0.644	0.385	0.338	2e-45
Q6TEN6	724	WD repeat-containing prot	yes	no	0.685	0.433	0.316	3e-40
Q05B30	751	WD repeat-containing prot	yes	no	0.685	0.418	0.302	3e-38
A4D1P6	747	WD repeat-containing prot	yes	no	0.685	0.420	0.299	5e-38
Q5R6T6	712	WD repeat-containing prot	yes	no	0.685	0.441	0.299	7e-38
Q5ZLL7	751	WD repeat-containing prot	yes	no	0.674	0.411	0.292	1e-37
Q2HJE1	746	WD repeat-containing prot	yes	no	0.685	0.420	0.302	2e-37
Q7TMQ7	748	WD repeat-containing prot	yes	no	0.718	0.439	0.301	5e-37
B2RYI0	747	WD repeat-containing prot	yes	no	0.526	0.322	0.349	6e-37
Q8N0X2	631	Sperm-associated antigen	no	no	0.449	0.326	0.275	4e-13

>sp|Q55FJ2|WDR91_DICDI WD repeat-containing protein 91 homolog OS=Dictyostelium discoideum GN=wdr91 PE=4 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 172/316 (54%), Gaps = 21/316 (6%)

Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDR 205
           H+S I+ C+F S+G+ IAS+S+DGTVR+W    S   SR  TIYC +E+ SLEWE +S +
Sbjct: 463 HSSAITRCKFLSNGSKIASSSIDGTVRLWNVGFS---SRQTTIYCLSEVASLEWENRS-K 518

Query: 206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNI 265
           LLL GT D  IK WN    + + D+NT+  FP V D+ C+P    F +++ +       +
Sbjct: 519 LLLCGTIDSKIKIWNSLTDKAIGDINTSIEFPRVEDIACNPNGNSFATSSINNGRTDGVV 578

Query: 266 YSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG 325
           Y+W        N++T K  T   L      I S+ FN  G +L+   VDG I +FD+ +G
Sbjct: 579 YTW--------NLRTLK--TEEKLSSSGAVINSMSFNSTGTLLSTGCVDGTIRIFDIKSG 628

Query: 326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF-CDPES 384
             I GW AH + I S+ F  DE  ++SLG DGK+ +W++ + G+ +   +   F  DP  
Sbjct: 629 SPIAGWQAHSNEILSVQFSSDENRLYSLGKDGKLYQWNIHSMGKPVKEYDYPGFLVDPHR 688

Query: 385 SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP--M 442
           +     +++ + N    LV + +  A +Y +   +  ++   H   + T DW+ +    +
Sbjct: 689 TT----KISFNHNQSSFLVGTNNKFALLYNIDQSSPILQISGHTGPVVTCDWNSSSQSDV 744

Query: 443 FLTGSADHSVQVMSLS 458
            +TGS D ++++  LS
Sbjct: 745 IITGSLDKTIRLTKLS 760

Dictyostelium discoideum (taxid: 44689)

>sp|Q6TEN6|WDR91_DANRE WD repeat-containing protein 91 OS=Danio rerio GN=wdr91 PE=1 SV=2

 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 24/338 (7%)

Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
           E +  H S I  CR   SG  +AS  VDG V++W ++        ATI   + ++SLEW 
Sbjct: 385 EEYGEHHSSIMHCRVDCSGRRVASLDVDGVVKVWAFNPIM--QTKATIMSKSPLLSLEWA 442

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260
            K DRLLL+G+  G +K ++ DAK+ + ++   D  P +L L CSP    FV +AA+   
Sbjct: 443 AKPDRLLLLGSGVGTVKLYDTDAKKCLYEMTIDDVHPRILSLACSPSGTSFVCSAAAHSG 502

Query: 261 GSSNIYSWGFA----SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
                   G A     L +W+ KT K      L   P AI    FNHNG +L   A DG+
Sbjct: 503 AVMESEPRGSAPVSGQLLLWDTKTVKQQLQFALEPGPVAINCTAFNHNGNLLVTGAADGI 562

Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ----NQGQVLW 372
           I +FDM        W AHD  + S+ F  DE ++FS+G DGK ++W++      Q +   
Sbjct: 563 IRLFDMQRYESALSWKAHDGEVYSVEFSYDENTVFSIGEDGKFVQWNIHRCGVKQSEYSL 622

Query: 373 TRNC------SRFCDPESSKSCRHEM-ALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL 425
           +++       S +   +  +  R  + A D  G+ +L T  S    IY++    +G+ ++
Sbjct: 623 SQDAVGPFVLSGYSGYKQVQVPRGRLFAFDSEGQHVL-TCSSTGGNIYRLNKAEAGLESV 681

Query: 426 ----PHGAAITTVDWHPTLP--MFLTGSADHSVQVMSL 457
                H A + TVDW   +     LT S D  +++ +L
Sbjct: 682 LSLAGHKAPVVTVDWCSAMDCGTCLTASMDGKIKLSTL 719

Danio rerio (taxid: 7955)

>sp|Q05B30|WDR91_XENTR WD repeat-containing protein 91 OS=Xenopus tropicalis GN=wdr91 PE=2 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 161/344 (46%), Gaps = 30/344 (8%)

Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
           + +  H S I  CR   SG  +AS  VDG ++IW+ D        A+    + ++SLEW 
Sbjct: 406 DEYAEHHSSIMHCRVDCSGRRVASLDVDGVIKIWSLDGIMQT--KASAISKSALLSLEWA 463

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260
            K DRLLL+G+  G ++ ++ +AK+ +C++   +  P +L L CSP    FV +AA+   
Sbjct: 464 TKRDRLLLLGSEVGTVRLYDTEAKKNLCEIGIVEDMPRILSLACSPSGASFVCSAAAATS 523

Query: 261 GSSN---IYSWGFA-------SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
            S      YS+G +        L +W+ KT K      L   P A+    FNHNG +L  
Sbjct: 524 PSQTDPTYYSYGESGNNQVPGKLLLWDTKTMKQQLQFSLEPVPIAVNCTAFNHNGNLLVT 583

Query: 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
            A DG I +FDM        W AH   + S+ F  DE +++S+G DGK I+W +   GQ 
Sbjct: 584 GAADGFIRLFDMQQHQCALSWKAHMGEVYSVDFSYDENAVYSIGEDGKFIQWDIHKSGQK 643

Query: 371 LWTRN----------CSRFCDPESSKSCRHEM-ALDVNGRRLLVTSGSVRAPIYQVRGHA 419
           +   +           S +   +  +  R  + A D  G+ +L T  S    IY++    
Sbjct: 644 VSEYSLPSDATGPFMLSGYSGYKQVQFPRGRLFAFDSEGKYML-TCSSTGGVIYKLNSDG 702

Query: 420 SGMRTL----PHGAAITTVDWHPTLP--MFLTGSADHSVQVMSL 457
           S +        H A + TVDW   +     LT S D  +++ +L
Sbjct: 703 STLENCLSLGGHRAPVVTVDWSTAVECGTCLTASMDGKIKLTTL 746

Xenopus tropicalis (taxid: 8364)

>sp|A4D1P6|WDR91_HUMAN WD repeat-containing protein 91 OS=Homo sapiens GN=WDR91 PE=1 SV=2

 Score =  159 bits (401), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 165/344 (47%), Gaps = 30/344 (8%)

Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
           E +  H S I  CR   SG  +AS  VDG +++W+++        A+    + ++SLEW 
Sbjct: 402 EEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIM--QTKASSISKSPLLSLEWA 459

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR- 259
            K DRLLL+G+  G ++ ++ +AK+ +C++N  D  P +L L CSP    FV +AA+   
Sbjct: 460 TKRDRLLLLGSGVGTVRLYDTEAKKNLCEININDNMPRILSLACSPNGASFVCSAAAPSL 519

Query: 260 -----YGSSNIYSWGF----ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
                + + +I S G       L +W+ KT K      L  +P AI    FNHNG +L  
Sbjct: 520 TSQVDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDPEPIAINCTAFNHNGNLLVT 579

Query: 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
            A DG+I +FDM        W AH   + S+ F  DE +++S+G DGK I+W++   G  
Sbjct: 580 GAADGVIRLFDMQQHECAMSWRAHYGEVYSVEFSYDENTVYSIGEDGKFIQWNIHKSGLK 639

Query: 371 LWTRN----------CSRFCDPESSKSCRHEM-ALDVNGRRLLVTSGSVRAPIYQVRGHA 419
           +   +           S +   +  +  R  + A D  G  +L  S +    IY++ G  
Sbjct: 640 VSEYSLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSAT-GGVIYKLGGDE 698

Query: 420 SGMRTL----PHGAAITTVDWHPTLP--MFLTGSADHSVQVMSL 457
             + +      H A + TVDW   +     LT S D  +++ +L
Sbjct: 699 KVLESCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTTL 742

Homo sapiens (taxid: 9606)

>sp|Q5R6T6|WDR91_PONAB WD repeat-containing protein 91 OS=Pongo abelii GN=WDR91 PE=2 SV=1

 Score =  158 bits (400), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 165/344 (47%), Gaps = 30/344 (8%)

Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
           E +  H S I  CR   SG  +AS  VDG +++W+++        A+    + ++SLEW 
Sbjct: 367 EEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIM--QTKASSISKSPLLSLEWA 424

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR- 259
            K DRLLL+G+  G ++ ++ +AK+ +C++N  D  P +L L CSP    FV +AA+   
Sbjct: 425 TKRDRLLLLGSGVGTVRLYDTEAKKNLCEININDDMPRILSLACSPNGASFVCSAAAPSL 484

Query: 260 -----YGSSNIYSWGF----ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
                + + +I S G       L +W+ KT K      L  +P AI    FNHNG +L  
Sbjct: 485 TSQVDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDPEPIAINCTAFNHNGNLLVT 544

Query: 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
            A DG+I +FDM        W AH   + S+ F  DE +++S+G DGK I+W++   G  
Sbjct: 545 GAADGVIRLFDMQQHECAMSWRAHYGEVYSVEFSYDENTVYSIGEDGKFIQWNIHKSGLK 604

Query: 371 LWTRN----------CSRFCDPESSKSCRHEM-ALDVNGRRLLVTSGSVRAPIYQVRGHA 419
           +   +           S +   +  +  R  + A D  G  +L  S +    IY++ G  
Sbjct: 605 VSEYSLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSAT-GGVIYKLGGDE 663

Query: 420 SGMRTL----PHGAAITTVDWHPTLP--MFLTGSADHSVQVMSL 457
             + +      H A + TVDW   +     LT S D  +++ +L
Sbjct: 664 KVLESCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTTL 707

Pongo abelii (taxid: 9601)

>sp|Q5ZLL7|WDR91_CHICK WD repeat-containing protein 91 OS=Gallus gallus GN=WDR91 PE=2 SV=1

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 165/349 (47%), Gaps = 40/349 (11%)

Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
           E +  H S I  CR   SG  +AS  VDG +++W+++        A+    + ++SLEW 
Sbjct: 406 EEYGEHHSSIMYCRVDCSGRRVASLDVDGVIKVWSFNPIMQT--KASSISKSPLLSLEWA 463

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR-- 258
            K DRLLL+G+  G ++ ++ +AK+ +C+++  +  P +L L CSP    FV +AA++  
Sbjct: 464 TKRDRLLLLGSGVGTVRLYDTEAKKNLCEISIDEDMPRILSLACSPSGASFVCSAAAQSP 523

Query: 259 --RYGSSNIYSWGFA------SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
                 S + S G +       L +W+ KT K      L  +P AI    FNHNG +L  
Sbjct: 524 ISHMDFSVVTSGGKSMNQVPGKLLLWDTKTMKQQLQFSLEPEPIAINCTAFNHNGNLLVT 583

Query: 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
            A DG++ +FDM        W AHD  + S+ F  DE +++S+G DGK I+W++   G  
Sbjct: 584 GAADGIVRLFDMQQHECAMSWKAHDGEVYSVEFSYDENTVYSIGEDGKFIQWNIHKSGLK 643

Query: 371 LWTRNCSRFCDPESS------------KSCRHE----MALDVNGRRLLVTSGSVRAPIYQ 414
           +     S +  P  +            K  +       A D  G  +L T  S    I++
Sbjct: 644 I-----SEYALPSEATGPFVLSGYSGYKQVQFPRGRLFAFDSEGNYML-TCSSTGGVIFK 697

Query: 415 VRGHASGMRTL----PHGAAITTVDWHPTLP--MFLTGSADHSVQVMSL 457
           + G    + +      H A + TVDW   +     LT S D  +++ +L
Sbjct: 698 LNGEDKVLESCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTTL 746

Gallus gallus (taxid: 9031)

>sp|Q2HJE1|WDR91_BOVIN WD repeat-containing protein 91 OS=Bos taurus GN=WDR91 PE=2 SV=2

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 163/344 (47%), Gaps = 30/344 (8%)

Query: 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200
           E +  H S I  CR   SG  +AS  VDG +++W+++        A+    + ++SLEW 
Sbjct: 401 EEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIM--QTKASSISKSPLLSLEWA 458

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-SAAASRR 259
            K DRLLL+G+  G ++ ++ +AK+ +C++N  D  P +L L CSP    FV SAAAS  
Sbjct: 459 TKRDRLLLLGSGVGTVRLYDTEAKKNLCEININDDMPRILSLACSPSGASFVCSAAASSL 518

Query: 260 YGSSNIYSWGFAS---------LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310
               ++ +    S         L +W+ KT K      L  +P AI    FNHNG +L  
Sbjct: 519 TAHVDVLAPDIGSRGTNQVPGRLLLWDTKTMKQQLQFSLDPEPIAINCTAFNHNGNLLVT 578

Query: 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
            A DG+I +FDM        W AH   + S+ F  DE +++S+G DGK I+W++   G  
Sbjct: 579 GAADGVIRLFDMQQHECAMSWKAHCGEVYSVEFSYDENTVYSIGEDGKFIQWNIHKSGLK 638

Query: 371 LWTRN----------CSRFCDPESSKSCRHEM-ALDVNGRRLLVTSGSVRAPIYQVRGHA 419
           +               S +   +  +  R  + A D  G  +L  S +    IY++ G  
Sbjct: 639 VSEYGLPADATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSAT-GGVIYKLGGDD 697

Query: 420 SGMRTLP----HGAAITTVDWHPTLP--MFLTGSADHSVQVMSL 457
             + +      H A + TVDW   +     LT S D  +++ +L
Sbjct: 698 KVLESCVSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTTL 741

Bos taurus (taxid: 9913)

>sp|Q7TMQ7|WDR91_MOUSE WD repeat-containing protein 91 OS=Mus musculus GN=Wdr91 PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 167/361 (46%), Gaps = 32/361 (8%)

Query: 126 AQGEEDFPEVKVDFL--ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS 183
           A  E D PE     L  E +  H S I  CR   SG  +AS  VDG +++W+++      
Sbjct: 386 AGSEGDRPEQPFIVLSQEEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIM--Q 443

Query: 184 RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLK 243
             A+    + ++SLEW  K DRLLL+G+  G ++ ++ +AK+ +C++N  D  P +L L 
Sbjct: 444 TKASSISKSPLLSLEWATKRDRLLLLGSGVGTVRLYDTEAKKNLCEININDDMPRILSLA 503

Query: 244 CSPVEPIFVSAAASRRYGSS------NIYSWGF----ASLTVWNMKTWKAMTVLPLGEDP 293
           CSP    FV +AA+    S       +I S G       L +W+ KT K      L  +P
Sbjct: 504 CSPNGASFVCSAAAPSLTSQTDSSAPDIGSKGMNQVPGKLLLWDTKTMKQQLQFSLDPEP 563

Query: 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353
            AI    FNHNG +L   A DG+I +FDM        W AH   + S+ F  DE +++S+
Sbjct: 564 IAINCTAFNHNGNLLVTGAADGVIRLFDMQQHECAMSWKAHCGEVYSVEFSCDENAVYSI 623

Query: 354 GSDGKIIEWSLQNQGQVLWTRN----------CSRFCDPESSKSCRHEM-ALDVNGRRLL 402
           G D K I+W++   G  +   N           S +   +  +  R  + A D  G  +L
Sbjct: 624 GEDRKFIQWNIHKSGLKVSESNLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYML 683

Query: 403 VTSGSVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLP--MFLTGSADHSVQVMS 456
             S +    IY++      +        H A + TVDW   +     LT S D  +++ +
Sbjct: 684 TCSAT-GGLIYKLGSEEKVLENCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTT 742

Query: 457 L 457
           L
Sbjct: 743 L 743

Mus musculus (taxid: 10090)

>sp|B2RYI0|WDR91_RAT WD repeat-containing protein 91 OS=Rattus norvegicus GN=Wdr91 PE=2 SV=1

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 130/255 (50%), Gaps = 14/255 (5%)

Query: 126 AQGEEDFPEVKVDFL--ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS 183
           A  E D PE     L  E +  H S I  CR   SG  +AS  VDG +++W+++      
Sbjct: 385 AGSEGDRPEQPFIVLSQEEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIM--Q 442

Query: 184 RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLK 243
             A+    + ++SLEW  K DRLLL+G+  G ++ ++ +AK+ +C++N  D  P +L L 
Sbjct: 443 TKASSISKSPLLSLEWATKRDRLLLLGSGVGTVRLYDTEAKKNLCEININDDMPRILSLA 502

Query: 244 CSPVEPIFVSAAASRRYGSS------NIYSWGF----ASLTVWNMKTWKAMTVLPLGEDP 293
           CSP    FV +AA+    S       +I S G       L +W+ KT K      L  +P
Sbjct: 503 CSPNGASFVCSAAAPSLTSQPDSSAPDIGSKGMNQVPGKLLLWDTKTMKQQLQFSLDPEP 562

Query: 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353
            AI    FNHNG +L   A DG+I +FDM        W AH   + S+ F  DE ++ S+
Sbjct: 563 IAINCTAFNHNGNLLVTGAADGVIRLFDMQQHGCAMSWKAHCGEVYSVEFSYDENAVNSI 622

Query: 354 GSDGKIIEWSLQNQG 368
           G DGK I+W++   G
Sbjct: 623 GEDGKFIQWNIHKSG 637

Rattus norvegicus (taxid: 10116)

>sp|Q8N0X2|SPG16_HUMAN Sperm-associated antigen 16 protein OS=Homo sapiens GN=SPAG16 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 23/229 (10%)

Query: 136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE-I 194
           K D + TF GH+  +  C + S GN +AS+S+D T +IW  +S        T+Y  T+ +
Sbjct: 425 KGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIWDVNSERC---RCTLYGHTDSV 481

Query: 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254
            S+E+   S+  LL  +AD  +  W  DA+  +C+ +      S+ D    P   +  S 
Sbjct: 482 NSIEFFPFSN-TLLTSSADKTLSIW--DARTGICEQSLYGHMHSINDAIFDPRGHMIASC 538

Query: 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD 314
            A            G   L  W+ +    +  + +G  P     + F+ +G++LA ++ +
Sbjct: 539 DAC-----------GVTKL--WDFRKLLPIVSIDIGPSPG--NEVNFDSSGRVLAQASGN 583

Query: 315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
           G+IH+ D+ +G +I     H++   +++F  D   +FS GSDG +  WS
Sbjct: 584 GVIHLLDLKSG-EIHKLMGHENEAHTVVFSHDGEILFSGGSDGTVRTWS 631

Necessary for sperm flagellar function. Plays a role in motile ciliogenesis. May help to recruit STK36 to the cilium or apical surface of the cell to initiate subsequent steps of construction of the central pair apparatus of motile cilia.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
255545112	655	conserved hypothetical protein [Ricinus	0.993	0.694	0.727	0.0
302143730	663	unnamed protein product [Vitis vinifera]	0.997	0.689	0.729	0.0
356534079	631	PREDICTED: WD repeat-containing protein	0.965	0.700	0.700	1e-172
357443765	446	WD repeat-containing protein [Medicago t	0.943	0.968	0.681	1e-166
413934048	622	hypothetical protein ZEAMMB73_630847 [Ze	0.930	0.684	0.638	1e-165
449463481	343	PREDICTED: WD repeat-containing protein	0.735	0.982	0.818	1e-164
218196503	583	hypothetical protein OsI_19355 [Oryza sa	0.934	0.734	0.633	1e-163
223944167	382	unknown [Zea mays]	0.740	0.887	0.778	1e-161
293337159	375	uncharacterized protein LOC100384033 [Ze	0.718	0.877	0.793	1e-158
357146592	382	PREDICTED: WD repeat-containing protein	0.740	0.887	0.769	1e-157

>gi|255545112|ref|XP_002513617.1| conserved hypothetical protein [Ricinus communis] gi|223547525|gb|EEF49020.1| conserved hypothetical protein [Ricinus communis]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/463 (72%), Positives = 386/463 (83%), Gaps = 8/463 (1%)

Query: 1   MKLSQLQALLEEKEAQLSRLKNNSET---IKYANIGQTKNSTLASGVNEESLLLSTNSSE 57
           +KLSQLQALLE+KEAQL RL++N+     I   ++GQ  NS  +S V EE+L+      E
Sbjct: 196 VKLSQLQALLEDKEAQLCRLRSNARNAALISDTHVGQASNSIPSSAVLEENLIRPV---E 252

Query: 58  ACATTATHMGSAEMGQTWASSRPA--LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFN 115
           A  +T  +MG+ +     A   PA  LS    +    DS S ++++ ED      IQ  +
Sbjct: 253 AQVSTTQNMGAVDRADERAVGLPAKDLSLSGASKDARDSSSIARIDREDGKTSGTIQTVH 312

Query: 116 DGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175
            G +++NG +  GEE+FPEVKVDF ETFLGHTSPIS CRFS+SGNNIASASVDGTVRIWT
Sbjct: 313 GGPFSDNGTETLGEEEFPEVKVDFQETFLGHTSPISRCRFSASGNNIASASVDGTVRIWT 372

Query: 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA 235
           YDSSTP SRNATIYCG EIMSL+WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT++A
Sbjct: 373 YDSSTPTSRNATIYCGAEIMSLDWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTSEA 432

Query: 236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295
           FPSVLDLKCSPVEP+FVSAAASRR+GSS + S  +ASLTVWNMKTW+A+TVLPLGEDPPA
Sbjct: 433 FPSVLDLKCSPVEPVFVSAAASRRHGSSYLDSLRYASLTVWNMKTWRAITVLPLGEDPPA 492

Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS 355
           ITSLCFNHNGKILAA+A DGMIHMFDMSAGLQITGWPAHDSAI+SILFGPDETSIFSLGS
Sbjct: 493 ITSLCFNHNGKILAAAATDGMIHMFDMSAGLQITGWPAHDSAINSILFGPDETSIFSLGS 552

Query: 356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415
           DGKI EWSLQNQG VLW+R+CSRFCDPE+SK CRHEMA+D NGRRLLVTS +VRAPIYQV
Sbjct: 553 DGKIFEWSLQNQGHVLWSRSCSRFCDPETSKHCRHEMAMDANGRRLLVTSAAVRAPIYQV 612

Query: 416 RGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458
           RG+ +G+RTLPH AA+TTVDWHPTLP+FLTGSAD+SV+V SLS
Sbjct: 613 RGYTNGLRTLPHSAAVTTVDWHPTLPIFLTGSADNSVRVSSLS 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143730|emb|CBI22591.3| unnamed protein product [Vitis vinifera]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/465 (72%), Positives = 382/465 (82%), Gaps = 8/465 (1%)

Query: 1   MKLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNST------LASGVNEESLLLSTN 54
           +KLSQLQALLEEKEAQL + ++ + +    ++G T +ST      L SG+++ S+L S  
Sbjct: 198 LKLSQLQALLEEKEAQLFQSRSYAPSTIEESMGGTNSSTYSVPGTLLSGLHQGSILPSRF 257

Query: 55  SSEACATTATHMGSAEMGQTWASSRPA--LSRFATNMSGNDSISPSKLEFEDVGAGDIIQ 112
             E CA T  H+G  E+ Q    +  A  LS  + + S   S S   L   D GA ++++
Sbjct: 258 PHETCAATNQHLGERELAQELDDTGVAKILSEMSPSNSDRGSSSLVHLHLGDAGASNMLE 317

Query: 113 MFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVR 172
           M  D   TENGR+ +GEE+FPEVKVDF ETFLGHTSPIS CRFS SG+NIASASVDGTVR
Sbjct: 318 MSQDDFCTENGREMEGEEEFPEVKVDFQETFLGHTSPISRCRFSVSGDNIASASVDGTVR 377

Query: 173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232
           IWTYDSSTP SRNATIYCG EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT
Sbjct: 378 IWTYDSSTPTSRNATIYCGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 437

Query: 233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292
           T+AFPSVLDLKCSPVEPIFVSAAASR  G +    +GFASLTVWNMKTWKA+TVLPLGED
Sbjct: 438 TEAFPSVLDLKCSPVEPIFVSAAASRGQGRNYFDKFGFASLTVWNMKTWKAVTVLPLGED 497

Query: 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS 352
           PPAITSLCFNHNGKILAA+A DGMIHMFDMSAGLQITGWPAHDSAISS+LFGPDETSI+S
Sbjct: 498 PPAITSLCFNHNGKILAAAATDGMIHMFDMSAGLQITGWPAHDSAISSLLFGPDETSIYS 557

Query: 353 LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412
           LGSDGKI+EWSL NQGQ+LW+RNCSRFC+ ESS+  RHEM+LD NGRRLLVTSGSVRAPI
Sbjct: 558 LGSDGKILEWSLHNQGQILWSRNCSRFCNIESSRHYRHEMSLDANGRRLLVTSGSVRAPI 617

Query: 413 YQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457
           YQVRGH SG RTLPH AAITTVDWHPTLP+ +TGSADHSV+V S+
Sbjct: 618 YQVRGHTSGWRTLPHTAAITTVDWHPTLPILVTGSADHSVRVTSI 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534079|ref|XP_003535585.1| PREDICTED: WD repeat-containing protein 91-like [Glycine max]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 323/461 (70%), Positives = 362/461 (78%), Gaps = 19/461 (4%)

Query: 1   MKLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA 60
           +KLSQLQALL+EKEAQL + +    +++  + G + N      + EE+  +S +SSE   
Sbjct: 187 LKLSQLQALLDEKEAQLRQFR----SMEGGSTGSSSN------LREETARVSKDSSELFP 236

Query: 61  TTATHMGSAEMGQTWASSRPA--LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGL 118
           T    +G  E+ Q   +       S    + SGNDS +    +    G  D     N  L
Sbjct: 237 TGIPQVGQTEISQDSVAGGLGNIRSELIGSTSGNDSTTFLSNDRMRNGRAD-----NATL 291

Query: 119 YTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178
              NG +  GEEDF EVKV++ ETFLGHT PIS C FS+SGNNIASAS+DGTVRIWTYD+
Sbjct: 292 KDNNG-EVFGEEDFAEVKVEYQETFLGHTGPISRCCFSASGNNIASASLDGTVRIWTYDT 350

Query: 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS 238
           STP SRNATIYCGTEI+SL+WECKSDRLLLIGT+DG IKAWNVDAKRVVCDLNTT+AFPS
Sbjct: 351 STPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPS 410

Query: 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298
           VLD+KCSPVEPIFVSAAAS   GS+ I + GFASLTVWNMKTWKAMTVLPLGEDPPAITS
Sbjct: 411 VLDIKCSPVEPIFVSAAASGGAGSNYIDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITS 470

Query: 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK 358
           LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS+ISSILFGPDETSIFSLGSDGK
Sbjct: 471 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGK 530

Query: 359 IIEWSLQNQGQVLWTRNCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417
           I EWSLQNQGQ+LW+R+ SRFC P   SK CRHEMALD NGRRLLVTS S RAPIYQV G
Sbjct: 531 IFEWSLQNQGQILWSRDSSRFCYPFNDSKYCRHEMALDANGRRLLVTSSSFRAPIYQVHG 590

Query: 418 HASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458
           H SG RTLPHGA IT VDWHPTLP+FLTGSAD+SV+V SLS
Sbjct: 591 HLSGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLS 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443765|ref|XP_003592160.1| WD repeat-containing protein [Medicago truncatula] gi|355481208|gb|AES62411.1| WD repeat-containing protein [Medicago truncatula]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 313/459 (68%), Positives = 354/459 (77%), Gaps = 27/459 (5%)

Query: 1   MKLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA 60
           +KLS+LQALL EKE QL + ++              + + +S + EES  +S +SSE   
Sbjct: 11  IKLSELQALLNEKETQLRQFRS-----------MEGSISSSSNLREESTHVSKDSSE--- 56

Query: 61  TTATHMGSAEMGQTWASSRPA--LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGL 118
                     + Q      P    S F ++ SG+DS        E   AG+     +D  
Sbjct: 57  ----------IDQDLVVGEPGNVQSEFISSKSGDDSTFILNDYLEHGRAGNTTLKGHDSP 106

Query: 119 YTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178
           + EN  +   EEDF EVKV+  ETFLGHTSPIS CRFS+SGNNIASAS+DGT RIWTYD+
Sbjct: 107 HIENDGELSSEEDFVEVKVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDA 166

Query: 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS 238
           STPASRNATIYCGTEI+SL+WECKSDRLLLIGT+D  IKAWNVDAKRVVCDLNTT+AFPS
Sbjct: 167 STPASRNATIYCGTEILSLDWECKSDRLLLIGTSDACIKAWNVDAKRVVCDLNTTEAFPS 226

Query: 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298
           VLD+KCSPVEPIFVSAAAS   GS+   + GFASLTVWNMKTWKAMTVLPLGEDPPAITS
Sbjct: 227 VLDIKCSPVEPIFVSAAASGGSGSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITS 286

Query: 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK 358
           LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS+ISSILFGPDETSIFSLGSDGK
Sbjct: 287 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGK 346

Query: 359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418
           I EWSLQNQGQ+LW+R+CSR+C P SS   RH+MALD NGRRLLVTS S RAPIYQV+GH
Sbjct: 347 IFEWSLQNQGQILWSRDCSRYCYP-SSNYYRHDMALDANGRRLLVTSSSDRAPIYQVQGH 405

Query: 419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457
            +G RTL HGA IT VDWHPTLP+FLTGSAD+SV+V SL
Sbjct: 406 LNGWRTLSHGAPITAVDWHPTLPIFLTGSADNSVRVTSL 444

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413934048|gb|AFW68599.1| hypothetical protein ZEAMMB73_630847 [Zea mays]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/456 (63%), Positives = 347/456 (76%), Gaps = 30/456 (6%)

Query: 2   KLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACAT 61
           KL++LQA LEEKE ++S L+ N  +  Y N      ST  S   E    +S N  E+ A+
Sbjct: 196 KLAELQASLEEKEDEISLLRRNYNSGGYGNKNVVGTSTAGSPHEE----MSENYEESSAS 251

Query: 62  TATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTE 121
           ++   G      +   S     +F  +   N                          +TE
Sbjct: 252 SSMIQGFDSRSSSSVKSYTRGGKFHESSEIN--------------------------HTE 285

Query: 122 NGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP 181
           + +    EE+FPEVKVDF ETFLGH SPIS CRFS+SG+NIAS+S+DGTVRIWTYDSST 
Sbjct: 286 DQQVLVTEEEFPEVKVDFQETFLGHNSPISRCRFSASGSNIASSSIDGTVRIWTYDSSTA 345

Query: 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241
           +SRNATIYCG+E+ +L WEC+SDRLLLIGTA+GGIKAWN DAKRVVCDL+T+  FPS+LD
Sbjct: 346 SSRNATIYCGSEVSALSWECRSDRLLLIGTANGGIKAWNADAKRVVCDLSTSRNFPSILD 405

Query: 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301
           LKCSPVEP+FVSAAASRR+GS+     GFA+LTVW+MKTWK +TVLPLGEDPPAITSLCF
Sbjct: 406 LKCSPVEPVFVSAAASRRHGSTTFERTGFANLTVWHMKTWKPLTVLPLGEDPPAITSLCF 465

Query: 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361
           NHNGKILAASA DGMIHMFDMSAGLQITGWPAHDS +SS+LFGP ETSIFSLGSDGKI+E
Sbjct: 466 NHNGKILAASATDGMIHMFDMSAGLQITGWPAHDSPVSSVLFGPAETSIFSLGSDGKILE 525

Query: 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG 421
           WSL NQGQ+LW+R+CSRFC+PES K+  HE+ALD NG+RLLVTSG VRAPIYQV+GH S 
Sbjct: 526 WSLHNQGQILWSRDCSRFCNPESFKTRMHEIALDSNGKRLLVTSGLVRAPIYQVQGHESE 585

Query: 422 MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457
           +RTLPH ++IT+VDWHPTLPM++TGSADHSV+V S+
Sbjct: 586 LRTLPHSSSITSVDWHPTLPMYITGSADHSVRVTSI 621

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463481|ref|XP_004149462.1| PREDICTED: WD repeat-containing protein 91 homolog [Cucumis sativus] gi|449523658|ref|XP_004168840.1| PREDICTED: WD repeat-containing protein 91 homolog [Cucumis sativus]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/337 (81%), Positives = 304/337 (90%)

Query: 122 NGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP 181
           N  +   +EDFPEVKV+F ETFLGHTSPIS CRFS+SGNN+ASAS+DGTVRIWTYDSSTP
Sbjct: 7   NSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTP 66

Query: 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241
           +SRNATIYCG EIMSL+WECKSDRLLLIGTAD GIKAWNVDAKRVVCDLNTTD FPSVLD
Sbjct: 67  SSRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLD 126

Query: 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301
           +KCSPVE IFVSAAASR +G+S + S GFASLTVWNM+TWK+MTVLPLG+DPPAITS+CF
Sbjct: 127 IKCSPVESIFVSAAASRGHGTSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCF 186

Query: 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361
           NHNGKILAA+A DGMIHMFDMSA LQITGWPAHDSAI+SILFGPDETSIF+LGSDGKI E
Sbjct: 187 NHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFE 246

Query: 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG 421
           WSL NQGQVLW+RN SRFCD ESS S RHEM LD +G+RLL TS SVRAPIYQV G   G
Sbjct: 247 WSLHNQGQVLWSRNNSRFCDSESSLSLRHEMTLDASGKRLLATSNSVRAPIYQVGGRVGG 306

Query: 422 MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458
           ++TLPH AAITTVDWHPTLP+FLTGSADHS++V S+S
Sbjct: 307 LKTLPHTAAITTVDWHPTLPVFLTGSADHSIRVTSIS 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218196503|gb|EEC78930.1| hypothetical protein OsI_19355 [Oryza sativa Indica Group] gi|222631010|gb|EEE63142.1| hypothetical protein OsJ_17950 [Oryza sativa Japonica Group]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/456 (63%), Positives = 341/456 (74%), Gaps = 28/456 (6%)

Query: 2   KLSQLQALLEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACAT 61
           KLS+LQALLE KE ++S+L+ NS  +   N+     S   S +  + +      S A  +
Sbjct: 155 KLSELQALLEMKETEISQLRRNSTGVDLGNMNVPNTSAADSSLEGQDMPGVFEESSASRS 214

Query: 62  TATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTE 121
            A    S       +S+R                        D       Q+ N     E
Sbjct: 215 AAQGFDSQSSSSVKSSTR------------------------DEKLHKSFQISN----AE 246

Query: 122 NGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP 181
           N +    E+DFPEVKVDF ETFLGH S ISCCRFS+SG+N+AS+SVDGTVRIWTYDSSTP
Sbjct: 247 NEQILVTEDDFPEVKVDFQETFLGHNSSISCCRFSASGSNVASSSVDGTVRIWTYDSSTP 306

Query: 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241
           +S+NATIYCG+E+ +L WEC+SDRLLLIGTA+GGIKAWN DAKRVVCDL+T+  FPSVLD
Sbjct: 307 SSKNATIYCGSEVSALSWECRSDRLLLIGTANGGIKAWNADAKRVVCDLSTSKDFPSVLD 366

Query: 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301
           LKCSPVEP+FVSAAASRR GS+     GFASLTVW+MKTWK +TVLPLGEDPPAITS+CF
Sbjct: 367 LKCSPVEPVFVSAAASRRPGSTIFDRTGFASLTVWHMKTWKPLTVLPLGEDPPAITSVCF 426

Query: 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361
           NHNGKILAASA DGMIHMFDMSAGLQITGWPAHDS +SS+LFGP ETSIFSLGSDGKI E
Sbjct: 427 NHNGKILAASATDGMIHMFDMSAGLQITGWPAHDSPVSSVLFGPAETSIFSLGSDGKIFE 486

Query: 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG 421
           WSL NQGQ+LW+R+CSRFC PES     HE++LD +G+RLLVTSG VRAPIYQV+GH SG
Sbjct: 487 WSLHNQGQILWSRDCSRFCSPESFSKRMHEISLDSDGKRLLVTSGLVRAPIYQVQGHESG 546

Query: 422 MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457
           +RTL H A+IT+VDWHPTLPM++TGSAD+SV+V S+
Sbjct: 547 LRTLAHSASITSVDWHPTLPMYITGSADNSVRVTSI 582

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223944167|gb|ACN26167.1| unknown [Zea mays]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 264/339 (77%), Positives = 306/339 (90%)

Query: 119 YTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178
           +TE+ +    EE+FPEVKVDF ETFLGH SPIS CRFS+SG+NIAS+S+DGTVRIWTYDS
Sbjct: 43  HTEDQQVLVTEEEFPEVKVDFQETFLGHNSPISRCRFSASGSNIASSSIDGTVRIWTYDS 102

Query: 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS 238
           ST +SRNATIYCG+E+ +L WEC+SDRLLLIGTA+GGIKAWN DAKRVVCDL+T+  FPS
Sbjct: 103 STASSRNATIYCGSEVSALSWECRSDRLLLIGTANGGIKAWNADAKRVVCDLSTSRNFPS 162

Query: 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298
           +LDLKCSPVEP+FVSAAASRR+GS+     GFA+LTVW+MKTWK +TVLPLGEDPPAITS
Sbjct: 163 ILDLKCSPVEPVFVSAAASRRHGSTTFERTGFANLTVWHMKTWKPLTVLPLGEDPPAITS 222

Query: 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK 358
           LCFNHNGKILAASA DGMIHMFDMSAGLQITGWPAHDS +SS+LFGP ETSIFSLGSDGK
Sbjct: 223 LCFNHNGKILAASATDGMIHMFDMSAGLQITGWPAHDSPVSSVLFGPAETSIFSLGSDGK 282

Query: 359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418
           I+EWSL NQGQ+LW+R+CSRFC+PES K+  HE+ALD NG+RLLVTSG VRAPIYQV+GH
Sbjct: 283 ILEWSLHNQGQILWSRDCSRFCNPESFKTRMHEIALDSNGKRLLVTSGLVRAPIYQVQGH 342

Query: 419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457
            S +RTLPH ++IT+VDWHPTLPM++TGSADHSV+V S+
Sbjct: 343 ESELRTLPHSSSITSVDWHPTLPMYITGSADHSVRVTSI 381

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293337159|ref|NP_001170112.1| uncharacterized protein LOC100384033 [Zea mays] gi|224033575|gb|ACN35863.1| unknown [Zea mays]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/329 (79%), Positives = 300/329 (91%)

Query: 129 EEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI 188
           EE+FPEVKVDF ETFLGH SPIS CRFS+SG+NIAS+S+DGTVRIWTYDSST +SRNATI
Sbjct: 46  EEEFPEVKVDFQETFLGHNSPISRCRFSASGSNIASSSIDGTVRIWTYDSSTASSRNATI 105

Query: 189 YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE 248
           YCG+E+ +L WEC+SDRLLLIGTA+GGIKAWN DAKRVVCDL+T+  FPS+LDLKCSPVE
Sbjct: 106 YCGSEVSALSWECRSDRLLLIGTANGGIKAWNADAKRVVCDLSTSRNFPSILDLKCSPVE 165

Query: 249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308
           P+FV AAASRR+GS+     GFA+LTVW+MKTWK +TVLPLGEDPPAITSLCFNHNGKIL
Sbjct: 166 PVFVFAAASRRHGSTTFERTGFANLTVWHMKTWKPLTVLPLGEDPPAITSLCFNHNGKIL 225

Query: 309 AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368
           AASA DGMIHMFDMSAGLQITGWPAHDS +SS+LFGP ETSIFSLGSDGKI+EWSL NQG
Sbjct: 226 AASATDGMIHMFDMSAGLQITGWPAHDSPVSSVLFGPAETSIFSLGSDGKILEWSLHNQG 285

Query: 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG 428
           Q+LW+R+CSRFC+PES K+  HE+ALD NG+RLLVTSG VRAPIYQV+GH S +RTLPH 
Sbjct: 286 QILWSRDCSRFCNPESFKTRMHEIALDSNGKRLLVTSGLVRAPIYQVQGHESELRTLPHS 345

Query: 429 AAITTVDWHPTLPMFLTGSADHSVQVMSL 457
           ++IT+VDWHPTLPM++TGSADHSV+V S+
Sbjct: 346 SSITSVDWHPTLPMYITGSADHSVRVTSI 374

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146592|ref|XP_003574046.1| PREDICTED: WD repeat-containing protein 91 homolog [Brachypodium distachyon]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/339 (76%), Positives = 301/339 (88%)

Query: 119 YTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178
           +++N +    EEDFPEVKVDF ETFLGH S IS CRFS+SG+NIAS+S DGTVRIWTYDS
Sbjct: 43  HSDNDQILVTEEDFPEVKVDFQETFLGHNSAISSCRFSASGSNIASSSTDGTVRIWTYDS 102

Query: 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS 238
           STP+S+NATIYCG E+ +L WEC+SDRLLLIGTA+GGIKAWN DAKRVVCDL+T+  FPS
Sbjct: 103 STPSSKNATIYCGAEVSTLSWECRSDRLLLIGTANGGIKAWNADAKRVVCDLSTSKDFPS 162

Query: 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298
           VLDLKCSPV+P+FVSAAASRR+GS+     GFASLTVW+MKTWK +TVLPLGEDPPAITS
Sbjct: 163 VLDLKCSPVDPVFVSAAASRRHGSTIFDRTGFASLTVWHMKTWKPLTVLPLGEDPPAITS 222

Query: 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK 358
           LCFNHNGKILAASA DGMIHMFDMSAGLQITGWPAHDS +SS+LFGP ETSIFSLGSDGK
Sbjct: 223 LCFNHNGKILAASATDGMIHMFDMSAGLQITGWPAHDSPVSSVLFGPAETSIFSLGSDGK 282

Query: 359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418
           I EWSL NQGQ+LW+R+CSRFC+P S  +  HE+ALD +G+RLLVTSG VRAPIYQV+GH
Sbjct: 283 IFEWSLHNQGQILWSRDCSRFCNPVSFNTRMHEVALDSDGKRLLVTSGLVRAPIYQVQGH 342

Query: 419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457
             G+RTLPH A+IT+VDWHPTLP+++TGSADHSV+V S+
Sbjct: 343 ERGLRTLPHSASITSVDWHPTLPIYVTGSADHSVRVTSI 381

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
DICTYBASE|DDB_G0268084	766	wdr91 "WD40 repeat-containing	0.692	0.413	0.334	9.6e-45
MGI|MGI:2141558	748	Wdr91 "WD repeat domain 91" [M	0.718	0.439	0.310	2.4e-36
MGI|MGI:1916794	328	Wdr5b "WD repeat domain 5B" [M	0.403	0.564	0.243	7.4e-12
UNIPROTKB|A8X8C6	368	tag-125 "WD repeat-containing	0.493	0.614	0.230	8.1e-12
UNIPROTKB|Q8N0X2	631	SPAG16 "Sperm-associated antig	0.277	0.201	0.302	1e-11
UNIPROTKB|Q0P593	415	WDR69 "Outer row dynein assemb	0.235	0.260	0.288	3.5e-11
RGD|1561436	415	LOC363267 "hypothetical protei	0.235	0.260	0.305	5.4e-11
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.449	0.649	0.254	2.1e-10
UNIPROTKB|G4MKJ2	594	MGG_04473 "WD repeat containin	0.159	0.122	0.381	4.3e-10
UNIPROTKB|G4MRA1	352	MGG_04693 "WD repeat-containin	0.451	0.588	0.242	1.3e-05

DICTYBASE|DDB_G0268084 wdr91 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 476 (172.6 bits), Expect = 9.6e-45, P = 9.6e-45
 Identities = 114/341 (33%), Positives = 182/341 (53%)

Query:   122 NGRDAQGEEDFPEV-KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST 180
             NG D  G E+   V  ++  E    H+S I+ C+F S+G+ IAS+S+DGTVR+W    S 
Sbjct:   440 NGSD--GIENGELVYNIESQEVCTSHSSAITRCKFLSNGSKIASSSIDGTVRLWNVGFS- 496

Query:   181 PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL 240
               SR  TIYC +E+ SLEWE +S +LLL GT D  IK WN    + + D+NT+  FP V 
Sbjct:   497 --SRQTTIYCLSEVASLEWENRS-KLLLCGTIDSKIKIWNSLTDKAIGDINTSIEFPRVE 553

Query:   241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300
             D+ C+P    F +++ +       +Y+W        N++T K  T   L      I S+ 
Sbjct:   554 DIACNPNGNSFATSSINNGRTDGVVYTW--------NLRTLK--TEEKLSSSGAVINSMS 603

Query:   301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII 360
             FN  G +L+   VDG I +FD+ +G  I GW AH + I S+ F  DE  ++SLG DGK+ 
Sbjct:   604 FNSTGTLLSTGCVDGTIRIFDIKSGSPIAGWQAHSNEILSVQFSSDENRLYSLGKDGKLY 663

Query:   361 EWSLQNQGQVLWTRNCSRFC-DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419
             +W++ + G+ +   +   F  DP  +     +++ + N    LV + +  A +Y +   +
Sbjct:   664 QWNIHSMGKPVKEYDYPGFLVDPHRTT----KISFNHNQSSFLVGTNNKFALLYNIDQSS 719

Query:   420 SGMRTLPHGAAITTVDWHPTLP--MFLTGSADHSVQVMSLS 458
               ++   H   + T DW+ +    + +TGS D ++++  LS
Sbjct:   720 PILQISGHTGPVVTCDWNSSSQSDVIITGSLDKTIRLTKLS 760

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:2141558 Wdr91 "WD repeat domain 91" [Mus musculus (taxid:10090)]

 Score = 399 (145.5 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 112/361 (31%), Positives = 170/361 (47%)

Query:   126 AQGEEDFPEVKVDFL--ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS 183
             A  E D PE     L  E +  H S I  CR   SG  +AS  VDG +++W+++      
Sbjct:   386 AGSEGDRPEQPFIVLSQEEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIMQTK 445

Query:   184 RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLK 243
               A+    + ++SLEW  K DRLLL+G+  G ++ ++ +AK+ +C++N  D  P +L L 
Sbjct:   446 --ASSISKSPLLSLEWATKRDRLLLLGSGVGTVRLYDTEAKKNLCEININDDMPRILSLA 503

Query:   244 CSPVEPIFV-SAAA---SRRYGSS--NIYSWGF----ASLTVWNMKTWKAMTVLPLGEDP 293
             CSP    FV SAAA   + +  SS  +I S G       L +W+ KT K      L  +P
Sbjct:   504 CSPNGASFVCSAAAPSLTSQTDSSAPDIGSKGMNQVPGKLLLWDTKTMKQQLQFSLDPEP 563

Query:   294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353
              AI    FNHNG +L   A DG+I +FDM        W AH   + S+ F  DE +++S+
Sbjct:   564 IAINCTAFNHNGNLLVTGAADGVIRLFDMQQHECAMSWKAHCGEVYSVEFSCDENAVYSI 623

Query:   354 GSDGKIIEWSLQNQGQVLWTRNC----------SRFCDPESSKSCRHEM-ALDVNGRRLL 402
             G D K I+W++   G  +   N           S +   +  +  R  + A D  G  +L
Sbjct:   624 GEDRKFIQWNIHKSGLKVSESNLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYML 683

Query:   403 VTSGSVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPM--FLTGSADHSVQVMS 456
              T  +    IY++      +        H A + TVDW   +     LT S D  +++ +
Sbjct:   684 -TCSATGGLIYKLGSEEKVLENCLSLGGHRAPVVTVDWSTAMDCGTCLTASMDGKIKLTT 742

Query:   457 L 457
             L
Sbjct:   743 L 743

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)]

 Score = 127 (49.8 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
 Identities = 49/201 (24%), Positives = 93/201 (46%)

Query:   262 SSNIYSWGF-ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
             S+ I S  F  S+ +W +KT K +  L    DP  I+++ FN NG ++ + + DG+  ++
Sbjct:   135 SNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDP--ISAVNFNCNGSLIVSGSYDGLCRIW 192

Query:   321 DMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
             D ++G  + T     +  +S + F P+   I +   D  +  W   ++G+ L T     +
Sbjct:   193 DAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDY-SRGRCLKT-----Y 246

Query:   380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY--QVRGHASGMRTLPHGAAITTVDWH 437
                ++ K C    +  V GR+ +V SGS    +Y   ++      R   H   + +   H
Sbjct:   247 TGHKNEKYCLFA-SFSVTGRKWVV-SGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACH 304

Query:   438 PTLPMFLTGSA--DHSVQVMS 456
             PT  +  + +   D +++V S
Sbjct:   305 PTKNIIASAALENDKTIKVWS 325

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A8X8C6 tag-125 "WD repeat-containing protein tag-125" [Caenorhabditis briggsae (taxid:6238)]

 Score = 141 (54.7 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
 Identities = 57/247 (23%), Positives = 111/247 (44%)

Query:   218 AWNVDAKRVVC--DLNTTDAF--PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF-AS 272
             AW+ D+K +V   D  T   +  P+V   K       +V         SS + S  F  S
Sbjct:   128 AWSADSKSIVTASDDKTLKIYEVPTVKMAKTLKGHTNYVFCCNFNPQ-SSLVVSGSFDES 186

Query:   273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI-TGW 331
             + +W+++T   +  LP   DP  ++++ FN +G ++ + + DG++ ++D + G  + T  
Sbjct:   187 VRIWDVRTGMCVKTLPAHSDP--VSAVSFNRDGSLITSGSYDGLVRIWDTANGQCVKTLV 244

Query:   332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391
                +  ++ + F P+   I S   D  +  W    +G+ L      ++   E++K C   
Sbjct:   245 DDENPPVAFVKFSPNGKYILSSNLDNTLKLWDF-GKGKTL-----KQYQGHENNKYCIFA 298

Query:   392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGM-RTLP-HGAAITTVDWHPTLPMFLTGSA- 448
                 V G + ++ SGS    IY        + ++L  H  A+   D HP   M  +G+  
Sbjct:   299 N-FSVTGGKWII-SGSEDCKIYVWNLQTKEVVQSLEGHTQAVIASDCHPMQNMIASGALE 356

Query:   449 -DHSVQV 454
              D+++++
Sbjct:   357 PDNTIRI 363

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8N0X2 SPAG16 "Sperm-associated antigen 16 protein" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
 Identities = 42/139 (30%), Positives = 68/139 (48%)

Query:   136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE-I 194
             K D + TF GH+  +  C + S GN +AS+S+D T +IW  D ++   R  T+Y  T+ +
Sbjct:   425 KGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIW--DVNSERCR-CTLYGHTDSV 481

Query:   195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254
              S+E+   S+ LL   +AD  +  W  DA+  +C+ +      S+ D    P   +  S 
Sbjct:   482 NSIEFFPFSNTLLT-SSADKTLSIW--DARTGICEQSLYGHMHSINDAIFDPRGHMIASC 538

Query:   255 AASRRYGSSNIYSWGFASL 273
              A    G + +  W F  L
Sbjct:   539 DAC---GVTKL--WDFRKL 552

GO:0005634 "nucleus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
 Identities = 34/118 (28%), Positives = 54/118 (45%)

Query:   262 SSNIYSWGFASLTVWNM----KTWKAMT---VLPL-GEDPPAITSLCFNHNGKILAASAV 313
             SS +++W  + +   +M    K W A+    V  L G D   + S CF++ GK++A ++ 
Sbjct:   265 SSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDS-CFDYTGKLIATASA 323

Query:   314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371
             DG   +F  +    +T    H+  IS I F P    + +  SD     W  Q  GQ L
Sbjct:   324 DGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQT-GQCL 380

GO:0005929 "cilium" evidence=IEA

RGD|1561436 LOC363267 "hypothetical protein LOC363267" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
 Identities = 36/118 (30%), Positives = 57/118 (48%)

Query:   262 SSNIYSWGFASLTVWNM-KT---WKAMT---VLPL-GEDPPAITSLCFNHNGKILAASAV 313
             SS ++SW  + +   +M KT   W A +   V  L G D   + S CF++ GK++A ++ 
Sbjct:   265 SSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDS-CFDYTGKLIATASA 323

Query:   314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371
             DG   +++ +    IT    H+  IS I F P    + +  SD     W +Q  GQ L
Sbjct:   324 DGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDVQT-GQCL 380

GO:0005929 "cilium" evidence=IEA

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 59/232 (25%), Positives = 107/232 (46%)

Query:   141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-STPASRNATIYCGTEIMSLEW 199
             +T   H   +S  +FSS G  +ASAS D T+R +T ++ + P +     + G E    + 
Sbjct:    18 QTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDV 77

Query:   200 ECKSD-RLLLIGTADGGIKAWNVDAKRVVCDL--NTTDAFPSVLDLKCSPVEPIFVSAAA 256
                SD R ++  + D  +K W+V+   ++  L  +T  AF       C    P       
Sbjct:    78 AFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAF-------CVNFNP------- 123

Query:   257 SRRYGSSNIYSWGF-ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG 315
                  S+ I S  F  ++ +W++ T K + VLP   DP  +T++ FN +G ++ +S+ DG
Sbjct:   124 ----QSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDP--VTAVDFNRDGSLIVSSSYDG 177

Query:   316 MIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366
             +  ++D   G  + T     +  +S + F P+   I     D  +  W++ +
Sbjct:   178 LCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISS 229

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

UNIPROTKB|G4MKJ2 MGG_04473 "WD repeat containing protein 5" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 114 (45.2 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 29/76 (38%), Positives = 39/76 (51%)

Query:   145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204
             GH+ PI+  R S +G  IASAS DGT RIW  D+ T A  +  +     +  L W   S 
Sbjct:   178 GHSQPIAQVRISPNGRWIASASADGTARIW--DAETGAHIDTLVGHMAGVSCLAWSPDSG 235

Query:   205 RLLLIGTADGGIKAWN 220
              L   G+ D  I+ W+
Sbjct:   236 TLAT-GSDDKAIRLWD 250

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|G4MRA1 MGG_04693 "WD repeat-containing protein 57" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 131 (51.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 54/223 (24%), Positives = 93/223 (41%)

Query:   140 LETFLGHTSPISCCRFSSSGNNIA-SASVDGTVRIWTYDSSTPASRNATIYCGTEI-MSL 197
             +  ++GH   I+    S  G  I  S S DGT+ IW      P  ++A  Y  ++  ++ 
Sbjct:   138 IRRYVGHEEVINSLDISKRGEEILFSGSDDGTIGIWD-----PRKKHAADYIESDFPVTA 192

Query:   198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
                 ++   +  G  D  IK W+V  K VV   N      ++  LK SP     +S A  
Sbjct:   193 VAISEAGNEIYSGGIDNDIKVWDVRKKAVV--YNMAGHRDTITTLKVSPDSQSLLSYAMD 250

Query:   258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317
                 + +I    FA  T  +++T+      P+G +   +    ++  GK +A  A DG +
Sbjct:   251 STARTWDIRP--FAP-TERHIRTFDGA---PMGIEKNLVRG-GWDKEGKRVAMGAADGTV 303

Query:   318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII 360
              ++    G      P H +A++ + F P    +   GS  K +
Sbjct:   304 VIWSNETGKLTYKLPGHKAAVNCVEFSPGTEPLILSGSSDKTL 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-32
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  123 bits (311), Expect = 4e-32
 Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 41/319 (12%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-IYCGTEIMSLEWE 200
           T  GHT  ++C  FS  G  +A+ S DGT+++W  ++               ++ +    
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA---- 59

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260
                 L  G++D  I+ W+++    V  L  T     V  +  SP   I  S++  +  
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTL--TGHTSYVSSVAFSPDGRILSSSSRDK-- 115

Query: 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
                      ++ VW+++T K +T L    D   + S+ F+ +G  +A+S+ DG I ++
Sbjct: 116 -----------TIKVWDVETGKCLTTLRGHTDW--VNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 321 DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380
           D+  G  +     H   ++S+ F PD   + S  SDG I  W L     +   R      
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222

Query: 381 DPESSKSCRHEMALDVNGRRLLVTS----GSVRAPIYQVRGHASGMRTLP-HGAAITTVD 435
                       ++  +    L+ S    G++R  ++ +R     ++TL  H  ++T++ 
Sbjct: 223 -----------NSVAFSPDGYLLASGSEDGTIR--VWDLR-TGECVQTLSGHTNSVTSLA 268

Query: 436 WHPTLPMFLTGSADHSVQV 454
           W P      +GSAD ++++
Sbjct: 269 WSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 20/224 (8%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           + T  GHTS +S   FS  G  ++S+S D T+++W  D  T             + S+ +
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW--DVETGKCLTTLRGHTDWVNSVAF 143

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
                  +   + DG IK W++   + V  L        V  +  SP     +S+++   
Sbjct: 144 -SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG--EVNSVAFSPDGEKLLSSSSDG- 199

Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
                       ++ +W++ T K +  L   E+   + S+ F+ +G +LA+ + DG I +
Sbjct: 200 ------------TIKLWDLSTGKCLGTLRGHENG--VNSVAFSPDGYLLASGSEDGTIRV 245

Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
           +D+  G  +     H ++++S+ + PD   + S  +DG I  W 
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.8 bits (221), Expect = 2e-19
 Identities = 72/325 (22%), Positives = 133/325 (40%), Gaps = 33/325 (10%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC 201
              GH   I+   FS  G  + S S DGT+++W  D+     ++      + +  L    
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 202 KSDRLLLIGT--ADGGIKAWNV-DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR 258
                +L+ +   DG +K W++    +++  L       SV  L  SP   +  S   S 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE--SVTSLAFSPDGKLLAS--GSS 175

Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMI 317
             G+  +          W+++T K ++ L    DP  ++SL F+ +G +L AS   DG I
Sbjct: 176 LDGTIKL----------WDLRTGKPLSTLAGHTDP--VSSLAFSPDGGLLIASGSSDGTI 223

Query: 318 HMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
            ++D+S G  +      H  ++ S  F PD + + S  SDG I  W L++   +L T   
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-- 280

Query: 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--LPHGAAITTV 434
                     S    +A   +G+ L   S      ++ +             H   ++++
Sbjct: 281 ------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Query: 435 DWHPTLPMFLTG-SADHSVQVMSLS 458
            + P   + ++G S D ++++  L 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 1e-17
 Identities = 65/323 (20%), Positives = 139/323 (43%), Gaps = 32/323 (9%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIYCGTEIMSLE 198
           + T  GH+  ++   FS  G  +AS S +DGT+++W   +  P S  A       + SL 
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP--VSSLA 205

Query: 199 WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR 258
           +      L+  G++DG I+ W++   +++   +T       +    SP   +  S ++  
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLL--RSTLSGHSDSVVSSFSPDGSLLASGSSDG 263

Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
                        ++ +W++++  ++     G     + S+ F+ +GK+LA+ + DG + 
Sbjct: 264 -------------TIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSDGTVR 309

Query: 319 MFDMSAGLQI--TGWPAHDSAISSILFGPDETSIFSLGSDGKIIE-WSLQNQGQVLWTRN 375
           ++D+  G  +       H+  +SS+ F PD + + S GSD   I  W L+    +     
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK---- 365

Query: 376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD 435
                      S    ++   +GR +   S      ++ +   +       H + +T++D
Sbjct: 366 ------TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLD 419

Query: 436 WHPTLPMFLTGSADHSVQVMSLS 458
           + P      +GS+D+++++  L 
Sbjct: 420 FSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.1 bits (183), Expect = 1e-14
 Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 18/229 (7%)

Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE 198
              T  GH+  +    FS  G+ +AS S DGT+R+W   SS+   R       + ++S+ 
Sbjct: 234 LRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRT-LSGHSSSVLSVA 291

Query: 199 WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR 258
           +     +LL  G++DG ++ W+++  +++  L        V  L  SP   + VS  +  
Sbjct: 292 F-SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350

Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
                        ++ +W+++T K +  L    +   + S+ F+ +G+++++ + DG + 
Sbjct: 351 G------------TIRLWDLRTGKPLKTLEGHSN---VLSVSFSPDGRVVSSGSTDGTVR 395

Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367
           ++D+S G  +     H S ++S+ F PD  S+ S  SD  I  W L+  
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.0 bits (180), Expect = 3e-14
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 20/230 (8%)

Query: 139 FLETFLGHTSPISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSL 197
            L T  GHT P+S   FS  G   IAS S DGT+R+W  D ST     +T+   ++ +  
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW--DLSTGKLLRSTLSGHSDSVVS 247

Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
            +      LL  G++DG I+ W++ +   +    +  +   VL +  SP   +  S ++ 
Sbjct: 248 SF-SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSD 305

Query: 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGM 316
                         ++ +W+++T K ++ L L      ++SL F+ +G +L +    DG 
Sbjct: 306 G-------------TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352

Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366
           I ++D+  G  +     H + + S+ F PD   + S  +DG +  W L  
Sbjct: 353 IRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.9 bits (159), Expect = 1e-11
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 30/220 (13%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           L T  GH+S +    FS  G  +AS S DGTVR+W  ++    S          + SL +
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
                 L+  G+ DG I+ W++   + +    T +   +VL +  SP   +  S +    
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPL---KTLEGHSNVLSVSFSPDGRVVSSGSTDG- 392

Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
                       ++ +W++ T   +  L        +TSL F+ +GK LA+ + D  I +
Sbjct: 393 ------------TVRLWDLSTGSLLRNLDGHTSR--VTSLDFSPDGKSLASGSSDNTIRL 438

Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKI 359
           +D+             +++ S+ F PD   + S  SD  +
Sbjct: 439 WDLK------------TSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
           L T  GHT P++   FS  GN +AS S DGTVR+W
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
           L+T  GHT P++   FS  G  +AS S DGT+++W
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 427 HGAAITTVDWHPTLPMFLTGSADHSVQV 454
           H   +T+V + P   +  +GS D +V+V
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 427 HGAAITTVDWHPTLPMFLTGSADHSVQV 454
           H   +T+V + P      +GS D ++++
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKL 38

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG2055	514	consensus WD40 repeat protein [General function pr	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.98
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG2048	691	consensus WD40 repeat protein [General function pr	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
PTZ00420	568	coronin; Provisional	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
PRK11028	330	6-phosphogluconolactonase; Provisional	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.88
KOG1963	792	consensus WD40 repeat protein [General function pr	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG1334	559	consensus WD40 repeat protein [General function pr	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG0649	325	consensus WD40 repeat protein [General function pr	99.84
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG2139	445	consensus WD40 repeat protein [General function pr	99.83
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG1334	559	consensus WD40 repeat protein [General function pr	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.75
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.74
KOG2321	703	consensus WD40 repeat protein [General function pr	99.73
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.72
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.69
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
KOG2315	566	consensus Predicted translation initiation factor	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.61
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.61
KOG2314	698	consensus Translation initiation factor 3, subunit	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG2315	566	consensus Predicted translation initiation factor	99.59
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
KOG2314	698	consensus Translation initiation factor 3, subunit	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.53
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.52
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.52
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.5
PRK01029	428	tolB translocation protein TolB; Provisional	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.5
PRK01029	428	tolB translocation protein TolB; Provisional	99.5
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.49
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.47
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.46
COG4946	668	Uncharacterized protein related to the periplasmic	99.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.44
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.43
COG4946	668	Uncharacterized protein related to the periplasmic	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.4
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.3
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.29
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.22
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.21
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.17
PRK04043	419	tolB translocation protein TolB; Provisional	99.16
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.1
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.09
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.08
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.98
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.86
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.82
PRK02888	635	nitrous-oxide reductase; Validated	98.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.71
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.7
KOG2695	425	consensus WD40 repeat protein [General function pr	98.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.67
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.61
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.6
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.6
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.6
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.59
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.58
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.57
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.57
PRK02888	635	nitrous-oxide reductase; Validated	98.57
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.52
KOG3621	726	consensus WD40 repeat-containing protein [General	98.52
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.52
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.47
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.46
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.41
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.41
COG3391	381	Uncharacterized conserved protein [Function unknow	98.39
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.36
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.3
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.29
COG3391	381	Uncharacterized conserved protein [Function unknow	98.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.28
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.13
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.11
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.11
KOG3621	726	consensus WD40 repeat-containing protein [General	98.07
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.07
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.04
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.02
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.0
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.96
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.94
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.91
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.89
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.88
PRK13616	591	lipoprotein LpqB; Provisional	97.88
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
PRK13616	591	lipoprotein LpqB; Provisional	97.76
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.75
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.74
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.7
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.68
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.66
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.65
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.62
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.59
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.57
PHA02713	557	hypothetical protein; Provisional	97.57
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.54
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.54
KOG2395	644	consensus Protein involved in vacuole import and d	97.53
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.5
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.47
KOG2444	238	consensus WD40 repeat protein [General function pr	97.46
KOG2395	644	consensus Protein involved in vacuole import and d	97.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.39
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.36
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.29
PHA02713	557	hypothetical protein; Provisional	97.11
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.1
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.09
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.97
COG5276	370	Uncharacterized conserved protein [Function unknow	96.97
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.96
KOG2444	238	consensus WD40 repeat protein [General function pr	96.93
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.92
PHA03098	534	kelch-like protein; Provisional	96.84
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.74
PHA03098	534	kelch-like protein; Provisional	96.73
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.63
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.62
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.59
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.43
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.38
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.29
PHA02790	480	Kelch-like protein; Provisional	96.22
PHA02790	480	Kelch-like protein; Provisional	96.2
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.18
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.16
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.14
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.1
PRK13684	334	Ycf48-like protein; Provisional	95.97
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.82
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.8
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.79
KOG2247	615	consensus WD40 repeat-containing protein [General	95.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.77
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.72
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.67
COG5167	776	VID27 Protein involved in vacuole import and degra	95.52
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.15
COG5276	370	Uncharacterized conserved protein [Function unknow	95.01
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.83
KOG2247	615	consensus WD40 repeat-containing protein [General	94.83
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.81
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.79
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.65
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.54
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.46
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.38
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.38
COG5167	776	VID27 Protein involved in vacuole import and degra	94.12
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.12
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.95
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.92
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.66
PRK10115	686	protease 2; Provisional	93.65
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.62
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.51
COG4590	733	ABC-type uncharacterized transport system, permeas	93.43
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.25
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.06
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.96
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.82
PRK10115	686	protease 2; Provisional	92.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.63
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.54
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.51
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.43
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.16
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.12
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.88
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.7
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.7
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.61
PLN02193	470	nitrile-specifier protein	91.49
COG4590	733	ABC-type uncharacterized transport system, permeas	91.46
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.31
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.14
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.94
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.86
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.83
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.79
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.71
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.53
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	89.63
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.52
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.1
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.63
PRK13615	557	lipoprotein LpqB; Provisional	88.63
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.24
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.04
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	88.01
PLN02193	470	nitrile-specifier protein	87.6
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.54
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.26
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.19
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	86.89
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	86.72
PRK05560	805	DNA gyrase subunit A; Validated	86.63
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.49
PLN02153	341	epithiospecifier protein	86.07
PLN02153	341	epithiospecifier protein	85.54
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.53
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	85.52
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	84.58
COG4880	603	Secreted protein containing C-terminal beta-propel	83.99
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.93

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-56  Score=362.89  Aligned_cols=330  Identities=22%  Similarity=0.325  Sum_probs=292.7

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      ..+.||..+|-|++| +|+|..||||+.|.++++||..++.                                       
T Consensus       109 sS~~GH~e~Vl~~~f-sp~g~~l~tGsGD~TvR~WD~~TeT---------------------------------------  148 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQF-SPTGSRLVTGSGDTTVRLWDLDTET---------------------------------------  148 (480)
T ss_pred             cccCCCCCcEEEEEe-cCCCceEEecCCCceEEeeccCCCC---------------------------------------
Confidence            357799999999999 9999999999999999999987661                                       


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                                                               +..+.++|...|.|++|+|||+.||+|+.||+|++||.+
T Consensus       149 -----------------------------------------p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  149 -----------------------------------------PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             -----------------------------------------cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence                                                     445678999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCceEEEEEec----CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699          178 SSTPASRNATIYCGTEIMSLEWEC----KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS  253 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  253 (458)
                      +++.... ....|...|++++|.|    +..++|++++.||.++|||+..++++..+..|.  .+|+++.|-.++ ++++
T Consensus       188 tg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VTCvrwGG~g-liyS  263 (480)
T KOG0271|consen  188 TGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVTCVRWGGEG-LIYS  263 (480)
T ss_pred             CCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceEEEEEcCCc-eEEe
Confidence            9887643 4556888999999986    456799999999999999999999998888776  789999997554 7888


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc-----------cCCC----------------
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-----------HNGK----------------  306 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~----------------  306 (458)
                      ++.|+             +|++|+...++....++  +|...|+.++.+           |.++                
T Consensus       264 gS~Dr-------------tIkvw~a~dG~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY  328 (480)
T KOG0271|consen  264 GSQDR-------------TIKVWRALDGKLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY  328 (480)
T ss_pred             cCCCc-------------eEEEEEccchhHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence            88885             99999999998888875  676789988877           2233                


Q ss_pred             ---------EEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          307 ---------ILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       307 ---------~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                               .|++|+.|.++.+|+... .+++.++.+|..-|+.+.||||++++|++|.|..|++||.++++.+.     
T Consensus       329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la-----  403 (480)
T KOG0271|consen  329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA-----  403 (480)
T ss_pred             HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh-----
Confidence                     499999999999999755 56888999999999999999999999999999999999999875432     


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                          ...+|-..|+.++|+.|.++|++++.|.++++|++++.+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       404 ----sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  404 ----SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ----hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                3446888899999999999999999999999999999988888999999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.3e-49  Score=333.84  Aligned_cols=410  Identities=18%  Similarity=0.260  Sum_probs=323.3

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccc---------ccccccceeeeeccCCceeeeeCCccceeE
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSS---------EACATTATHMGSAEMGQTWASSRPALSRFA   86 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (458)
                      ...++.+|...++-..| ||.|.|+|||...|+++||+...         +.+.+++.+++|..+++|++..+.++++|.
T Consensus        51 ~~~iYtEH~~~vtVAky-SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKY-SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             ceeeeccccceeEEEEe-CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence            35678899999999999 99999999999999999998754         334489999999999999999999999987


Q ss_pred             eeccCCCcccccccccccCCcccceeeeccCCCCcCCC-cceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCC
Q 012699           87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGR-DAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSG  159 (458)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~  159 (458)
                      .+..+|..-.+-++       ...-+..+...|.|... .+++++++..+.+      ++..+++.|..-|+|+.|+|||
T Consensus       130 ~~F~~DSG~SvGei-------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG  202 (603)
T KOG0318|consen  130 HVFLWDSGNSVGEI-------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG  202 (603)
T ss_pred             EEEEecCCCcccee-------eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC
Confidence            76655433332222       12222333334444333 3455555555544      5777889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccc-cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-C
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNA-TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-P  237 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~  237 (458)
                      +++||++.||++.+||-.+++...... ...|.+.|.+++|+ |++..+++++.|.++++||+.+++++.++...... .
T Consensus       203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence            999999999999999998888765333 44678899999999 78889999999999999999999999888766431 1


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI  317 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  317 (458)
                      ....+.|.  ...|++.+.+             |.|.+++.....+...+  .+|...|+++..+|++++|++|+.||.|
T Consensus       282 qqvG~lWq--kd~lItVSl~-------------G~in~ln~~d~~~~~~i--~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  282 QQVGCLWQ--KDHLITVSLS-------------GTINYLNPSDPSVLKVI--SGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             eEEEEEEe--CCeEEEEEcC-------------cEEEEecccCCChhhee--cccccceeEEEEcCCCCEEEeeccCceE
Confidence            22334444  5667777766             69999999998866666  4898999999999999999999999999


Q ss_pred             EEEeCCCCcee-----------e--------------------ee-----------------------------------
Q 012699          318 HMFDMSAGLQI-----------T--------------------GW-----------------------------------  331 (458)
Q Consensus       318 ~v~d~~~~~~~-----------~--------------------~~-----------------------------------  331 (458)
                      .-||..++..-           .                    .+                                   
T Consensus       345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence            99998643210           0                    00                                   


Q ss_pred             -------eCC--------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          332 -------PAH--------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       332 -------~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                             +.+        .-...+++++|+++.++.|+.|+.+++|.+......       .......|...++.+++||
T Consensus       425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-------ee~~~~~h~a~iT~vaySp  497 (603)
T KOG0318|consen  425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-------EEAKLLEHRAAITDVAYSP  497 (603)
T ss_pred             cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-------ceeeeecccCCceEEEECC
Confidence                   000        113467889999999999999999999999864321       2223346888999999999


Q ss_pred             CCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          397 NGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       397 ~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |+.+||++...+.+.+||+.+.+....... |.+.|++++|+|+..++|||+-|-+|.||+++
T Consensus       498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            999999999999999999998876443334 99999999999999999999999999999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-49  Score=325.73  Aligned_cols=291  Identities=17%  Similarity=0.316  Sum_probs=257.4

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      ++-..+.||.++|.|++|+|+|+.|++|+.|.++|+||+.+..+..  ....|.+-|.+++|+ |++..|++|+.||+|+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--t~KgH~~WVlcvaws-PDgk~iASG~~dg~I~  182 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--TCKGHKNWVLCVAWS-PDGKKIASGSKDGSIR  182 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--eecCCccEEEEEEEC-CCcchhhccccCCeEE
Confidence            3666788999999999999999999999999999999999887754  456788999999999 8899999999999999


Q ss_pred             EEEcCCCceee-eccCCCCCCceeeeeecC-----CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          218 AWNVDAKRVVC-DLNTTDAFPSVLDLKCSP-----VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       218 ~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      +||..+|+++. .+..|.  ..|.+++|.|     ....+++++.|             |.++|||+..+.++..+  .+
T Consensus       183 lwdpktg~~~g~~l~gH~--K~It~Lawep~hl~p~~r~las~skD-------------g~vrIWd~~~~~~~~~l--sg  245 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHK--KWITALAWEPLHLVPPCRRLASSSKD-------------GSVRIWDTKLGTCVRTL--SG  245 (480)
T ss_pred             EecCCCCCcccccccCcc--cceeEEeecccccCCCccceecccCC-------------CCEEEEEccCceEEEEe--cc
Confidence            99999988763 445444  7899999976     45678888888             69999999988887776  48


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEc-----------CCC-------------
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFG-----------PDE-------------  347 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~-------------  347 (458)
                      |..+|+|+.|--+| +|++|+.|++|++|+...|.+...+++|...|+.++.+           |.+             
T Consensus       246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A  324 (480)
T KOG0271|consen  246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA  324 (480)
T ss_pred             CccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence            99999999998665 89999999999999999999999999999999999877           223             


Q ss_pred             ------------CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          348 ------------TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       348 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                                  ..|++|++|.++.+|+-...++++        ....+|..-|+.+.||||++++|+++-|..|++|+.
T Consensus       325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi--------~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g  396 (480)
T KOG0271|consen  325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI--------TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG  396 (480)
T ss_pred             HHHHHHhhccCcceeEEecCCceEEEecccccccch--------hhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence                        359999999999999987654432        233478888999999999999999999999999999


Q ss_pred             cCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          416 RGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       416 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .+++-+..+.+|-++|..++|+.|.++|++|+.|.++++|++
T Consensus       397 ~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  397 RTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             CCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence            999999999999999999999999999999999999999997

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.4e-49  Score=327.42  Aligned_cols=285  Identities=20%  Similarity=0.322  Sum_probs=261.7

Q ss_pred             ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcC
Q 012699          144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~  222 (458)
                      -|-+.+|..+.|++|++.|+||+.+|.+++|+..+....  .....|...+.++.|+|. ++..+++++.||++++|++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            367889999999999999999999999999999887543  356678899999999987 47799999999999999999


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      +..++..+..|.  ..|..++|+|+|+++.+++.|.             +-++||++++......  ++|...|.+++|.
T Consensus       250 ~e~~l~~l~gH~--~RVs~VafHPsG~~L~TasfD~-------------tWRlWD~~tk~ElL~Q--EGHs~~v~~iaf~  312 (459)
T KOG0272|consen  250 QETPLQDLEGHL--ARVSRVAFHPSGKFLGTASFDS-------------TWRLWDLETKSELLLQ--EGHSKGVFSIAFQ  312 (459)
T ss_pred             CCcchhhhhcch--hhheeeeecCCCceeeeccccc-------------chhhcccccchhhHhh--cccccccceeEec
Confidence            999998888877  6899999999999999999996             9999999997766544  5899999999999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  382 (458)
                      |||.++++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..|||||.|++++|||++.....         ...
T Consensus       313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l---------y~i  383 (459)
T KOG0272|consen  313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL---------YTI  383 (459)
T ss_pred             CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc---------eec
Confidence            99999999999999999999999999999999999999999999999999999999999999976542         233


Q ss_pred             CCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          383 ESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       383 ~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ..|..-|+.+.|+| .|.+|++++.|++++||...+..++..+.||.+.|.++..+|++.+++|++.|.++++|.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            46888899999999 789999999999999999999999999999999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.1e-47  Score=300.05  Aligned_cols=296  Identities=16%  Similarity=0.250  Sum_probs=259.5

Q ss_pred             CeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      +.++++..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+.....  ........|..++|+ |+++++++|+-
T Consensus        41 ~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~s-PSg~~VAcGGL  117 (343)
T KOG0286|consen   41 GRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYS-PSGNFVACGGL  117 (343)
T ss_pred             eeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEEC-CCCCeEEecCc
Confidence            445566779999999999999999999999999999999999987766543  233345679999999 78999999999


Q ss_pred             CCcEEEEEcCCC------ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          213 DGGIKAWNVDAK------RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       213 dg~i~~wd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      |+...||++.+.      ...+.+..|  .+.+.++.|.+ ...+++++.|.             +..+||+++++....
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gH--tgylScC~f~d-D~~ilT~SGD~-------------TCalWDie~g~~~~~  181 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGH--TGYLSCCRFLD-DNHILTGSGDM-------------TCALWDIETGQQTQV  181 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCc--cceeEEEEEcC-CCceEecCCCc-------------eEEEEEcccceEEEE
Confidence            999999999865      223334444  47788999988 45666777774             999999999999988


Q ss_pred             eecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          287 LPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      |.  +|.+.|.+++++| +++.+++|+-|+..++||++.+.++++|.+|+..|+++.|.|+|.-|++|++|++.++||++
T Consensus       182 f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  182 FH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             ec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            75  8999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      ...++...       .......+|++++||..|++|++|..|..+.+||.-.++....+.+|...|+++..+|||..++|
T Consensus       260 aD~~~a~y-------s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~T  332 (343)
T KOG0286|consen  260 ADQELAVY-------SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVAT  332 (343)
T ss_pred             CCcEEeee-------ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEe
Confidence            87665432       23455677999999999999999999999999999988888888899999999999999999999


Q ss_pred             ecCCCcEEEEe
Q 012699          446 GSADHSVQVMS  456 (458)
Q Consensus       446 ~~~dg~v~iw~  456 (458)
                      |+.|.++|||.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.7e-44  Score=315.42  Aligned_cols=412  Identities=15%  Similarity=0.214  Sum_probs=335.9

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      +.+++.||-..|+++.| +.|.++|++|+.|-+.++|..+..+-.  ..+.-.......++..+..+..-+.+-+.||.+
T Consensus       137 l~r~~~g~fddi~si~W-s~DSr~l~~gsrD~s~rl~~v~~~k~~--~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l  213 (893)
T KOG0291|consen  137 LHRTYLGHFDDITSIDW-SDDSRLLVTGSRDLSARLFGVDGNKNL--FTYALNGHKDYVVACFFGANSLDLYTVSKDGAL  213 (893)
T ss_pred             EeeeecCCccceeEEEe-ccCCceEEeccccceEEEEEecccccc--ceEeccCCCcceEEEEeccCcceEEEEecCceE
Confidence            35688899999999999 999999999999999999998766542  111111222334556677778889999999999


Q ss_pred             cccccccccCCcccc---------------------------e---------eeeccCCCCcCCCcceeccCCCeeee--
Q 012699           96 SPSKLEFEDVGAGDI---------------------------I---------QMFNDGLYTENGRDAQGEEDFPEVKV--  137 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~---------------------------~---------~~~~~~~~~~~g~~~~~~~~~~~~~~--  137 (458)
                      .+|....++....+.                           .         ......+|++.-+.++++...+...+  
T Consensus       214 ~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lye  293 (893)
T KOG0291|consen  214 FVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYE  293 (893)
T ss_pred             EEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEe
Confidence            999987332111110                           0         00112347777777887777776654  


Q ss_pred             ----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCC-CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          138 ----DFLETFLGHTSPISCCRFSSSGNNIASASVD-GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       138 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                          ..++.+.--..+|..++|+..|..||.|+.. |.+-||++.+...+.  ....|...+.+++++ ++++++++|+.
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--KQQgH~~~i~~l~YS-pDgq~iaTG~e  370 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--KQQGHSDRITSLAYS-PDGQLIATGAE  370 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--eccccccceeeEEEC-CCCcEEEeccC
Confidence                5677777778899999999999999998754 899999998876643  445677899999999 89999999999


Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      ||.|++||..++-+..++..|.  +.|+.+.|+..++.+++.+-|             |+|+.||+...+..++++.+ .
T Consensus       371 DgKVKvWn~~SgfC~vTFteHt--s~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~P-~  434 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVTFTEHT--SGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTSP-E  434 (893)
T ss_pred             CCcEEEEeccCceEEEEeccCC--CceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecCC-C
Confidence            9999999999999999998776  789999999999999999999             69999999999999999754 4


Q ss_pred             CCcEEEEEEccCCCEEEEEecCC-eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          293 PPAITSLCFNHNGKILAASAVDG-MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      +....|++..|.|.++.+|+.|. .|++|++.+|+.+-.+.+|++||.+++|+|++..|+++|.|.+|++||+-......
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence            45688999999999999998886 69999999999999999999999999999999999999999999999998653322


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--------------------CCCCcE
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--------------------PHGAAI  431 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------------~h~~~v  431 (458)
                      ..         ......+..++|+|+|+.|++++-||.|.+||.+.......+.                    .-....
T Consensus       515 Et---------l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F  585 (893)
T KOG0291|consen  515 ET---------LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF  585 (893)
T ss_pred             ee---------EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence            22         2355668999999999999999999999999997654432111                    123578


Q ss_pred             EEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          432 TTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +.+++++||..+++||....|+||++.
T Consensus       586 tti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  586 TTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             EEEEEcCCCCEEEecCCcccEEEEECc
Confidence            999999999999999999999999973

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-46  Score=312.12  Aligned_cols=279  Identities=18%  Similarity=0.282  Sum_probs=252.4

Q ss_pred             ceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEE
Q 012699           73 QTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISC  152 (458)
Q Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  152 (458)
                      ......++.++..+++||++|.+++|+.....                                  .+.+|+||++.|.+
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~----------------------------------~~~~l~gH~~~v~~  222 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCN----------------------------------LLQTLRGHTSRVGA  222 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCcc----------------------------------eeEEEeccccceee
Confidence            34456778899999999999999999986654                                  77889999999999


Q ss_pred             EEeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          153 CRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       153 ~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      +.|+|.  +..||||+.||++++|++++..++.  ....|...|..++|+ |+|++|++++.|.+-++||++++..+...
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--~l~gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~Q  299 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--DLEGHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQ  299 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccCCCcchh--hhhcchhhheeeeec-CCCceeeecccccchhhcccccchhhHhh
Confidence            999996  5689999999999999998876654  455677899999999 89999999999999999999999988776


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (458)
                      ..|.  ..|.+++|.|+|.++++|+.|.             .-+|||+++++++..+.  +|..+|..++|+|+|-.||+
T Consensus       300 EGHs--~~v~~iaf~~DGSL~~tGGlD~-------------~~RvWDlRtgr~im~L~--gH~k~I~~V~fsPNGy~lAT  362 (459)
T KOG0272|consen  300 EGHS--KGVFSIAFQPDGSLAATGGLDS-------------LGRVWDLRTGRCIMFLA--GHIKEILSVAFSPNGYHLAT  362 (459)
T ss_pred             cccc--cccceeEecCCCceeeccCccc-------------hhheeecccCcEEEEec--ccccceeeEeECCCceEEee
Confidence            6665  7899999999999999999995             88999999999988775  79999999999999999999


Q ss_pred             EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce
Q 012699          311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR  389 (458)
Q Consensus       311 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  389 (458)
                      |+.|++++|||++..+++.++++|.+-|..+.|+| .|.+|+|++.|+++++|.-.+..         ......+|...|
T Consensus       363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---------~~ksLaGHe~kV  433 (459)
T KOG0272|consen  363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---------PLKSLAGHEGKV  433 (459)
T ss_pred             cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---------cchhhcCCccce
Confidence            99999999999999999999999999999999999 78899999999999999988654         334456899999


Q ss_pred             eEEEEccCCCEEEEEeCCccEEEEE
Q 012699          390 HEMALDVNGRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       390 ~~~~~s~~g~~l~~~~~~~~i~i~~  414 (458)
                      .++.++||++++++++.|.++++|.
T Consensus       434 ~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  434 ISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-44  Score=284.21  Aligned_cols=294  Identities=18%  Similarity=0.283  Sum_probs=263.2

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccce-eeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTAT-HMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +.|+||.+.|.++.+ ++|.+.++|+|.||.+.|||.-+....+.|+ ...|+     ++.++++.+.++|.|+-|....
T Consensus        49 r~LkGH~~Ki~~~~w-s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WV-----MtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDW-STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWV-----MTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             EEecccccceeeeEe-cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeE-----EEEEECCCCCeEEecCcCceeE
Confidence            689999999999999 9999999999999999999998876665554 33444     4588899999999999999999


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                      |+++...+.                +          +.  ....+.+.+|++.+.|+.|-+|+ .|+|++.|.++.+||+
T Consensus       123 iy~ls~~d~----------------~----------g~--~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen  123 IYPLSTRDA----------------E----------GN--VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI  173 (343)
T ss_pred             EEecccccc----------------c----------cc--ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc
Confidence            999986441                1          11  12566789999999999999865 6889999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      ++++...  ....|.+.|.++++.|.+++.+++|+-|+..++||++.+.+.+++..++  ..|.++.|.|+|.-+++++.
T Consensus       174 e~g~~~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe--sDINsv~ffP~G~afatGSD  249 (343)
T KOG0286|consen  174 ETGQQTQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE--SDINSVRFFPSGDAFATGSD  249 (343)
T ss_pred             ccceEEE--EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc--cccceEEEccCCCeeeecCC
Confidence            9998754  4557888999999997799999999999999999999999999999887  78999999999999999999


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                      |             ++.++||++..+.+..+.......+|++++||..|++|++|..|..+.+||.-.++.+..+.+|++
T Consensus       250 D-------------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN  316 (343)
T KOG0286|consen  250 D-------------ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN  316 (343)
T ss_pred             C-------------ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence            9             599999999999999988777778899999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          337 AISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      .|.++..+|||..+++||.|.+++||.
T Consensus       317 RvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  317 RVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-42  Score=308.93  Aligned_cols=397  Identities=15%  Similarity=0.216  Sum_probs=319.0

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +...|++++. ||+|.+|++....|...+-+....-..      ..+..+.|+|+++.+|++..            +-+.
T Consensus        54 ~~~NI~~ial-Sp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~g------------n~lq  120 (893)
T KOG0291|consen   54 TRYNITRIAL-SPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCG------------NLLQ  120 (893)
T ss_pred             cCCceEEEEe-CCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEec------------ceeE
Confidence            5667999999 999999999988888877766654433      45566777777666665532            2344


Q ss_pred             ccccccccC----------CcccceeeeccCCCCcCCCcceeccCCCeeeeee--------eeeeccCCCCeEEEEeCCC
Q 012699           97 PSKLEFEDV----------GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDF--------LETFLGHTSPISCCRFSSS  158 (458)
Q Consensus        97 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~  158 (458)
                      +|.......          .............|+.|.+.+++++.+...++..        ...+.||+++|-.+-|..+
T Consensus       121 iw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~  200 (893)
T KOG0291|consen  121 IWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN  200 (893)
T ss_pred             EEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC
Confidence            554332111          0011112224556899999999999988888732        4567799999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCCC-----------------------C-CCc-------ccc-ccCCCceEEEEEecCCCeE
Q 012699          159 GNNIASASVDGTVRIWTYDSST-----------------------P-ASR-------NAT-IYCGTEIMSLEWECKSDRL  206 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~-----------------------~-~~~-------~~~-~~~~~~v~~~~~~~~~~~~  206 (458)
                      ...++|.+.||.+.+|......                       . ..+       ... ......+++.+|+ +..+.
T Consensus       201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~  279 (893)
T KOG0291|consen  201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNL  279 (893)
T ss_pred             cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc-CCceE
Confidence            9999999999999999876211                       0 000       000 1112678999999 78899


Q ss_pred             EEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       207 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      |++|-..|...+|.+..-.+++.+...+  .+|..++|+..|.+++.++..-            |.+-+|+.++..-+. 
T Consensus       280 lvvgFssG~f~LyelP~f~lih~LSis~--~~I~t~~~N~tGDWiA~g~~kl------------gQLlVweWqsEsYVl-  344 (893)
T KOG0291|consen  280 LVVGFSSGEFGLYELPDFNLIHSLSISD--QKILTVSFNSTGDWIAFGCSKL------------GQLLVWEWQSESYVL-  344 (893)
T ss_pred             EEEEecCCeeEEEecCCceEEEEeeccc--ceeeEEEecccCCEEEEcCCcc------------ceEEEEEeeccceee-
Confidence            9999999999999999999999988876  5799999999999999998764            799999998755444 


Q ss_pred             eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                       +..+|...+++++++|||+++++|+.||.|+|||..++-++.++..|+..|+.+.|+..|+.+++.+.||+|+.||+..
T Consensus       345 -KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  345 -KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             -eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence             4468889999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      .......      ..  +......+++..|.|..+++|+.|. .|++|++++++.+-.+.||+++|.+++|+|++..||+
T Consensus       424 YrNfRTf------t~--P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  424 YRNFRTF------TS--PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS  495 (893)
T ss_pred             cceeeee------cC--CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence            6443321      11  2234467899999999999999874 7999999999988888899999999999999999999


Q ss_pred             ecCCCcEEEEeC
Q 012699          446 GSADHSVQVMSL  457 (458)
Q Consensus       446 ~~~dg~v~iw~l  457 (458)
                      +|+|.+||+|++
T Consensus       496 ~SWDkTVRiW~i  507 (893)
T KOG0291|consen  496 GSWDKTVRIWDI  507 (893)
T ss_pred             ccccceEEEEEe
Confidence            999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-42  Score=295.53  Aligned_cols=402  Identities=15%  Similarity=0.187  Sum_probs=304.8

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      ..++.|...|+|++| +|||..++|.+.|+++.++|-.++...+.+.. .-...+..+++.-++++..+++.+.|.++++
T Consensus       184 ~s~r~HskFV~~VRy-sPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRY-SPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKTIKI  261 (603)
T ss_pred             ecccccccceeeEEE-CCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEecCCceEEE
Confidence            467789999999999 99999999999999999999999988766654 2333456666777777889999999999999


Q ss_pred             cccccccCCcccceeeecc------CCCCcCCCcceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEEEEE
Q 012699           98 SKLEFEDVGAGDIIQMFND------GLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNIASA  165 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~  165 (458)
                      |++.....  .........      ...-+ ...+.+.+..+.+.+      ..++.+.||...|+++..+|++++|++|
T Consensus       262 WdVs~~sl--v~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  262 WDVSTNSL--VSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG  338 (603)
T ss_pred             EEeeccce--EEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence            99976531  111111100      01111 334444445555544      4677889999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec--cCCCCCCceeeee
Q 012699          166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL--NTTDAFPSVLDLK  243 (458)
Q Consensus       166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~v~~~~  243 (458)
                      +.||.|.-|+..++..- +.....|...|.+++-+  ....+++.+.|.++++.++..+......  +..   .....++
T Consensus       339 syDG~I~~W~~~~g~~~-~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg---~QP~~la  412 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSD-RLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG---SQPKGLA  412 (603)
T ss_pred             ccCceEEEEecCCcccc-ccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecC---CCceeEE
Confidence            99999999999887654 22334577889999876  3355888889999999998755443322  222   2344888


Q ss_pred             ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC
Q 012699          244 CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS  323 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~  323 (458)
                      ..+++..++.+...              .|.+..-.+  ....+..   .....+++++|++..+++|+.||.|++|.+.
T Consensus       413 v~~d~~~avv~~~~--------------~iv~l~~~~--~~~~~~~---~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~  473 (603)
T KOG0318|consen  413 VLSDGGTAVVACIS--------------DIVLLQDQT--KVSSIPI---GYESSAVAVSPDGSEVAVGGQDGKVHVYSLS  473 (603)
T ss_pred             EcCCCCEEEEEecC--------------cEEEEecCC--cceeecc---ccccceEEEcCCCCEEEEecccceEEEEEec
Confidence            88888776666554              555554222  2222221   1336889999999999999999999999998


Q ss_pred             CCc--eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699          324 AGL--QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL  401 (458)
Q Consensus       324 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  401 (458)
                      ...  .......|.++|+++++|||+.+|+++...+.+.+||+.+.....        ..-..|...|.+++|+|+.+++
T Consensus       474 g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~--------~~w~FHtakI~~~aWsP~n~~v  545 (603)
T KOG0318|consen  474 GDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT--------NRWAFHTAKINCVAWSPNNKLV  545 (603)
T ss_pred             CCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec--------ceeeeeeeeEEEEEeCCCceEE
Confidence            754  344567899999999999999999999999999999999764411        1122477889999999999999


Q ss_pred             EEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          402 LVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       402 ~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |+|+-|..|.||+++......... .|...|+.+.|-.+ ..|++.|.|..|++|++.
T Consensus       546 ATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  546 ATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence            999999999999998876554444 69989999999744 579999999999999873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=272.87  Aligned_cols=291  Identities=15%  Similarity=0.247  Sum_probs=249.1

Q ss_pred             eeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          139 FLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      ...++++|++.|+.++..+. ...+++++.|.++.+|++.......   ......|.+.|..+..+ +++++.++++.|+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~   85 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASWDG   85 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-cCCceEEeccccc
Confidence            55678999999999999886 5678999999999999987653321   23344578899999999 8999999999999


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      ++++||+.+++..+.+..|.  ..|.+++++++...+++++.|+             +|++|++....... +.-..+..
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~--~dVlsva~s~dn~qivSGSrDk-------------Tiklwnt~g~ck~t-~~~~~~~~  149 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHT--KDVLSVAFSTDNRQIVSGSRDK-------------TIKLWNTLGVCKYT-IHEDSHRE  149 (315)
T ss_pred             eEEEEEecCCcEEEEEEecC--CceEEEEecCCCceeecCCCcc-------------eeeeeeecccEEEE-EecCCCcC
Confidence            99999999999988888877  6899999999999999999996             99999998744444 33334478


Q ss_pred             cEEEEEEccC--CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699          295 AITSLCFNHN--GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       295 ~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                      .|+|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++..+....
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence            9999999998  68999999999999999999999999999999999999999999999999999999999998765332


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC----CC-----CCcEEEEEECCCCCeE
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL----PH-----GAAITTVDWHPTLPMF  443 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~----~h-----~~~v~~~~~~~~~~~l  443 (458)
                                ..+...|.+++|+|+...|+.+...+ |+|||+++...+..+.    +.     .....+++|++||..|
T Consensus       230 ----------l~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL  298 (315)
T KOG0279|consen  230 ----------LEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL  298 (315)
T ss_pred             ----------ccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence                      24667799999999998888777665 9999999886654443    22     3456788999999999


Q ss_pred             EEecCCCcEEEEeC
Q 012699          444 LTGSADHSVQVMSL  457 (458)
Q Consensus       444 ~s~~~dg~v~iw~l  457 (458)
                      .+|-.|+.|++|.+
T Consensus       299 f~g~td~~irv~qv  312 (315)
T KOG0279|consen  299 FAGYTDNVIRVWQV  312 (315)
T ss_pred             EeeecCCcEEEEEe
Confidence            99999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-43  Score=311.83  Aligned_cols=389  Identities=15%  Similarity=0.167  Sum_probs=302.0

Q ss_pred             CcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccc
Q 012699           24 SETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFE  103 (458)
Q Consensus        24 ~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  103 (458)
                      ...|+++++ +||++.|++++...-+++|...++.++.....+..   +..+.+.+.+.+..+++|+.|+.+++||+...
T Consensus        62 ~d~ita~~l-~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He---~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~  137 (775)
T KOG0319|consen   62 EDEITALAL-TPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE---APVITMAFDPTGTLLATGGADGRVKVWDIKNG  137 (775)
T ss_pred             hhhhheeee-cCCccEEEEeeccceEEEEEcccchHhHhHhhccC---CCeEEEEEcCCCceEEeccccceEEEEEeeCC
Confidence            445999999 99999999999999999999999976644333333   33466778888899999999999999998774


Q ss_pred             cCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC--EEEEEeCCCcEEEEecCCCCC
Q 012699          104 DVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN--NIASASVDGTVRIWTYDSSTP  181 (458)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~  181 (458)
                      .                                  +.+.|+||.+.|.++.|+|+-.  .|++|..|+++++||+.+...
T Consensus       138 ~----------------------------------~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  138 Y----------------------------------CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             E----------------------------------EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence            4                                  7889999999999999999754  489999999999999986654


Q ss_pred             CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC-----CCeEEEeec
Q 012699          182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV-----EPIFVSAAA  256 (458)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~  256 (458)
                       .......|.+.|++++|. +++..+++++.|..+.+||+..-+...++...+   .+.++.+-++     +.++++++.
T Consensus       184 -cl~~~~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye---~~E~vv~l~~~~~~~~~~~~TaG~  258 (775)
T KOG0319|consen  184 -CLHTMILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE---SLESVVRLREELGGKGEYIITAGG  258 (775)
T ss_pred             -HHHHHHhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhh---heeeEEEechhcCCcceEEEEecC
Confidence             233456688999999999 678889999999999999986544333322221   1222222222     122222222


Q ss_pred             cc-------------------------------------------------------------------------CCCCc
Q 012699          257 SR-------------------------------------------------------------------------RYGSS  263 (458)
Q Consensus       257 ~~-------------------------------------------------------------------------~~~~~  263 (458)
                      ++                                                                         +....
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~  338 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH  338 (775)
T ss_pred             CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence            11                                                                         12345


Q ss_pred             ceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC----ceeeeeeCCCCCeE
Q 012699          264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG----LQITGWPAHDSAIS  339 (458)
Q Consensus       264 ~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~  339 (458)
                      .+.+++.+.+++|++.+..+. .  +.+|...|.++....+|-+|++|+.|.++++|.++++    .++....+|.+.|.
T Consensus       339 laVATNs~~lr~y~~~~~~c~-i--i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg  415 (775)
T KOG0319|consen  339 LAVATNSPELRLYTLPTSYCQ-I--IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG  415 (775)
T ss_pred             EEEEeCCCceEEEecCCCceE-E--EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence            566777788888888776665 2  4689899999996677889999999999999987443    34566789999999


Q ss_pred             EEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          340 SILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       340 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      +++++..+ .+|+++|.|+++++|++...++...............|...|++++++|+.+++|+|+.|.+.+||+++..
T Consensus       416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~  495 (775)
T KOG0319|consen  416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL  495 (775)
T ss_pred             eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence            99997754 58999999999999999873222111111111233468899999999999999999999999999999977


Q ss_pred             CcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       419 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .....+.+|...|+++.|+|..+.|||+|.|++|+||.++
T Consensus       496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            7777778999999999999999999999999999999975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.3e-43  Score=308.59  Aligned_cols=416  Identities=15%  Similarity=0.174  Sum_probs=318.4

Q ss_pred             HHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           14 EAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        14 ~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      ...+..++.|...|++++| ++|+..+++++.|..+.|||+...+.....+.........++--.....+.++.+.+.+|
T Consensus       182 ~tcl~~~~~H~S~vtsL~~-~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g  260 (775)
T KOG0319|consen  182 RTCLHTMILHKSAVTSLAF-SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG  260 (775)
T ss_pred             chHHHHHHhhhhheeeeee-ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence            3467788999999999999 999999999999999999999655544222211111110000001112367999999999


Q ss_pred             cccccccccccCCccccee----eeccCCCCcCCCcceeccCCCeee-----eeeeeeeccCCCCeEEEEe-CCCCCEEE
Q 012699           94 SISPSKLEFEDVGAGDIIQ----MFNDGLYTENGRDAQGEEDFPEVK-----VDFLETFLGHTSPISCCRF-SSSGNNIA  163 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~-~~~~~~l~  163 (458)
                      .++.|+.............    ..+.......++.+....+...+-     ++..+.+-|..+.|..|+| .|+.++||
T Consensus       261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la  340 (775)
T KOG0319|consen  261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA  340 (775)
T ss_pred             eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence            9999998765422111111    111112222333332222222111     2466677888999999997 56778999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCCCCCCceee
Q 012699          164 SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTTDAFPSVLD  241 (458)
Q Consensus       164 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v~~  241 (458)
                      .++..+.+|+|++.+..+.   ....|...|.++... ..+.+|++|+.|.++++|.++.+.  ....-....|...|.+
T Consensus       341 VATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga  416 (775)
T KOG0319|consen  341 VATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA  416 (775)
T ss_pred             EEeCCCceEEEecCCCceE---EEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence            9999999999988877664   456677889999843 466899999999999999884433  2222233445578899


Q ss_pred             eeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCcee---EEe----ecCCCCCcEEEEEEccCCCEEEEEec
Q 012699          242 LKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM---TVL----PLGEDPPAITSLCFNHNGKILAASAV  313 (458)
Q Consensus       242 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~---~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (458)
                      ++++..+. .|++++.|             +++++|++...+..   ..+    ....|...|++++++|+.+++++|+.
T Consensus       417 va~~~~~asffvsvS~D-------------~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq  483 (775)
T KOG0319|consen  417 VAGSKLGASFFVSVSQD-------------CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ  483 (775)
T ss_pred             eeecccCccEEEEecCC-------------ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence            99877665 67777777             59999999862221   111    23467789999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                      |.+.++|+++......++.+|...|+++.|+|..+.++|+|.|++|+||.+.+.....         ..++|...|..+.
T Consensus       484 DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk---------T~eGH~~aVlra~  554 (775)
T KOG0319|consen  484 DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK---------TFEGHTSAVLRAS  554 (775)
T ss_pred             ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee---------eecCccceeEeee
Confidence            9999999999999999999999999999999999999999999999999999864332         3457889999999


Q ss_pred             EccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      |-.+|+.|++++.||.+++|++++......+-.|.+.|++++.+|...+++||+.||.|.+|.
T Consensus       555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            999999999999999999999999998888889999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-42  Score=271.06  Aligned_cols=305  Identities=19%  Similarity=0.308  Sum_probs=247.5

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..-.|++|+..|+.++....+-++|++++.|.++.+|+....             +                        
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-------------d------------------------   49 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-------------D------------------------   49 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-------------c------------------------
Confidence            345889999999999994455778999999999999986543             1                        


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                          .                    +.|              ..++.|.||...|..+..++||++.++++.|+++++||
T Consensus        50 ----~--------------------~~G--------------~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD   91 (315)
T KOG0279|consen   50 ----I--------------------KYG--------------VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD   91 (315)
T ss_pred             ----c--------------------ccC--------------ceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence                0                    111              16778899999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC--CCeEEE
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV--EPIFVS  253 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~  253 (458)
                      +.+++..  .....|...|.+++|+ ++.+.+++|+.|.+|++|++..+.. .++....+..-|.++.|+|+  ...+++
T Consensus        92 l~~g~~t--~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   92 LATGEST--RRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             ecCCcEE--EEEEecCCceEEEEec-CCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            9998653  3566788999999999 7888899999999999999876544 34444333478999999999  689999


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  333 (458)
                      ++.|+             ++++||+++.+....+.  +|...++.+++||||.+.++|+.||.+.+||++.++.+..+ .
T Consensus       168 ~s~Dk-------------tvKvWnl~~~~l~~~~~--gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~  231 (315)
T KOG0279|consen  168 ASWDK-------------TVKVWNLRNCQLRTTFI--GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-E  231 (315)
T ss_pred             ccCCc-------------eEEEEccCCcchhhccc--cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-c
Confidence            99995             99999999988877764  78889999999999999999999999999999999998876 4


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      |...|.+++|+|+...|+.+.. ..|+|||+.+...+........-.........-.+++|++||+.|+.|-.|+.|++|
T Consensus       232 a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  232 AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence            7889999999999877766554 459999999865443221111111122223445679999999999999999999999


Q ss_pred             Ecc
Q 012699          414 QVR  416 (458)
Q Consensus       414 ~~~  416 (458)
                      .+.
T Consensus       311 qv~  313 (315)
T KOG0279|consen  311 QVA  313 (315)
T ss_pred             Eee
Confidence            874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-42  Score=307.41  Aligned_cols=286  Identities=19%  Similarity=0.314  Sum_probs=247.8

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      .+.||+..|.+++++.+...++||+ .+.+++|+..+.+++.   +.... -+.+..|. |+++++++|...|.+.+||+
T Consensus       368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciR---Ti~~~-y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIR---TITCG-YILASKFV-PGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeE---Eeccc-cEEEEEec-CCCceEEEeccCCceEEEEe
Confidence            4568999999999999988777775 5789999999888764   23233 67888888 78899999999999999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-----CceeEEeecC-----C
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-----WKAMTVLPLG-----E  291 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-----~~~~~~~~~~-----~  291 (458)
                      .+...+.+++.|+  +.++.++..|++..+++++.|.             +|++||..-     +...+.+.+.     .
T Consensus       442 aS~~l~Eti~AHd--gaIWsi~~~pD~~g~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  442 ASASLVETIRAHD--GAIWSISLSPDNKGFVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTRTLE  506 (888)
T ss_pred             ehhhhhhhhhccc--cceeeeeecCCCCceEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccceEEe
Confidence            9999988888666  7899999999999999999995             999999742     1111111111     1


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      -+..|.|+.+||||++|+++-.|.+++||-+.+.+....+-+|.-||.|+..+||++.++|||.|.+|++|-+.=+    
T Consensus       507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG----  582 (888)
T KOG0306|consen  507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG----  582 (888)
T ss_pred             ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc----
Confidence            2356999999999999999999999999999999999999999999999999999999999999999999988754    


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS  451 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  451 (458)
                         .|++  ....|...|.++.|-|+..++.+++.|+.++-||-..-+.+..+.+|...|++++.+|+|.+++++|.|.+
T Consensus       583 ---DCHK--S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  583 ---DCHK--SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             ---hhhh--hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence               3322  34578899999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             EEEEeC
Q 012699          452 VQVMSL  457 (458)
Q Consensus       452 v~iw~l  457 (458)
                      ||+|..
T Consensus       658 IRlwE~  663 (888)
T KOG0306|consen  658 IRLWER  663 (888)
T ss_pred             eEeeec
Confidence            999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-41  Score=263.76  Aligned_cols=295  Identities=17%  Similarity=0.223  Sum_probs=254.3

Q ss_pred             cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699           82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN  161 (458)
Q Consensus        82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  161 (458)
                      ..-+|++++.|.+|++|......                                  +.++++...+.|+.+...|+++.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~----------------------------------C~rTiqh~dsqVNrLeiTpdk~~   54 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGI----------------------------------CSRTIQHPDSQVNRLEITPDKKD   54 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCe----------------------------------EEEEEecCccceeeEEEcCCcch
Confidence            45789999999999999976633                                  77788878889999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699          162 IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  241 (458)
                      ||+++. -.||+||+.++.+........+...|.++.|. .+++.+++|++||+++|||++...+.+.++..   .+|.+
T Consensus        55 LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~  129 (311)
T KOG0315|consen   55 LAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNT  129 (311)
T ss_pred             hhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCC---CCcce
Confidence            998875 67999999998886555666677899999999 89999999999999999999996665555544   78999


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEe
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD  321 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  321 (458)
                      +..+|+...|+++..+             |.|++||+....+...+. ++....|.++...|+|.+++.+...|..++|+
T Consensus       130 vvlhpnQteLis~dqs-------------g~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~  195 (311)
T KOG0315|consen  130 VVLHPNQTELISGDQS-------------GNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWR  195 (311)
T ss_pred             EEecCCcceEEeecCC-------------CcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence            9999999999999888             699999999887776664 34457899999999999999999999999999


Q ss_pred             CCCC------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          322 MSAG------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       322 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      +-+.      +++.+++.|++.+..+.+|||+++|+++|.|.+++||+..+.-.        .......+..++...+||
T Consensus       196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k--------le~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK--------LELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee--------eEEEeecCCceEEeeeec
Confidence            8653      46778899999999999999999999999999999999987611        111234677899999999


Q ss_pred             cCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699          396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH  437 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~  437 (458)
                      .||+||++|+.|+.+++|++..++.+....+|.....+++..
T Consensus       268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999999999999999999988887777653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.2e-41  Score=296.44  Aligned_cols=383  Identities=19%  Similarity=0.224  Sum_probs=297.6

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEecccccccc-ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLE  101 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  101 (458)
                      -...|+|++- ++|...||.|-.||.++||+..++... ..-.|.+.+..     +.++..+..+++|+.|+.|.+||+-
T Consensus        64 ~k~evt~l~~-~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~-----l~fd~~G~rlaSGskDt~IIvwDlV  137 (888)
T KOG0306|consen   64 KKAEVTCLRS-SDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTT-----LKFDKIGTRLASGSKDTDIIVWDLV  137 (888)
T ss_pred             ccceEEEeec-cCCcceEEEEecCceEEeeccCCCceeeeecccccceEE-----EEEcccCceEeecCCCccEEEEEec
Confidence            3468999999 999999999999999999999977443 33345444444     6788889999999999999999986


Q ss_pred             cccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC
Q 012699          102 FEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP  181 (458)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  181 (458)
                      ...                                  -+..|+||.+.|+.+-|..+.+++++++.|+.|++||+++..+
T Consensus       138 ~E~----------------------------------Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC  183 (888)
T KOG0306|consen  138 GEE----------------------------------GLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC  183 (888)
T ss_pred             cce----------------------------------eeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence            533                                  3456889999999999999888999999999999999999887


Q ss_pred             CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC------------------------CceeeeccCCC---
Q 012699          182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA------------------------KRVVCDLNTTD---  234 (458)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~------------------------~~~~~~~~~~~---  234 (458)
                      ..  ....|.+.++.+++.+   ..+++++.|+.+++|++..                        ++.+.....+.   
T Consensus       184 f~--Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~  258 (888)
T KOG0306|consen  184 FE--THVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRF  258 (888)
T ss_pred             ee--EEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccE
Confidence            54  4567889999999982   7899999999999999811                        00000000000   


Q ss_pred             ------------------------------------C------------------------CCceeeeeecCCCCeE---
Q 012699          235 ------------------------------------A------------------------FPSVLDLKCSPVEPIF---  251 (458)
Q Consensus       235 ------------------------------------~------------------------~~~v~~~~~~~~~~~~---  251 (458)
                                                          .                        ...+.++.+.|.+...   
T Consensus       259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l  338 (888)
T KOG0306|consen  259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL  338 (888)
T ss_pred             EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence                                                0                        0012233333322211   


Q ss_pred             EE----------eeccc--------------------------CCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          252 VS----------AAASR--------------------------RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       252 ~~----------~~~~~--------------------------~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      +.          -....                          ......+.....+.+++|+..+.+++.++..    ..
T Consensus       339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~----~y  414 (888)
T KOG0306|consen  339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC----GY  414 (888)
T ss_pred             EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc----cc
Confidence            00          00000                          0011222334447999999999999998863    26


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe------
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ------  369 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------  369 (458)
                      +.+..|-|.++++++|...|.+.+||+.+...+.++++|.+.|+.++.+||++.++++|.|.+|++||..-...      
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~  494 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK  494 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999863211      


Q ss_pred             -eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          370 -VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       370 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                       .+..    ...........+.++.+||||++||++=-|+++++|-+++.+-...+.||.-||.|+..+||+++++|||.
T Consensus       495 k~lsl----~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA  570 (888)
T KOG0306|consen  495 KVLSL----KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA  570 (888)
T ss_pred             eeeee----ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence             1100    11112235667999999999999999999999999999999888889999999999999999999999999


Q ss_pred             CCcEEEEeCC
Q 012699          449 DHSVQVMSLS  458 (458)
Q Consensus       449 dg~v~iw~l~  458 (458)
                      |.+|+||-++
T Consensus       571 DKnVKiWGLd  580 (888)
T KOG0306|consen  571 DKNVKIWGLD  580 (888)
T ss_pred             CCceEEeccc
Confidence            9999999874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-40  Score=270.93  Aligned_cols=331  Identities=16%  Similarity=0.260  Sum_probs=285.2

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +..|..|+..|-+++. +|+.++++||+.|....+|+..++.                                      
T Consensus        57 ~~tF~~H~~svFavsl-~P~~~l~aTGGgDD~AflW~~~~ge--------------------------------------   97 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSL-HPNNNLVATGGGDDLAFLWDISTGE--------------------------------------   97 (399)
T ss_pred             eeehhhcCCceEEEEe-CCCCceEEecCCCceEEEEEccCCc--------------------------------------
Confidence            5688999999999999 9999999999999999999987772                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                ....+.+|...|+++.|+.+|.+||||+.+|.|+||+.
T Consensus        98 ------------------------------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   98 ------------------------------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ------------------------------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence                                                      22345699999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      .++.....  .......+.-+.|+ +....|++|+.||.+-+|.+.++...+.+..+.  .++++-.|.|+|+.++++..
T Consensus       136 stg~~~~~--~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~--~~ct~G~f~pdGKr~~tgy~  210 (399)
T KOG0296|consen  136 STGGEQWK--LDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN--SPCTCGEFIPDGKRILTGYD  210 (399)
T ss_pred             ccCceEEE--eecccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecCCC--CCcccccccCCCceEEEEec
Confidence            88876432  22345678889999 588999999999999999999988888887765  78999999999999999998


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP----  332 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----  332 (458)
                      +             |+|++||+++++++..+.... .....++.++..+..++.|+.++.+++.+..+++.+....    
T Consensus       211 d-------------gti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  211 D-------------GTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             C-------------ceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence            8             699999999999999887544 3567889999999999999999999999988888777665    


Q ss_pred             ----CCCCCeEEEEEcC---CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          333 ----AHDSAISSILFGP---DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       333 ----~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                          .+...+.++.+.|   .-++.|+|+-||+|.|||+....          +...-.|...|..+.|-+ ..+|++++
T Consensus       277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~-t~~l~t~c  345 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLN-TDYLLTAC  345 (399)
T ss_pred             cccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcC-cchheeec
Confidence                3455556666655   45678899999999999998652          222335677799999999 89999999


Q ss_pred             CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          406 GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       406 ~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+|.|++||.+++.....+.||..+|.+++.+|+.++++|+|.|++.+||+++
T Consensus       346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999999999999999999999999863

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.6e-40  Score=278.48  Aligned_cols=279  Identities=19%  Similarity=0.308  Sum_probs=242.0

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      +..|++++|+.+|.+||+|+.||.+++|+.......   ....|.++|.++.|+ ..+.+|++++.|+++.+||..++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~---tl~~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS---TLGQHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh---hhhccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceE
Confidence            457999999999999999999999999998765432   355688999999999 8999999999999999999999999


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK  306 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  306 (458)
                      ...+..+.  .+..++.|-.+. .+++.+.+             |.|+++.+....+..++.  +|.++|.++.|+|.|.
T Consensus       311 ~q~f~~~s--~~~lDVdW~~~~-~F~ts~td-------------~~i~V~kv~~~~P~~t~~--GH~g~V~alk~n~tg~  372 (524)
T KOG0273|consen  311 KQQFEFHS--APALDVDWQSND-EFATSSTD-------------GCIHVCKVGEDRPVKTFI--GHHGEVNALKWNPTGS  372 (524)
T ss_pred             EEeeeecc--CCccceEEecCc-eEeecCCC-------------ceEEEEEecCCCcceeee--cccCceEEEEECCCCc
Confidence            88887775  344677776554 45555555             599999999989988886  5889999999999999


Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC---------CEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE---------TSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      +|++++.|++++||.+........+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.+...     
T Consensus       373 LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~-----  447 (524)
T KOG0273|consen  373 LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT-----  447 (524)
T ss_pred             eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe-----
Confidence            99999999999999999999999999999999999999954         5699999999999999998755442     


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                          ...|..+|++++|||+|+++|+|+.||.|++|+.++.+.. +...-.+.|..++|+.+|..|..+-.|+.+++-|+
T Consensus       448 ----f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~-~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  448 ----LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV-KSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee-EeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                3358888999999999999999999999999999998544 33445567999999999999999999999999876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.1e-41  Score=265.95  Aligned_cols=297  Identities=15%  Similarity=0.281  Sum_probs=253.1

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ++..+.+|.+.|+.+.|+|+|.+||||+.|..|.+|++.....- ......|.+.|..+.|. .+++.+++++.|.+++.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-~~~lkgHsgAVM~l~~~-~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-FWVLKGHSGAVMELHGM-RDGSHILSCGTDKTVRG  116 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-eeeeccccceeEeeeec-cCCCEEEEecCCceEEE
Confidence            55567899999999999999999999999999999997554332 22345788999999999 88999999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||+++|+....++.+.  .-+..+....-|..++..+.+.            |++++||+++...++.+.   .+..+++
T Consensus       117 wD~~tG~~~rk~k~h~--~~vNs~~p~rrg~~lv~SgsdD------------~t~kl~D~R~k~~~~t~~---~kyqltA  179 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHT--SFVNSLDPSRRGPQLVCSGSDD------------GTLKLWDIRKKEAIKTFE---NKYQLTA  179 (338)
T ss_pred             Eecccceeeehhcccc--ceeeecCccccCCeEEEecCCC------------ceEEEEeecccchhhccc---cceeEEE
Confidence            9999999999888876  5688888777777666665554            699999999988888763   3456999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +.|...+..+.+|+-|+.|++||++.......+.+|.++|+.+..+|+|.++.+-+.|.++++||++.......   +..
T Consensus       180 v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R---~v~  256 (338)
T KOG0265|consen  180 VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR---CVK  256 (338)
T ss_pred             EEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc---eEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999986432111   001


Q ss_pred             ccCC--CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          379 FCDP--ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       379 ~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ....  ...+.....++|+|+++.+.+|+.|..+++||..+...+..+.||.+.|++++|+|...+|.+++.|.+|++=+
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            1111  12234456789999999999999999999999999888999999999999999999999999999999998755


Q ss_pred             C
Q 012699          457 L  457 (458)
Q Consensus       457 l  457 (458)
                      +
T Consensus       337 i  337 (338)
T KOG0265|consen  337 I  337 (338)
T ss_pred             c
Confidence            4

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.9e-40  Score=256.99  Aligned_cols=274  Identities=14%  Similarity=0.221  Sum_probs=231.8

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCC
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFP  237 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~  237 (458)
                      -+|++++.|.+||+|...++.+..  ......+.|+.+... +++..|++++. ..||+||++++.+  +.++..+.  .
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~r--Tiqh~dsqVNrLeiT-pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~--k   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSR--TIQHPDSQVNRLEIT-PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHT--K   84 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEE--EEecCccceeeEEEc-CCcchhhhccC-CeeEEEEccCCCCCceeEEeccC--C
Confidence            478999999999999999998764  233345789999999 67777777765 5899999998765  55555554  6


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI  317 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  317 (458)
                      .|..+.|..+|++++++++|             |+++|||++...+.+.+.   +..+|+++..+|+...|++|..+|.|
T Consensus        85 NVtaVgF~~dgrWMyTgseD-------------gt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~i  148 (311)
T KOG0315|consen   85 NVTAVGFQCDGRWMYTGSED-------------GTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNI  148 (311)
T ss_pred             ceEEEEEeecCeEEEecCCC-------------ceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcE
Confidence            89999999999999999999             699999999977777664   55789999999999999999999999


Q ss_pred             EEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          318 HMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       318 ~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                      ++||+....+...+ +....+|.++...|||++++.+...|+.++|++.+.....   ..........|...+..+.+||
T Consensus       149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s---~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS---ELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc---cceEhhheecccceEEEEEECC
Confidence            99999887665544 3445689999999999999999999999999998744332   2223344567899999999999


Q ss_pred             CCCEEEEEeCCccEEEEEccCC-CcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          397 NGRRLLVTSGSVRAPIYQVRGH-ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       397 ~g~~l~~~~~~~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |+++||+++.|.+++||+.++. +....+.+|..-+++++||.||++|+||+.|+.+++|+++
T Consensus       226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            9999999999999999999988 4445566899999999999999999999999999999974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.9e-41  Score=279.23  Aligned_cols=283  Identities=16%  Similarity=0.300  Sum_probs=244.7

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .-..+|..+.|.|+|+.|++|+..|.+.+|+..+-.  .......|..+|.++.|+ .++.++++|+.+|.|+.|+..-.
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchh
Confidence            345689999999999999999999999999874322  233456688999999999 89999999999999999998754


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      ... .+..+ +...|++++|+|+...+++++.|             |.|+|||....+....+  .+|.-.|.++.|+|.
T Consensus       171 nVk-~~~ah-h~eaIRdlafSpnDskF~t~SdD-------------g~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  171 NVK-IIQAH-HAEAIRDLAFSPNDSKFLTCSDD-------------GTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPT  233 (464)
T ss_pred             hhH-HhhHh-hhhhhheeccCCCCceeEEecCC-------------CeEEEEeccCCchhhee--ccCCCCcceeccCCc
Confidence            433 23332 22579999999999999999998             59999999988877776  478788999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES  384 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  384 (458)
                      ..++++|+.|..|++||.++++++.++.+|...|..+.|+|++++|+++|.|..++++|++..+++         .....
T Consensus       234 kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl---------~~~r~  304 (464)
T KOG0284|consen  234 KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL---------FTYRG  304 (464)
T ss_pred             cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH---------HHhhc
Confidence            999999999999999999999999999999999999999999999999999999999999965543         33446


Q ss_pred             CCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          385 SKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       385 ~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      |...++++.|+| ...+|.+|+.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       305 Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  305 HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            888899999999 45677889999999999998555554444 7999999999999999999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=250.18  Aligned_cols=290  Identities=16%  Similarity=0.287  Sum_probs=238.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCC-Cc-cccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          138 DFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPA-SR-NATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      ..++.+++|.+++..++|+|- |..||||+.|+.|++|+..++... .+ ...-.|...|.+++|+ |.+++|++++.|.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g~~La~aSFD~   83 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHGRYLASASFDA   83 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCCcEEEEeeccc
Confidence            367788999999999999998 889999999999999998853221 11 1122467889999999 7788999999999


Q ss_pred             cEEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCC
Q 012699          215 GIKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGE  291 (458)
Q Consensus       215 ~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~  291 (458)
                      ++.||.-..++  ++.+++.|+  +.|.+++|+++|.+|++++.|+             .|-+|........... .+.+
T Consensus        84 t~~Iw~k~~~efecv~~lEGHE--nEVK~Vaws~sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHE--NEVKCVAWSASGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccc--cceeEEEEcCCCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeeecc
Confidence            99999877654  455555555  7899999999999999999996             9999998754433322 3468


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCC---CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMS---AGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      |...|..+.|+|...+|++++.|.+|++|+-.   ..++++++.+|...|.+++|+|.|..|++++.|++++||..... 
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-  227 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-  227 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-
Confidence            88999999999999999999999999999876   34678999999999999999999999999999999999986632 


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC--ccc-----ccCCCCCcEEEEEECCC-C
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA--SGM-----RTLPHGAAITTVDWHPT-L  440 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~--~~~-----~~~~h~~~v~~~~~~~~-~  440 (458)
                                  -+..+...+..++|.  ...|+++++|+.|++|.-....  +..     ....|...|++++|.|. .
T Consensus       228 ------------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~  293 (312)
T KOG0645|consen  228 ------------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS  293 (312)
T ss_pred             ------------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence                        112456678889998  6689999999999999876431  111     12269999999999995 5


Q ss_pred             CeEEEecCCCcEEEEeCC
Q 012699          441 PMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       441 ~~l~s~~~dg~v~iw~l~  458 (458)
                      .+|++|+.||.|++|.+.
T Consensus       294 ~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  294 NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CceeecCCCceEEEEEec
Confidence            689999999999999873

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-39  Score=263.58  Aligned_cols=289  Identities=18%  Similarity=0.311  Sum_probs=260.9

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ....+.+|..+|+.+-|+|+-..++++++|++|++||..+++..  .....|...+..++|+ ..+.++++++.|=.+.+
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~LrGHt~sv~di~~~-a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLRGHTDSVFDISFD-ASGKYLATCSSDLSAKL  176 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhhccccceeEEEEe-cCccEEEecCCccchhh
Confidence            55667799999999999999999999999999999999999874  3455677789999999 88999999999988999


Q ss_pred             EEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          219 WNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      ||.++ -+++..+..++  ..|.++.|-|.+.++++++.|.             +|+.|++.++-++.+++  +|+..|.
T Consensus       177 Wd~~~~~~c~ks~~gh~--h~vS~V~f~P~gd~ilS~srD~-------------tik~We~~tg~cv~t~~--~h~ewvr  239 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHE--HGVSSVFFLPLGDHILSCSRDN-------------TIKAWECDTGYCVKTFP--GHSEWVR  239 (406)
T ss_pred             eeHHHHHHHHHHhcCcc--cceeeEEEEecCCeeeeccccc-------------ceeEEecccceeEEecc--CchHhEE
Confidence            99987 45555555555  5799999999999999999995             99999999999999885  7888999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC---------------CCEEEEecCCCeEEEE
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD---------------ETSIFSLGSDGKIIEW  362 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iw  362 (458)
                      .+..+.||..+++++.|.++++|-+.++++...++.|+-+|.+++|.|.               +.++.+++.|++|++|
T Consensus       240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence            9999999999999999999999999999999999999999999999772               2589999999999999


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCe
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPM  442 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  442 (458)
                      |+.++..+...         .+|..+|..++|+|.|+||+++.+|+++++||++..........|...|+++.|+.+..+
T Consensus       320 dv~tg~cL~tL---------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~  390 (406)
T KOG0295|consen  320 DVSTGMCLFTL---------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY  390 (406)
T ss_pred             eccCCeEEEEE---------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence            99988655533         378999999999999999999999999999999999888888899999999999999999


Q ss_pred             EEEecCCCcEEEEe
Q 012699          443 FLTGSADHSVQVMS  456 (458)
Q Consensus       443 l~s~~~dg~v~iw~  456 (458)
                      ++||+-|.++++|.
T Consensus       391 VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  391 VVTGSVDQTVKVWE  404 (406)
T ss_pred             EEeccccceeeeee
Confidence            99999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-39  Score=291.70  Aligned_cols=276  Identities=18%  Similarity=0.308  Sum_probs=231.1

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      -...++|..| ++|+.+||.|-.|..+++|.+....+. .+++..+...              +-+.+.|-.+.+.|...
T Consensus       377 t~~~v~ca~f-SddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~--------------~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  377 TYQGVTCAEF-SDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSN--------------IDTESADVDVDMLDDDS  440 (707)
T ss_pred             cCCcceeEee-cCCcchhhccccccEEEEEecchhhhc-cccchhhhcc--------------ccccccchhhhhccccC
Confidence            3445999999 999999999999999999998765322 2222221111              11122222222212111


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA  182 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  182 (458)
                      .                                  ...+++.||.++|..+.|+|+.++|++|++|+++|+|.+.+....
T Consensus       441 ~----------------------------------~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~  486 (707)
T KOG0263|consen  441 S----------------------------------GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL  486 (707)
T ss_pred             C----------------------------------ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE
Confidence            0                                  144568899999999999999999999999999999999988775


Q ss_pred             CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC
Q 012699          183 SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS  262 (458)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      .  ....|..+|+.+.|+ |.+-++++++.|++-++|..+...+.+.+..+.  +.|.++.|+|+..++++|+.|+    
T Consensus       487 V--~y~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghl--sDV~cv~FHPNs~Y~aTGSsD~----  557 (707)
T KOG0263|consen  487 V--IYKGHLAPVWDVQFA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHL--SDVDCVSFHPNSNYVATGSSDR----  557 (707)
T ss_pred             E--EecCCCcceeeEEec-CCceEEEecCCCceeeeeecccCCchhhhcccc--cccceEEECCcccccccCCCCc----
Confidence            4  344778899999999 789999999999999999999988888887776  7899999999999999999996    


Q ss_pred             cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699          263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL  342 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~  342 (458)
                               ++++||..++..++.|.  +|.++|.+++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|.++.
T Consensus       558 ---------tVRlWDv~~G~~VRiF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  558 ---------TVRLWDVSTGNSVRIFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS  626 (707)
T ss_pred             ---------eEEEEEcCCCcEEEEec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence                     99999999999999985  7999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      |+.+|..|++++.|..|++||+....
T Consensus       627 FS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  627 FSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EecCCCEEEecCCCCeEEEEEchhhc
Confidence            99999999999999999999998643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.7e-39  Score=269.02  Aligned_cols=290  Identities=19%  Similarity=0.355  Sum_probs=244.9

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCC------cc------ccccCCCceEEEEEecCCC
Q 012699          138 DFLETFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPAS------RN------ATIYCGTEIMSLEWECKSD  204 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~------~~------~~~~~~~~v~~~~~~~~~~  204 (458)
                      ...+.++ |..+|.+.+|+|-.. .+++++.|-+.++|++.......      +.      ........|++++|+ .++
T Consensus       170 ~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn-~~G  247 (524)
T KOG0273|consen  170 SKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN-NDG  247 (524)
T ss_pred             cceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec-CCC
Confidence            3445555 999999999999765 89999999999999987521110      00      112234679999999 899


Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      ..|++|..||.+++|+.. |..+.++..|.  ++|.++.|+..|.++++++.|             +++.+||..++...
T Consensus       248 ~~LatG~~~G~~riw~~~-G~l~~tl~~Hk--gPI~slKWnk~G~yilS~~vD-------------~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  248 TLLATGSEDGEARIWNKD-GNLISTLGQHK--GPIFSLKWNKKGTYILSGGVD-------------GTTILWDAHTGTVK  311 (524)
T ss_pred             CeEEEeecCcEEEEEecC-chhhhhhhccC--CceEEEEEcCCCCEEEeccCC-------------ccEEEEeccCceEE
Confidence            999999999999999976 44555555554  899999999999999999999             59999999999998


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      +.+.+..  .+-..+.|-.+ ..|++.+.|+.|+|+.+....++.++.+|.++|.++.|+|.+.+|+++|+|++++||.+
T Consensus       312 q~f~~~s--~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  312 QQFEFHS--APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             Eeeeecc--CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            8887543  34466778654 46888999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCC---------CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEE
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG---------RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD  435 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~  435 (458)
                      ....         .......|...|..+.|+|.|         ..+++++.|++|++||+..+..+..+..|..+|.+++
T Consensus       389 ~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva  459 (524)
T KOG0273|consen  389 GQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA  459 (524)
T ss_pred             CCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence            7543         222344678889999999965         4789999999999999999999999999999999999


Q ss_pred             ECCCCCeEEEecCCCcEEEEeC
Q 012699          436 WHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       436 ~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      |+|+|++||+|+.||.|.||+.
T Consensus       460 fS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             ecCCCcEEEecCCCCeeEeccc
Confidence            9999999999999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.7e-40  Score=277.89  Aligned_cols=295  Identities=15%  Similarity=0.258  Sum_probs=251.7

Q ss_pred             eeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699          138 DFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI  216 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  216 (458)
                      +.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++...... ......|..+|..++|+ ..+..+++++.|+.|
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-lrtf~gH~k~Vrd~~~s-~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-LRTFKGHRKPVRDASFN-NCGTSFLSASFDRFL  282 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-ehhhhcchhhhhhhhcc-ccCCeeeeeecceee
Confidence            56788999999999999999 8999999999999999999773322 33556788899999999 889999999999999


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      ++||+++|++...+...   ..+.++.|+|++ +.+++|+.+             +.|+.||+++++.++.+.  .|-+.
T Consensus       283 KlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n~fl~G~sd-------------~ki~~wDiRs~kvvqeYd--~hLg~  344 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLD---KVPTCVKFHPDNQNIFLVGGSD-------------KKIRQWDIRSGKVVQEYD--RHLGA  344 (503)
T ss_pred             eeeccccceEEEEEecC---CCceeeecCCCCCcEEEEecCC-------------CcEEEEeccchHHHHHHH--hhhhh
Confidence            99999999999988876   478999999999 677777777             599999999999888764  67788


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      |..+.|-++|+++++.+.|+.++||+.+.+-++..... +.-...++..+|++++++.-+.|+.|.++.+...-+..   
T Consensus       345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n---  421 (503)
T KOG0282|consen  345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN---  421 (503)
T ss_pred             eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC---
Confidence            99999999999999999999999999988766654432 23356789999999999999999999999976532221   


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEE
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQ  453 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~  453 (458)
                       ..+........+.-..+.|||||.+|++|..+|.+.+||.++.+....+..|..++..+.|+|... .+|+|+.||.|+
T Consensus       422 -kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik  500 (503)
T KOG0282|consen  422 -KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK  500 (503)
T ss_pred             -HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence             112222223455677899999999999999999999999999988888889999999999999876 899999999999


Q ss_pred             EEe
Q 012699          454 VMS  456 (458)
Q Consensus       454 iw~  456 (458)
                      +|+
T Consensus       501 iwd  503 (503)
T KOG0282|consen  501 IWD  503 (503)
T ss_pred             ecC
Confidence            996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-39  Score=289.19  Aligned_cols=280  Identities=18%  Similarity=0.291  Sum_probs=241.8

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      .+..++..-...++|..|++|+++||.|-.|..|++|.+...+...    ..+...+          ..+=+.+.|-.+.
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~----lk~~~~l----------~~~d~~sad~~~~  434 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK----LKDASDL----------SNIDTESADVDVD  434 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc----ccchhhh----------ccccccccchhhh
Confidence            3555666666789999999999999999999999999987654321    1111111          1122334444566


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +.|..+.....++..|.  ++|....|+|+.++|++++.|.             ++++|.+.+..+.-.+.  +|..+|.
T Consensus       435 ~~D~~~~~~~~~L~GH~--GPVyg~sFsPd~rfLlScSED~-------------svRLWsl~t~s~~V~y~--GH~~PVw  497 (707)
T KOG0263|consen  435 MLDDDSSGTSRTLYGHS--GPVYGCSFSPDRRFLLSCSEDS-------------SVRLWSLDTWSCLVIYK--GHLAPVW  497 (707)
T ss_pred             hccccCCceeEEeecCC--CceeeeeecccccceeeccCCc-------------ceeeeecccceeEEEec--CCCccee
Confidence            77777777666666665  8999999999999999999994             99999999998888775  8889999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .+.|+|.|-|||+++.|++.++|......+++.+.+|.+.|.|+.|+|+..|+++||.|.++++||+.++..+...    
T Consensus       498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF----  573 (707)
T KOG0263|consen  498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF----  573 (707)
T ss_pred             eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988665422    


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                           .+|..+|.+++|||+|++|++|+.|+.|.+||+.++..+..+.+|.+.|.++.|+.+|..||+||.|.+|++||+
T Consensus       574 -----~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  574 -----TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             -----cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence                 469999999999999999999999999999999999999999999999999999999999999999999999997

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-38  Score=258.41  Aligned_cols=288  Identities=16%  Similarity=0.295  Sum_probs=252.8

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..+.+.+|.+.|.|+++.|-.+++++|+.|++++|||+.++++..  ....|-..|..++++ +...++++++.|+.|+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--tltGhi~~vr~vavS-~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--TLTGHIETVRGVAVS-KRHPYLFSAGEDKQVK  218 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--eecchhheeeeeeec-ccCceEEEecCCCeeE
Confidence            4667889999999999999999999999999999999999998753  344577889999999 7778999999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      .||++.++.++.+..|-  +.|++++.+|.-..+++++.|.             .+++||+++...+..+.  +|..+|.
T Consensus       219 CwDLe~nkvIR~YhGHl--S~V~~L~lhPTldvl~t~grDs-------------t~RvWDiRtr~~V~~l~--GH~~~V~  281 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGHL--SGVYCLDLHPTLDVLVTGGRDS-------------TIRVWDIRTRASVHVLS--GHTNPVA  281 (460)
T ss_pred             EEechhhhhHHHhcccc--ceeEEEeccccceeEEecCCcc-------------eEEEeeecccceEEEec--CCCCcce
Confidence            99999999988776655  7899999999999999999995             99999999988877764  8999999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .+.+.|-...+++|+.|++|++||++.++...++..|...+++++.+|....+++++.| .|+-|++..+.         
T Consensus       282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~---------  351 (460)
T KOG0285|consen  282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE---------  351 (460)
T ss_pred             eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc---------
Confidence            99999988889999999999999999999999999999999999999999999999888 69999998653         


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--------CCCCcEEEEEECCCCCeEEEecCC
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--------PHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      ...+...+..-++.++...|| ++++|+.+|.+.+||.+++.......        ..+..|.+.+|...|..|++|..|
T Consensus       352 f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ead  430 (460)
T KOG0285|consen  352 FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEAD  430 (460)
T ss_pred             hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCC
Confidence            223345677888999988877 66789999999999998875544332        235679999999999999999999


Q ss_pred             CcEEEEe
Q 012699          450 HSVQVMS  456 (458)
Q Consensus       450 g~v~iw~  456 (458)
                      .+|++|.
T Consensus       431 KtIk~~k  437 (460)
T KOG0285|consen  431 KTIKMYK  437 (460)
T ss_pred             cceEEEe
Confidence            9999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.3e-37  Score=271.86  Aligned_cols=287  Identities=23%  Similarity=0.419  Sum_probs=247.3

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      +++++|.++|++++|+|++++|++++.||.+++|++.+.+...  ....+...+..+.|. ++++.+++++.+|.+++||
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLKGHTGPVRDVAAS-ADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--EEecCCcceeEEEEC-CCCCEEEEEcCCCeEEEEE
Confidence            4677999999999999999999999999999999998776432  234456778899999 5668899999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      +.+++....+..+.  ..+.++.|++++.++++++.+             |.+.+||+++++....+.  .|...+.+++
T Consensus        80 ~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~--~~~~~i~~~~  142 (289)
T cd00200          80 LETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRD-------------KTIKVWDVETGKCLTTLR--GHTDWVNSVA  142 (289)
T ss_pred             cCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCC-------------CeEEEEECCCcEEEEEec--cCCCcEEEEE
Confidence            99887777666544  579999999998888887755             599999999877777665  5677899999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      |+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.+++||++.......        
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------  214 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--------  214 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--------
Confidence            999999999888899999999999999999999999999999999999999999999999999986433221        


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                       ...+...+.+++|+|++.++++++.++.+++|++........+..|...|.+++|+|++++|++++.||.|++|+
T Consensus       215 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         215 -LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence             114556899999999998988888899999999998777777778999999999999999999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=264.31  Aligned_cols=301  Identities=19%  Similarity=0.256  Sum_probs=245.8

Q ss_pred             CeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEc
Q 012699          133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGT  211 (458)
Q Consensus       133 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~  211 (458)
                      ..++.+..+.+..|++.|.-+.||++|++|||++.|.+..+|++....... ......|..+|..+.|+ |+.++|++++
T Consensus       210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS-PDdryLlaCg  288 (519)
T KOG0293|consen  210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS-PDDRYLLACG  288 (519)
T ss_pred             ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC-CCCCeEEecC
Confidence            344556778899999999999999999999999999999999986544321 23445678899999999 7788899999


Q ss_pred             CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      .+..+.+||+.+|.....+... ....+.+++|.||+..+++|+.|+             .+..||+..... ...+. .
T Consensus       289 ~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr-------------~i~~wdlDgn~~-~~W~g-v  352 (519)
T KOG0293|consen  289 FDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDR-------------TIIMWDLDGNIL-GNWEG-V  352 (519)
T ss_pred             chHheeeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCC-------------cEEEecCCcchh-hcccc-c
Confidence            9999999999999988877765 446899999999999999999995             999999876432 22211 1


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      ....|.++++.+||+++++.+.|..|++|+.++...+..+. ...+|+++..|.+++++++.-.+..+.+||+.....+.
T Consensus       353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~  431 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR  431 (519)
T ss_pred             ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence            22469999999999999999999999999998766554433 46789999999999999999999999999999653332


Q ss_pred             EeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCC
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSAD  449 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d  449 (458)
                            ++ ........+..-+|.- +..++++|++|+.|+||+..+++.+..+.||...|++++|+|..+ ++|+||+|
T Consensus       432 ------kY-~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD  504 (519)
T KOG0293|consen  432 ------KY-FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD  504 (519)
T ss_pred             ------Hh-hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence                  11 1122333455556654 558999999999999999999999999999999999999999887 89999999


Q ss_pred             CcEEEEeCC
Q 012699          450 HSVQVMSLS  458 (458)
Q Consensus       450 g~v~iw~l~  458 (458)
                      |+||||.++
T Consensus       505 gtIRIWg~~  513 (519)
T KOG0293|consen  505 GTIRIWGPS  513 (519)
T ss_pred             CeEEEecCC
Confidence            999999763

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-38  Score=257.89  Aligned_cols=290  Identities=18%  Similarity=0.309  Sum_probs=252.1

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      .+.|.||..+|+.+-| .|+-.+.|+++.|.++++||+++++                                      
T Consensus       101 ~~~l~g~r~~vt~v~~-hp~~~~v~~as~d~tikv~D~~tg~--------------------------------------  141 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIF-HPSEALVVSASEDATIKVFDTETGE--------------------------------------  141 (406)
T ss_pred             hhhhhccccceeeeee-ccCceEEEEecCCceEEEEEccchh--------------------------------------
Confidence            5567778888888888 8888888888888888888877762                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                ..+.|+||++.|..++|+..|++|++++.|-.+++||.
T Consensus       142 ------------------------------------------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  142 ------------------------------------------LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             ------------------------------------------hhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence                                                      34467899999999999999999999999999999998


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      .+.. ........|...|.++.|- |.+.++++++.|.+|+.|++.++-++.++..+.  .-+..+..+.||.++++++.
T Consensus       180 ~~~~-~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~--ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  180 DTFF-RCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS--EWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             HHHH-HHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCch--HhEEEEEecCCeeEEEecCC
Confidence            7642 2233456678889999999 557999999999999999999999999999887  57999999999999999999


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC---------------CCEEEEEecCCeEEEEe
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN---------------GKILAASAVDGMIHMFD  321 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~v~d  321 (458)
                      +.             ++++|-+.++++...+.  +|.-+|.|++|.|.               +.++++++.|++|++||
T Consensus       256 dq-------------tl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  256 DQ-------------TLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             Cc-------------eEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            95             99999999988877765  56667999999763               25899999999999999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL  401 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  401 (458)
                      +.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||+++.+...         ..+.+...++++.|+.+..++
T Consensus       321 v~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk---------~~~ah~hfvt~lDfh~~~p~V  391 (406)
T KOG0295|consen  321 VSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK---------TLEAHEHFVTSLDFHKTAPYV  391 (406)
T ss_pred             ccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee---------ccCCCcceeEEEecCCCCceE
Confidence            99999999999999999999999999999999999999999999875433         223678889999999999999


Q ss_pred             EEEeCCccEEEEEc
Q 012699          402 LVTSGSVRAPIYQV  415 (458)
Q Consensus       402 ~~~~~~~~i~i~~~  415 (458)
                      ++|+-|..+++|.-
T Consensus       392 vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  392 VTGSVDQTVKVWEC  405 (406)
T ss_pred             Eeccccceeeeeec
Confidence            99999999999963

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.2e-39  Score=267.16  Aligned_cols=248  Identities=19%  Similarity=0.314  Sum_probs=217.4

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      ..++.|..+|+++.|++++.+++||+.+|.|++|+..-....  .....+...|.+++|+| ++..+++++.||+|+|||
T Consensus       132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk--~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK--IIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH--HhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence            346789999999999999999999999999999987544322  12223447899999994 778899999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      ....+....+..+.  -.|.++.|+|...++++++.|.             .|++||.+++.++..+  ..|...|..+.
T Consensus       209 f~~~kee~vL~GHg--wdVksvdWHP~kgLiasgskDn-------------lVKlWDprSg~cl~tl--h~HKntVl~~~  271 (464)
T KOG0284|consen  209 FRMPKEERVLRGHG--WDVKSVDWHPTKGLIASGSKDN-------------LVKLWDPRSGSCLATL--HGHKNTVLAVK  271 (464)
T ss_pred             ccCCchhheeccCC--CCcceeccCCccceeEEccCCc-------------eeEeecCCCcchhhhh--hhccceEEEEE
Confidence            99888877776665  6799999999999999999995             9999999999999876  47888999999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      |+|++++|++++.|..+++||+++.+.++++++|...++++.|+| ...+|.+|+.||.|..|.+.....        ..
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--------~~  343 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--------LG  343 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--------cc
Confidence            999999999999999999999999999999999999999999999 566899999999999999983222        23


Q ss_pred             cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      ..+..|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus       344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            3456789999999999999999999999999999764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-37  Score=252.88  Aligned_cols=299  Identities=16%  Similarity=0.321  Sum_probs=260.2

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..+.+.||...|.|+++ .|.+++++||+.|++++|||+.+++                                     
T Consensus       143 l~rVi~gHlgWVr~vav-dP~n~wf~tgs~DrtikIwDlatg~-------------------------------------  184 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAV-DPGNEWFATGSADRTIKIWDLATGQ-------------------------------------  184 (460)
T ss_pred             ehhhhhhccceEEEEee-CCCceeEEecCCCceeEEEEcccCe-------------------------------------
Confidence            46789999999999999 9999999999999999999988772                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                                                                 +..++.||-..|..+++|+-..||++++.|+.|+.||
T Consensus       185 -------------------------------------------LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  185 -------------------------------------------LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             -------------------------------------------EEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence                                                       3446779999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      ++..+.+.  ....|-+.|.+++.+ |.-+.|++|+.|.++++||+++...+..+..|.  .+|..+.+.|....+++++
T Consensus       222 Le~nkvIR--~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  222 LEYNKVIR--HYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             chhhhhHH--HhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCC--CcceeEEeecCCCceEEec
Confidence            99887654  345566899999999 667889999999999999999999999998877  7899999999999999999


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD  335 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  335 (458)
                      .|             ++|++||++.++....+.  .|...+.+++.+|....|++++.| .|+-|++..+..+..+.+|.
T Consensus       297 ~D-------------~tvrlWDl~agkt~~tlt--~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~  360 (460)
T KOG0285|consen  297 HD-------------STVRLWDLRAGKTMITLT--HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN  360 (460)
T ss_pred             CC-------------ceEEEeeeccCceeEeee--cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc
Confidence            99             499999999999888775  677889999999999999998877 59999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       336 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ..|++++.+.|+ ++++|++.|.+.+||.+++-........ ........+..|.+.+|...|..|+++..|.+|++|.-
T Consensus       361 ~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  361 AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             ceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccc-ccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            999999998887 8889999999999999986443322111 11222345567899999999999999999999999987


Q ss_pred             cCC
Q 012699          416 RGH  418 (458)
Q Consensus       416 ~~~  418 (458)
                      +..
T Consensus       439 De~  441 (460)
T KOG0285|consen  439 DEH  441 (460)
T ss_pred             ccc
Confidence            654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.4e-36  Score=300.63  Aligned_cols=293  Identities=14%  Similarity=0.281  Sum_probs=237.5

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC----C-CccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP----A-SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..|.+.|.+++|+|++++||+|+.|++|+||++.....    . .......+...+.+++|+|..+.+|++++.||+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            456999999999999999999999999999999754211    0 01112234567899999977788999999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      +||+.+++.+..+..+.  ..|.+++|+| ++..+++++.|             |.|++||++++.....+..   ...+
T Consensus       559 lWd~~~~~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~---~~~v  620 (793)
T PLN00181        559 VWDVARSQLVTEMKEHE--KRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKT---KANI  620 (793)
T ss_pred             EEECCCCeEEEEecCCC--CCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEec---CCCe
Confidence            99999998888777655  6899999997 67899999988             5999999999888877752   2468


Q ss_pred             EEEEEc-cCCCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          297 TSLCFN-HNGKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       297 ~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      .++.|+ +++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|++|++||+.......   
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~---  696 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI---  696 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc---
Confidence            999995 579999999999999999998765 567788999999999996 67799999999999999997532100   


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc-------------cCCCCCcEEEEEECCCCC
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR-------------TLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~  441 (458)
                      ..........|...+..++|+|++++|++|+.|+.+++|+.........             ...|...|.+++|+|++.
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~  776 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS  776 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence            0001112335667788999999999999999999999999765432211             123567899999999999


Q ss_pred             eEEEecCCCcEEEEeC
Q 012699          442 MFLTGSADHSVQVMSL  457 (458)
Q Consensus       442 ~l~s~~~dg~v~iw~l  457 (458)
                      .|++|+.||.|+||++
T Consensus       777 ~lva~~~dG~I~i~~~  792 (793)
T PLN00181        777 TLVAANSTGNIKILEM  792 (793)
T ss_pred             eEEEecCCCcEEEEec
Confidence            9999999999999997

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2e-37  Score=241.84  Aligned_cols=289  Identities=18%  Similarity=0.300  Sum_probs=250.2

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++++|+++............|+..|-.++|+|+...++++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56789999999999999999999999999999999988866655666677889999999999999999999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      ++.+++...+....   .-..+.|+|++.+++.+..+.             .|.+.|.++.+.....++   ...++.++
T Consensus        94 ~r~~k~~~~i~~~~---eni~i~wsp~g~~~~~~~kdD-------------~it~id~r~~~~~~~~~~---~~e~ne~~  154 (313)
T KOG1407|consen   94 IRSGKCTARIETKG---ENINITWSPDGEYIAVGNKDD-------------RITFIDARTYKIVNEEQF---KFEVNEIS  154 (313)
T ss_pred             eccCcEEEEeeccC---cceEEEEcCCCCEEEEecCcc-------------cEEEEEecccceeehhcc---cceeeeee
Confidence            99999998877664   345689999999999999986             999999998887776543   34578899


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      |+.++.+++.....|.|.|.....-+++..+++|.....||.|+|+|++||+|+.|..+.+||+...-..       +  
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-------R--  225 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-------R--  225 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-------e--
Confidence            9988888888777899999999999999999999999999999999999999999999999999864222       2  


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC---------Cc
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD---------HS  451 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~  451 (458)
                      ....+.-+|..+.||.||++||+|++|..|-|-+++++.++.. ..+.++...++|+|...+||-++.|         |.
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~  304 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGT  304 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE-eeccCCceeEEecCCCceeeEEecCCCCccccccce
Confidence            1224667899999999999999999999999999999866544 3578899999999999999987654         67


Q ss_pred             EEEEeCC
Q 012699          452 VQVMSLS  458 (458)
Q Consensus       452 v~iw~l~  458 (458)
                      |++|-++
T Consensus       305 vKiFG~~  311 (313)
T KOG1407|consen  305 VKIFGLS  311 (313)
T ss_pred             eEEecCC
Confidence            8888653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=278.00  Aligned_cols=294  Identities=21%  Similarity=0.395  Sum_probs=250.9

Q ss_pred             eeeeccC-CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          140 LETFLGH-TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       140 ~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ...+.+| ...|.++.|+|+|+++++++.|+.+++|+..............|...|..++|+ +++.++++++.|++|++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs-~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFS-PDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEEC-CCCcEEEEecCCceEEE
Confidence            4455454 888999999999999999999999999999666511111225677899999999 78889999999999999


Q ss_pred             EEc-CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          219 WNV-DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      ||+ ..+..+.++..|.  ..|++++|+|+++.+++++.|             ++|++||++++++...+.  .|...|+
T Consensus       230 wd~~~~~~~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~--~hs~~is  292 (456)
T KOG0266|consen  230 WDLKDDGRNLKTLKGHS--TYVTSVAFSPDGNLLVSGSDD-------------GTVRIWDVRTGECVRKLK--GHSDGIS  292 (456)
T ss_pred             eeccCCCeEEEEecCCC--CceEEEEecCCCCEEEEecCC-------------CcEEEEeccCCeEEEeee--ccCCceE
Confidence            999 5557888888666  789999999999999999998             599999999999988875  7888999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCC--eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSA--ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      +++|++++.+|++++.|+.|++||+.++.  ++..+..+..+  ++++.|+|+++++++++.|+.+++||+.....+...
T Consensus       293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            99999999999999999999999999998  56777776665  999999999999999999999999999976554432


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEEEECCCCCeEEEec--CCC
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTVDWHPTLPMFLTGS--ADH  450 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~dg  450 (458)
                      .....      ....+.+...++.++++++|+.|+.|++|++.+...+..+.+| ...+..++|+|..+++++++  .|+
T Consensus       373 ~~~~~------~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~  446 (456)
T KOG0266|consen  373 TGHSN------LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG  446 (456)
T ss_pred             cccCC------cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence            21111      0134556666889999999999999999999998888888999 89999999999999999998  789


Q ss_pred             cEEEEeC
Q 012699          451 SVQVMSL  457 (458)
Q Consensus       451 ~v~iw~l  457 (458)
                      .+++|..
T Consensus       447 ~~~~w~~  453 (456)
T KOG0266|consen  447 LIRLWKY  453 (456)
T ss_pred             eEEEecC
Confidence            9999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-37  Score=242.34  Aligned_cols=290  Identities=17%  Similarity=0.238  Sum_probs=239.0

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      .++||..+++.+.++.+|.+|++|+.|.+..+|--.+++.+.  ....|.+.|+++..+ .+...+++|+.|.++++||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--ty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--TYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee--eecCCCceEEEEEec-CCcceeeeccccceeEEEEc
Confidence            467999999999999999999999999999999876776543  455688999999998 78899999999999999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCCC
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDPP  294 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~~  294 (458)
                      ++|+++..++..   .+|..+.|++++++++....+...        ..+.|.++|++.       .++...+.  .+..
T Consensus        82 ~tGk~la~~k~~---~~Vk~~~F~~~gn~~l~~tD~~mg--------~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~s  148 (327)
T KOG0643|consen   82 ETGKQLATWKTN---SPVKRVDFSFGGNLILASTDKQMG--------YTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDS  148 (327)
T ss_pred             CCCcEEEEeecC---CeeEEEeeccCCcEEEEEehhhcC--------cceEEEEEEccCChhhhcccCceEEec--CCcc
Confidence            999999998877   589999999999988887765421        226899999983       33444443  4457


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      .++.+-|.|-+++|++|..||.|..||+++++ .+..-+.|...|+.++++||..++++++.|.+-++||+.+.......
T Consensus       149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence            79999999999999999999999999999974 45666789999999999999999999999999999999976433321


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE--------------EEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA--------------PIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i--------------~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                                ....++++.+++|-...++.|++....              ++|++-..+++.+..+|-++|++++|||+
T Consensus       229 ----------~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd  298 (327)
T KOG0643|consen  229 ----------TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD  298 (327)
T ss_pred             ----------eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence                      234568999999988777776654322              23333334455566689999999999999


Q ss_pred             CCeEEEecCCCcEEEEeC
Q 012699          440 LPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       440 ~~~l~s~~~dg~v~iw~l  457 (458)
                      |+..++|++||.||+..+
T Consensus       299 GksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  299 GKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             CcccccCCCCceEEEEEe
Confidence            999999999999999765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.9e-36  Score=238.37  Aligned_cols=292  Identities=16%  Similarity=0.262  Sum_probs=246.4

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      +.+-.+.||...|..+.| +|+|.++|||+.|..|.+|+.....                        +           
T Consensus        38 ap~m~l~gh~geI~~~~F-~P~gs~~aSgG~Dr~I~LWnv~gdc------------------------e-----------   81 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKF-HPDGSCFASGGSDRAIVLWNVYGDC------------------------E-----------   81 (338)
T ss_pred             chhhhcCCCcceEEEEEE-CCCCCeEeecCCcceEEEEeccccc------------------------c-----------
Confidence            345678899999999999 9999999999999999999854320                        0           


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                                  -...+++|.++|..+.|.+|++.|++++.|.+++.|
T Consensus        82 --------------------------------------------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   82 --------------------------------------------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             --------------------------------------------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence                                                        122456999999999999999999999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      |+++++...  ....|..-++.+.-...+..++.+++.||++++||+++...++++...   .+++++.|...+..+.++
T Consensus       118 D~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  118 DAETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---YQLTAVGFKDTSDQVISG  192 (338)
T ss_pred             ecccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---eeEEEEEecccccceeec
Confidence            999998765  334466677777755456678889999999999999999888777554   479999999999999999


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC----Cceeee
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA----GLQITG  330 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~  330 (458)
                      +-|             +.|++||++.+.....+.  +|...|+.+..+|+|.++.+-+.|.++++||++.    .+++..
T Consensus       193 gId-------------n~ikvWd~r~~d~~~~ls--Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i  257 (338)
T KOG0265|consen  193 GID-------------NDIKVWDLRKNDGLYTLS--GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI  257 (338)
T ss_pred             ccc-------------CceeeeccccCcceEEee--cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE
Confidence            999             499999999888887764  8889999999999999999999999999999975    244666


Q ss_pred             eeCCC----CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          331 WPAHD----SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       331 ~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      +.+|.    .....++|+|+++.+.+|+.|..+++||....+.+.         ...+|...|..++|+|...+|.+++.
T Consensus       258 f~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly---------klpGh~gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  258 FQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY---------KLPGHYGSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             eecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE---------EcCCcceeEEEeeecCCCcEEEEecc
Confidence            76654    345678999999999999999999999998654433         33478899999999999999999999


Q ss_pred             CccEEEEEc
Q 012699          407 SVRAPIYQV  415 (458)
Q Consensus       407 ~~~i~i~~~  415 (458)
                      |.+|++=.+
T Consensus       329 dk~i~lgei  337 (338)
T KOG0265|consen  329 DKTIYLGEI  337 (338)
T ss_pred             CceeEeecc
Confidence            999987543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=252.55  Aligned_cols=297  Identities=15%  Similarity=0.269  Sum_probs=243.0

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      +..+.|..|.+.|.-+.| |++|+||||++.|.+..||.+....                                    
T Consensus       215 qt~qil~~htdEVWfl~F-S~nGkyLAsaSkD~Taiiw~v~~d~------------------------------------  257 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQF-SHNGKYLASASKDSTAIIWIVVYDV------------------------------------  257 (519)
T ss_pred             hhhhhHhhCCCcEEEEEE-cCCCeeEeeccCCceEEEEEEecCc------------------------------------
Confidence            346788899999999999 9999999999999999999754330                                    


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                               .++..+++.+|..+|..+.||||.++|++|+.|..+++|
T Consensus       258 -----------------------------------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  258 -----------------------------------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             -----------------------------------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence                                                     022667889999999999999999999999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      |+.++......... ++..+.+++|. |++..+++|+.|+.+..||++.... ...+.... ..|.+++..+||+.+++.
T Consensus       297 Dv~tgd~~~~y~~~-~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~-~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSG-LGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRD-PKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             cCCcchhhhhcccC-cCCCcceeEEc-cCCceeEecCCCCcEEEecCCcchh-hccccccc-ceeEEEEEcCCCcEEEEE
Confidence            99999876432222 45789999999 7888999999999999999986542 22222221 569999999999999999


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      ..|.             .|++++.++......+.   ...+|+++++|.+++++++.-.+..+++||++..+.+..+.+|
T Consensus       373 ~~d~-------------~i~l~~~e~~~dr~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh  436 (519)
T KOG0293|consen  373 TVDK-------------KIRLYNREARVDRGLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH  436 (519)
T ss_pred             eccc-------------ceeeechhhhhhhcccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence            8885             99999998766655443   3357999999999999999999999999999999999999999


Q ss_pred             CCCe--EEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccE
Q 012699          335 DSAI--SSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRA  410 (458)
Q Consensus       335 ~~~v--~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i  410 (458)
                      ...-  ..-+|-- +..++++||.|+.|+||+..+++.+..         ..+|...+++++|+|.. .++|+++.||+|
T Consensus       437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~---------LsGHs~~vNcVswNP~~p~m~ASasDDgtI  507 (519)
T KOG0293|consen  437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV---------LSGHSKTVNCVSWNPADPEMFASASDDGTI  507 (519)
T ss_pred             cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe---------ecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence            7643  3334543 557999999999999999998765443         34688899999999954 678899999999


Q ss_pred             EEEEccCC
Q 012699          411 PIYQVRGH  418 (458)
Q Consensus       411 ~i~~~~~~  418 (458)
                      +||.....
T Consensus       508 RIWg~~~~  515 (519)
T KOG0293|consen  508 RIWGPSDN  515 (519)
T ss_pred             EEecCCcc
Confidence            99987543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.5e-36  Score=259.78  Aligned_cols=286  Identities=12%  Similarity=0.168  Sum_probs=246.9

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      +++..|+..|.++.| .|...+++.+-..|.+.||+++++.....+.-    .+-...+..+-.+..++++|+.|..|++
T Consensus         7 rk~~~rSdRVKsVd~-HPtePw~la~LynG~V~IWnyetqtmVksfeV----~~~PvRa~kfiaRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDF-HPTEPWILAALYNGDVQIWNYETQTMVKSFEV----SEVPVRAAKFIARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hHhhccCCceeeeec-CCCCceEEEeeecCeeEEEecccceeeeeeee----cccchhhheeeeccceEEEecCCceEEE
Confidence            456679999999999 99999999999999999999999976633321    1222234556668899999999999999


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                      ++.....                                  .++.|..|.+.|+|++.+|...+++|+|.|-+|++||.+
T Consensus        82 fnynt~e----------------------------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we  127 (794)
T KOG0276|consen   82 FNYNTGE----------------------------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE  127 (794)
T ss_pred             Eecccce----------------------------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence            9987744                                  788999999999999999999999999999999999997


Q ss_pred             CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC--CeEEEee
Q 012699          178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE--PIFVSAA  255 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~  255 (458)
                      ..=. .......|.+-|.+++|+|.+.+.+++++-|++|++|.+.+..+..++..|.  ..|.++.+-+.+  +++++++
T Consensus       128 ~~wa-~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsga  204 (794)
T KOG0276|consen  128 NEWA-CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGA  204 (794)
T ss_pred             Ccee-eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecC
Confidence            6432 2345567888999999999999999999999999999999999999888766  789999998755  6999999


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD  335 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  335 (458)
                      .|.             .+++||.++..+++++.  +|...|..+.|+|.-..+++|++||+++||+..+-+...++.-.-
T Consensus       205 DD~-------------tiKvWDyQtk~CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl  269 (794)
T KOG0276|consen  205 DDL-------------TIKVWDYQTKSCVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL  269 (794)
T ss_pred             CCc-------------eEEEeecchHHHHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC
Confidence            885             99999999999998874  788889999999999999999999999999999888888888778


Q ss_pred             CCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          336 SAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       336 ~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                      +.++|++-.+.+..++.|.++|.|.
T Consensus       270 eRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  270 ERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             ceEEEEeecCCCCeEEEeccCCcEE
Confidence            8999999999888888888777654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=262.42  Aligned_cols=287  Identities=17%  Similarity=0.244  Sum_probs=225.9

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecC----------CCeEEEEEcCCCcEEEE
Q 012699          151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECK----------SDRLLLIGTADGGIKAW  219 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~~dg~i~~w  219 (458)
                      .++.|+|....|.+...|..++|||++.-.... ......|...|+.+.--|-          ....+++++.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            467899888899999999999999998765432 2234556677777765431          12358999999999999


Q ss_pred             EcCCCceeeecc-----------------------------------CCCCCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699          220 NVDAKRVVCDLN-----------------------------------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN  264 (458)
Q Consensus       220 d~~~~~~~~~~~-----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  264 (458)
                      |++.+..-..+.                                   .-+....+.+++++|++++|++|...       
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-------  480 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-------  480 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc-------
Confidence            997632111100                                   00011348899999999999999887       


Q ss_pred             eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCC----
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH---NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDS----  336 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~----  336 (458)
                            |.+++|++...+....+  +.|...|.|+.|+.   ..++|++++.|..|.|||... -.++.++.+|..    
T Consensus       481 ------GnlrVy~Lq~l~~~~~~--eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs  552 (1080)
T KOG1408|consen  481 ------GNLRVYDLQELEYTCFM--EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS  552 (1080)
T ss_pred             ------CceEEEEehhhhhhhhe--ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence                  69999999987766655  57889999999986   357899999999999999753 223333333333    


Q ss_pred             ---------------------------------------------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          337 ---------------------------------------------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       337 ---------------------------------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                                                                   .+..++..|..+++++++.|..|+|||+.++++..
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence                                                         34555666667888999999999999999887654


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS  451 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  451 (458)
                            .+.....+.+....+...|.|-||++.+.|.++.++|..+++.+.+..||...|+.+.|.+|.+.|++.+.||+
T Consensus       633 ------~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  633 ------SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             ------eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence                  44455677788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCC
Q 012699          452 VQVMSLS  458 (458)
Q Consensus       452 v~iw~l~  458 (458)
                      |.||.++
T Consensus       707 IFvW~lp  713 (1080)
T KOG1408|consen  707 IFVWKLP  713 (1080)
T ss_pred             EEEEECc
Confidence            9999874

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-36  Score=230.39  Aligned_cols=287  Identities=14%  Similarity=0.233  Sum_probs=240.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ..+.+..|.++|..+.|+-||+|.++|+.|.+|++|+...+.++.  ....|+.+|..++.+ .++..+++++.|..+.+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG~EVlD~~~s-~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHGHEVLDAALS-SDNSKFASCGGDKAVQV   85 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee--eecCCCceeeecccc-ccccccccCCCCceEEE
Confidence            556788999999999999999999999999999999998887764  455688899999988 77888999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||+++|+..+.+..|.  ..|..+.|+.+...+++++.|.             .+++||.++....+...+......|.+
T Consensus        86 wDV~TGkv~Rr~rgH~--aqVNtV~fNeesSVv~SgsfD~-------------s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHL--AQVNTVRFNEESSVVASGSFDS-------------SVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             EEcccCeeeeeccccc--ceeeEEEecCcceEEEeccccc-------------eeEEEEcccCCCCccchhhhhcCceeE
Confidence            9999999999999887  7899999999999999999995             999999998666555555667778998


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +..+  +..|++|+.||+++.||++.|+....+-  ..+|+++.|+++++..+.++.|+++++.|-.+++.+..      
T Consensus       151 i~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s------  220 (307)
T KOG0316|consen  151 IDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS------  220 (307)
T ss_pred             EEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH------
Confidence            8886  5679999999999999999998776654  45899999999999999999999999999988653321      


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCc-EEEEEECCCCCeEEEecCCCcEEEE
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA-ITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                       .........-...+++.....+++|++||.+++||+.....+..+..|... |.+++++|.-..|+++... .+..|
T Consensus       221 -YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  221 -YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW  296 (307)
T ss_pred             -hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence             111112223345678888899999999999999999988777777777776 8999999998877777644 34444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.2e-35  Score=229.23  Aligned_cols=299  Identities=17%  Similarity=0.248  Sum_probs=238.7

Q ss_pred             HhhccccCCCcceeeeeeccCC-CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           15 AQLSRLKNNSETIKYANIGQTK-NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~-~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      ..++.+++|+..+-.+++ +|- |.+||||+.|+.++||+...+..                                  
T Consensus         5 ~~~~~~~gh~~r~W~~aw-hp~~g~ilAscg~Dk~vriw~~~~~~s----------------------------------   49 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAW-HPGKGVILASCGTDKAVRIWSTSSGDS----------------------------------   49 (312)
T ss_pred             eeEEeecCCCCcEEEEEe-ccCCceEEEeecCCceEEEEecCCCCc----------------------------------
Confidence            356789999999999999 777 99999999999999998653300                                  


Q ss_pred             cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699           94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFSSSGNNIASASVDGTVR  172 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  172 (458)
                          |.                                       +...+ .+|+..|++++|+|.|++|++++.|.++.
T Consensus        50 ----~~---------------------------------------ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen   50 ----WT---------------------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             ----EE---------------------------------------EEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence                00                                       12222 37999999999999999999999999999


Q ss_pred             EEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc---eeeeccCCCCCCceeeeeecCCCC
Q 012699          173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR---VVCDLNTTDAFPSVLDLKCSPVEP  249 (458)
Q Consensus       173 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~  249 (458)
                      ||.-..++.........|..+|.+++|+ .++++|++++.|..+-+|.+..+.   +...++.|.  ..|..+.|+|...
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht--qDVK~V~WHPt~d  163 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT--QDVKHVIWHPTED  163 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc--ccccEEEEcCCcc
Confidence            9987766655555666788999999999 899999999999999999998544   344454444  6799999999999


Q ss_pred             eEEEeecccCCCCcceeeccceeEEEEECC-CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee
Q 012699          250 IFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  328 (458)
                      +|++++.|.             +|++|+-. ...-....++.+|...|.+++|+|.|..|++++.|++++||-+.+.-. 
T Consensus       164 lL~S~SYDn-------------TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-  229 (312)
T KOG0645|consen  164 LLFSCSYDN-------------TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS-  229 (312)
T ss_pred             eeEEeccCC-------------eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc-
Confidence            999999995             99999876 444444445568888999999999999999999999999998763321 


Q ss_pred             eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccC-CCEEEEEeC
Q 012699          329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVN-GRRLLVTSG  406 (458)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~  406 (458)
                         ..|..++..+.|. ++ .|++++.|+.|++|.-... ..+.+..   .......|...|++++|.|. ..+|++++.
T Consensus       230 ---~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l---~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D  301 (312)
T KOG0645|consen  230 ---GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNL---LAKKEGAHEVDVNSVQWNPKVSNRLASGGD  301 (312)
T ss_pred             ---hhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHH---HHhhhcccccccceEEEcCCCCCceeecCC
Confidence               2467889999998 44 8999999999999987642 1111110   11123457778999999995 789999999


Q ss_pred             CccEEEEEcc
Q 012699          407 SVRAPIYQVR  416 (458)
Q Consensus       407 ~~~i~i~~~~  416 (458)
                      ||.+++|.+.
T Consensus       302 DG~v~~W~l~  311 (312)
T KOG0645|consen  302 DGIVNFWELE  311 (312)
T ss_pred             CceEEEEEec
Confidence            9999999874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.7e-37  Score=248.56  Aligned_cols=250  Identities=20%  Similarity=0.340  Sum_probs=206.1

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      +++.|.||++.|.|+.|.  .+.|++|+.|.+|++||+++++++.  ..+.|...|..+.|+   +.++++++.|.++.+
T Consensus       229 c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--tlihHceaVLhlrf~---ng~mvtcSkDrsiaV  301 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAV  301 (499)
T ss_pred             HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--HHhhhcceeEEEEEe---CCEEEEecCCceeEE
Confidence            566788999999999994  5599999999999999999999865  456677899999997   678999999999999


Q ss_pred             EEcCCCcee---eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          219 WNVDAKRVV---CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       219 wd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      ||+.+...+   ..+..+  ...|..+.|+.  +++++++.|+             +|++|++.+.+.+.++  .+|...
T Consensus       302 Wdm~sps~it~rrVLvGH--rAaVNvVdfd~--kyIVsASgDR-------------TikvW~~st~efvRtl--~gHkRG  362 (499)
T KOG0281|consen  302 WDMASPTDITLRRVLVGH--RAAVNVVDFDD--KYIVSASGDR-------------TIKVWSTSTCEFVRTL--NGHKRG  362 (499)
T ss_pred             EeccCchHHHHHHHHhhh--hhheeeecccc--ceEEEecCCc-------------eEEEEeccceeeehhh--hccccc
Confidence            999876532   223333  36788887764  4999999986             9999999999998876  488888


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      |.|+.+  .++++++|+.|.+|++||+..|.+++.+++|+.-|.++.|.  .+.+++|+.||+|++||+.....+.....
T Consensus       363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~  438 (499)
T KOG0281|consen  363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPAS  438 (499)
T ss_pred             ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccccc
Confidence            988887  48899999999999999999999999999999999999995  56899999999999999987655433222


Q ss_pred             CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                      ..-+.....+.+.|..+.|  |...+++.+.|.+|.|||+.....
T Consensus       439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence            2223344456777888888  566888999999999999977643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.6e-37  Score=258.23  Aligned_cols=293  Identities=18%  Similarity=0.303  Sum_probs=246.6

Q ss_pred             HHhhccccCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699           14 EAQLSRLKNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGN   92 (458)
Q Consensus        14 ~~~~~~l~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (458)
                      ...++.+.||+..|+++.| .| .+.+|+|++.|+.++||++....                                  
T Consensus       204 kk~~~~~~gH~kgvsai~~-fp~~~hLlLS~gmD~~vklW~vy~~~----------------------------------  248 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQW-FPKKGHLLLSGGMDGLVKLWNVYDDR----------------------------------  248 (503)
T ss_pred             HhheeeccCCccccchhhh-ccceeeEEEecCCCceEEEEEEecCc----------------------------------
Confidence            3467899999999999999 77 88899999999999998754320                                  


Q ss_pred             CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699           93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVR  172 (458)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  172 (458)
                                                                   .+++++.||..+|..++|+++|..++|++.|+.++
T Consensus       249 ---------------------------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  249 ---------------------------------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             ---------------------------------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence                                                         17788999999999999999999999999999999


Q ss_pred             EEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699          173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       173 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      +||+++++...   .......+.++.|+|.+.+.+++|+.|+.|+.||+++++.++.+..+-  +.+..+.|-+++..++
T Consensus       284 lwDtETG~~~~---~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL--g~i~~i~F~~~g~rFi  358 (503)
T KOG0282|consen  284 LWDTETGQVLS---RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL--GAILDITFVDEGRRFI  358 (503)
T ss_pred             eeccccceEEE---EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh--hheeeeEEccCCceEe
Confidence            99999998764   344567789999998777999999999999999999999888877665  7899999999999999


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC---ceee
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG---LQIT  329 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~  329 (458)
                      +++.+.             .+++|+.+...+++.+. ....-...++..+|+++++++-+.|..|.+|.+...   ....
T Consensus       359 ssSDdk-------------s~riWe~~~~v~ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  359 SSSDDK-------------SVRIWENRIPVPIKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             eeccCc-------------cEEEEEcCCCccchhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence            999984             99999999877766553 222334788999999999999999999999997542   2234


Q ss_pred             eeeCCC--CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeC
Q 012699          330 GWPAHD--SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSG  406 (458)
Q Consensus       330 ~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~  406 (458)
                      .+.+|.  +.-..+.|||||++|++|+.||.+.+||.++.+         .+.....+...+..+.|+|.. ..+|+++.
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------l~~~lkah~~~ci~v~wHP~e~Skvat~~w  495 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------LVSKLKAHDQPCIGVDWHPVEPSKVATCGW  495 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------hhhccccCCcceEEEEecCCCcceeEeccc
Confidence            566775  455678999999999999999999999999654         333445677889999999965 67888999


Q ss_pred             CccEEEEE
Q 012699          407 SVRAPIYQ  414 (458)
Q Consensus       407 ~~~i~i~~  414 (458)
                      +|.|++|+
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-34  Score=252.88  Aligned_cols=288  Identities=23%  Similarity=0.397  Sum_probs=243.1

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +++|++|..+|++++| ++++++|++++.|+.+.+|+...+.                                      
T Consensus         2 ~~~~~~h~~~i~~~~~-~~~~~~l~~~~~~g~i~i~~~~~~~--------------------------------------   42 (289)
T cd00200           2 RRTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGE--------------------------------------   42 (289)
T ss_pred             chHhcccCCCEEEEEE-cCCCCEEEEeecCcEEEEEEeeCCC--------------------------------------
Confidence            4678899999999999 9999999999999999999876441                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                ....+.+|...+..+.|+|++++|++++.||.+++|++
T Consensus        43 ------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200          43 ------------------------------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             ------------------------------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence                                                      11234568888999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      .+++...  ....+...+.++.|+ +++.++++++.+|.+.+||+.+++....+..+.  ..+.++.++|++.+++++..
T Consensus        81 ~~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~  155 (289)
T cd00200          81 ETGECVR--TLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSSQ  155 (289)
T ss_pred             CcccceE--EEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEcC
Confidence            8765433  233455689999999 557788888889999999999888877776443  67999999999888888775


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                      +             |.+++||+++++....+.  .+...+.++.|+|+++.+++++.++.|++||+++++.+..+..|..
T Consensus       156 ~-------------~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~  220 (289)
T cd00200         156 D-------------GTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN  220 (289)
T ss_pred             C-------------CcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence            5             599999999888877775  5666899999999999999999999999999999999888888999


Q ss_pred             CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699          337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~  414 (458)
                      .+.+++|+|++.++++++.|+.+++||+.+.......         ..+...+.+++|+|++++|++++.|+.+++|+
T Consensus       221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL---------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc---------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999888888888999999999865433221         14566799999999999999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.9e-35  Score=269.35  Aligned_cols=293  Identities=21%  Similarity=0.322  Sum_probs=246.6

Q ss_pred             ccccCC-CcceeeeeeccCCCceeeeeecCcceEEecccccc--cc-ccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           18 SRLKNN-SETIKYANIGQTKNSTLASGVNEESLLLSTNSSEA--CA-TTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        18 ~~l~~h-~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      +.+.+| ...|.|+.| +++|+++++++.|+.+++|+.....  .. ....|...+.+     ++++.+++++++++.|+
T Consensus       152 ~~~~~~~~~sv~~~~f-s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~-----~~fs~d~~~l~s~s~D~  225 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDF-SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSD-----VAFSPDGSYLLSGSDDK  225 (456)
T ss_pred             eeecccccCceEEEEE-cCCCCeEEEccCCCcEEEeecccccchhhccccccccceee-----eEECCCCcEEEEecCCc
Confidence            344444 888999999 9999999999999999999996665  33 23344445555     77777888999999999


Q ss_pred             cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699           94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI  173 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  173 (458)
                      ++++|++....                                 ..++++++|...|++++|+|+++++++|+.|++|+|
T Consensus       226 tiriwd~~~~~---------------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvri  272 (456)
T KOG0266|consen  226 TLRIWDLKDDG---------------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRI  272 (456)
T ss_pred             eEEEeeccCCC---------------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEE
Confidence            99999983321                                 177889999999999999999999999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeE
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIF  251 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (458)
                      ||++++++..  ....|...|.+++|+ +++++|++++.|+.|++||+.++.  +...+.......++..+.|+|++.++
T Consensus       273 Wd~~~~~~~~--~l~~hs~~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l  349 (456)
T KOG0266|consen  273 WDVRTGECVR--KLKGHSDGISGLAFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL  349 (456)
T ss_pred             EeccCCeEEE--eeeccCCceEEEEEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence            9999977654  455678899999999 889999999999999999999999  55666655542268999999999999


Q ss_pred             EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC-CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee
Q 012699          252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP-PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG  330 (458)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  330 (458)
                      +++..++             .+++||+..+.....+...... ..+.+...++.+.++++|+.|+.|++||+.++..+..
T Consensus       350 l~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~  416 (456)
T KOG0266|consen  350 LSASLDR-------------TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR  416 (456)
T ss_pred             EEecCCC-------------eEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence            9999984             9999999998888877533221 1344556678999999999999999999999999999


Q ss_pred             eeCC-CCCeEEEEEcCCCCEEEEec--CCCeEEEEecc
Q 012699          331 WPAH-DSAISSILFGPDETSIFSLG--SDGKIIEWSLQ  365 (458)
Q Consensus       331 ~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~  365 (458)
                      +.+| ...+..+.++|...++++++  .|+.+++|...
T Consensus       417 l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  417 LEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            9999 89999999999999999998  68999999754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.6e-35  Score=255.22  Aligned_cols=287  Identities=14%  Similarity=0.229  Sum_probs=249.6

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ..+.+..|+.+|.++.|+|....++++-.+|.|.||+.++..+...  ..-...+|.+..|- ...+.+++|+.|..|++
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks--feV~~~PvRa~kfi-aRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS--FEVSEVPVRAAKFI-ARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee--eeecccchhhheee-eccceEEEecCCceEEE
Confidence            4456677999999999999999999999999999999998877642  23346788999998 77899999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~  297 (458)
                      |+..+++.+..+..|.  ..+++++.+|..+++++++.|.             .|++||.+. +.+.++  +++|...|+
T Consensus        82 fnynt~ekV~~FeAH~--DyIR~iavHPt~P~vLtsSDDm-------------~iKlW~we~~wa~~qt--feGH~HyVM  144 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHS--DYIRSIAVHPTLPYVLTSSDDM-------------TIKLWDWENEWACEQT--FEGHEHYVM  144 (794)
T ss_pred             EecccceeeEEeeccc--cceeeeeecCCCCeEEecCCcc-------------EEEEeeccCceeeeeE--EcCcceEEE
Confidence            9999999999999887  5799999999999999999996             999999976 334444  468888999


Q ss_pred             EEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          298 SLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       298 ~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      +++|+| |.+.+++++.|++|+||.+.+..+..++.+|...|+|+.+-+  |..+|++|++|.++++||..+...     
T Consensus       145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-----  219 (794)
T KOG0276|consen  145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-----  219 (794)
T ss_pred             EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-----
Confidence            999999 578999999999999999999999999999999999999987  447999999999999999997643     


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                          ....++|...|..+.|+|.-..+++|++||+++||+..+-+....+.-....|++++-.+.++.++.|.++|.|.+
T Consensus       220 ----V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  220 ----VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ----HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence                2344578889999999999999999999999999999887555444445678999999999999999998887754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.9e-34  Score=281.09  Aligned_cols=302  Identities=13%  Similarity=0.210  Sum_probs=236.0

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      .+..|...|.+++| +++|++||+|+.|++++||+......           .           ..         .+   
T Consensus       478 ~~~~~~~~V~~i~f-s~dg~~latgg~D~~I~iwd~~~~~~-----------~-----------~~---------~~---  522 (793)
T PLN00181        478 DLLNSSNLVCAIGF-DRDGEFFATAGVNKKIKIFECESIIK-----------D-----------GR---------DI---  522 (793)
T ss_pred             cccCCCCcEEEEEE-CCCCCEEEEEeCCCEEEEEECCcccc-----------c-----------cc---------cc---
Confidence            35569999999999 99999999999999999998643200           0           00         00   


Q ss_pred             ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecC
Q 012699           99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~  177 (458)
                        ..                                    ....+. +...|.+++|+| ++.+|++++.||+|++||+.
T Consensus       523 --~~------------------------------------~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~  563 (793)
T PLN00181        523 --HY------------------------------------PVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA  563 (793)
T ss_pred             --cc------------------------------------ceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence              00                                    011122 345788999987 47899999999999999998


Q ss_pred             CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec-CCCCeEEEeec
Q 012699          178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS-PVEPIFVSAAA  256 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~  256 (458)
                      +++...  ....|...|.+++|+|.++.+|++|+.||.|++||+.++..+..+..+   ..+.++.|. +++..+++++.
T Consensus       564 ~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        564 RSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             CCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCCEEEEEeC
Confidence            776543  334577899999999778899999999999999999999888777643   468889985 56889999988


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC------Cceee
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA------GLQIT  329 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~------~~~~~  329 (458)
                      +             |.|++||+++.+ ....+  .+|...|.++.|. ++.+|++++.|+.|++||++.      ..++.
T Consensus       639 d-------------g~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~  702 (793)
T PLN00181        639 D-------------HKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH  702 (793)
T ss_pred             C-------------CeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence            8             599999998765 33333  4788889999997 678999999999999999974      35678


Q ss_pred             eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee-cCC-cc--cCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          330 GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR-NCS-RF--CDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~--~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      .+.+|...+.+++|+|++.+|++|+.|+.|++|+........... ... ..  .....+...|.+++|+|++..|++|+
T Consensus       703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence            899999999999999999999999999999999987553322110 000 00  01123456799999999999999999


Q ss_pred             CCccEEEEEc
Q 012699          406 GSVRAPIYQV  415 (458)
Q Consensus       406 ~~~~i~i~~~  415 (458)
                      .+|.|+||++
T Consensus       783 ~dG~I~i~~~  792 (793)
T PLN00181        783 STGNIKILEM  792 (793)
T ss_pred             CCCcEEEEec
Confidence            9999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.4e-36  Score=232.46  Aligned_cols=284  Identities=16%  Similarity=0.190  Sum_probs=244.8

Q ss_pred             eeccCCCCeEEEEeCC---CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          142 TFLGHTSPISCCRFSS---SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      +..||+.+|..++|+|   +|-+|++++.|+.-.+-+-+++..+.  ....|.+.|++...+ .+....++++.|-+-++
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--tfeghkgavw~~~l~-~na~~aasaaadftakv   85 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--TFEGHKGAVWSATLN-KNATRAASAAADFTAKV   85 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--eeeccCcceeeeecC-chhhhhhhhcccchhhh
Confidence            4579999999999986   78899999999998887777776654  455678899999988 77778899999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||.-+|..+..+...   .-|..++|+.+.+.+++++.+.             -+++||++..+.... .+.+|++.|..
T Consensus        86 w~a~tgdelhsf~hk---hivk~~af~~ds~~lltgg~ek-------------llrvfdln~p~App~-E~~ghtg~Ir~  148 (334)
T KOG0278|consen   86 WDAVTGDELHSFEHK---HIVKAVAFSQDSNYLLTGGQEK-------------LLRVFDLNRPKAPPK-EISGHTGGIRT  148 (334)
T ss_pred             hhhhhhhhhhhhhhh---heeeeEEecccchhhhccchHH-------------HhhhhhccCCCCCch-hhcCCCCccee
Confidence            999999988877644   4689999999999999999985             899999987654432 24689999999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +-|....+.|++.+.|++|++||.+++..++++.. ..+|+++..+++|++|.+ ...+.|.+||..+.+.+...     
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~-----  221 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSY-----  221 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEE-ecCceeEEeccccccceeec-----
Confidence            99999999999999999999999999999998874 678999999999976654 45678999999987554322     


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                           ..+..|.+..++|+...+++|++|..++.||..++..+..+ .+|.++|.|+.|+|+|...|+||+||+||+|..
T Consensus       222 -----k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  222 -----KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             -----cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence                 34456888999999999999999999999999999888875 699999999999999999999999999999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.1e-36  Score=240.62  Aligned_cols=290  Identities=17%  Similarity=0.247  Sum_probs=248.0

Q ss_pred             CCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeee----eccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           22 NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMG----SAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        22 ~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      |...-+.|..| ||||+||++||.||.+.+|++.++++...+...+    -.-+...+++.|+.+.+++++|+.||.|++
T Consensus       211 g~KSh~EcA~F-SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARF-SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheee-CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            45566999999 9999999999999999999999998774433222    122456778999999999999999999999


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                      |.+...+                                  +++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+
T Consensus       290 Wri~tG~----------------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl  335 (508)
T KOG0275|consen  290 WRIETGQ----------------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL  335 (508)
T ss_pred             EEEecch----------------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence            9998755                                  666665 89999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEee
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAA  255 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~  255 (458)
                      .++++..  ....|.+-|+...|. +++..+++++.||+|++|+..+.+++.+++......+|..+..-|.++ .++.+.
T Consensus       336 KSGK~LK--EfrGHsSyvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  336 KSGKCLK--EFRGHSSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             ccchhHH--HhcCccccccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence            9998764  345677889999999 899999999999999999999999999999887777888888888765 555555


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      ..             +++.+.++.. +.++.+... ...+...+.+.+|.|.++++.+.|+.++.|...+|+..+++..|
T Consensus       413 rs-------------ntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  413 RS-------------NTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             CC-------------CeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence            55             4899988864 666666432 23345777889999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          335 DSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      +..+..++-+|..+.|++-+.||.+++|.
T Consensus       479 EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=5.9e-34  Score=251.19  Aligned_cols=414  Identities=17%  Similarity=0.178  Sum_probs=289.9

Q ss_pred             HhhccccCCCcceeeeeeccCCCc---eeeeeecCcceEEeccccccccc--cceeeeeccCCceeeeeCCccceeEeec
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNS---TLASGVNEESLLLSTNSSEACAT--TATHMGSAEMGQTWASSRPALSRFATNM   89 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~---~l~s~~~d~~~~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (458)
                      ..+..+.||..+|+|+.+ -|+.+   +++||+.|+.+++|.++......  .+.. .-.+     +++...........
T Consensus        45 ~i~t~l~GH~a~VnC~~~-l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~-----~~cv~a~~~~~~~~  117 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHW-LPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKE-----CVCVVARSSVMTCK  117 (764)
T ss_pred             eeEEeccCCccceEEEEE-cccccccceEEEccCCCcEEEEEEeehheEEEEeecC-ccee-----EEEEEeeeeEEEee
Confidence            356789999999999999 88888   89999999999999998544331  1111 1111     12222222222223


Q ss_pred             cCCCcccccccccccCCcccceee------eccCCCCc-CCCcce-eccCCCee--------eeeeeeeeccCCCCeEEE
Q 012699           90 SGNDSISPSKLEFEDVGAGDIIQM------FNDGLYTE-NGRDAQ-GEEDFPEV--------KVDFLETFLGHTSPISCC  153 (458)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-~g~~~~-~~~~~~~~--------~~~~~~~~~~h~~~v~~~  153 (458)
                      +.|+++.+|+.+.........+..      .-+.++.+ .+..+. .+.....+        ++..+..+.||.+.|.++
T Consensus       118 ~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl  197 (764)
T KOG1063|consen  118 AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL  197 (764)
T ss_pred             ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence            789999999983322101111111      11223444 333332 22222222        336788899999999999


Q ss_pred             EeCCCCC---EEEEEeCCCcEEEEecCCCCCCC-----------------------------ccccccCCCceEEEEEec
Q 012699          154 RFSSSGN---NIASASVDGTVRIWTYDSSTPAS-----------------------------RNATIYCGTEIMSLEWEC  201 (458)
Q Consensus       154 ~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~  201 (458)
                      +|...+.   +|||+|.|..||||.+.-.....                             ......|..-|+++.|+ 
T Consensus       198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-  276 (764)
T KOG1063|consen  198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-  276 (764)
T ss_pred             hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-
Confidence            9987544   78999999999999864322000                             01123567789999999 


Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCC---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTT---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      +.+..|++++.|.++.+|...+..  -+......   .....-....|+|++..+++-+..             |..++|
T Consensus       277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~-------------Gg~hlW  343 (764)
T KOG1063|consen  277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT-------------GGFHLW  343 (764)
T ss_pred             cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc-------------CcEEEE
Confidence            667789999999999999887652  22222222   112346788999999988888877             699999


Q ss_pred             ECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC------------------------------
Q 012699          277 NMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG------------------------------  325 (458)
Q Consensus       277 d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------------------------  325 (458)
                      ..+. .......-..+|...|..++|+|.|.+|++.+.|.+-++|-.-..                              
T Consensus       344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV  423 (764)
T KOG1063|consen  344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV  423 (764)
T ss_pred             eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence            8433 223334445689999999999999999999988877776532100                              


Q ss_pred             -----c--------------------------------------------------------------------------
Q 012699          326 -----L--------------------------------------------------------------------------  326 (458)
Q Consensus       326 -----~--------------------------------------------------------------------------  326 (458)
                           +                                                                          
T Consensus       424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP  503 (764)
T KOG1063|consen  424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP  503 (764)
T ss_pred             ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence                 0                                                                          


Q ss_pred             -------------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCC-----eEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699          327 -------------QITGWPAHDSAISSILFGPDETSIFSLGSDG-----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       327 -------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  388 (458)
                                   .+..+-+|...|.+++.+|+++++|+++...     .|++|+..+-.+.         .....|.-.
T Consensus       504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---------~~L~~HsLT  574 (764)
T KOG1063|consen  504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---------QELEGHSLT  574 (764)
T ss_pred             ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---------heecccceE
Confidence                         0111235778899999999999999987643     4899998764322         234578889


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc----cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR----TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |+.++|||||++|++.+.|.++.+|..........    ...|..-|+++.|+|++.++||+|.|.+|+||..+
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~  648 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP  648 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence            99999999999999999999999999865433322    34799999999999999999999999999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=229.57  Aligned_cols=290  Identities=17%  Similarity=0.254  Sum_probs=244.4

Q ss_pred             hhccccCCCcceeeeeecc---CCCceeeeeecCcceEEeccccccccccce-eeeeccCCceeeeeCCccceeEeeccC
Q 012699           16 QLSRLKNNSETIKYANIGQ---TKNSTLASGVNEESLLLSTNSSEACATTAT-HMGSAEMGQTWASSRPALSRFATNMSG   91 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s---~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (458)
                      ...+-.||+.+|-.++| |   |+|-+|+|++.|+.-.+-+-+++.-++.+. |.     +..+......+....++++.
T Consensus         6 ~pl~c~ghtrpvvdl~~-s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk-----gavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAF-SPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK-----GAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             CceEEcCCCcceeEEec-cCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC-----cceeeeecCchhhhhhhhcc
Confidence            34566899999999999 6   699999999999999998888887664443 22     22333445556667788889


Q ss_pred             CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699           92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTV  171 (458)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  171 (458)
                      |=+.++|+.-..+                                  .++.| .|..-|.+++|+.|.++|++|+.+..+
T Consensus        80 dftakvw~a~tgd----------------------------------elhsf-~hkhivk~~af~~ds~~lltgg~ekll  124 (334)
T KOG0278|consen   80 DFTAKVWDAVTGD----------------------------------ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLL  124 (334)
T ss_pred             cchhhhhhhhhhh----------------------------------hhhhh-hhhheeeeEEecccchhhhccchHHHh
Confidence            9999999965433                                  33333 488889999999999999999999999


Q ss_pred             EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeE
Q 012699          172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF  251 (458)
Q Consensus       172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (458)
                      ||||++..+... .....|.+.|..+.|. ...+.+++...|++||+||.+++..++++...   .+|.++.++++|.++
T Consensus       125 rvfdln~p~App-~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  125 RVFDLNRPKAPP-KEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---SPVTSLEVSQDGRIL  199 (334)
T ss_pred             hhhhccCCCCCc-hhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEecC---CCCcceeeccCCCEE
Confidence            999998766542 3345677899999999 66777888899999999999999999998877   579999999999999


Q ss_pred             EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      .++...              .|.+||..+...++.+.++   ..|.+..++|+...+++|+.|..++.||..+++.+..+
T Consensus       200 Tia~gs--------------sV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  200 TIAYGS--------------SVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             EEecCc--------------eeEEeccccccceeeccCc---cccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence            888764              9999999999999888654   45999999999999999999999999999999998886


Q ss_pred             -eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          332 -PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       332 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                       ++|.++|.|+.|+|+|...++||.||+|++|.+...+
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence             8999999999999999999999999999999987653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=6.7e-34  Score=232.52  Aligned_cols=297  Identities=15%  Similarity=0.173  Sum_probs=248.5

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      .+.+|..|++.|.+++.+|+.++++||+.|..-.+|++.++...  .....|...|.++.|+ .++.+|++|..+|.|++
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~eltgHKDSVt~~~Fs-hdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELTGHKDSVTCCSFS-HDGTLLATGDMSGKVLV  132 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEecCCCCceEEEEEc-cCceEEEecCCCccEEE
Confidence            56688999999999999999999999999999999999998854  3456788999999999 89999999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      |+..++.....+....  ..+.-+.|+|.+..+++|+.|             |.+.+|.+.+....+.+.  +|..++++
T Consensus       133 ~~~stg~~~~~~~~e~--~dieWl~WHp~a~illAG~~D-------------GsvWmw~ip~~~~~kv~~--Gh~~~ct~  195 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEV--EDIEWLKWHPRAHILLAGSTD-------------GSVWMWQIPSQALCKVMS--GHNSPCTC  195 (399)
T ss_pred             EEcccCceEEEeeccc--CceEEEEecccccEEEeecCC-------------CcEEEEECCCcceeeEec--CCCCCccc
Confidence            9999999887775322  568889999999999999998             699999999976666664  78889999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      -.|.|+|+.++++..||+|++||+.+++++..+... .....++.++..+..++.|+.++.+++-+..+++.+.......
T Consensus       196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~  275 (399)
T KOG0296|consen  196 GEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV  275 (399)
T ss_pred             ccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Confidence            999999999999999999999999999999887632 3467789999999999999999999999888766554333111


Q ss_pred             c--ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          378 R--FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       378 ~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      .  ..........|..+.++..-.+.|+|+-||+|.|||+... .+.....|..+|+.+.|-+ ..+|++++.||.|++|
T Consensus       276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w  353 (399)
T KOG0296|consen  276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW  353 (399)
T ss_pred             ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hhheeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence            1  1111222334555556666788899999999999999876 4556668999999999999 6789999999999999


Q ss_pred             eC
Q 012699          456 SL  457 (458)
Q Consensus       456 ~l  457 (458)
                      |.
T Consensus       354 Da  355 (399)
T KOG0296|consen  354 DA  355 (399)
T ss_pred             ec
Confidence            84

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.7e-34  Score=230.01  Aligned_cols=300  Identities=17%  Similarity=0.277  Sum_probs=241.4

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC------------CC----CCccccccCCCceEEEEEecC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS------------TP----ASRNATIYCGTEIMSLEWECK  202 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------~~----~~~~~~~~~~~~v~~~~~~~~  202 (458)
                      ....+..|.+++++.+|+|||.++|+|+.|..|+|.|++..            ..    ........|-.+|.++.|+ |
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH-P  182 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH-P  182 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec-c
Confidence            44567789999999999999999999999999999998621            00    0112334566889999999 7


Q ss_pred             CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699          203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~  282 (458)
                      ....|++++.|++|+++|+......+.++......+|.++.|+|.|.+++.+....             .+++||+.+.+
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Q  249 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQ  249 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC-------------ceeEEecccee
Confidence            78899999999999999998766655566655667899999999999999998774             99999999987


Q ss_pred             eeEEe-ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCC-CCeEEEEEcCCCCEEEEecCCCeE
Q 012699          283 AMTVL-PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHD-SAISSILFGPDETSIFSLGSDGKI  359 (458)
Q Consensus       283 ~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~i  359 (458)
                      +...- +-..|.+.|+++.+++.+++.++|+.||.|++||--+++++.++. +|. ..|.+..|..+++++++.+.|..+
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence            75433 345688899999999999999999999999999998889988875 565 479999999999999999999999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC-CCCCcEEEEEEC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL-PHGAAITTVDWH  437 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~  437 (458)
                      ++|.+.++..+...... .   ..+....-+...|+....|++.-.+ .+.+.-||.++......+. +|.+.+..+.-+
T Consensus       330 kLWEi~t~R~l~~YtGA-g---~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HS  405 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGA-G---TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHS  405 (430)
T ss_pred             eeeeecCCceEEEEecC-C---cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeC
Confidence            99999987665532211 0   0111222344566666777666554 4779999999886654443 899999999999


Q ss_pred             CCCCeEEEecCCCcEEEEe
Q 012699          438 PTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       438 ~~~~~l~s~~~dg~v~iw~  456 (458)
                      |.+.-+.+|+.|-..|+|-
T Consensus       406 P~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  406 PVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CCCCceeeecccceeeeee
Confidence            9999999999999999994

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=236.98  Aligned_cols=288  Identities=16%  Similarity=0.313  Sum_probs=248.3

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc------ccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN------ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      |..+.+-|..|+|||++|++|+.||-|.+||..+++.....      .......+|.|+.|+ .+..++++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEE
Confidence            45677889999999999999999999999999888764322      122345789999999 88999999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      |.+++|.++..+... |...|+++.|+.|+..+++++.|.             ++++.-++++++++.+.  +|...|+.
T Consensus       290 Wri~tG~ClRrFdrA-HtkGvt~l~FSrD~SqiLS~sfD~-------------tvRiHGlKSGK~LKEfr--GHsSyvn~  353 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRA-HTKGVTCLSFSRDNSQILSASFDQ-------------TVRIHGLKSGKCLKEFR--GHSSYVNE  353 (508)
T ss_pred             EEEecchHHHHhhhh-hccCeeEEEEccCcchhhcccccc-------------eEEEeccccchhHHHhc--Cccccccc
Confidence            999999999888733 336899999999999999999995             99999999999999885  88899999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      ..|.++|.++++++.||+|++|+..+.+++.+++..  ..+|+++..-| +...++.|...+++.+.++..  ++..   
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVr---  428 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVR---  428 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEe---
Confidence            999999999999999999999999999999888743  45788888877 556899999999999999873  3322   


Q ss_pred             CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                        .+.......+...+.++||.|.+++..++|+.++-+.+.++.....+.-|..-|..++-+|..++||+-++||.+++|
T Consensus       429 --sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW  506 (508)
T KOG0275|consen  429 --SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW  506 (508)
T ss_pred             --eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence              223333455667788999999999999999999999999987777777899999999999999999999999999999


Q ss_pred             e
Q 012699          456 S  456 (458)
Q Consensus       456 ~  456 (458)
                      .
T Consensus       507 k  507 (508)
T KOG0275|consen  507 K  507 (508)
T ss_pred             C
Confidence            5

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.2e-35  Score=237.63  Aligned_cols=273  Identities=16%  Similarity=0.329  Sum_probs=228.2

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .....|+|+.+.  ...+++|..|.+|+|||..+..+..  ....|.+.|.|+.|.   .+.+++|+.|.+|++||++++
T Consensus       195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~--~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK--ILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             ccCCceEEEEec--chhhhcccccCceEEeccccHHHHH--hhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC
Confidence            356789999984  4579999999999999998877654  456788999999986   569999999999999999999


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-eecCCCCCcEEEEEEcc
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGEDPPAITSLCFNH  303 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~i~~~~~~~  303 (458)
                      +++.++-.+-  ..|..+.|+  +.++++++.|+             ++.+||+.....+.. ..+.+|...|+.+.|+ 
T Consensus       268 e~l~tlihHc--eaVLhlrf~--ng~mvtcSkDr-------------siaVWdm~sps~it~rrVLvGHrAaVNvVdfd-  329 (499)
T KOG0281|consen  268 EPLNTLIHHC--EAVLHLRFS--NGYMVTCSKDR-------------SIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-  329 (499)
T ss_pred             chhhHHhhhc--ceeEEEEEe--CCEEEEecCCc-------------eeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence            9998887765  578888886  56899999986             999999987553221 1235788899999986 


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          304 NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                       .+++++++.|.+|++|++.+++.++++.+|...|-|+.+  .++++++|+.|.+|++||+..+..+.         ..+
T Consensus       330 -~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---------vLe  397 (499)
T KOG0281|consen  330 -DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---------VLE  397 (499)
T ss_pred             -cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---------HHh
Confidence             569999999999999999999999999999999998887  58899999999999999999874322         234


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc---------ccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM---------RTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~---------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      +|+.-|.++.|  |.+.+++|..||+|++||+.....+.         ....|.+.|..+.|.  ...+++++.|.+|.|
T Consensus       398 GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi  473 (499)
T KOG0281|consen  398 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI  473 (499)
T ss_pred             chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE
Confidence            67788888888  57789999999999999998776552         223689999999995  457999999999999


Q ss_pred             EeCC
Q 012699          455 MSLS  458 (458)
Q Consensus       455 w~l~  458 (458)
                      ||+.
T Consensus       474 WdFl  477 (499)
T KOG0281|consen  474 WDFL  477 (499)
T ss_pred             EEcC
Confidence            9973

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.5e-34  Score=218.39  Aligned_cols=292  Identities=13%  Similarity=0.199  Sum_probs=241.2

Q ss_pred             HHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           14 EAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        14 ~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      .+.++.|..|..+|.++.| +-||+|.+++++|.++++|+...+.++....    ......+.+..+.++..+++|+.|+
T Consensus         7 tkr~~~l~~~qgaV~avry-N~dGnY~ltcGsdrtvrLWNp~rg~liktYs----ghG~EVlD~~~s~Dnskf~s~GgDk   81 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRY-NVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----GHGHEVLDAALSSDNSKFASCGGDK   81 (307)
T ss_pred             chhceeecccccceEEEEE-ccCCCEEEEcCCCceEEeecccccceeeeec----CCCceeeeccccccccccccCCCCc
Confidence            3467788999999999999 9999999999999999999998887663322    1122334466777888999999999


Q ss_pred             cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699           94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI  173 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  173 (458)
                      .+.+||+....                                  ..+.+++|.+.|+.++|+.+...+++|+.|.++++
T Consensus        82 ~v~vwDV~TGk----------------------------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~  127 (307)
T KOG0316|consen   82 AVQVWDVNTGK----------------------------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRL  127 (307)
T ss_pred             eEEEEEcccCe----------------------------------eeeecccccceeeEEEecCcceEEEeccccceeEE
Confidence            99999987754                                  77889999999999999999999999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS  253 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  253 (458)
                      ||.++....+....-.....|.++...   +..+++|+.||+++.||++.|+.....-.    .+|+++.|+++++..+.
T Consensus       128 wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La  200 (307)
T KOG0316|consen  128 WDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLA  200 (307)
T ss_pred             EEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcC----CcceeEEecCCCCEEEE
Confidence            999887765544444556778888875   67799999999999999999987655443    47999999999999999


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  333 (458)
                      ++-+             +++++.|-.+++.+..++.......-...+++.....+++|++||.|++||+.....+..+..
T Consensus       201 ~~l~-------------stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  201 SSLD-------------STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             eecc-------------ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence            9888             499999999999998876433333345566777778999999999999999999999999998


Q ss_pred             CCCC-eEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          334 HDSA-ISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       334 ~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      +... +..+.++|.-..|+++.. +.+.+|.-+
T Consensus       268 ~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~  299 (307)
T KOG0316|consen  268 VSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE  299 (307)
T ss_pred             CCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence            8887 899999998777777654 445666543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-33  Score=217.83  Aligned_cols=279  Identities=15%  Similarity=0.234  Sum_probs=234.9

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      +.+++|...|..+++ +.+|..|++|+.|+++.+|+++..++.                                     
T Consensus        14 r~~~~~~~~v~Sv~w-n~~g~~lasgs~dktv~v~n~e~~r~~-------------------------------------   55 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAW-NCDGTKLASGSFDKTVSVWNLERDRFR-------------------------------------   55 (313)
T ss_pred             HHhhhhhhcceEEEE-cccCceeeecccCCceEEEEecchhhh-------------------------------------
Confidence            778899999999999 999999999999999999987644211                                     


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEec
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTY  176 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~  176 (458)
                                                               .-...++|.+.|-.++|+|. ..++++++.|.+|++||+
T Consensus        56 -----------------------------------------~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   56 -----------------------------------------KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             -----------------------------------------hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence                                                     11234689999999999984 568999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      ..+++...   .....+-.-+.|+ |++.+++++..|..|...|.++.+.....+..   ..+..+.|+.++.+++....
T Consensus        95 r~~k~~~~---i~~~~eni~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~---~e~ne~~w~~~nd~Fflt~G  167 (313)
T KOG1407|consen   95 RSGKCTAR---IETKGENINITWS-PDGEYIAVGNKDDRITFIDARTYKIVNEEQFK---FEVNEISWNNSNDLFFLTNG  167 (313)
T ss_pred             ccCcEEEE---eeccCcceEEEEc-CCCCEEEEecCcccEEEEEecccceeehhccc---ceeeeeeecCCCCEEEEecC
Confidence            99887643   2233444567898 77889999999999999999988877665544   46788899987777776665


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                      .             |+|.|......+++..++  .|+....|+.|+|+|++||+|+.|..+.+||+...-+++.+..+.-
T Consensus       168 l-------------G~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw  232 (313)
T KOG1407|consen  168 L-------------GCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW  232 (313)
T ss_pred             C-------------ceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence            5             699999998888877764  7888899999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      +|+.+.|+.+|++||++|.|..|-|=+++++.++...          ...++...++|+|...+||.++.|
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----------~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----------PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----------eccCCceeEEecCCCceeeEEecC
Confidence            9999999999999999999999999999988766543          245567889999999999998875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=2.2e-33  Score=247.65  Aligned_cols=423  Identities=16%  Similarity=0.178  Sum_probs=306.0

Q ss_pred             HhhccccCCCcceeeeeeccCCC--ceeeeeecCcceEEeccccccccc---------------------cc--------
Q 012699           15 AQLSRLKNNSETIKYANIGQTKN--STLASGVNEESLLLSTNSSEACAT---------------------TA--------   63 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~--~~l~s~~~d~~~~iw~~~~~~~~~---------------------~~--------   63 (458)
                      +.++.|.||.+.|..++|....+  -+|||+|.|..|+||++.......                     .+        
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            45788999999999999943333  489999999999999886554110                     11        


Q ss_pred             ---eeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCc---------ccceeeeccCCCCcCCCcceeccC
Q 012699           64 ---THMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGA---------GDIIQMFNDGLYTENGRDAQGEED  131 (458)
Q Consensus        64 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~  131 (458)
                         .|-.|+..     +.-.+....|.+++.|.++-+|.......--         ......+....|+|++..+.+-+.
T Consensus       262 ll~GHeDWV~s-----v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~  336 (764)
T KOG1063|consen  262 LLMGHEDWVYS-----VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR  336 (764)
T ss_pred             hhcCcccceEE-----EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence               12233332     4444556788999999999999976653211         112223445568999988777766


Q ss_pred             CCeeeee---------eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC--CccccccCCCceEEEEEe
Q 012699          132 FPEVKVD---------FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWE  200 (458)
Q Consensus       132 ~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~  200 (458)
                      .+...++         ......||.+.|..++|.|.|++|++.+.|.|-|++-.-..+..  .......|+..+.|++|-
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v  416 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV  416 (764)
T ss_pred             cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence            6666553         23456799999999999999999999999999999864422211  112234477889999998


Q ss_pred             cCCCeEEEEEcCCCcEEEEEcCC----------C----------------------ceee---------------ec---
Q 012699          201 CKSDRLLLIGTADGGIKAWNVDA----------K----------------------RVVC---------------DL---  230 (458)
Q Consensus       201 ~~~~~~l~~~~~dg~i~~wd~~~----------~----------------------~~~~---------------~~---  230 (458)
                       +....+++|.....+|+|+...          +                      +...               +.   
T Consensus       417 -n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~  495 (764)
T KOG1063|consen  417 -NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA  495 (764)
T ss_pred             -cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence             4467789999999999998621          0                      0000               00   


Q ss_pred             -----c-------------------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          231 -----N-------------------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       231 -----~-------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                           .                   ...|...|++++.+|++++++++........        ..|++|+..+......
T Consensus       496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh--------AvI~lw~t~~W~~~~~  567 (764)
T KOG1063|consen  496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH--------AVIRLWNTANWLQVQE  567 (764)
T ss_pred             CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc--------eEEEEEeccchhhhhe
Confidence                 0                   0012234899999999999999887643222        4899999999888776


Q ss_pred             eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEE
Q 012699          287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEW  362 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  362 (458)
                      +  ..|.-.|+.++|||||++|++.+.|+++.+|......    .....+.|..-|+++.|+|++.+|+|+|.|.+|++|
T Consensus       568 L--~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW  645 (764)
T KOG1063|consen  568 L--EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW  645 (764)
T ss_pred             e--cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence            5  4788889999999999999999999999999975422    133467899999999999999999999999999999


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-----CCCEEEEEeCCccEEEEEccCCC------------cccccC
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-----NGRRLLVTSGSVRAPIYQVRGHA------------SGMRTL  425 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~~~~i~i~~~~~~~------------~~~~~~  425 (458)
                      ...+.....    . .......+...|+++++.|     .+..+++|-+.|.|.+|......            ......
T Consensus       646 ~~~~~~d~~----i-~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~  720 (764)
T KOG1063|consen  646 EEPDLRDKY----I-SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI  720 (764)
T ss_pred             eccCchhhh----h-hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccccc
Confidence            998752100    0 1112345677899999887     23478899999999999965111            112233


Q ss_pred             CCCCcEEEEEECCCC--------C--eEEEecCCCcEEEEeCC
Q 012699          426 PHGAAITTVDWHPTL--------P--MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       426 ~h~~~v~~~~~~~~~--------~--~l~s~~~dg~v~iw~l~  458 (458)
                      +|...|+.+.|.|..        .  .|++|++|..+||++++
T Consensus       721 ~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  721 GPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            688899999999862        2  57999999999999874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.3e-33  Score=229.61  Aligned_cols=310  Identities=16%  Similarity=0.239  Sum_probs=239.2

Q ss_pred             ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeee
Q 012699           61 TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFL  140 (458)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  140 (458)
                      ..+.|-.|+..     +...  .+++.+|+.||.+++|+..-                                   +..
T Consensus       100 ~~~~hdDWVSs-----v~~~--~~~IltgsYDg~~riWd~~G-----------------------------------k~~  137 (423)
T KOG0313|consen  100 QCFLHDDWVSS-----VKGA--SKWILTGSYDGTSRIWDLKG-----------------------------------KSI  137 (423)
T ss_pred             ccccchhhhhh-----hccc--CceEEEeecCCeeEEEecCC-----------------------------------ceE
Confidence            55556677766     4443  88999999999999999643                                   156


Q ss_pred             eeeccCCCCeEEEEeCCC---CCEEEEEeCCCcEEEEecCCCCCCCccccc--cCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          141 ETFLGHTSPISCCRFSSS---GNNIASASVDGTVRIWTYDSSTPASRNATI--YCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      ..+.||.++|.+++|.-.   ...+++++.|.++++|.++.++........  .|...|.+++.. .++.++++|+.|.+
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~  216 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTM  216 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccce
Confidence            678899999998887543   335999999999999999877654333333  678899999988 88999999999999


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      |.+|+..+.. ...++....         -+.                        .-.-.+-..+...+...+.+|..+
T Consensus       217 lkiWs~~~~~-~~~~E~~s~---------~rr------------------------k~~~~~~~~~~r~P~vtl~GHt~~  262 (423)
T KOG0313|consen  217 LKIWSVETDE-EDELESSSN---------RRR------------------------KKQKREKEGGTRTPLVTLEGHTEP  262 (423)
T ss_pred             eeecccCCCc-cccccccch---------hhh------------------------hhhhhhhcccccCceEEecccccc
Confidence            9999933221 111111100         000                        001111112233344456799999


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      |.++.|++ ...+++++.|.+|+.||+.++....++.. ...++++..+|..++|++|+.|..+++||.+++......  
T Consensus       263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~--  338 (423)
T KOG0313|consen  263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS--  338 (423)
T ss_pred             eeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeE--
Confidence            99999998 66899999999999999999998888765 667999999999999999999999999999987543322  


Q ss_pred             CCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCC-cccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          376 CSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHA-SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                          ....+|...|.++.|+|.. ..|++++.|+++++||+++.+ ++..+.+|.+.|.++.|.. +..+++||.|.+|+
T Consensus       339 ----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  339 ----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR  413 (423)
T ss_pred             ----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence                2345788899999999966 457788999999999999887 7777889999999999974 55899999999999


Q ss_pred             EEe
Q 012699          454 VMS  456 (458)
Q Consensus       454 iw~  456 (458)
                      |+.
T Consensus       414 i~~  416 (423)
T KOG0313|consen  414 IFK  416 (423)
T ss_pred             Eec
Confidence            985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=4.3e-33  Score=237.68  Aligned_cols=298  Identities=20%  Similarity=0.297  Sum_probs=231.7

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      .....+.+|+..|.++++.|.|-+|++|+.|.+|++||+.......   +.......+.|.++.|++ .+..|++.+...
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSA  236 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCc
Confidence            4556788999999999999999999999999999999997654321   222233457899999994 555666666667


Q ss_pred             cEEEEEcCCCceeeecc----------CCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          215 GIKAWNVDAKRVVCDLN----------TTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      ..+++|-+..+.....+          ...|...+++.+|+|..+ .+++++.|             |++++||+...+.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D-------------gtlRiWdv~~~k~  303 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD-------------GTLRIWDVNNTKS  303 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC-------------CcEEEEecCCchh
Confidence            89999976655443332          234556789999999876 56777777             6999999986443


Q ss_pred             -eEEeec---CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce---eeeeeCCCC--CeEEEEEcCCCCEEEEec
Q 012699          284 -MTVLPL---GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ---ITGWPAHDS--AISSILFGPDETSIFSLG  354 (458)
Q Consensus       284 -~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~  354 (458)
                       ..+++.   .+..-.++.++|+|+|++||+|+.||.|.+|+..+...   ...-.+|..  .|+||.||++|++|++-+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence             333332   23345789999999999999999999999999865322   233357777  999999999999999999


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC------CccEEEEEccCCCcccccCCCC
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG------SVRAPIYQVRGHASGMRTLPHG  428 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~i~i~~~~~~~~~~~~~~h~  428 (458)
                      .|+++++||+++.++++.....      ......-+.++|||+.++|++|+.      .|.+++||..+...+.++.-..
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tg------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~  457 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTG------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST  457 (641)
T ss_pred             CCCceeeeeccccccchhhhcC------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence            9999999999998776643321      122334567899999999999875      3679999998887777777667


Q ss_pred             CcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          429 AAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       429 ~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      ..|..+.|+|.-+.|..|+.||+++||
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             ceEEEEeecchhhheeeecCCCceEEE
Confidence            899999999999999999999999986

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-33  Score=251.89  Aligned_cols=288  Identities=17%  Similarity=0.282  Sum_probs=248.6

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      .|+..+.+|..++|+|....++++--.|.|++||.+-+.++.  ....|.++|..++|+ +...++++|+.|..|++|+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--rFdeHdGpVRgv~FH-~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--RFDEHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--hhhccCCccceeeec-CCCCeEEecCCccEEEEEec
Confidence            456677889999999999999999999999999998887765  355688999999999 77889999999999999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      .+.+++.++..|.  ..|+.+.|++.-+++++++.|.             +|+||+..+.+++..++  +|...|+|..|
T Consensus        81 k~rrclftL~GHl--DYVRt~~FHheyPWIlSASDDQ-------------TIrIWNwqsr~~iavlt--GHnHYVMcAqF  143 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHL--DYVRTVFFHHEYPWILSASDDQ-------------TIRIWNWQSRKCIAVLT--GHNHYVMCAQF  143 (1202)
T ss_pred             ccceehhhhcccc--ceeEEeeccCCCceEEEccCCC-------------eEEEEeccCCceEEEEe--cCceEEEeecc
Confidence            9999999888877  6799999999999999999995             99999999999999986  67778999999


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCc-----------------------------eeeeeeCCCCCeEEEEEcCCCCEEEE
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGL-----------------------------QITGWPAHDSAISSILFGPDETSIFS  352 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~  352 (458)
                      +|....+++++.|.+|+|||+..-+                             ....+.+|...|+-++|+|.-..+++
T Consensus       144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS  223 (1202)
T KOG0292|consen  144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS  223 (1202)
T ss_pred             CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence            9999999999999999999974210                             12346789999999999999999999


Q ss_pred             ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699          353 LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       353 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                      |++|..|++|.+...+.  |     ....-.+|...|.++-|+|...++++.++|++|++||+.....+..+....+.-+
T Consensus       224 G~DDRqVKlWrmnetKa--W-----EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW  296 (1202)
T KOG0292|consen  224 GADDRQVKLWRMNETKA--W-----EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW  296 (1202)
T ss_pred             cCCcceeeEEEeccccc--e-----eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE
Confidence            99999999999985421  2     2223347888999999999999999999999999999999887777776778999


Q ss_pred             EEEECCCCCeEEEecCCCcEEEEeC
Q 012699          433 TVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .++-+|..+++|+|- |+-+.||.+
T Consensus       297 ~laahP~lNLfAAgH-DsGm~VFkl  320 (1202)
T KOG0292|consen  297 ILAAHPELNLFAAGH-DSGMIVFKL  320 (1202)
T ss_pred             EEEecCCcceeeeec-CCceEEEEE
Confidence            999999999777665 444555544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-32  Score=246.25  Aligned_cols=346  Identities=17%  Similarity=0.222  Sum_probs=278.2

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      .+..-+..|..++| .|...+++++-..|.|.+||+.-+.++..+..    .+|....+.|-+.+.++++|+.|-.|++|
T Consensus         4 kfEskSsRvKglsF-HP~rPwILtslHsG~IQlWDYRM~tli~rFde----HdGpVRgv~FH~~qplFVSGGDDykIkVW   78 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSF-HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE----HDGPVRGVDFHPTQPLFVSGGDDYKIKVW   78 (1202)
T ss_pred             hhhcccccccceec-CCCCCEEEEeecCceeeeehhhhhhHHhhhhc----cCCccceeeecCCCCeEEecCCccEEEEE
Confidence            45567788999999 99999999999999999999998877744431    14444557788889999999999999999


Q ss_pred             ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699           99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS  178 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  178 (458)
                      +...+.                                  ++.+|.||-+.|+.+.|++.-.+|+|+|.|.||+||+..+
T Consensus        79 nYk~rr----------------------------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   79 NYKTRR----------------------------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS  124 (1202)
T ss_pred             ecccce----------------------------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence            987755                                  7788999999999999999999999999999999999999


Q ss_pred             CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---------------------------eeecc
Q 012699          179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---------------------------VCDLN  231 (458)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---------------------------~~~~~  231 (458)
                      ++++.  ....|.+-|.|..|+ +...++++++-|.+||+||+..-+.                           +...-
T Consensus       125 r~~ia--vltGHnHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  125 RKCIA--VLTGHNHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             CceEE--EEecCceEEEeeccC-CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            98865  456788899999999 6778999999999999999854211                           11111


Q ss_pred             CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE
Q 012699          232 TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS  311 (458)
Q Consensus       232 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  311 (458)
                      ...|...|.-++|+|.-+.+++|+.|+             .|++|.+...+.-..-+..+|.+.|.++-|+|...++++.
T Consensus       202 LEGHDRGVNwaAfhpTlpliVSG~DDR-------------qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn  268 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHPTLPLIVSGADDR-------------QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN  268 (1202)
T ss_pred             ecccccccceEEecCCcceEEecCCcc-------------eeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence            122335688999999999999999997             9999999887776666677899999999999999999999


Q ss_pred             ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       312 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                      ++|++|+|||+...+.+++++...+..+.++-+|..+++++| .|+-+.+|.+....+                     +
T Consensus       269 sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp---------------------a  326 (1202)
T KOG0292|consen  269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP---------------------A  326 (1202)
T ss_pred             CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc---------------------e
Confidence            999999999999999999998888999999999999877755 566677888764311                     1


Q ss_pred             EEEccCCCEEEEEeCCccEEEEEccCCCccccc--C---CCCCcEEEEEECCCCCeEE
Q 012699          392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--L---PHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--~---~h~~~v~~~~~~~~~~~l~  444 (458)
                      .+.  +++.|+..- +..|+.+|+.+.+.....  .   ....++.+++++|....+.
T Consensus       327 ~~v--~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vl  381 (1202)
T KOG0292|consen  327 YAV--NGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVL  381 (1202)
T ss_pred             EEE--cCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEE
Confidence            222  233343333 888999999885433221  1   1246889999999877433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-31  Score=215.13  Aligned_cols=288  Identities=15%  Similarity=0.222  Sum_probs=231.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC--CCcE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA--DGGI  216 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i  216 (458)
                      ..+.++.-.+.|+++.|+++|.+|++++.|.++++||..++.....  ...+...+..++|..++.. ++.++.  |.+|
T Consensus         6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t--i~skkyG~~~~~Fth~~~~-~i~sStk~d~tI   82 (311)
T KOG1446|consen    6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKYGVDLACFTHHSNT-VIHSSTKEDDTI   82 (311)
T ss_pred             cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE--eecccccccEEEEecCCce-EEEccCCCCCce
Confidence            4455666778999999999999999999999999999998877642  2233446777888744444 444444  8899


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      +..++.+++.++.+..|.  ..|..++.+|.+..+++++.|+             +|++||++..++.-.+...+.    
T Consensus        83 ryLsl~dNkylRYF~GH~--~~V~sL~~sP~~d~FlS~S~D~-------------tvrLWDlR~~~cqg~l~~~~~----  143 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHK--KRVNSLSVSPKDDTFLSSSLDK-------------TVRLWDLRVKKCQGLLNLSGR----  143 (311)
T ss_pred             EEEEeecCceEEEcCCCC--ceEEEEEecCCCCeEEecccCC-------------eEEeeEecCCCCceEEecCCC----
Confidence            999999999999999887  7899999999999999999995             999999998888877765432    


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCC--ceeeeee---CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSAG--LQITGWP---AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      ..++|+|+|-++|++.....|++||++.-  .+..++.   +.....+.|.|+|||++++.++..+.+.+.|.-++....
T Consensus       144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~  223 (311)
T KOG1446|consen  144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS  223 (311)
T ss_pred             cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence            45899999999999988889999999873  3444443   336688999999999999999999999999998875322


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCC
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                       ...     ............+|+||++++++|+.||+|++|+++++.....+.+ +..++.++.|+|.-.++++++.  
T Consensus       224 -tfs-----~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--  295 (311)
T KOG1446|consen  224 -TFS-----GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--  295 (311)
T ss_pred             -eEe-----eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--
Confidence             111     1111222236789999999999999999999999999998888887 7899999999999888887754  


Q ss_pred             cEEEEe
Q 012699          451 SVQVMS  456 (458)
Q Consensus       451 ~v~iw~  456 (458)
                      .+-+|=
T Consensus       296 ~l~fw~  301 (311)
T KOG1446|consen  296 NLVFWL  301 (311)
T ss_pred             eEEEEe
Confidence            566663

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=6.1e-34  Score=236.33  Aligned_cols=292  Identities=15%  Similarity=0.237  Sum_probs=243.3

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      .....+..|.+.|..+.|-++...|++|+.|..|++|++...+...........++|+.+.|. +++..+++++.|+.++
T Consensus       166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d-~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFD-SDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeec-CCCceEEeecCCCcee
Confidence            355677889999999999999889999999999999999877644333445556789999999 6778888999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +|++...+...++..|.  ..|+++.|......+++++.|+             +|++||+....+.+++-...   .+.
T Consensus       245 ~Wnvd~~r~~~TLsGHt--dkVt~ak~~~~~~~vVsgs~DR-------------tiK~WDl~k~~C~kt~l~~S---~cn  306 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHT--DKVTAAKFKLSHSRVVSGSADR-------------TIKLWDLQKAYCSKTVLPGS---QCN  306 (459)
T ss_pred             eeeccchhhhhhhcccc--cceeeehhhccccceeeccccc-------------hhhhhhhhhhheeccccccc---ccc
Confidence            99999999999998866  7899999998888899999986             99999999988887764332   245


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .++.+  ...+++|..|+.|++||.++..+....+.+. .|+++..++++..|.+++.|.++.+.|+++....... ...
T Consensus       307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~-sA~  382 (459)
T KOG0288|consen  307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF-SAE  382 (459)
T ss_pred             ceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe-ecc
Confidence            55554  5578999999999999999999999988765 8999999999999999999999999999986543322 111


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCC-cEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGA-AITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      .+    ......+.+.|||++.|+++|+.||.|+||++.+++....+.. +.. .|++++|+|.|..|++++.++.+.+|
T Consensus       383 g~----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  383 GF----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cc----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            11    1233478899999999999999999999999999876555543 333 79999999999999999999999999


Q ss_pred             e
Q 012699          456 S  456 (458)
Q Consensus       456 ~  456 (458)
                      .
T Consensus       459 ~  459 (459)
T KOG0288|consen  459 T  459 (459)
T ss_pred             C
Confidence            4

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-33  Score=251.33  Aligned_cols=309  Identities=17%  Similarity=0.174  Sum_probs=220.8

Q ss_pred             hcccc-CCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           17 LSRLK-NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        17 ~~~l~-~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      .+.+. .|.+.|.++.| |+||+|||||+.|+.|+||.+...+.. ........+.  +..+.  ..+....+.+..+.+
T Consensus       259 ~Qe~~~ah~gaIw~mKF-S~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~--~~~~~--~~s~~~p~~s~~~~~  332 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKF-SHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCM--YFEYN--ANSQIEPSTSSEEKI  332 (712)
T ss_pred             eeccccccCCcEEEEEe-CCCCceeeecCCCceEEEEEEeccchh-cccccccchh--hhhhh--hccccCccccccccc
Confidence            34566 89999999999 999999999999999999998764331 0000000000  00000  000000000000000


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      .--.....            ...-++.   .........+.-+++..|.||.+.|..+.||.++ +|++++.|.|||+|+
T Consensus       333 ~~~~s~~~------------~~~~s~~---~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh  396 (712)
T KOG0283|consen  333 SSRTSSSR------------KGSQSPC---VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWH  396 (712)
T ss_pred             cccccccc------------cccCCcc---ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeec
Confidence            00000000            0000011   0000011112225788899999999999999765 899999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      +...+++.   .+.|..-|+|++|+|.|++++++|+-||.+|||++...+.+.-...+   .-|++++|.|+|+..+.|+
T Consensus       397 ~~~~~CL~---~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  397 PGRKECLK---VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             CCCcceee---EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEE
Confidence            99887764   67889999999999999999999999999999999988887666555   4799999999999999999


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCC------CCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCcee
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED------PPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~  328 (458)
                      .+             |.+++|+....+....+....+      ...|+.+.|.|. ...+++.+.|..|+|||.++..++
T Consensus       471 ~~-------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv  537 (712)
T KOG0283|consen  471 FN-------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV  537 (712)
T ss_pred             ec-------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence            98             6999999998887766544332      237999999984 345777789999999999988888


Q ss_pred             eeeeCCCC--CeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          329 TGWPAHDS--AISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       329 ~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      ..++++..  .-....|+.||++|++++.|..|++|++..
T Consensus       538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  538 HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            88886643  334678899999999999999999999843

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-33  Score=214.93  Aligned_cols=281  Identities=14%  Similarity=0.262  Sum_probs=225.9

Q ss_pred             EEEEeCCC-CCEEEEEe-------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          151 SCCRFSSS-GNNIASAS-------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       151 ~~~~~~~~-~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      .++.|||= .++||.+.       ..|++.|-++.....+.......-...+..++|++...+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            46788882 23333321       36889999987555554445555667899999998889999999999999999954


Q ss_pred             C-CceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          223 A-KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       223 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      . ..++..++.|.  ..|.++.|++..+ .+++++-|             |+|++|+....+.+.++.  +|...|...+
T Consensus        92 ~~s~Pi~~~kEH~--~EV~Svdwn~~~r~~~ltsSWD-------------~TiKLW~~~r~~Sv~Tf~--gh~~~Iy~a~  154 (311)
T KOG0277|consen   92 MPSKPIHKFKEHK--REVYSVDWNTVRRRIFLTSSWD-------------GTIKLWDPNRPNSVQTFN--GHNSCIYQAA  154 (311)
T ss_pred             CCCcchhHHHhhh--hheEEeccccccceeEEeeccC-------------CceEeecCCCCcceEeec--CCccEEEEEe
Confidence            3 34556666555  6899999998665 55666666             699999999888888864  7889999999


Q ss_pred             Ecc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          301 FNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       301 ~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      |+| .++++++++.|+.+++||++..-....+..|...|.++.|+. +...|+||+.|+.|+.||+++.+.++       
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl-------  227 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL-------  227 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc-------
Confidence            999 578999999999999999987444445899999999999988 67789999999999999999876543       


Q ss_pred             ccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEE
Q 012699          379 FCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVM  455 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw  455 (458)
                       ....+|...|..+.|||.. ..|++++.|-+++|||...+... .+...|...|..+.|++-.. ++|+++.|+.++||
T Consensus       228 -~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw  306 (311)
T KOG0277|consen  228 -FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW  306 (311)
T ss_pred             -eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeee
Confidence             2335788899999999965 68889999999999999855433 34446889999999998644 99999999999999


Q ss_pred             e
Q 012699          456 S  456 (458)
Q Consensus       456 ~  456 (458)
                      +
T Consensus       307 ~  307 (311)
T KOG0277|consen  307 N  307 (311)
T ss_pred             c
Confidence            8

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-32  Score=215.18  Aligned_cols=299  Identities=12%  Similarity=0.187  Sum_probs=237.2

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      ..|+||..+++-+.| +.+|.+|.|++.|.+..+|-...++                                       
T Consensus         4 i~l~GHERplTqiKy-N~eGDLlFscaKD~~~~vw~s~nGe---------------------------------------   43 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKY-NREGDLLFSCAKDSTPTVWYSLNGE---------------------------------------   43 (327)
T ss_pred             cccccCccccceEEe-cCCCcEEEEecCCCCceEEEecCCc---------------------------------------
Confidence            468899999999999 9999999999999999999643331                                       


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                                                               .+-++.||++.|+|++.+-+.++++||+.|.++++||++
T Consensus        44 -----------------------------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen   44 -----------------------------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             -----------------------------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence                                                     445678999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-----CCcEEEEEcC-------CCceeeeccCCCCCCceeeeeec
Q 012699          178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-----DGGIKAWNVD-------AKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      +++.+.   ....+.+|..+.|+ .++++++....     .+.|.++|++       +.++...+..++  +.+..+-|.
T Consensus        83 tGk~la---~~k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg  156 (327)
T KOG0643|consen   83 TGKQLA---TWKTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWG  156 (327)
T ss_pred             CCcEEE---EeecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeec
Confidence            998764   55667899999999 56666655543     4689999998       445566666555  789999999


Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG  325 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  325 (458)
                      |-+..++++..+             |.|.+||.++++....- ...|...|+.+.++|+..++++++.|.+-++||.++-
T Consensus       157 ~l~~~ii~Ghe~-------------G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl  222 (327)
T KOG0643|consen  157 PLGETIIAGHED-------------GSISIYDARTGKELVDS-DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL  222 (327)
T ss_pred             ccCCEEEEecCC-------------CcEEEEEcccCceeeec-hhhhccccccccccCCcceEEecccCccceeeeccce
Confidence            999999999998             69999999998655433 2457778999999999999999999999999999999


Q ss_pred             ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEE--eccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEW--SLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       326 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +.++++.. ..||++.+++|....++.|+.....-+=  +.+.++-   ......+..+....+|-++|++++|+|+|+.
T Consensus       223 ~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks  301 (327)
T KOG0643|consen  223 EVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS  301 (327)
T ss_pred             eeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence            99888864 7799999999977777766543222111  1111100   0000112234456688899999999999999


Q ss_pred             EEEEeCCccEEEEEccCC
Q 012699          401 LLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       401 l~~~~~~~~i~i~~~~~~  418 (458)
                      .++|++||.|++...+..
T Consensus       302 YsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccCCCCceEEEEEeccc
Confidence            999999999999876543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=231.03  Aligned_cols=284  Identities=17%  Similarity=0.280  Sum_probs=234.1

Q ss_pred             eeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699          138 DFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI  216 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  216 (458)
                      .++..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+..  ....|.+.|..+++. .  ..+++++.|.+|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--~f~AH~G~V~Gi~v~-~--~~~~tvgdDKtv  131 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--TFKAHEGLVRGICVT-Q--TSFFTVGDDKTV  131 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--eeecccCceeeEEec-c--cceEEecCCcce
Confidence            3667789999999999999976 679999999999999998877654  445677899999997 3  668999999999


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      +.|.++.. +..++...   +.+..+.-+..+..+++++.               .|.|||.....++..+....  ..|
T Consensus       132 K~wk~~~~-p~~tilg~---s~~~gIdh~~~~~~FaTcGe---------------~i~IWD~~R~~Pv~smswG~--Dti  190 (433)
T KOG0268|consen  132 KQWKIDGP-PLHTILGK---SVYLGIDHHRKNSVFATCGE---------------QIDIWDEQRDNPVSSMSWGA--DSI  190 (433)
T ss_pred             eeeeccCC-cceeeecc---ccccccccccccccccccCc---------------eeeecccccCCccceeecCC--Cce
Confidence            99998763 44444433   45677777777888888875               89999999989999887644  569


Q ss_pred             EEEEEccCC-CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699          297 TSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       297 ~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      .++.|+|.. ..|+++..|+.|.+||+++..+++.+.- .-.-+.|+|+|.+--+++++.|..++.||++....++    
T Consensus       191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~----  265 (433)
T KOG0268|consen  191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL----  265 (433)
T ss_pred             eEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccc----
Confidence            999999965 4667777999999999999998876542 4456789999988889999999999999999865543    


Q ss_pred             CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                          .....|.+.|..+.|||.|+-+++|+.|.+|+||.++.+....... .-...|.++.||.|.+++++||+|+.||+
T Consensus       266 ----~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  266 ----NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             ----hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence                2334788899999999999999999999999999998764332222 34568999999999999999999999999


Q ss_pred             Ee
Q 012699          455 MS  456 (458)
Q Consensus       455 w~  456 (458)
                      |.
T Consensus       342 Wk  343 (433)
T KOG0268|consen  342 WK  343 (433)
T ss_pred             ee
Confidence            96

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=7.7e-33  Score=221.68  Aligned_cols=315  Identities=14%  Similarity=0.259  Sum_probs=251.3

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      -.-|..|+.+..+.+| ++||.++|+|+.|-+|+|.|.+..-......                                
T Consensus       105 t~ylt~HK~~cR~aaf-s~DG~lvATGsaD~SIKildvermlaks~~~--------------------------------  151 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAF-SPDGSLVATGSADASIKILDVERMLAKSKPK--------------------------------  151 (430)
T ss_pred             eEEEeecccceeeeee-CCCCcEEEccCCcceEEEeehhhhhhhcchh--------------------------------
Confidence            4567789999999999 9999999999999999999876441110000                                


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                        ++..                   .         +....-..+++|..|.++|+++.|+|....|++|+.|++|+++|+
T Consensus       152 --em~~-------------------~---------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDf  201 (430)
T KOG0640|consen  152 --EMIS-------------------G---------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDF  201 (430)
T ss_pred             --hhcc-------------------C---------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEec
Confidence              0000                   0         000011267889999999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc-CCCCCCceeeeeecCCCCeEEEee
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN-TTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      ...........+....+|.++.|+ |.+.+|+.|....++++||+++-++..... ..++...|.++.+++.+++.++++
T Consensus       202 sK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS  280 (430)
T KOG0640|consen  202 SKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS  280 (430)
T ss_pred             ccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec
Confidence            766554444555667899999999 789999999999999999999988765433 345567899999999999999999


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD  335 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  335 (458)
                      .|             |.|++||--+++++..+........|.+..|..+++|+++.+.|..+++|.+.+++++..+.+-.
T Consensus       281 kD-------------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  281 KD-------------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             cC-------------CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            99             69999999999999988654445689999999999999999999999999999999999887542


Q ss_pred             -----CCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCcc
Q 012699          336 -----SAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVR  409 (458)
Q Consensus       336 -----~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~  409 (458)
                           .--+...|+....+++.-.. .+.+.-||.++....        .....+|.+.+..+.-||.+.-+++++.|-+
T Consensus       348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~--------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV--------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             cccchhhhhhhhhcCccceEEccccccCceeeccccchhhh--------hhcccCCCCCceEEEeCCCCCceeeecccce
Confidence                 12234567777777776554 567999999986443        2234478899999999999999999999999


Q ss_pred             EEEEEcc
Q 012699          410 APIYQVR  416 (458)
Q Consensus       410 i~i~~~~  416 (458)
                      +++|--+
T Consensus       420 aRFWyrr  426 (430)
T KOG0640|consen  420 ARFWYRR  426 (430)
T ss_pred             eeeeeec
Confidence            9999643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.4e-32  Score=225.91  Aligned_cols=284  Identities=15%  Similarity=0.233  Sum_probs=229.5

Q ss_pred             CCCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           22 NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        22 ~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      .|.+.|.++.. .  ++.++||+.||.+++|+.......      +++...+|...        ......+++++.|.++
T Consensus       103 ~hdDWVSsv~~-~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~--------n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  103 LHDDWVSSVKG-A--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIK--------NSSSCLFVSASMDQTL  171 (423)
T ss_pred             cchhhhhhhcc-c--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEec--------CCccceEEEecCCceE
Confidence            48888888888 4  899999999999999998765443      34444444332        2234479999999999


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      ++|.++....                              ..+.++.-+||...|-+++..++|.++++|+.|.+++||+
T Consensus       172 ~Lw~~~~~~~------------------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs  221 (423)
T KOG0313|consen  172 RLWKWNVGEN------------------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS  221 (423)
T ss_pred             EEEEecCchh------------------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecc
Confidence            9999876431                              1113334459999999999999999999999999999999


Q ss_pred             cCCCCC-----------------------CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699          176 YDSSTP-----------------------ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       176 ~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  232 (458)
                      ......                       ........|..+|.++.|. + ...+++++.|.+|+.||+.+++...++..
T Consensus       222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDletg~~~~~~~~  299 (423)
T KOG0313|consen  222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLETGGLKSTLTT  299 (423)
T ss_pred             cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEeecccceeeeec
Confidence            322110                       1112334577889999998 3 67899999999999999999999888776


Q ss_pred             CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCC-CEEEE
Q 012699          233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNG-KILAA  310 (458)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~  310 (458)
                      .   ....++.++|...++++++.++             .+++||.+++. .+..+++.+|.+.|.++.|+|.. ..|++
T Consensus       300 ~---ksl~~i~~~~~~~Ll~~gssdr-------------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  300 N---KSLNCISYSPLSKLLASGSSDR-------------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             C---cceeEeecccccceeeecCCCC-------------ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            6   4789999999999999999996             99999999754 34455667899999999999954 56789


Q ss_pred             EecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          311 SAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       311 ~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      |+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.|.+|+++.-.
T Consensus       364 ~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            9999999999999977 999999999999999996 45599999999999998754

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=215.53  Aligned_cols=299  Identities=14%  Similarity=0.224  Sum_probs=219.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc---cccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR---NATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      .+..|++|.+.|++++|+.||++|+|++.|++|++|+++.-.....   ...... ...+.+.|.|+....+++.-...+
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCCE
Confidence            4557899999999999999999999999999999999876433211   111111 245788999777777777777779


Q ss_pred             EEEEEcCCCc---eeeeccC-------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          216 IKAWNVDAKR---VVCDLNT-------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       216 i~~wd~~~~~---~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                      +++|.+...+   ....+..       ..+...+.++-...++.++++++.+.             .|.+|+++ |+.+.
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt-------------~i~lw~lk-Gq~L~  222 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT-------------KICLWDLK-GQLLQ  222 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCC-------------cEEEEecC-Cceee
Confidence            9999875322   1111110       11223566677778888999998885             99999999 78877


Q ss_pred             EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC---CC-----ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC
Q 012699          286 VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS---AG-----LQITGWPAHDSAISSILFGPDETSIFSLGSDG  357 (458)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  357 (458)
                      .+..  ....-...+.||+|+++++++..-.|++|.+-   .|     ..+..+++|...|..++|+|+.+.+++.|.||
T Consensus       223 ~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  223 SIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             eecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            7753  23345678899999999999998999999862   22     34667899999999999999999999999999


Q ss_pred             eEEEEeccCCCeeEEeecCCcc--cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEE
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRF--CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTV  434 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~  434 (458)
                      ++++||..-.-..-......+.  ............++++|+|+.||++.+. .++++..+.++....+. .|...|+++
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~i  379 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSI  379 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeE
Confidence            9999998643221111010010  1122334455689999999999876654 58999888876554444 699999999


Q ss_pred             EECCCCCeEEEecCCCcEEEEe
Q 012699          435 DWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       435 ~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      +|+++|++++|+| |..+++..
T Consensus       380 s~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  380 SYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EecCCCcEEeeec-ceeeeeec
Confidence            9999999999998 66777653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-32  Score=237.78  Aligned_cols=275  Identities=17%  Similarity=0.290  Sum_probs=232.1

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      +-+.|+. .+.||.|. ...|.+|+..++.... .... +...|+++.|+ +++.+|++|..+|.|.+||..+.+.+..+
T Consensus       181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~-l~~~-~~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTE-LCSF-GEELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             hHhhccc-CCeEEEEe-cceEEEEecCCCceEE-eEec-CCCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccc
Confidence            3466774 34566654 4679999988877432 1222 27889999999 88999999999999999999999888888


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (458)
                      ..+ +...|-+++|.  ...+.+|+.+             +.|..+|++..+.... .+.+|...|..+.|+++++++|+
T Consensus       256 ~~~-h~~rvg~laW~--~~~lssGsr~-------------~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lAS  318 (484)
T KOG0305|consen  256 RGS-HASRVGSLAWN--SSVLSSGSRD-------------GKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLAS  318 (484)
T ss_pred             cCC-cCceeEEEecc--CceEEEecCC-------------CcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeecc
Confidence            773 33789999998  6678888877             5999999998777666 46789999999999999999999


Q ss_pred             EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecC--CCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGS--DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       311 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      |+.|+.+.|||....++...+..|...|.+++|+| ....||+|+.  |+.|++||..++....          ......
T Consensus       319 GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----------~vdtgs  388 (484)
T KOG0305|consen  319 GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----------SVDTGS  388 (484)
T ss_pred             CCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----------ccccCC
Confidence            99999999999988899999999999999999999 5568888765  9999999999764433          224566


Q ss_pred             ceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          388 CRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .|..+.|++..+-|+++.+  ++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++
T Consensus       389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            7999999999977776544  678999999999888899999999999999999999999999999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5e-32  Score=245.10  Aligned_cols=297  Identities=16%  Similarity=0.241  Sum_probs=212.3

Q ss_pred             eeeeec-cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc--------cccCCCceEEEEEec--CCCe--
Q 012699          139 FLETFL-GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--------TIYCGTEIMSLEWEC--KSDR--  205 (458)
Q Consensus       139 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~--~~~~--  205 (458)
                      ..+.+. .|.+.|+++.||+||+|||+||.|+.|+||.+...+......        .....+.+..+.-++  ..++  
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344556 899999999999999999999999999999986633211000        000000011111110  0000  


Q ss_pred             EEEEEcCCCcEEEEEcC----CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          206 LLLIGTADGGIKAWNVD----AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      ..-.+..... .+.+..    ..++++.+..|.  ..|.++.|+.++ +|++++.|.             ++++|++...
T Consensus       338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt--~DILDlSWSKn~-fLLSSSMDK-------------TVRLWh~~~~  400 (712)
T KOG0283|consen  338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHT--ADILDLSWSKNN-FLLSSSMDK-------------TVRLWHPGRK  400 (712)
T ss_pred             ccccccCCcc-ccCCCccccccccchhhhhccc--hhheecccccCC-eeEeccccc-------------cEEeecCCCc
Confidence            1111111112 111111    234455555554  789999999765 667777775             9999999999


Q ss_pred             ceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          282 KAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                      .++..|.   |...|+|++|+| |.+||++|+.||.|+||++...+.+. +..-..-|++++|.|||++.+.|+.+|.++
T Consensus       401 ~CL~~F~---HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  401 ECLKVFS---HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCR  476 (712)
T ss_pred             ceeeEEe---cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence            9999984   788999999999 78999999999999999998766544 444458899999999999999999999999


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCC--CcEEEEEEC
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHG--AAITTVDWH  437 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~--~~v~~~~~~  437 (458)
                      +|+....+..........-.....+. .|+.+.|.|.. ..+++.+.|.+|+|+|......+.++.|+.  ..-...+|+
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs  555 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS  555 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence            99998765443322221212222233 79999999854 468889999999999998887777777643  344567899


Q ss_pred             CCCCeEEEecCCCcEEEEeC
Q 012699          438 PTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       438 ~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .||++|+++++|..|+||++
T Consensus       556 ~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  556 SDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             cCCCEEEEeecCceEEEEeC
Confidence            99999999999999999996

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.7e-32  Score=216.19  Aligned_cols=304  Identities=18%  Similarity=0.276  Sum_probs=251.5

Q ss_pred             cceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC
Q 012699          125 DAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD  204 (458)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  204 (458)
                      .+++....+.++.+.++.|.||.+.|+.++.......+.+++.|.+.+||.++++.++.  ....|.+.|+++.|+ +.+
T Consensus       126 rivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--~Y~GH~GSVNsikfh-~s~  202 (481)
T KOG0300|consen  126 RIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA--TYTGHTGSVNSIKFH-NSG  202 (481)
T ss_pred             hheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee--eecccccceeeEEec-ccc
Confidence            44455566777888999999999999999998888899999999999999999999865  455688999999999 789


Q ss_pred             eEEEEEcCCCcEEEEEc------CCC----------------------------------ceeeeccCCCCCCceeeeee
Q 012699          205 RLLLIGTADGGIKAWNV------DAK----------------------------------RVVCDLNTTDAFPSVLDLKC  244 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~------~~~----------------------------------~~~~~~~~~~~~~~v~~~~~  244 (458)
                      .++++++.|++-.||..      ...                                  .++..+.  .|...|.+..|
T Consensus       203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--gH~~vV~a~dW  280 (481)
T KOG0300|consen  203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--GHRAVVSACDW  280 (481)
T ss_pred             ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--ccccceEehhh
Confidence            99999999999999972      110                                  0111111  23355777888


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA  324 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  324 (458)
                      ...++.+++++.|+             +..+||+++++++..+.  +|....+.++-+|..+++++.+.|.+.++||.+.
T Consensus       281 L~gg~Q~vTaSWDR-------------TAnlwDVEtge~v~~Lt--GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  281 LAGGQQMVTASWDR-------------TANLWDVETGEVVNILT--GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             hcCcceeeeeeccc-------------cceeeeeccCceecccc--CcchhccccccCCcceEEEEeccCceeEeccchh
Confidence            88899999999996             99999999999998875  7778899999999999999999999999999985


Q ss_pred             C-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699          325 G-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV  403 (458)
Q Consensus       325 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  403 (458)
                      . ..+..|++|...|+++.|..+. .+++|++|.+|++||+++...++....         ...+++.++.+..++.++.
T Consensus       346 aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR---------tdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  346 AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR---------TDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee---------cCCccceeEeecCCceEEe
Confidence            3 4577899999999999998765 688999999999999999876654432         3456888999999999999


Q ss_pred             EeCCccEEEEEccCCCccc----ccCCCCCcEEEEEECCCCC--eEEEecCCCcEEEEeCC
Q 012699          404 TSGSVRAPIYQVRGHASGM----RTLPHGAAITTVDWHPTLP--MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       404 ~~~~~~i~i~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~l~  458 (458)
                      -..+..|++||+++.....    ...+|...|+|++|..+-.  -|.+||.|..+.=|.++
T Consensus       416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence            9999999999999874321    2238999999999976543  58899999999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-31  Score=238.83  Aligned_cols=384  Identities=14%  Similarity=0.226  Sum_probs=297.2

Q ss_pred             HHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccc-eeEeeccCC
Q 012699           14 EAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALS-RFATNMSGN   92 (458)
Q Consensus        14 ~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~   92 (458)
                      .+.+.+++++...|+++.= +|-=..+|.|..+|+++|.++..++.+-.+.+-    .++...+.|..|+ ..+++++..
T Consensus       192 ~K~v~~f~~~~s~IT~ieq-sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d----~g~VtslSFrtDG~p~las~~~~  266 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQ-SPALDVVAIGLENGTVIIFNLKFDKILMSFKQD----WGRVTSLSFRTDGNPLLASGRSN  266 (910)
T ss_pred             CcEEEEecccccceeEecc-CCcceEEEEeccCceEEEEEcccCcEEEEEEcc----ccceeEEEeccCCCeeEEeccCC
Confidence            3467889999999999999 999999999999999999999998776444432    2455557776654 456777778


Q ss_pred             CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeee-eccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699           93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLET-FLGHTSPISCCRFSSSGNNIASASVDGTV  171 (458)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  171 (458)
                      |.+.+||++...                                  .+.. ...|.+.|....|-|....+++++.|..+
T Consensus       267 G~m~~wDLe~kk----------------------------------l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl  312 (910)
T KOG1539|consen  267 GDMAFWDLEKKK----------------------------------LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL  312 (910)
T ss_pred             ceEEEEEcCCCe----------------------------------eeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence            999999997744                                  2222 34789999999999999999999999999


Q ss_pred             EEEecCCCCCCCcc--ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC----------------C
Q 012699          172 RIWTYDSSTPASRN--ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT----------------T  233 (458)
Q Consensus       172 ~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----------------~  233 (458)
                      ++|=.+++....+.  ....|..+..++.|.-.++..+.+++.|++++.+++......+.+..                .
T Consensus       313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~  392 (910)
T KOG1539|consen  313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK  392 (910)
T ss_pred             eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence            99977655543322  33457788999999878899999999999999998754322111111                0


Q ss_pred             CCCCceeeeeecCCCC----eEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeec---CCCCCcEEEEEEccCC
Q 012699          234 DAFPSVLDLKCSPVEP----IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPL---GEDPPAITSLCFNHNG  305 (458)
Q Consensus       234 ~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~---~~~~~~i~~~~~~~~~  305 (458)
                      ....+|..+++.....    .++++..+            +-..+.|+.++... ...+..   ......+++++.++.|
T Consensus       393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~------------~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG  460 (910)
T KOG1539|consen  393 LKLPPIVEFAFENAREKEWDNVITAHKG------------KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG  460 (910)
T ss_pred             hcCCcceeeecccchhhhhcceeEEecC------------cceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence            0113444554443211    22333222            24899999987554 223321   1123568999999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeee---eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGW---PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  382 (458)
                      ++.+.|+..|.|.+|++.+|-...++   +.|.++|+.++...-++.+++++.+|.+++||..+....          ..
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~----------~~  530 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK----------KS  530 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee----------ee
Confidence            99999999999999999999888888   699999999999988899999999999999999875311          11


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ......+..+..+.....++++..+-.|.++|..+.+....+.+|.+.|++++|||||++|++++.|++||+||+.
T Consensus       531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence            2344567888888899999999999999999999998888888999999999999999999999999999999973

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-32  Score=224.61  Aligned_cols=289  Identities=15%  Similarity=0.239  Sum_probs=234.6

Q ss_pred             hhccccCCCcceeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           16 QLSRLKNNSETIKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      .+..|.||.+.|.|+|= .|.. ..++||+.||.++|||.....                                    
T Consensus        58 Fv~~L~gHrdGV~~lak-hp~~ls~~aSGs~DG~VkiWnlsqR~------------------------------------  100 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAK-HPNKLSTVASGSCDGEVKIWNLSQRE------------------------------------  100 (433)
T ss_pred             chhhccccccccchhhc-CcchhhhhhccccCceEEEEehhhhh------------------------------------
Confidence            36789999999999999 6665 788888888888888876541                                    


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                                  +..+++.|.+.|..|++..  ..+++++.|.+|+.|
T Consensus       101 --------------------------------------------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen  101 --------------------------------------------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             --------------------------------------------hhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence                                                        5567789999999999986  678999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE-E
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-S  253 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~  253 (458)
                      .++..    ....+.....+..+.-+ ..+..+++++.  .|.|||.....++..+....  ..+.++.|+|....++ +
T Consensus       135 k~~~~----p~~tilg~s~~~gIdh~-~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  135 KIDGP----PLHTILGKSVYLGIDHH-RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILAS  205 (433)
T ss_pred             eccCC----cceeeeccccccccccc-cccccccccCc--eeeecccccCCccceeecCC--CceeEEecCCCcchheee
Confidence            98763    22344555667777665 55677888876  59999999999988888766  5799999999887554 4


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cceeeeee
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWP  332 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~  332 (458)
                      ++.|             +.|.+||+++..++..+.+...   -+.++|+|++-.|++|++|..++.||++. ..++..+.
T Consensus       206 ~~sD-------------rsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  206 CASD-------------RSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             eccC-------------CceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence            4466             4999999999999988765544   47899999888889999999999999987 56788889


Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      +|.+.|..+.|+|.|+-+++||.|.+|+||..+.+...-        ......-..|.++.||.|.+|+++|+.|+.|++
T Consensus       270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             ccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--------hhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence            999999999999999999999999999999998642210        000111235899999999999999999999999


Q ss_pred             EEccCCCc
Q 012699          413 YQVRGHAS  420 (458)
Q Consensus       413 ~~~~~~~~  420 (458)
                      |.....+.
T Consensus       342 Wka~Asek  349 (433)
T KOG0268|consen  342 WKAKASEK  349 (433)
T ss_pred             eecchhhh
Confidence            98875543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=4.7e-31  Score=220.61  Aligned_cols=284  Identities=17%  Similarity=0.259  Sum_probs=240.8

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      ..+.++...|....+++|+.|.++.++|...++...  ....|...|..+.|+ ++...+++++.|..|++|........
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~Gh~kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLKGHTKKITSVKFH-KDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--hccCcceEEEEEEec-cchhheeecCCcceEEeeccccccCc
Confidence            468888888887889999999999999998887654  345567789999999 77888999999999999998877765


Q ss_pred             eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      .....++  .+|+.+..+|.|.++++++.+             |+..+.|++++..+.....+...-.+++.+|+|||..
T Consensus       297 ~~~~~h~--~~V~~ls~h~tgeYllsAs~d-------------~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi  361 (506)
T KOG0289|consen  297 TSSRPHE--EPVTGLSLHPTGEYLLSASND-------------GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI  361 (506)
T ss_pred             ccccccc--ccceeeeeccCCcEEEEecCC-------------ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE
Confidence            5555555  789999999999999999998             5999999999999888765444456999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      |.+|..||.|++||+.++..+..|.+|.++|..++|+.+|.+|+++++|+.|++||++..+...      .+..  ....
T Consensus       362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k------t~~l--~~~~  433 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK------TIQL--DEKK  433 (506)
T ss_pred             EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc------eeec--cccc
Confidence            9999999999999999999999999999999999999999999999999999999999764322      1111  2233


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccC--CCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRG--HASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .+.++.|.+.|++|+.++.+=+|++++-.+  ......+..|.+..+.+.|....++++++|.|..++++.+
T Consensus       434 ~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  434 EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            689999999999999998887777776443  3344555578889999999999999999999999999876

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.9e-32  Score=226.42  Aligned_cols=287  Identities=16%  Similarity=0.257  Sum_probs=237.2

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ...|..|...+..+.| -++...|++|+.|..|++|+...+..- .+..++- ..+....+.+..++..+++.+.|+.++
T Consensus       168 ~~~ld~h~gev~~v~~-l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLaG-s~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEF-LRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLAG-SLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhccccccceeEE-ccCcchhhhcchhhhhhhhhcccchhh-hhhhhhc-cCCCcceeeecCCCceEEeecCCCcee
Confidence            4577789999999999 999999999999999999999877621 1111110 012233466777788999999999999


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                      +|++....                                  ...+|.||++.|+++.|......+++|+.|.+|++||+
T Consensus       245 ~Wnvd~~r----------------------------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  245 LWNVDSLR----------------------------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             eeeccchh----------------------------------hhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            99987644                                  66789999999999999987777999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      ....+..   .......+..+...   ...+++|-.|+.|++||+++.........+   +.|+++..++++..+.+.+.
T Consensus       291 ~k~~C~k---t~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---g~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  291 QKAYCSK---TVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG---GRVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             hhhheec---cccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecC---cceeeEeeccCCeEEeeecC
Confidence            8876653   33344555666654   566899999999999999999998888776   58999999999999999988


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCC--CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED--PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      |.             ++.+.|+++.+....+.-.+.  ....+.+.|||++.|+++|+.||.|+||++.++++...+...
T Consensus       362 Dd-------------tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  362 DD-------------TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             CC-------------ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence            85             999999999888877754332  234788999999999999999999999999999998888765


Q ss_pred             CCC--eEEEEEcCCCCEEEEecCCCeEEEE
Q 012699          335 DSA--ISSILFGPDETSIFSLGSDGKIIEW  362 (458)
Q Consensus       335 ~~~--v~~~~~~~~~~~l~~~~~dg~i~iw  362 (458)
                      ...  |++++|+|.|..|++++.++.+.+|
T Consensus       429 ~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  429 TSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            554  9999999999999999999999999

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-30  Score=206.85  Aligned_cols=283  Identities=16%  Similarity=0.216  Sum_probs=224.3

Q ss_pred             cCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699          145 GHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA  223 (458)
Q Consensus       145 ~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~  223 (458)
                      .-.+.|.+++||| ...+++.+|.|++||+|++.............+.++|.+++|+ .++..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-cCCceEEeeccCCceEEEEccC
Confidence            3467799999999 4556678999999999999874332234566788999999999 8899999999999999999999


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      ++.. .+..|.  .+|..+.|-+...  .|++|+.|.             +|+.||++...++..+.+++   .+.++..
T Consensus       104 ~Q~~-~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDK-------------TlKfWD~R~~~pv~t~~LPe---RvYa~Dv  164 (347)
T KOG0647|consen  104 GQVS-QVAAHD--APVKTCHWVPGMNYQCLVTGSWDK-------------TLKFWDTRSSNPVATLQLPE---RVYAADV  164 (347)
T ss_pred             CCee-eeeecc--cceeEEEEecCCCcceeEeccccc-------------ceeecccCCCCeeeeeeccc---eeeehhc
Confidence            9654 444444  7899999987766  899999996             99999999999988887654   3555543


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeee-e-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC-CeeEEeecCCc
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITG-W-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ-GQVLWTRNCSR  378 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~  378 (458)
                        ....++++..++.|.+|+++++..... . ..-.-.++|++..++.+..+.|+-+|.+.+..+... .......+|++
T Consensus       165 --~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR  242 (347)
T KOG0647|consen  165 --LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR  242 (347)
T ss_pred             --cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence              345788899999999999976533221 1 122346899999998888899999999999999874 23334456666


Q ss_pred             ccCCCC-CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE-ecCC
Q 012699          379 FCDPES-SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT-GSAD  449 (458)
Q Consensus       379 ~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d  449 (458)
                      ...... .-..|++++|+|.-..|+++++||+..+||-+...++.....|..+|++.+|+.+|.++|- .|.|
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            544322 2457889999999999999999999999999998888777889999999999999997774 3444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.4e-30  Score=217.20  Aligned_cols=293  Identities=16%  Similarity=0.205  Sum_probs=240.5

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC----c----------cc-c-ccCCCceEEEEEecCC
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS----R----------NA-T-IYCGTEIMSLEWECKS  203 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~----------~~-~-~~~~~~v~~~~~~~~~  203 (458)
                      ...+..|.-+|.+++++|+.++.++++.|++|.-|++.++....    .          .. . ..|...+.+++.+ ++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS-~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS-SD  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc-CC
Confidence            45677899999999999999999999999999999988776320    0          00 0 1455679999999 89


Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      +.+|++|+.|..|.||+.++.+.+..+..+.  ..|.+++|-.....+++++.|+             .+++|++.....
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~gt~~lys~s~Dr-------------svkvw~~~~~s~  278 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRKGTSELYSASADR-------------SVKVWSIDQLSY  278 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccc--cceeeeeeecCccceeeeecCC-------------ceEEEehhHhHH
Confidence            9999999999999999999999998877766  7899999999999999999996             999999998777


Q ss_pred             eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      +.++  .+|+..|..+.....++.+-+|+.|+++++|++.. +....+.+|.+.+.|++|-.+ ..+++|+++|.|.+|+
T Consensus       279 vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  279 VETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWS  354 (479)
T ss_pred             HHHH--hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEee
Confidence            7665  48889999999888888888999999999999954 334456788999999999654 5899999999999999


Q ss_pred             ccCCCeeEEeecCCcccCC---CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEEC
Q 012699          364 LQNQGQVLWTRNCSRFCDP---ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWH  437 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~  437 (458)
                      +.+.+.+......+.....   ...+.+|++++..|...++++|+.+|.|++|.+..+.....+.   .-.+.|++++|+
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~  434 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFS  434 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEc
Confidence            9987776665554444333   2334599999999999999999999999999999884433332   567899999999


Q ss_pred             CCCCeEEE-ecCCCcE
Q 012699          438 PTLPMFLT-GSADHSV  452 (458)
Q Consensus       438 ~~~~~l~s-~~~dg~v  452 (458)
                      ++|+.+++ .+....+
T Consensus       435 ~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  435 NSGKRIVAGIGKEHRL  450 (479)
T ss_pred             cCCCEEEEeccccccc
Confidence            99995554 4444333

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.4e-29  Score=190.60  Aligned_cols=255  Identities=20%  Similarity=0.308  Sum_probs=203.2

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEec---CCCeEEEEEcC-C
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWEC---KSDRLLLIGTA-D  213 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~-d  213 (458)
                      +.-+.|.+.|+|.+|+|+|++|++|+.|.+|++..++...+..   ......|.+.|..++|-.   ..+.+|++++. |
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            3445799999999999999999999999999998765443321   122344678899999962   23456666554 6


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC-
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED-  292 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~-  292 (458)
                      ..|++-|...|+..+.+..+.  +-|.++ ++-++-++++++.|.             +|++||++-..++..+...-| 
T Consensus       163 c~iy~tdc~~g~~~~a~sght--ghilal-yswn~~m~~sgsqdk-------------tirfwdlrv~~~v~~l~~~~~~  226 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHT--GHILAL-YSWNGAMFASGSQDK-------------TIRFWDLRVNSCVNTLDNDFHD  226 (350)
T ss_pred             ceEEEeecCCCCcceeecCCc--ccEEEE-EEecCcEEEccCCCc-------------eEEEEeeeccceeeeccCcccC
Confidence            678888888998888877765  445554 455788899999885             999999998888877654333 


Q ss_pred             ----CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          293 ----PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       293 ----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                          ...|.+++..|.|++|++|..|....+||++.++.++.+..|...|+++.|+|...++++++.|..|++-|+...-
T Consensus       227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence                2568999999999999999999999999999999999999999999999999999999999999999999987420


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                                     .+                                ...+.....|++.+..+.|+|..--+++.+.
T Consensus       307 ---------------a~--------------------------------el~~~vv~ehkdk~i~~rwh~~d~sfisssa  339 (350)
T KOG0641|consen  307 ---------------AH--------------------------------ELPIMVVAEHKDKAIQCRWHPQDFSFISSSA  339 (350)
T ss_pred             ---------------hh--------------------------------cCceEEEEeccCceEEEEecCccceeeeccC
Confidence                           00                                0011222247788899999999999999999


Q ss_pred             CCcEEEEeCC
Q 012699          449 DHSVQVMSLS  458 (458)
Q Consensus       449 dg~v~iw~l~  458 (458)
                      |.++.+|-++
T Consensus       340 dkt~tlwa~~  349 (350)
T KOG0641|consen  340 DKTATLWALN  349 (350)
T ss_pred             cceEEEeccC
Confidence            9999999764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-29  Score=203.81  Aligned_cols=289  Identities=15%  Similarity=0.196  Sum_probs=221.8

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccC--CCcc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSG--NDSI   95 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i   95 (458)
                      +.++.....|+++.| +++|++|++++.|.++.|+|...+.....+....+..+    .+.|.....-++.++.  |.+|
T Consensus         8 k~f~~~~~~i~sl~f-s~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~----~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    8 KVFRETNGKINSLDF-SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD----LACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccCCCceeEEEe-cCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc----EEEEecCCceEEEccCCCCCce
Confidence            345556788999999 99999999999999999999999987766655444444    1222222223333333  5666


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      +.-++....                                  .++.|.||...|+.++.+|-+..+++++.|++|++||
T Consensus        83 ryLsl~dNk----------------------------------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWD  128 (311)
T KOG1446|consen   83 RYLSLHDNK----------------------------------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWD  128 (311)
T ss_pred             EEEEeecCc----------------------------------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeE
Confidence            665554433                                  7889999999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC--ceeeeccCC-CCCCceeeeeecCCCCeEE
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK--RVVCDLNTT-DAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~~  252 (458)
                      ++..++....    +...-..++|+ +.|-++|++.....|++||++.-  .+..++... ........+.|+|+|+.++
T Consensus       129 lR~~~cqg~l----~~~~~pi~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL  203 (311)
T KOG1446|consen  129 LRVKKCQGLL----NLSGRPIAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL  203 (311)
T ss_pred             ecCCCCceEE----ecCCCcceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence            9977665321    12223456788 77888898888889999999863  344444433 3346788999999999988


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc-EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      .+...             +.+.+.|.-+|.....+........ -...+|.||++++++|+.||+|.+|+++++..+..+
T Consensus       204 lsT~~-------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  204 LSTNA-------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             EEeCC-------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence            88776             4999999999998888865544332 256789999999999999999999999999999999


Q ss_pred             eC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          332 PA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       332 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      ++ +.+++.++.|+|.-.+++++  +..+.+|=..
T Consensus       271 ~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  271 RGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             cCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence            98 68999999999987667665  4568888654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=9e-29  Score=210.92  Aligned_cols=394  Identities=13%  Similarity=0.141  Sum_probs=278.2

Q ss_pred             HHHhhccccCCCcceeeeeeccCCCceeeeeecCc--------ceEEeccccccccc-------cceeeeeccCCceeee
Q 012699           13 KEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEE--------SLLLSTNSSEACAT-------TATHMGSAEMGQTWAS   77 (458)
Q Consensus        13 ~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~--------~~~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~   77 (458)
                      .|...+.+.||+..|.|+++ .||.-.+++|-..+        .++|||..+-....       .+.++++++.      
T Consensus        93 ee~~Qr~y~GH~ddikc~~v-HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~------  165 (626)
T KOG2106|consen   93 EERSQRHYLGHNDDIKCMAV-HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKI------  165 (626)
T ss_pred             hhhhcccccCCCCceEEEee-cCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeeccc------
Confidence            44456788899999999999 99999999876665        47899955443331       1223333332      


Q ss_pred             eCCccceeEee--ccCCCcccccccccccCCcccceeee----ccCCCCcCCCcceeccCCCeeee---------eeeee
Q 012699           78 SRPALSRFATN--MSGNDSISPSKLEFEDVGAGDIIQMF----NDGLYTENGRDAQGEEDFPEVKV---------DFLET  142 (458)
Q Consensus        78 ~~~~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~  142 (458)
                         ..+.++..  -+.+.-+.+|+++....  ...++..    -...|.|.+.-+......+-+.+         +....
T Consensus       166 ---~~G~~l~~vD~s~~h~lSVWdWqk~~~--~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~  240 (626)
T KOG2106|consen  166 ---NGGSLLCAVDDSNPHMLSVWDWQKKAK--LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGI  240 (626)
T ss_pred             ---CCCceEEEecCCCccccchhhchhhhc--cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeec
Confidence               12222222  23455678888765331  1112222    23347777665444333332222         33444


Q ss_pred             eccC-CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          143 FLGH-TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       143 ~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      ++++ ..-|.|++|.++|. ++||..+|.|.||+..+.+...  ....|.+.|.+++.. .++. |++|+.|..|..|| 
T Consensus       241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k--~~~aH~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd-  314 (626)
T KOG2106|consen  241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK--QVHAHDGGVFSLCML-RDGT-LLSGGKDRKIILWD-  314 (626)
T ss_pred             cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe--EeeecCCceEEEEEe-cCcc-EeecCccceEEecc-
Confidence            5544 36699999999986 7799999999999986665443  233788999999987 5554 66699999999999 


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      ..-+.++..+.++..++++.++-...+  ++.+...             +.|-.=.++++-.+..+   +|......++.
T Consensus       315 ~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtr-------------N~iL~Gt~~~~f~~~v~---gh~delwgla~  376 (626)
T KOG2106|consen  315 DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTR-------------NFILQGTLENGFTLTVQ---GHGDELWGLAT  376 (626)
T ss_pred             ccccccccccCchhcCCeeEEecCCCc--EEEeecc-------------ceEEEeeecCCceEEEE---ecccceeeEEc
Confidence            445555666777777788877655444  4444433             25554455544433333   56667899999


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      +|+...+++++.|+.+++|+  ..+++.+.. -..++.|+.|+|.| .++.|+..|...+.|.++...+. ..       
T Consensus       377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~-------  444 (626)
T KOG2106|consen  377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IH-------  444 (626)
T ss_pred             CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EE-------
Confidence            99999999999999999999  445544433 36789999999999 99999999999999999843332 21       


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                        ....+++.++|+|+|.+||+|+.|+.|+||.+..........  -|..+|+.+.|++|+++|.+-+.|-.|..|.
T Consensus       445 --~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  445 --TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             --ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence              225678999999999999999999999999998776555444  2458999999999999999999999999994

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=5.4e-30  Score=215.98  Aligned_cols=293  Identities=12%  Similarity=0.146  Sum_probs=234.4

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      .++|+++.|+|..+.|++|+.|++++||.++...............+|.+.+|.|.+...+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            57899999999999999999999999999987665544444445679999999965555999999999999999998876


Q ss_pred             eeeccCCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          227 VCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       227 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ...-..... ...+....+++++++++..+..             |.|.+....+++.+..++++   +.|..++|+.++
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-------------G~I~lLhakT~eli~s~Kie---G~v~~~~fsSds  356 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-------------GHIHLLHAKTKELITSFKIE---GVVSDFTFSSDS  356 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccC-------------ceEEeehhhhhhhhheeeec---cEEeeEEEecCC
Confidence            443222211 2467788999999999999888             69999999999999998765   459999999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCC-CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES  384 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  384 (458)
                      +.|++.+.+|.|++||++...+++++....+ .-++++.++++.+||+|+..|.|.|||..+.....   ..........
T Consensus       357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~dN  433 (514)
T KOG2055|consen  357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTVDN  433 (514)
T ss_pred             cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhhhh
Confidence            9999999999999999999999988875322 23567778999999999999999999976432111   1112223334


Q ss_pred             CCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          385 SKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       385 ~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ....|+.++|+||++.||.++.  .+.+++-.+.+......+.   ..-+.|+|++|+|.+.+||.|..+|.|.+|.|.
T Consensus       434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            5567999999999999999886  5789998887764433333   234679999999999999999999999999873

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=7.9e-31  Score=229.99  Aligned_cols=354  Identities=15%  Similarity=0.210  Sum_probs=271.5

Q ss_pred             CCCccee---eeeeccCCCceeeeeecCcceEEeccccccc------c-ccceeeeeccCCceeeeeCCccceeEeeccC
Q 012699           22 NNSETIK---YANIGQTKNSTLASGVNEESLLLSTNSSEAC------A-TTATHMGSAEMGQTWASSRPALSRFATNMSG   91 (458)
Q Consensus        22 ~h~~~i~---~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (458)
                      .|...|+   .+...-+.++||.||+.|+.|++|+.....-      + ....|..|++|     +..-..++-++++|.
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND-----iiL~~~~~tlIS~Ss   93 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND-----IILCGNGKTLISASS   93 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh-----HHhhcCCCceEEecC
Confidence            3666676   6666667888999999999999999865432      2 33348899999     555556778999999


Q ss_pred             CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEe-CCCCCEEEEEeCCCc
Q 012699           92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRF-SSSGNNIASASVDGT  170 (458)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~  170 (458)
                      |-++++|+.....                                ..+..+++.|.+.|.|+++ .++...+|+||-|+.
T Consensus        94 DtTVK~W~~~~~~--------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~  141 (735)
T KOG0308|consen   94 DTTVKVWNAHKDN--------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK  141 (735)
T ss_pred             CceEEEeecccCc--------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence            9999999975421                                0166788899999999999 788889999999999


Q ss_pred             EEEEecCCCCC--C------Cccccc-cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699          171 VRIWTYDSSTP--A------SRNATI-YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       171 v~iwd~~~~~~--~------~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  241 (458)
                      |.+||++++..  .      ...... .+..+|++++.+ +.+..+++|+..+.|++||.++++.+..++.|.  ..|..
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT--dNVr~  218 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT--DNVRV  218 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceEEeccccccceeeeeccc--cceEE
Confidence            99999987632  1      111111 455789999998 778899999999999999999999888888665  68999


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEe
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD  321 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  321 (458)
                      +..+++|..+++++.|             |+|++||+...+++.++.  .|...|.++..+|+-.++++|+.||.|+.=|
T Consensus       219 ll~~dDGt~~ls~sSD-------------gtIrlWdLgqQrCl~T~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  219 LLVNDDGTRLLSASSD-------------GTIRLWDLGQQRCLATYI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             EEEcCCCCeEeecCCC-------------ceEEeeeccccceeeeEE--eccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence            9999999999999999             699999999999988875  5667799999999999999999999999999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL  401 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  401 (458)
                      +++......+-....+|..+..+.+.+.+-+++.|+.|+-|-..-.                        ..+++.|.+.
T Consensus       284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~------------------------~~l~~s~~~~  339 (735)
T KOG0308|consen  284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD------------------------IALSVSGDLD  339 (735)
T ss_pred             cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc------------------------cccccCCCCC
Confidence            9985444444445678888888766666678889999999987632                        2445555554


Q ss_pred             EEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          402 LVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       402 ~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      . -+.+......+...  .+........++...+.-.|.+.++|=...|.+.+||+
T Consensus       340 ~-~~T~~~~~~~~~~~--tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDI  392 (735)
T KOG0308|consen  340 F-FSTDSNNHSCDLTN--TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDI  392 (735)
T ss_pred             c-ccccCCCccccccC--CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence            4 33333334444322  11111222345666666778889999999999999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=5.2e-30  Score=216.08  Aligned_cols=299  Identities=16%  Similarity=0.223  Sum_probs=234.9

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ++.+..|.-+|.|+++ ++|+++..+++.+++|.-|+..++.....+                                 
T Consensus       135 ~~~~~~H~~s~~~val-s~d~~~~fsask~g~i~kw~v~tgk~~~~i---------------------------------  180 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVAL-SPDDKRVFSASKDGTILKWDVLTGKKDRYI---------------------------------  180 (479)
T ss_pred             ceeeccccCcceEEEe-eccccceeecCCCcceeeeehhcCcccccc---------------------------------
Confidence            6778889999999999 999999999999999999998887422000                                 


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                       |.-..       .. ..                ...  .++.- . ++|...|.+++.+|||++||+|+.|..|.||+.
T Consensus       181 -~~~~e-------v~-k~----------------~~~--~~k~~-r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~  231 (479)
T KOG0299|consen  181 -IERDE-------VL-KS----------------HGN--PLKES-R-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDC  231 (479)
T ss_pred             -cccch-------hh-hh----------------ccC--CCCcc-c-ccccceeEEEEEcCCCcEEEecCCCceEEEecC
Confidence             00000       00 00                000  00011 1 389999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      ++.+.+.  ....|...|.+++|- .+...+++++.|+.+++|+++....+.++..|+  ..|..+.....++.+.+++.
T Consensus       232 ~t~ehv~--~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq--d~v~~IdaL~reR~vtVGgr  306 (479)
T KOG0299|consen  232 DTLEHVK--VFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQ--DGVLGIDALSRERCVTVGGR  306 (479)
T ss_pred             cccchhh--cccccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCc--cceeeechhcccceEEeccc
Confidence            9988764  356678999999998 788889999999999999999988888887776  67999999888888888888


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CC-
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AH-  334 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~-  334 (458)
                      |+             ++++|++.... ...  +.++.+.+-|++|-.+ ..|++|+.+|.|.+|++.+.+++.+.+ +| 
T Consensus       307 Dr-------------T~rlwKi~ees-qli--frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  307 DR-------------TVRLWKIPEES-QLI--FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             cc-------------eeEEEeccccc-eee--eeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccc
Confidence            85             99999995422 222  3466678999999755 479999999999999999988887654 22 


Q ss_pred             ----------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699          335 ----------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT  404 (458)
Q Consensus       335 ----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  404 (458)
                                ...|++++..|..+++++|+.+|.|++|-+..+-..+      .+.......+.|++++|+++|+.+++|
T Consensus       370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i------~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI------NLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc------ceeeecccccEEEEEEEccCCCEEEEe
Confidence                      1278999999999999999999999999999774332      122222466789999999999988777


Q ss_pred             eC
Q 012699          405 SG  406 (458)
Q Consensus       405 ~~  406 (458)
                      .+
T Consensus       444 iG  445 (479)
T KOG0299|consen  444 IG  445 (479)
T ss_pred             cc
Confidence            54

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.98  E-value=5.5e-30  Score=237.97  Aligned_cols=256  Identities=18%  Similarity=0.290  Sum_probs=210.1

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC--CC--------------CCccccccCCCceEEEEEecC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS--TP--------------ASRNATIYCGTEIMSLEWECK  202 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~--------------~~~~~~~~~~~~v~~~~~~~~  202 (458)
                      .+.+...|.+.|+|+.|+|||++||+|++|+.|.||.....  ..              ........|...|..++|+ +
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p  139 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-P  139 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-C
Confidence            44566789999999999999999999999999999998730  00              0112334578899999999 5


Q ss_pred             CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699          203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~  282 (458)
                      ++.+|++++.|++|.+||..+.+.+..+..|.  +.|..+.|.|-|+++++.+.|+             +|++|++.+..
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~--s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~  204 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ--SLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWG  204 (942)
T ss_pred             CccEEEEecccceEEEEccccceeeeeeeccc--ccccceEECCccCeeeeecCCc-------------eEEEEEcccce
Confidence            89999999999999999999998888888876  7899999999999999999996             99999988877


Q ss_pred             eeEEeecC----CCCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-----CCC-
Q 012699          283 AMTVLPLG----EDPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQITGWPAHDSAISSILFGP-----DET-  348 (458)
Q Consensus       283 ~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~~-  348 (458)
                      ..+.++-.    .....+..+.|||||.+|++...    -..+.|.+-.+.+.-..+-+|.+++.+++|+|     ..+ 
T Consensus       205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n  284 (942)
T KOG0973|consen  205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN  284 (942)
T ss_pred             eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence            76665421    11235788999999999998643    24788999888888888999999999999998     111 


Q ss_pred             -----------EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          349 -----------SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       349 -----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                                 .+|+|+.|+.|.||.....++...        ..+-....|..++|+|||-.|++++.||+|.+..++.
T Consensus       285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v--------i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV--------IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CCccCCCcceEEEEEecCCccEEEEecCCCCchhh--------hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                       578999999999999876544321        2223566799999999999999999999999999874


Q ss_pred             C
Q 012699          418 H  418 (458)
Q Consensus       418 ~  418 (458)
                      .
T Consensus       357 ~  357 (942)
T KOG0973|consen  357 K  357 (942)
T ss_pred             H
Confidence            3

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=8.3e-30  Score=216.47  Aligned_cols=278  Identities=16%  Similarity=0.256  Sum_probs=225.4

Q ss_pred             CCCCeEEEEeCCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          146 HTSPISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      ..+.|.+++|+|...+ +|+.+ .-.+.||+..+.....  ........+.++.|. .+|.++++|...|.|+++|..+.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFR-SDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh--hHHhhccceeEEEee-cCCeEEEccCCcCcEEEeccccH
Confidence            3468999999996544 44433 3579999987765543  233446778999998 89999999999999999997776


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      ..+..+..+.  .++....|+|++..+++.+.|+            +.+++||+.+...  ...+.+|.+.|.|.+|+|.
T Consensus       101 ~iLR~~~ah~--apv~~~~f~~~d~t~l~s~sDd------------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~  164 (487)
T KOG0310|consen  101 VILRQLYAHQ--APVHVTKFSPQDNTMLVSGSDD------------KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPA  164 (487)
T ss_pred             HHHHHHhhcc--CceeEEEecccCCeEEEecCCC------------ceEEEEEcCCcEE--EEEecCCcceeEeeccccC
Confidence            6677777766  7899999999888766665555            5999999998775  4556799999999999995


Q ss_pred             -CCEEEEEecCCeEEEEeCCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699          305 -GKILAASAVDGMIHMFDMSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       305 -~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  382 (458)
                       +..+++|+.||.|++||++.. ..+..+ .|..+|..+.+-|.|..+++++.. .+++||+.++.+...        ..
T Consensus       165 ~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~--------~~  234 (487)
T KOG0310|consen  165 NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLT--------SM  234 (487)
T ss_pred             CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehh--------hh
Confidence             558899999999999999986 555555 589999999999999999988754 799999997765432        22


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      ..|...|+++.+..++..|++++-|+.+++||+.+.+ ...-....++|.+++.+|+++.++.|..||.+.+
T Consensus       235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             hcccceEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            3488889999999999999999999999999976553 3333456789999999999999999999998765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.3e-28  Score=213.44  Aligned_cols=402  Identities=14%  Similarity=0.126  Sum_probs=283.2

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEecccccccc---------ccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA---------TTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      -+.+|.|+|| +.+...||.+..|+.|.||+.....+.         ..+.+++|++.            ..|.+.+.+|
T Consensus        24 ~Ps~I~slA~-s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~------------~RLFS~g~sg   90 (691)
T KOG2048|consen   24 KPSEIVSLAY-SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG------------GRLFSSGLSG   90 (691)
T ss_pred             eccceEEEEE-eccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC------------CeEEeecCCc
Confidence            4677999999 888888999999999999999877665         34445666633            4567777889


Q ss_pred             cccccccccccCCc--ccceeeeccCCCCcCCCcceeccCCCeeee--------eeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699           94 SISPSKLEFEDVGA--GDIIQMFNDGLYTENGRDAQGEEDFPEVKV--------DFLETFLGHTSPISCCRFSSSGNNIA  163 (458)
Q Consensus        94 ~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~  163 (458)
                      +|.-||+.......  .........++.+|.+..++.+-+++.+..        +..+.|...+++|.+++|+|++..|+
T Consensus        91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~  170 (691)
T KOG2048|consen   91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA  170 (691)
T ss_pred             eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE
Confidence            99999986533111  111112245566788888877766664433        34455666789999999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCCCcc-----cccc-CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          164 SASVDGTVRIWTYDSSTPASRN-----ATIY-CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       164 s~~~dg~v~iwd~~~~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      +|+.||.|++||...+......     .... ...-|+++.|-  ....|++|...|+|.+||...+.++..+..+.  .
T Consensus       171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--a  246 (691)
T KOG2048|consen  171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD--A  246 (691)
T ss_pred             ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhh--c
Confidence            9999999999999887654311     1111 22347788876  45579999999999999999999999888877  6


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--eEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--MTVLPLGEDPPAITSLCFNHNGKILAASAVDG  315 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  315 (458)
                      .|.+++..+++..+++++.|+             .+..|...+.+.  +.......|...+.+++..++  .+++|+.|.
T Consensus       247 dVl~Lav~~~~d~vfsaGvd~-------------~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~  311 (691)
T KOG2048|consen  247 DVLALAVADNEDRVFSAGVDP-------------KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDF  311 (691)
T ss_pred             ceeEEEEcCCCCeEEEccCCC-------------ceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceee
Confidence            899999999999999999985             676666655433  222223456667888888866  778888887


Q ss_pred             eEEEEeCCCCc-----------------------eeeee----------------------------eCCCCCeEEEEEc
Q 012699          316 MIHMFDMSAGL-----------------------QITGW----------------------------PAHDSAISSILFG  344 (458)
Q Consensus       316 ~i~v~d~~~~~-----------------------~~~~~----------------------------~~~~~~v~~~~~~  344 (458)
                      .+.+-..+..+                       .+..+                            ......|.+.+.+
T Consensus       312 ~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiS  391 (691)
T KOG2048|consen  312 TLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAIS  391 (691)
T ss_pred             EEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccC
Confidence            77665433200                       00000                            1123468889999


Q ss_pred             CCCCEEEEecCCCeEEEEeccCCCee----------------------------E--------Eee--cC-----CcccC
Q 012699          345 PDETSIFSLGSDGKIIEWSLQNQGQV----------------------------L--------WTR--NC-----SRFCD  381 (458)
Q Consensus       345 ~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------~--------~~~--~~-----~~~~~  381 (458)
                      |+|++++.+.- ..+++|.+......                            +        ...  ..     .....
T Consensus       392 Pdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~  470 (691)
T KOG2048|consen  392 PDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQ  470 (691)
T ss_pred             CCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccc
Confidence            99999887763 23455544421000                            0        000  00     00011


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC-CCeEEEecCCCcEEEEeC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT-LPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~l  457 (458)
                      +......|..+..||+|++||+.+..+.|++|++++.+.......-...|+.++|+|. .+.|+.+..|+.|.-||+
T Consensus       471 ~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi  547 (691)
T KOG2048|consen  471 SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI  547 (691)
T ss_pred             cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence            2235567899999999999999999999999999987654443344588999999965 458888899999998887

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.7e-30  Score=216.65  Aligned_cols=294  Identities=15%  Similarity=0.228  Sum_probs=230.0

Q ss_pred             HHHHHHhhccccCCCcceeeeeeccCCCce--eeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEe
Q 012699           10 LEEKEAQLSRLKNNSETIKYANIGQTKNST--LASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFAT   87 (458)
Q Consensus        10 ~~~~~~~~~~l~~h~~~i~~~~~~s~~~~~--l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (458)
                      +++.++....... .+.|+.++| +|...+  .+++|  -.+.|++..+......+..+.    .....+.+..++++++
T Consensus        13 ~w~~~~~~~~~ke-~~~vssl~f-sp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk----~~v~s~~fR~DG~Lla   84 (487)
T KOG0310|consen   13 YWRQETFPPVHKE-HNSVSSLCF-SPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFK----DVVYSVDFRSDGRLLA   84 (487)
T ss_pred             hhhhhcccccccc-cCcceeEec-CCCCCCceEEecc--cEEEEEecchhhhhhhHHhhc----cceeEEEeecCCeEEE
Confidence            3444433333333 456999999 886654  44444  667777776655443222221    1123366777899999


Q ss_pred             eccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEe
Q 012699           88 NMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASAS  166 (458)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~  166 (458)
                      .|...|.++++|+..+.                                  .++.+.+|+.+|..+.|+|+ +..+++|+
T Consensus        85 aGD~sG~V~vfD~k~r~----------------------------------iLR~~~ah~apv~~~~f~~~d~t~l~s~s  130 (487)
T KOG0310|consen   85 AGDESGHVKVFDMKSRV----------------------------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGS  130 (487)
T ss_pred             ccCCcCcEEEeccccHH----------------------------------HHHHHhhccCceeEEEecccCCeEEEecC
Confidence            99999999999954422                                  56678899999999999995 56688899


Q ss_pred             CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccCCCCCCceeeeeec
Q 012699          167 VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       167 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      .|+.+++||+.+...  ......|..-|.+.+|+|.++.++++|+.||.|++||+++. ..+.++..   ..+|..+.+.
T Consensus       131 Dd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh---g~pVe~vl~l  205 (487)
T KOG0310|consen  131 DDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH---GCPVESVLAL  205 (487)
T ss_pred             CCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC---CCceeeEEEc
Confidence            999999999988763  33556678899999999999999999999999999999987 44444443   3689999999


Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG  325 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  325 (458)
                      |.|..+++++.+              .+++||+.++....... ..|...|+|+++..++..|++|+-|+.+++||+.+-
T Consensus       206 psgs~iasAgGn--------------~vkVWDl~~G~qll~~~-~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  206 PSGSLIASAGGN--------------SVKVWDLTTGGQLLTSM-FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CCCCEEEEcCCC--------------eEEEEEecCCceehhhh-hcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            999999999986              99999999766554443 247789999999999999999999999999998888


Q ss_pred             ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       326 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      +.+..+. -.++|.+++.+|++..++.|..||.+.+=+...
T Consensus       271 Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  271 KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            8888876 478999999999999999999999887765443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.97  E-value=3.2e-28  Score=207.56  Aligned_cols=410  Identities=13%  Similarity=0.116  Sum_probs=283.6

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecC---cceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNE---ESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d---~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ..|..-...|+|++|...++.-++..-+|   ..+.+|+.+.+...+++..   +++ ..++..|-+....++.....+.
T Consensus       148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~---sne-~v~~a~FHPtd~nliit~Gk~H  223 (626)
T KOG2106|consen  148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT---SNE-VVFLATFHPTDPNLIITCGKGH  223 (626)
T ss_pred             eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee---ccc-eEEEEEeccCCCcEEEEeCCce
Confidence            34445566799999955555555554444   4456788877766555442   222 2233444444444444555678


Q ss_pred             ccccccccccCC------cccceeeeccCCCCcCCCcceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEE
Q 012699           95 ISPSKLEFEDVG------AGDIIQMFNDGLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNI  162 (458)
Q Consensus        95 i~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l  162 (458)
                      +.+|+++.....      ..+..+...++.|.++|..+ ++...+.+.+      +..+....|.+.|.+++.-.+|.+ 
T Consensus       224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-  301 (626)
T KOG2106|consen  224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-  301 (626)
T ss_pred             EEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-
Confidence            888877643210      00111455677888888755 4445555554      344444599999999999999965 


Q ss_pred             EEEeCCCcEEEEecCCCCCCC---------------------------------------ccccccCCCceEEEEEecCC
Q 012699          163 ASASVDGTVRIWTYDSSTPAS---------------------------------------RNATIYCGTEIMSLEWECKS  203 (458)
Q Consensus       163 ~s~~~dg~v~iwd~~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~~~~~  203 (458)
                      ++|+.|+.|..||-. -+...                                       ......|..+.+.++.+ ++
T Consensus       302 lSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps  379 (626)
T KOG2106|consen  302 LSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PS  379 (626)
T ss_pred             eecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CC
Confidence            559999999999821 11100                                       01122344567777777 66


Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      .+.+++++.|+.+++|+  ..++..+....   .++.++.|+|.+ .++.+...             |...+.|.++...
T Consensus       380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~-------------G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  380 KNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTAT-------------GRWFVLDTETQDL  440 (626)
T ss_pred             hhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeecc-------------ceEEEEeccccee
Confidence            77899999999999999  55555554443   478999999999 88888776             6999999998655


Q ss_pred             eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      +...+ .  ..++++++|+|+|.+||+|+.|+.|++|-+.. +...... +.+..+|+.+.|++|+++|.+-+.|-.|..
T Consensus       441 v~~~~-d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  441 VTIHT-D--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             EEEEe-c--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence            55443 2  56799999999999999999999999999865 3333332 234489999999999999999999999999


Q ss_pred             EeccCCCeeEEeecCC---------cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---cccCCCCC
Q 012699          362 WSLQNQGQVLWTRNCS---------RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---MRTLPHGA  429 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---~~~~~h~~  429 (458)
                      |.....++....+...         -..-...+...+..++-+...+++|+|...|.|++|...-.+..   ....+|..
T Consensus       518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~  597 (626)
T KOG2106|consen  518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS  597 (626)
T ss_pred             EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence            9443322211110000         00011345566777888889999999999999999998654433   33448999


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .|++++|.-+...|++.+.|..|..|++
T Consensus       598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  598 HVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            9999999998888888889999999987

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.8e-29  Score=227.12  Aligned_cols=270  Identities=19%  Similarity=0.233  Sum_probs=203.9

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC----------C-ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA----------S-RNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----------~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      |-..|+....++++..+++++.+.....|+...+...          . ......|...|.+++|+|.++++|++++.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3345566666777666777777777777765433211          0 1123457789999999965788999999999


Q ss_pred             cEEEEEcCCCc-------eeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          215 GIKAWNVDAKR-------VVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       215 ~i~~wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      +|++||+.++.       .+..+..+  ...|.+++|+|++ ..+++++.|             +.|++||+++++....
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH--~~~V~~l~f~P~~~~iLaSgs~D-------------gtVrIWDl~tg~~~~~  163 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGH--TKKVGIVSFHPSAMNVLASAGAD-------------MVVNVWDVERGKAVEV  163 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCC--CCcEEEEEeCcCCCCEEEEEeCC-------------CEEEEEECCCCeEEEE
Confidence            99999997653       33444444  3789999999986 688888888             5999999999887766


Q ss_pred             eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCC-eEEEEEcCCCCEEEEec----CCCeEEE
Q 012699          287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSA-ISSILFGPDETSIFSLG----SDGKIIE  361 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~i  361 (458)
                      +  ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++
T Consensus       164 l--~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        164 I--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML  241 (493)
T ss_pred             E--cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence            5  467788999999999999999999999999999999999999999765 45678999887877654    4799999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccC-CCCCcEEEEEECCC
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPT  439 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~  439 (458)
                      ||+++...+.....       ......+....|++++++|++++ +|+.|++||+..+....... .+..++..++|.|.
T Consensus       242 WDlr~~~~p~~~~~-------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        242 WDTRKMASPYSTVD-------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EeCCCCCCceeEec-------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            99987654332211       11223456678999999999887 59999999998875443322 35567788888885

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.4e-29  Score=223.80  Aligned_cols=281  Identities=15%  Similarity=0.239  Sum_probs=232.7

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-EEEecCCCeEEEEEcCCCcE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWECKSDRLLLIGTADGGI  216 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i  216 (458)
                      +..+.+.||...|..+++.+.. .++++|.||++++|+-...+.........+.+-|.. +++.+.++..+++|+.|.++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            3667889999999999987654 799999999999999877666543344445555555 77775566679999999999


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      .+|...+..+...+..|.  ..|.++....++. +++++.|.             ++++|-.....  ..  +.+|+..|
T Consensus        84 ~v~~~~~~~P~~~LkgH~--snVC~ls~~~~~~-~iSgSWD~-------------TakvW~~~~l~--~~--l~gH~asV  143 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLKGHK--SNVCSLSIGEDGT-LISGSWDS-------------TAKVWRIGELV--YS--LQGHTASV  143 (745)
T ss_pred             EEEecCCCCchhhhhccc--cceeeeecCCcCc-eEeccccc-------------ceEEecchhhh--cc--cCCcchhe
Confidence            999999999999998887  7899999888887 89999995             99999876432  22  56899999


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      .+++.-|++ .+++|+.|.+|++|.-  ++.++++.+|.+.|+.+++-|++ .|++++.||.|++|++.. +.+.     
T Consensus       144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e~l~-----  213 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-EVLL-----  213 (745)
T ss_pred             eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-ceee-----
Confidence            999999988 8899999999999985  78899999999999999998876 688999999999999953 3322     


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                          ...+|...+.++...+++..++++++|++++||+....   .+...|. -.|+++.+-++|. +++|+.||.||||
T Consensus       214 ----~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~---~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  214 ----EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC---VQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             ----eeeccceEEEEEEecCCCCeEEEecCCceEEEeecCce---EEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence                33478888999999999999999999999999999832   3333344 4899999999887 7788999999999


Q ss_pred             eC
Q 012699          456 SL  457 (458)
Q Consensus       456 ~l  457 (458)
                      ..
T Consensus       286 T~  287 (745)
T KOG0301|consen  286 TV  287 (745)
T ss_pred             Ee
Confidence            75

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.4e-30  Score=199.33  Aligned_cols=244  Identities=18%  Similarity=0.317  Sum_probs=202.0

Q ss_pred             CCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          146 HTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       146 h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      -.+.+..++|++. .+.+++++.||++++||+..... .......|..+|.++.|++...+.+++++.|++|++|+...+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence            3567899999996 45688899999999999543332 234556788999999999888999999999999999999999


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  303 (458)
                      +.+.++..+.  ..|....|+|... .+++++.|             |.+++||++.......+  +.|...+.|+.|+.
T Consensus       138 ~Sv~Tf~gh~--~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~i--~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  138 NSVQTFNGHN--SCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMSI--EAHNSEILCCDWSK  200 (311)
T ss_pred             cceEeecCCc--cEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeEE--EeccceeEeecccc
Confidence            9999988866  7899999999654 67777777             69999999876554444  46767899999998


Q ss_pred             -CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          304 -NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       304 -~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                       +...+++|+.|+.|++||+++ ..++..+.+|.-.|+.+.|||. ...|++++.|-+++|||...+.....        
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e--------  272 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE--------  272 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh--------
Confidence             567889999999999999988 5678899999999999999994 45899999999999999986543332        


Q ss_pred             CCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEc
Q 012699          381 DPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~  415 (458)
                      ....|...+..+.||+ ++.++|..+.|+.++||+.
T Consensus       273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccceEEeccccccccCceeeecccccceeeecc
Confidence            2224667788899998 6789999999999999984

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=4.7e-30  Score=219.26  Aligned_cols=312  Identities=16%  Similarity=0.235  Sum_probs=218.6

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-ccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      .+|.+|+..|.++++ -|.|..++||+.|-+++.||++..... ..+..+.-+...+.-.+.++..+..+++.+.....+
T Consensus       161 i~l~hgtk~Vsal~~-Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAV-DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             EeccCCceEEEEeee-cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            478899999999999 999999999999999999998754322 111112222222222233333344444444444455


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEe
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWT  175 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd  175 (458)
                      ++|-+-                     ..+.-....+. -+.-+..-+||...++|.+|+|+. ..++|++.||++||||
T Consensus       240 l~DRdG---------------------~~~~e~~KGDQ-YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd  297 (641)
T KOG0772|consen  240 LLDRDG---------------------FEIVEFSKGDQ-YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD  297 (641)
T ss_pred             EEccCC---------------------ceeeeeeccch-hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence            544221                     11111000000 011334457999999999999964 5689999999999999


Q ss_pred             cCCCCCCCc-ccc---ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee---eeccCCCCCCceeeeeecCCC
Q 012699          176 YDSSTPASR-NAT---IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV---CDLNTTDAFPSVLDLKCSPVE  248 (458)
Q Consensus       176 ~~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~  248 (458)
                      +...+.... ...   ....-++..++|+ +++.++++|+.||.|.+|+..+....   ..-..|.....|+++.|+++|
T Consensus       298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             cCCchhheeEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence            976543211 111   1123468899999 78889999999999999997543321   222334433579999999999


Q ss_pred             CeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEec------CCeEEEEe
Q 012699          249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAV------DGMIHMFD  321 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d  321 (458)
                      ++|++-+.|.             ++++||++..+ ++....--....+-+.++|||+.++|++|+.      .|.+.+||
T Consensus       377 ~~LlSRg~D~-------------tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d  443 (641)
T KOG0772|consen  377 NYLLSRGFDD-------------TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD  443 (641)
T ss_pred             chhhhccCCC-------------ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence            9999999984             99999999754 3333332223345678999999999999864      47899999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      ..+...+..+......|..+.|+|.-+.|+.++.||++++|-=.+
T Consensus       444 ~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  444 RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            999999999888888999999999888999999999999875443

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.7e-28  Score=222.69  Aligned_cols=211  Identities=14%  Similarity=0.196  Sum_probs=169.0

Q ss_pred             eeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          142 TFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+.+....     .......|...|.+++|+|..+++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            3679999999999999 8899999999999999999765321     112234577889999999766789999999999


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-  294 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-  294 (458)
                      |++||+++++....+..+.  ..|.+++|+|++..+++++.|             +.|++||+++++....+.  .|.. 
T Consensus       150 VrIWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~--~H~~~  212 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVE--AHASA  212 (493)
T ss_pred             EEEEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEe--cCCCC
Confidence            9999999998887776654  679999999999999999988             599999999988877664  4433 


Q ss_pred             cEEEEEEccCCCEEEEEe----cCCeEEEEeCCCCc-eeeeeeCC-CCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCC
Q 012699          295 AITSLCFNHNGKILAASA----VDGMIHMFDMSAGL-QITGWPAH-DSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQ  367 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~----~dg~i~v~d~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~  367 (458)
                      ....+.|.+++..+++++    .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.+.
T Consensus       213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            345678888877777654    47899999998754 44433333 34566677899999999887 4999999999976


Q ss_pred             Ce
Q 012699          368 GQ  369 (458)
Q Consensus       368 ~~  369 (458)
                      ..
T Consensus       293 ~~  294 (493)
T PTZ00421        293 RL  294 (493)
T ss_pred             ce
Confidence            53

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=9.8e-29  Score=222.87  Aligned_cols=382  Identities=15%  Similarity=0.161  Sum_probs=289.3

Q ss_pred             hccccCCCcceeeeeeccCCCc-eeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           17 LSRLKNNSETIKYANIGQTKNS-TLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~-~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      +..++---..|+.++| ..||. ++|+|+..|.+.+||.+..+++..+...+..   ...-..+-.....+++.+.|.++
T Consensus       237 l~sFk~d~g~VtslSF-rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~---sv~~~~fl~~epVl~ta~~DnSl  312 (910)
T KOG1539|consen  237 LMSFKQDWGRVTSLSF-RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG---SVTGATFLPGEPVLVTAGADNSL  312 (910)
T ss_pred             EEEEEccccceeEEEe-ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC---CcccceecCCCceEeeccCCCce
Confidence            3344444588999999 66655 7788888899999999999887555533311   11124455567889999999999


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC-CCCCEEEEEeCCCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS-SSGNNIASASVDGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iw  174 (458)
                      ++|-.+..+..+                              +.++.-.||..|-.|++|. .+|..+.+++.|++.+.+
T Consensus       313 k~~vfD~~dg~p------------------------------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f  362 (910)
T KOG1539|consen  313 KVWVFDSGDGVP------------------------------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF  362 (910)
T ss_pred             eEEEeeCCCCcc------------------------------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence            999877533210                              1455567999999999998 688999999999999998


Q ss_pred             ecCCCCCCCcc----------------ccccCCCceEEEEEecC----CCeEEEEEcCCCcEEEEEcCCCce-eeeccCC
Q 012699          175 TYDSSTPASRN----------------ATIYCGTEIMSLEWECK----SDRLLLIGTADGGIKAWNVDAKRV-VCDLNTT  233 (458)
Q Consensus       175 d~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~  233 (458)
                      ++.........                .....-.+|..+++...    -.+.+.+.-.+...+.|+.+.... ...+...
T Consensus       363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~  442 (910)
T KOG1539|consen  363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK  442 (910)
T ss_pred             hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence            86432211000                00111235666665421    234555556677899999987664 2333222


Q ss_pred             ---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-cCCCCCcEEEEEEccCCCEEE
Q 012699          234 ---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       234 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~  309 (458)
                         .....+.+++.++-|+..+.|...             |.|.+|++++|-....+. ...|..+|+.++...-++.++
T Consensus       443 ~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v  509 (910)
T KOG1539|consen  443 RFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV  509 (910)
T ss_pred             cccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence               123568899999999988888776             699999999998888772 357888999999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce
Q 012699          310 ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR  389 (458)
Q Consensus       310 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  389 (458)
                      +++.+|.+.+||..+...+..+.- ..++.++..+.....++.+..|-.|+++|+.+.+.+         ....+|...+
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---------R~f~gh~nri  579 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---------REFWGHGNRI  579 (910)
T ss_pred             EccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---------HHhhccccce
Confidence            999999999999998887777663 567888999888889999999999999999875432         2344688999


Q ss_pred             eEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC-CcEEEEe
Q 012699          390 HEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD-HSVQVMS  456 (458)
Q Consensus       390 ~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~  456 (458)
                      +.++|||||++|++++.|++|++||+.++..+ ....-..+++++.|+|+|.+|||+..| .-|++|.
T Consensus       580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lI-D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeeEeCCCCcEEEEeecCCcEEEEeccCccee-eeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            99999999999999999999999999988543 333456789999999999999999988 5699995

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=7.6e-29  Score=227.33  Aligned_cols=275  Identities=16%  Similarity=0.266  Sum_probs=230.4

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      |...+.+..|.  ..++++++.|++|++||..++..+. .....|.+.|+++++. ..+.++++|+.|.++++||..+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCc
Confidence            56778888888  4589999999999999998877653 2356788999999998 578999999999999999999999


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      +...+..+.  ..+.++...  ...+++++.|             .+|++|++.++..+..+.  +|..+|.++..+  +
T Consensus       283 C~~~l~gh~--stv~~~~~~--~~~~~sgs~D-------------~tVkVW~v~n~~~l~l~~--~h~~~V~~v~~~--~  341 (537)
T KOG0274|consen  283 CTHSLQGHT--SSVRCLTID--PFLLVSGSRD-------------NTVKVWDVTNGACLNLLR--GHTGPVNCVQLD--E  341 (537)
T ss_pred             EEEEecCCC--ceEEEEEcc--CceEeeccCC-------------ceEEEEeccCcceEEEec--cccccEEEEEec--C
Confidence            999999776  566666654  3456667777             499999999999998875  488999999998  7


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      .++++|+.|++|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|++|++||+++....        ......|
T Consensus       342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c--------~~tl~~h  412 (537)
T KOG0274|consen  342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC--------IHTLQGH  412 (537)
T ss_pred             CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh--------hhhhcCC
Confidence            79999999999999999999999999999999999988765 79999999999999999986311        1122234


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ...+.  .+...+++|++++.|+.|++||..+++....+.+ |...|..+++.  ...+++++.||.+++||+.
T Consensus       413 ~~~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  413 TSLVS--SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             ccccc--ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence            44443  3445788999999999999999999988888877 67899999887  4578899999999999974

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3.1e-28  Score=195.40  Aligned_cols=276  Identities=11%  Similarity=0.175  Sum_probs=221.9

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      ...|..+.|+|.+..|+.++.||++++||+......   ....+..++.+++|.  +...+++|+.||.|+.+|+.++..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~---~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK---LKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh---hheecCCceeeeecc--CCceEEEeccCceEEEEEecCCcc
Confidence            567999999999999999999999999999887543   356788999999997  467799999999999999998876


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK  306 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  306 (458)
                      ... ..  |..++.++.+.+....+++++.|.             .|++||.+.......+.   ....|.++..+  +.
T Consensus        88 ~~i-gt--h~~~i~ci~~~~~~~~vIsgsWD~-------------~ik~wD~R~~~~~~~~d---~~kkVy~~~v~--g~  146 (323)
T KOG1036|consen   88 DQI-GT--HDEGIRCIEYSYEVGCVISGSWDK-------------TIKFWDPRNKVVVGTFD---QGKKVYCMDVS--GN  146 (323)
T ss_pred             eee-cc--CCCceEEEEeeccCCeEEEcccCc-------------cEEEEeccccccccccc---cCceEEEEecc--CC
Confidence            432 23  337899999999999999999995             99999999754444443   23468877765  67


Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC---eeEEeecCCcccC
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG---QVLWTRNCSRFCD  381 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~  381 (458)
                      .|++|+.|..+.+||+++.....+..  .-.-.++++++-|++.-++.++-||.|.+=.+....   ......+|++...
T Consensus       147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~  226 (323)
T KOG1036|consen  147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE  226 (323)
T ss_pred             EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence            89999999999999999865443222  234578999999988889999999999887766541   2223334444332


Q ss_pred             -CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          382 -PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       382 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                       ....-.+|++++|+|--+.|++|+.||.|.+||+...+.+..+.+....|.+++|+.+|..||.++.
T Consensus       227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence             2223457999999999999999999999999999999988888888889999999999999998864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=9.3e-29  Score=229.86  Aligned_cols=287  Identities=17%  Similarity=0.225  Sum_probs=227.1

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEe--CCCcEEEEecCCCC----------CCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          145 GHTSPISCCRFSSSGNNIASAS--VDGTVRIWTYDSST----------PASRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      .+...|.+++.+|+|..++||+  .|+.++||+.+.--          +........|.+.|.|+.|+ +++++|++|+.
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-~dG~~lAsGSD   89 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS-PDGSYLASGSD   89 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-CCCCeEeeccC
Confidence            3456799999999999999999  89999999864311          11111234467899999999 89999999999


Q ss_pred             CCcEEEEEcCC-------C-----------ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699          213 DGGIKAWNVDA-------K-----------RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       213 dg~i~~wd~~~-------~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  274 (458)
                      |+.|.+|....       +           +....+..|  ...|.+++|+|++.++++++.|.             .|.
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--~~DV~Dv~Wsp~~~~lvS~s~Dn-------------sVi  154 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--DSDVLDVNWSPDDSLLVSVSLDN-------------SVI  154 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecC--CCccceeccCCCccEEEEecccc-------------eEE
Confidence            99999999773       0           133444444  47899999999999999999995             999


Q ss_pred             EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC------CCeEEEEEcCCCC
Q 012699          275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD------SAISSILFGPDET  348 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~  348 (458)
                      +|+.++.+....+.  +|...|..+.|+|-|+||++-+.|++|+||++.+....+.+..+-      .-+..+.|||||.
T Consensus       155 iwn~~tF~~~~vl~--~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  155 IWNAKTFELLKVLR--GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             EEccccceeeeeee--cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence            99999997777764  888999999999999999999999999999988766666665443      3578899999999


Q ss_pred             EEEEecC----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-----CCC------------EEEEEeCC
Q 012699          349 SIFSLGS----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-----NGR------------RLLVTSGS  407 (458)
Q Consensus       349 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~------------~l~~~~~~  407 (458)
                      +|++.-.    -.++.|.+-.+-+         .-....+|..++..+.|+|     ..+            .+|+|+.|
T Consensus       233 ~las~nA~n~~~~~~~IieR~tWk---------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGTWK---------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             eecchhhccCCcceeEEEecCCce---------eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            9997643    3346666654332         1223457888999999998     111            57889999


Q ss_pred             ccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          408 VRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       408 ~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|-||.....+++.... -...+|.+++|+|||..|.++|.||+|.+..++
T Consensus       304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            999999997665554433 245789999999999999999999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.4e-28  Score=225.56  Aligned_cols=274  Identities=21%  Similarity=0.308  Sum_probs=227.1

Q ss_pred             ceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeee-eccCCCCeEEEEeCCCCCE
Q 012699           83 SRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLET-FLGHTSPISCCRFSSSGNN  161 (458)
Q Consensus        83 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~  161 (458)
                      ..++.+++.+.++.+|+.....                                  .+.. +.||.+.|.++++..-+.+
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~----------------------------------~i~~~l~GH~g~V~~l~~~~~~~~  263 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGY----------------------------------LILTRLVGHFGGVWGLAFPSGGDK  263 (537)
T ss_pred             cCeEEecCCCceeEEeecccce----------------------------------EEEeeccCCCCCceeEEEecCCCE
Confidence            4566777777777777754322                                  4444 8999999999999877889


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699          162 IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  241 (458)
                      |++|+.|.++++||..++.+..  ....|...+.++...   +.++++|+.|.+|++|++.++..+..+..+.  .+|.+
T Consensus       264 lvsgS~D~t~rvWd~~sg~C~~--~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~--~~V~~  336 (537)
T KOG0274|consen  264 LVSGSTDKTERVWDCSTGECTH--SLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT--GPVNC  336 (537)
T ss_pred             EEEEecCCcEEeEecCCCcEEE--EecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEecccc--ccEEE
Confidence            9999999999999999998865  344677888888754   6678889999999999999999999988744  78999


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEe
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD  321 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d  321 (458)
                      +.++  +..+++++.|             |.|++||+.+++++..+.  +|...|.++.+.+. ..+++|+.|++|++||
T Consensus       337 v~~~--~~~lvsgs~d-------------~~v~VW~~~~~~cl~sl~--gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  337 VQLD--EPLLVSGSYD-------------GTVKVWDPRTGKCLKSLS--GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD  398 (537)
T ss_pred             EEec--CCEEEEEecC-------------ceEEEEEhhhceeeeeec--CCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence            9998  8899999998             599999999999999886  68899999988775 7999999999999999


Q ss_pred             CCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          322 MSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       322 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +++. +++.++.+|..-+..+.+  .++.|++++.|++|++||..+++........        +...+..+++.  ...
T Consensus       399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--------~~~~v~~l~~~--~~~  466 (537)
T KOG0274|consen  399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--------HVGGVSALALG--KEE  466 (537)
T ss_pred             CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC--------CcccEEEeecC--cce
Confidence            9999 999999999999877665  4679999999999999999987655432210        44567777665  578


Q ss_pred             EEEEeCCccEEEEEccCCCcccccCCC
Q 012699          401 LLVTSGSVRAPIYQVRGHASGMRTLPH  427 (458)
Q Consensus       401 l~~~~~~~~i~i~~~~~~~~~~~~~~h  427 (458)
                      +++++.++.+++||++++........+
T Consensus       467 il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  467 ILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             EEEEecCCeeEEEecccCchhhhhhhc
Confidence            889999999999999998777666443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.3e-29  Score=212.17  Aligned_cols=265  Identities=19%  Similarity=0.352  Sum_probs=199.6

Q ss_pred             ccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCC--------ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          144 LGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPAS--------RNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      --|.+.|+.+.+.|.. ..+|+.+..+.|.|||........        ......|..+-.+++|++.....|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            3599999999999965 456778889999999986543222        2244556666788999988889999999999


Q ss_pred             cEEEEEcCCCce-----eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699          215 GIKAWNVDAKRV-----VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP  288 (458)
Q Consensus       215 ~i~~wd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~  288 (458)
                      .|++||+.....     ......+.+...|.+++|++... .+++++.+             +.+.|||++++.......
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd-------------~~L~iwD~R~~~~~~~~~  267 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD-------------GKLMIWDTRSNTSKPSHS  267 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC-------------CeEEEEEcCCCCCCCccc
Confidence            999999975433     11222334447899999999766 45555555             599999999643333334


Q ss_pred             cCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEecc
Q 012699          289 LGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~  365 (458)
                      ...|...++|++|+| ++..||+|+.|++|.+||+|+ .+++.++.+|...|.++.|+|+. ..|++++.|+.+.+||+.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            468889999999999 567889999999999999998 56788999999999999999954 578899999999999998


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEE
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFL  444 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~  444 (458)
                      .-+....         ...          .          .+|        -.+.+...-||...|..+.|+|..+ .++
T Consensus       348 ~ig~eq~---------~ed----------a----------~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~  390 (422)
T KOG0264|consen  348 RIGEEQS---------PED----------A----------EDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIA  390 (422)
T ss_pred             ccccccC---------hhh----------h----------ccC--------CcceeEEecCcccccccccCCCCCCeEEE
Confidence            5432110         000          0          000        0011122237999999999999998 678


Q ss_pred             EecCCCcEEEEeCC
Q 012699          445 TGSADHSVQVMSLS  458 (458)
Q Consensus       445 s~~~dg~v~iw~l~  458 (458)
                      |+++|+.+.||++.
T Consensus       391 SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  391 SVAEDNILQIWQMA  404 (422)
T ss_pred             EecCCceEEEeecc
Confidence            99999999999873

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.1e-27  Score=220.49  Aligned_cols=250  Identities=17%  Similarity=0.260  Sum_probs=188.5

Q ss_pred             EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--------eeeccCCCCC
Q 012699          165 ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--------VCDLNTTDAF  236 (458)
Q Consensus       165 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--------~~~~~~~~~~  236 (458)
                      |+.++.+++|+......  ......|...|.+++|+|.++.+|++|+.||.|++||+.++..        ...+..  |.
T Consensus        50 GG~~gvI~L~~~~r~~~--v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--H~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG--HK  125 (568)
T ss_pred             CCceeEEEeeecCCCce--EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--CC
Confidence            56788999999765433  2234567789999999976688999999999999999986431        223333  33


Q ss_pred             CceeeeeecCCCCeE-EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699          237 PSVLDLKCSPVEPIF-VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG  315 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  315 (458)
                      ..|.+++|+|++..+ ++++.|             +.|++||+++++....+.   +...|.+++|+|+|.+|++++.|+
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~D-------------gtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D~  189 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFD-------------SFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVGK  189 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCC-------------CeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecCC
Confidence            689999999998765 577777             599999999988766654   346799999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEE-----EEcCCCCEEEEecCCC----eEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSI-----LFGPDETSIFSLGSDG----KIIEWSLQNQGQVLWTRNCSRFCDPESSK  386 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  386 (458)
                      .|++||+++++.+..+.+|.+.+.+.     .|++++.+|++++.|+    .|++||+++...++....      .....
T Consensus       190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------ld~~~  263 (568)
T PTZ00420        190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------IDNAS  263 (568)
T ss_pred             EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------ecCCc
Confidence            99999999999999999998865433     3468888999888764    799999997554443221      11222


Q ss_pred             CceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCC
Q 012699          387 SCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTL  440 (458)
Q Consensus       387 ~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~  440 (458)
                      ..+......++|.++++|++|+.|++|++...... .....+..+..+++|.|..
T Consensus       264 ~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        264 APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence            33333444567899999999999999999765311 1112466788999999974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=197.87  Aligned_cols=244  Identities=20%  Similarity=0.304  Sum_probs=203.5

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +..+..|..+|+|+|+   ++.++|||+.|++|+|+|.....                                      
T Consensus        36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~--------------------------------------   74 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRK--------------------------------------   74 (362)
T ss_pred             cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchh--------------------------------------
Confidence            5567889999999999   89999999999999999876552                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC--EEEEEeCCCcEEEE
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN--NIASASVDGTVRIW  174 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw  174 (458)
                                                                .+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|
T Consensus        75 ------------------------------------------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   75 ------------------------------------------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ------------------------------------------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence                                                      1123346899999999999764  89999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      +........  ....|.+.|+.++.+ |.+.+.++.+.|+.+++||+-.|+.........   ....+.|+|.|.+++..
T Consensus       113 ~~~~W~~~~--slK~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  113 RVGSWELLK--SLKAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---KATLVSWSPQGDHFVVS  186 (362)
T ss_pred             EcCCeEEee--eecccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCC---cceeeEEcCCCCEEEEE
Confidence            998775543  445677789999999 788899999999999999999998766655543   23459999999999988


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      ..+              .|-+|.+.+......+...   ..+.|+.|. ++.+|++|..|+.|.+||..+..+...+.+|
T Consensus       187 ~~~--------------~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH  248 (362)
T KOG0294|consen  187 GRN--------------KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH  248 (362)
T ss_pred             ecc--------------EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc
Confidence            886              8999999887776665432   456777775 4568999999999999999999999999999


Q ss_pred             CCCeEEEEE--cCCCCEEEEecCCCeEEEEeccCC
Q 012699          335 DSAISSILF--GPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       335 ~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      ...|-.+.+  .|++.+|+++|.||.|++||++..
T Consensus       249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999999985  567889999999999999999865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-29  Score=220.15  Aligned_cols=288  Identities=17%  Similarity=0.242  Sum_probs=231.2

Q ss_pred             cCCCCeE---EEEeC-CCCCEEEEEeCCCcEEEEecCCCCCC----CccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699          145 GHTSPIS---CCRFS-SSGNNIASASVDGTVRIWTYDSSTPA----SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI  216 (458)
Q Consensus       145 ~h~~~v~---~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  216 (458)
                      .|...|.   .+..+ |.+++|+|||.||.|++|++......    .......|...|..+... .+++.|++++.|-+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-~~~~tlIS~SsDtTV   97 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-GNGKTLISASSDTTV   97 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-cCCCceEEecCCceE
Confidence            3445555   44444 46778999999999999998654432    112233455678888777 678899999999999


Q ss_pred             EEEEcCCC--ceeeeccCCCCCCceeeeee-cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--eEE-----
Q 012699          217 KAWNVDAK--RVVCDLNTTDAFPSVLDLKC-SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--MTV-----  286 (458)
Q Consensus       217 ~~wd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--~~~-----  286 (458)
                      ++|+...+  -+..++..|.  ..|.++++ .++...+++|+-|+             .|.+||+.++..  +..     
T Consensus        98 K~W~~~~~~~~c~stir~H~--DYVkcla~~ak~~~lvaSgGLD~-------------~IflWDin~~~~~l~~s~n~~t  162 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAKNNELVASGGLDR-------------KIFLWDINTGTATLVASFNNVT  162 (735)
T ss_pred             EEeecccCcchhHhhhhccc--chheeeeecccCceeEEecCCCc-------------cEEEEEccCcchhhhhhccccc
Confidence            99999887  4666666666  67999999 88888999999995             999999997632  111     


Q ss_pred             -eecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          287 -LPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       287 -~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                       -.+. ++...|.+++.++.|..|++|+..+.+++||.++++.+..+++|...|.++..++||..++++|.||+|++||+
T Consensus       163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence             1122 56778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  444 (458)
                      ..+.....         ...|...++++..+|+-..+++|+.++.|+.-|+.+......+.....+|..+..+.+.+-+-
T Consensus       243 gqQrCl~T---------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~W  313 (735)
T KOG0308|consen  243 GQQRCLAT---------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVW  313 (735)
T ss_pred             cccceeee---------EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCce
Confidence            87644332         234667799999999999999999999999999998755555666777888888876655556


Q ss_pred             EecCCCcEEEEeC
Q 012699          445 TGSADHSVQVMSL  457 (458)
Q Consensus       445 s~~~dg~v~iw~l  457 (458)
                      ++..|+.|+-|.+
T Consensus       314 vtTtds~I~rW~~  326 (735)
T KOG0308|consen  314 VTTTDSSIKRWKL  326 (735)
T ss_pred             eeeccccceecCC
Confidence            7778889998864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.6e-28  Score=194.32  Aligned_cols=270  Identities=16%  Similarity=0.219  Sum_probs=207.4

Q ss_pred             eeeeCCc-cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE
Q 012699           75 WASSRPA-LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC  153 (458)
Q Consensus        75 ~~~~~~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  153 (458)
                      -++.|++ ...+++.+|+|+++++|+++....                   .             .-+....|.++|.++
T Consensus        31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-------------------~-------------~~ka~~~~~~PvL~v   78 (347)
T KOG0647|consen   31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-------------------L-------------VPKAQQSHDGPVLDV   78 (347)
T ss_pred             heeEeccccCceEEecccCCceEEEEEecCCc-------------------c-------------cchhhhccCCCeEEE
Confidence            3455555 556777999999999999876310                   0             012345799999999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699          154 RFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  232 (458)
                      +|+.||..+++|+.|+.+++||+.+++..   ....|..+|..+.|-+. ....|++|+.|.+|+.||.+...++.++..
T Consensus        79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen   79 CWSDDGSKVFSGGCDKQAKLWDLASGQVS---QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             EEccCCceEEeeccCCceEEEEccCCCee---eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            99999999999999999999999999654   35668899999999843 235899999999999999999999888887


Q ss_pred             CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699          233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (458)
                      ++   +++++..-  ..+++.+..++             .|.+|+++++..........-.-.++|++..++....+.|+
T Consensus       156 Pe---RvYa~Dv~--~pm~vVata~r-------------~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs  217 (347)
T KOG0647|consen  156 PE---RVYAADVL--YPMAVVATAER-------------HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS  217 (347)
T ss_pred             cc---eeeehhcc--CceeEEEecCC-------------cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence            64   56665543  34555555554             99999997654433221122334589999999988889999


Q ss_pred             cCCeEEEEeCCCC--ceeeeeeCCCC---------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          313 VDGMIHMFDMSAG--LQITGWPAHDS---------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       313 ~dg~i~v~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      -+|.+.+..+..+  +.-..++.|..         .|++|+|+|.-..|+|++.||++.+||-....         ++..
T Consensus       218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---------kLk~  288 (347)
T KOG0647|consen  218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---------KLKT  288 (347)
T ss_pred             ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---------hhhc
Confidence            9999999998876  44445555542         57889999988899999999999999987543         3334


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      .+.+..+|++.+|+.+|.++|.+.+
T Consensus       289 s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  289 SETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             cCcCCCccceeEecCCCCEEEEEee
Confidence            4567888999999999999987653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.8e-28  Score=216.46  Aligned_cols=360  Identities=14%  Similarity=0.170  Sum_probs=251.2

Q ss_pred             eeeeccCCCceeeeeecCcceEEeccccccccccce----eee--eccCCceeeeeCCc----cceeEeeccCCCccccc
Q 012699           29 YANIGQTKNSTLASGVNEESLLLSTNSSEACATTAT----HMG--SAEMGQTWASSRPA----LSRFATNMSGNDSISPS   98 (458)
Q Consensus        29 ~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~----~~~~l~~~~~~~~i~~~   98 (458)
                      ++.| .+..+.|..--+|.++.|||+......+...    |.+  |.-..--..+..+.    ...-+.+++.|++|++|
T Consensus       329 A~~F-det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  329 ACQF-DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             EEEe-cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            4578 8889999999999999999998765553332    111  21110000011111    22347899999999999


Q ss_pred             ccccccCCcccceeee----ccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           99 KLEFEDVGAGDIIQMF----NDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                      ++.++...........    ..+.+..+...+.--...+... +.....-+-.-.+++++.+|+|++||+|..-|+++||
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fd-ka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFD-KALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCccc-ccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            9988543222111111    0111111111111000000000 1122223455679999999999999999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecC--CCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecCCC--C
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECK--SDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSPVE--P  249 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~  249 (458)
                      ++...+...  ....|..+|.|+.|+.+  ...+|++++.|..|++||+...- ++.++..|.  ..|+++.|.-++  .
T Consensus       487 ~Lq~l~~~~--~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS--ssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  487 DLQELEYTC--FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS--SSITSVKFACNGLNR  562 (1080)
T ss_pred             Eehhhhhhh--heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc--cceeEEEEeecCCce
Confidence            998766543  34568899999999854  34689999999999999987543 444554444  789999998887  6


Q ss_pred             eEEEeecccCCCCcceeeccceeEEEEECCC----CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699          250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKT----WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG  325 (458)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  325 (458)
                      .+++++.|+             . ..|+...    +.........-....+..++..|..+++++++.|..|+|||+.++
T Consensus       563 ~MiscGADk-------------s-imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg  628 (1080)
T KOG1408|consen  563 KMISCGADK-------------S-IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG  628 (1080)
T ss_pred             EEEeccCch-------------h-hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence            788888874             3 3333322    222111111112346889999999999999999999999999999


Q ss_pred             ceeeeee---CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699          326 LQITGWP---AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       326 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                      +..+.|+   +|++....+...|.|.|+++...|.++.++|..+++.+.         ...+|...|+.+.|.+|-+.|+
T Consensus       629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---------~m~GHsE~VTG~kF~nDCkHlI  699 (1080)
T KOG1408|consen  629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---------QMTGHSEAVTGVKFLNDCKHLI  699 (1080)
T ss_pred             ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---------hhcCcchheeeeeecccchhhe
Confidence            9999887   466788899999999999999999999999999875443         2346888899999999999999


Q ss_pred             EEeCCccEEEEEccC
Q 012699          403 VTSGSVRAPIYQVRG  417 (458)
Q Consensus       403 ~~~~~~~i~i~~~~~  417 (458)
                      +.++||.|.||.+..
T Consensus       700 SvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  700 SVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eecCCceEEEEECch
Confidence            999999999999863

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=7.2e-28  Score=201.70  Aligned_cols=252  Identities=17%  Similarity=0.268  Sum_probs=210.5

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      .+..|.||+..|+.+.|+|+...+++++.|..|+||.......  ......|..+|+.+..+ +.+.||++++.||+..+
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--~~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~F  329 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--PTSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAF  329 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--ccccccccccceeeeec-cCCcEEEEecCCceEEE
Confidence            6678999999999999999999999999999999999876654  33566788999999999 78999999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      .|++++..+.........-.+++.+|+|||.+|.++..|             |.+++||+.+......|  ++|.++|..
T Consensus       330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d-------------~~vkiwdlks~~~~a~F--pght~~vk~  394 (506)
T KOG0289|consen  330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD-------------GVVKIWDLKSQTNVAKF--PGHTGPVKA  394 (506)
T ss_pred             EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC-------------ceEEEEEcCCccccccC--CCCCCceeE
Confidence            999999988776654333568999999999999999998             59999999998866665  579999999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      ++|+.+|-+|++++.|+.|++||++..+...++...+ .++.++.|.+.|.+|+.++.|=.|++++-.+..       ..
T Consensus       395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~-------W~  467 (506)
T KOG0289|consen  395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS-------WT  467 (506)
T ss_pred             EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc-------ce
Confidence            9999999999999999999999999988777776433 379999999999999999888666666644321       11


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      .......+.+..+.+.|....+++++++-|..++++.+
T Consensus       468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            22222345566788999999999999999988888754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=1.5e-28  Score=209.51  Aligned_cols=284  Identities=15%  Similarity=0.245  Sum_probs=235.4

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc---cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR---NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      .|..-|.++.++...++++||+. |.|+|||+........   ........-|.++... ++++.|++|++-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCCceEEeccccceeeeeec
Confidence            58888999999999999999985 7899999976543222   2223344668888888 78999999999999999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      .........+.......++.++.+||.+..+++..|             |.|.|||+.+...+..+  .+|...+.|+.+
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsd-------------GnI~vwDLhnq~~Vrqf--qGhtDGascIdi  559 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-------------GNIAVWDLHNQTLVRQF--QGHTDGASCIDI  559 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-------------CcEEEEEcccceeeecc--cCCCCCceeEEe
Confidence            887765544444444578899999999999998888             69999999998777776  489999999999


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      +++|..|.+|+.|.+|+.||+++++.+.... ....|.++..+|++.+|+.|-.++.+.+.......+          ..
T Consensus       560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----------yq  628 (705)
T KOG0639|consen  560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----------YQ  628 (705)
T ss_pred             cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc----------ee
Confidence            9999999999999999999999988776643 467899999999999999999999988887765422          22


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ...|...|.++.|.+.|+++++.+.|+.+..|...-+..+... ....+|.++..+.|.++++||+.|..-.||.+
T Consensus       629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            3357888999999999999999999999999998877544332 45689999999999999999999998888875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-28  Score=195.66  Aligned_cols=256  Identities=15%  Similarity=0.234  Sum_probs=202.8

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec------CCCCC-------------------------------
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY------DSSTP-------------------------------  181 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~------~~~~~-------------------------------  181 (458)
                      ++.++.||.+.|++++|++.+.++++++.|++..||..      .....                               
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti  261 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI  261 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence            67788899999999999999999999999999999972      11000                               


Q ss_pred             -CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699          182 -ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY  260 (458)
Q Consensus       182 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  260 (458)
                       ........|...|.+..|. ..++.+++++.|.+..+||++++..+..+..++  ...+.++-+|..+++++.+.|.  
T Consensus       262 RvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd--~ELtHcstHptQrLVvTsSrDt--  336 (481)
T KOG0300|consen  262 RVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHD--SELTHCSTHPTQRLVVTSSRDT--  336 (481)
T ss_pred             eeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcc--hhccccccCCcceEEEEeccCc--
Confidence             0001112344567777887 788999999999999999999999999998887  5788899999999999999985  


Q ss_pred             CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-ceeeeeeCCCCCeE
Q 012699          261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG-LQITGWPAHDSAIS  339 (458)
Q Consensus       261 ~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~  339 (458)
                                 +.++||++.. ....-.+.+|...|++..|..+. .+++|+.|.+|++||+++. .++.+++ ...+++
T Consensus       337 -----------TFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~N  402 (481)
T KOG0300|consen  337 -----------TFRLWDFREA-IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPAN  402 (481)
T ss_pred             -----------eeEeccchhh-cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccc
Confidence                       9999999842 22222346899999999998765 5899999999999999884 5566665 367899


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC--CEEEEEeCCccEEEEEccC
Q 012699          340 SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG--RRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~i~i~~~~~  417 (458)
                      .++.+..++.++.--++..|++||+....... .    .......|...|.+++|..+-  .-|++++-|..+.-|.+..
T Consensus       403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-l----PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-L----PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             eeEeecCCceEEeccCCceEEEEecCCCcccc-C----CcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            99999988889888888899999998653221 1    111345788889999998654  4578888999999998865


Q ss_pred             C
Q 012699          418 H  418 (458)
Q Consensus       418 ~  418 (458)
                      .
T Consensus       478 p  478 (481)
T KOG0300|consen  478 P  478 (481)
T ss_pred             c
Confidence            4

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=9.7e-28  Score=191.24  Aligned_cols=292  Identities=14%  Similarity=0.243  Sum_probs=224.1

Q ss_pred             ccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCC-------------CccccccCCCceEEEEEecCCCeEEEE
Q 012699          144 LGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPA-------------SRNATIYCGTEIMSLEWECKSDRLLLI  209 (458)
Q Consensus       144 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~  209 (458)
                      +.|.+.|+++...+ .|+++++|+.||.|.+||++.....             .+.....|.-.|..+.|.|.+..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46999999999988 6899999999999999999764411             111222344579999999999999999


Q ss_pred             EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC---eEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP---IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      ++.|.++++||..+.+....++..   ..|++-+++|-..   +++++..+             -.|++.|+.++.....
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~-------------~~VrLCDi~SGs~sH~  183 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRD-------------VQVRLCDIASGSFSHT  183 (397)
T ss_pred             ccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCC-------------CcEEEEeccCCcceee
Confidence            999999999999999988877766   4788888888543   45555555             3999999999998887


Q ss_pred             eecCCCCCcEEEEEEccCCCE-EEEEecCCeEEEEeCCCC-ceee--------------eeeCCCCCeEEEEEcCCCCEE
Q 012699          287 LPLGEDPPAITSLCFNHNGKI-LAASAVDGMIHMFDMSAG-LQIT--------------GWPAHDSAISSILFGPDETSI  350 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~v~d~~~~-~~~~--------------~~~~~~~~v~~~~~~~~~~~l  350 (458)
                      +.  +|.+.|.++.|+|...+ |++|+.||.|++||++.- -+..              .-.+|.+.++.++|+.++.++
T Consensus       184 Ls--GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  184 LS--GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             ec--cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            74  89999999999997765 678999999999999753 2222              234678899999999999999


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCc
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA  430 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~  430 (458)
                      ++++.|..+++|+..++........  +..........+. +. +.+...++.--.++.+.++.+-.+..+..+..|...
T Consensus       262 ~~~gtd~r~r~wn~~~G~ntl~~~g--~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~  337 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGRNTLREFG--PIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR  337 (397)
T ss_pred             hhccCccceEEeecccCcccccccc--cccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence            9999999999999998755332111  1111111111111 22 333333433344588999999888888888889889


Q ss_pred             EEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          431 ITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       431 v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      |.+.++-|+-+.+.++..|+.|..|..
T Consensus       338 i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  338 INCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eeEEeecCchhhhhccccCCccccccc
Confidence            999999999999999999999999964

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.5e-27  Score=216.40  Aligned_cols=235  Identities=11%  Similarity=0.129  Sum_probs=175.8

Q ss_pred             eeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCC-C-----ccccccCCCceEEEEEecCCCeEEEEEc
Q 012699          139 FLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPA-S-----RNATIYCGTEIMSLEWECKSDRLLLIGT  211 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~  211 (458)
                      .+..+.+|.++|.+++|+|+ +.+|++|+.|++|+|||+.+.... .     ......|...|.+++|+|....++++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            55678899999999999996 789999999999999999764321 0     1123456788999999965556678999


Q ss_pred             CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      .|++|++||+++++....+...   ..+.+++|+|+|..+++++.+             +.|++||+++++.+..+.  +
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~---~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~~i~tl~--g  207 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMP---KKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQEIASSFH--I  207 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecC---CcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCcEEEEEe--c
Confidence            9999999999999877666432   579999999999999988877             499999999998887664  5


Q ss_pred             CCCcEEE-----EEEccCCCEEEEEecCC----eEEEEeCCC-CceeeeeeC--CCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699          292 DPPAITS-----LCFNHNGKILAASAVDG----MIHMFDMSA-GLQITGWPA--HDSAISSILFGPDETSIFSLGSDGKI  359 (458)
Q Consensus       292 ~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i  359 (458)
                      |.+.+..     ..|++++.+|++++.|+    .|++||+++ .+++..+..  +.+.+......+++.++++|+.|+.|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            5544332     33568888999887764    799999995 556655432  33344444445578899999999999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      ++|++.... ...       .....+..+...++|.|...
T Consensus       288 r~~e~~~~~-~~~-------l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        288 RYYQHSLGS-IRK-------VNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEccCCc-EEe-------ecccccCCCccceEEccccc
Confidence            999997642 211       11222445667789988643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.6e-29  Score=191.68  Aligned_cols=257  Identities=17%  Similarity=0.269  Sum_probs=205.0

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-CCccccccCCCceEEEEEe-cCCCeEEEEEcCCCcEEEEE
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-ASRNATIYCGTEIMSLEWE-CKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd  220 (458)
                      -..|.+.|..+...--|++||||+.|++|+|+.++.... ........|.++|..++|. |.-+.+|++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            357999999888888899999999999999999987665 3344556788999999995 44789999999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAIT  297 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~  297 (458)
                      -++++-.+......|...|++++|.|.+-  .|++++.|             |.|.+.+.+.. .-........|+-.++
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD-------------G~vsvl~~~~~g~w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD-------------GKVSVLTYDSSGGWTTSKIVFAHEIGVN  153 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC-------------CcEEEEEEcCCCCccchhhhhccccccc
Confidence            99887666555556668899999998754  67777777             69999988764 2222222357888899


Q ss_pred             EEEEccC---C-----------CEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCCeEEEEEcCCC----CEEEEecCCC
Q 012699          298 SLCFNHN---G-----------KILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDE----TSIFSLGSDG  357 (458)
Q Consensus       298 ~~~~~~~---~-----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg  357 (458)
                      +++|.|-   |           +.|++|+.|..|+||+..+++  ...++.+|.+.|+.++|.|.-    .+|++++.||
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            9999985   4           579999999999999988753  345688999999999999943    5799999999


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      ++.||..+..... +..     ...+.....+..+.||+.|+.|+++++|+.+.+|.-+..
T Consensus       234 ~viIwt~~~e~e~-wk~-----tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  234 TVIIWTKDEEYEP-WKK-----TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cEEEEEecCccCc-ccc-----cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            9999998743222 211     112235667999999999999999999999999976544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.96  E-value=1.8e-27  Score=192.04  Aligned_cols=281  Identities=16%  Similarity=0.274  Sum_probs=220.7

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-----------ccccccCCCceEEEEEec------CCCeEEEEEcC
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-----------RNATIYCGTEIMSLEWEC------KSDRLLLIGTA  212 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~  212 (458)
                      ...+.|+|||..|++-+.|..+++|++...-...           .......+..|...+|-+      |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4568999999999999999999999975321110           011122345677777763      56789999999


Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCC---ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC-CCCceeEEee
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFP---SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM-KTWKAMTVLP  288 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~-~~~~~~~~~~  288 (458)
                      +.-|++||.-+|+....+..-++..   ...+++|+|||..++++...              +|++||+ +.++.-..+.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykr--------------cirvFdt~RpGr~c~vy~  197 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKR--------------CIRVFDTSRPGRDCPVYT  197 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccc--------------eEEEeeccCCCCCCcchh
Confidence            9999999999999988877665543   45689999999999999876              9999999 5555433332


Q ss_pred             cC-----CCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEE
Q 012699          289 LG-----EDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIE  361 (458)
Q Consensus       289 ~~-----~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i  361 (458)
                      ..     +..+-+.+++|+| +.+.+++|+...++-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|+. |..|..
T Consensus       198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~  277 (406)
T KOG2919|consen  198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC  277 (406)
T ss_pred             hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence            22     2356789999999 4568999999999999998889999999999999999999999999999987 788999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCcccccCCCCCcEEEEEECCCC
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HASGMRTLPHGAAITTVDWHPTL  440 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~  440 (458)
                      ||++..+.+++...     ........-.-+...|+|++|++|+.+|.|++||+++ +..+..+..|+..|+.++++|--
T Consensus       278 WDiR~~~~pv~~L~-----rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  278 WDIRYSRDPVYALE-----RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             Eeehhccchhhhhh-----hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence            99998766554322     1112223334466779999999999999999999998 44466666899999999999998


Q ss_pred             CeEEEecCC
Q 012699          441 PMFLTGSAD  449 (458)
Q Consensus       441 ~~l~s~~~d  449 (458)
                      +++|+++..
T Consensus       353 pilatssGq  361 (406)
T KOG2919|consen  353 PILATSSGQ  361 (406)
T ss_pred             ceeeeccCc
Confidence            899988754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5e-27  Score=207.33  Aligned_cols=243  Identities=19%  Similarity=0.318  Sum_probs=204.0

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      +...|+++.|+++|.+|+.|..+|.|.|||..+.+.... ....|...|.+++|.   ...+.+|+.++.|..+|++..+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~-~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT-LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc-ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecch
Confidence            488999999999999999999999999999987766532 222277899999997   6789999999999999999887


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-C
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-N  304 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~  304 (458)
                      .... ....|...|..+.|++++.++++++.|.             .+.|||....++...+  ..|...|.+++|+| .
T Consensus       292 ~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q  355 (484)
T KOG0305|consen  292 HVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQ  355 (484)
T ss_pred             hhhh-hhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEE--eccceeeeEeeeCCCc
Confidence            6665 2344447899999999999999999994             9999999766666555  48889999999999 5


Q ss_pred             CCEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCCCeeEEeecCCccc
Q 012699          305 GKILAASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       305 ~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      ..+||+|+  .|+.|++||..+++.+..+. -...|..|.|++..+.|+++-  .++.|.||+..+.+..         .
T Consensus       356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---------~  425 (484)
T KOG0305|consen  356 SGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---------A  425 (484)
T ss_pred             cCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---------e
Confidence            67888865  59999999999999888765 367899999999887666543  4778999999875433         2


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      ...+|...|..+++||||..+++|+.|.++++|++-..
T Consensus       426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  426 ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            34478888999999999999999999999999999765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.5e-27  Score=187.58  Aligned_cols=239  Identities=15%  Similarity=0.239  Sum_probs=196.0

Q ss_pred             cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcc
Q 012699          187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSN  264 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~  264 (458)
                      ...|..++.+++.+   +.++++|+.|-+|++||+.....+..+..+.  +.++++.|.+...  .|++++.|       
T Consensus        39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdD-------  106 (362)
T KOG0294|consen   39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDD-------  106 (362)
T ss_pred             ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCC-------
Confidence            34567889999976   8899999999999999999988888777765  7899999999876  88898888       


Q ss_pred             eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEc
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFG  344 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~  344 (458)
                            |.|.+|+...+..+..++  +|...|+.++.+|.+++.++.+.|+.++.||+-.|+.-..++- ....+.+.|+
T Consensus       107 ------G~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~  177 (362)
T KOG0294|consen  107 ------GHIIIWRVGSWELLKSLK--AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWS  177 (362)
T ss_pred             ------CcEEEEEcCCeEEeeeec--ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEc
Confidence                  699999999998888876  6777799999999999999999999999999988876655543 2233459999


Q ss_pred             CCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699          345 PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       345 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~  424 (458)
                      |.|.+++.++.+ .|-+|.+.+.......          .....+.++.|- ++..|++|..++.|.+||.+.......+
T Consensus       178 ~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i----------~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~  245 (362)
T KOG0294|consen  178 PQGDHFVVSGRN-KIDIYQLDNASVFREI----------ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF  245 (362)
T ss_pred             CCCCEEEEEecc-EEEEEecccHhHhhhh----------hccccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence            999999888776 6889998865322111          111223444433 6678899999999999999998777888


Q ss_pred             CCCCCcEEEEEE--CCCCCeEEEecCCCcEEEEeCC
Q 012699          425 LPHGAAITTVDW--HPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       425 ~~h~~~v~~~~~--~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+|...|-++.+  .|++.+|+|+|.||.|+|||++
T Consensus       246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             ecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            899999999985  6778899999999999999985

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.6e-27  Score=190.03  Aligned_cols=305  Identities=17%  Similarity=0.165  Sum_probs=210.0

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCcc-ceeEeeccCCCcc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPAL-SRFATNMSGNDSI   95 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i   95 (458)
                      +..|+||...|+|++| +.||++|||++.|++|++|+...-.....-......+-+.--.+.|.++ ..++++.-...++
T Consensus        79 ~~~LKgH~~~vt~~~F-sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAF-SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhccCCceeeeEE-cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            5689999999999999 9999999999999999999987533221111011111111123344443 3444445556678


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      +++.+.....                 |.+-..     .++......-+.|.-.|..+-...++.+|++++.|.+|.+|+
T Consensus       158 ~vyk~~K~~d-----------------G~~~~~-----~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~  215 (420)
T KOG2096|consen  158 CVYKLVKKTD-----------------GSGSHH-----FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD  215 (420)
T ss_pred             EEEEeeeccc-----------------CCCCcc-----cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEe
Confidence            8887755332                 111111     111111222345777888888888899999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC------ceeeeccCCCCCCceeeeeecCCCC
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK------RVVCDLNTTDAFPSVLDLKCSPVEP  249 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~  249 (458)
                      +. ++.+....+  ....-+..+.+ |+++++++++..-.+++|.+--+      +..+.+....|...|..++|+++..
T Consensus       216 lk-Gq~L~~idt--nq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  216 LK-GQLLQSIDT--NQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             cC-Cceeeeecc--ccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence            98 444432222  22334556677 89999999999999999986422      2233444555568999999999999


Q ss_pred             eEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEe--ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699          250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVL--PLGEDPPAITSLCFNHNGKILAASAVDGMIHMF  320 (458)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  320 (458)
                      .+++.+.|             |.+++||+.-       .+.+++.  .+.........++++|+|+.|++.. ...+.+|
T Consensus       292 r~vtvSkD-------------G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~  357 (420)
T KOG2096|consen  292 RAVTVSKD-------------GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF  357 (420)
T ss_pred             eeEEEecC-------------CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence            99999999             6999999752       1222222  1122223445899999999888754 5579999


Q ss_pred             eCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          321 DMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       321 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      ..++++....+. .|...|.+++|+++|+++++++ |..++++.
T Consensus       358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            999887766553 7899999999999999999987 55777765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9e-27  Score=187.04  Aligned_cols=263  Identities=17%  Similarity=0.242  Sum_probs=203.8

Q ss_pred             eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699           77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS  156 (458)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  156 (458)
                      +.+++....|+++++||+++++++....                                  .. ..-.|..++.+++|.
T Consensus        19 v~f~~~~~~LLvssWDgslrlYdv~~~~----------------------------------l~-~~~~~~~plL~c~F~   63 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSWDGSLRLYDVPANS----------------------------------LK-LKFKHGAPLLDCAFA   63 (323)
T ss_pred             EEEcCcCCcEEEEeccCcEEEEeccchh----------------------------------hh-hheecCCceeeeecc
Confidence            5555556778888899999999986632                                  11 112589999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF  236 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  236 (458)
                      ++ ..+++|+.||.|+.+|+.++...   ....|..++.++.+. .....+++|+.|++|++||.+.......+...   
T Consensus        64 d~-~~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---  135 (323)
T KOG1036|consen   64 DE-STIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---  135 (323)
T ss_pred             CC-ceEEEeccCceEEEEEecCCcce---eeccCCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccC---
Confidence            75 46899999999999999988754   356688899999999 66678999999999999999985555444433   


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                      ..|.++...  +..|+.+..++             .+.+||+++........-..-...+.|+++-|++.=+++++-||.
T Consensus       136 kkVy~~~v~--g~~LvVg~~~r-------------~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR  200 (323)
T KOG1036|consen  136 KKVYCMDVS--GNRLVVGTSDR-------------KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR  200 (323)
T ss_pred             ceEEEEecc--CCEEEEeecCc-------------eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence            367776654  56777777665             999999998765543332334456899999998877899999999


Q ss_pred             EEEEeCCCC----ceeeeeeCCCC---------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          317 IHMFDMSAG----LQITGWPAHDS---------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       317 i~v~d~~~~----~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      |.+=.++..    +....|+.|..         +|++|+|+|-...|+||+.||.|.+||+.+.+...         ...
T Consensus       201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~---------q~~  271 (323)
T KOG1036|consen  201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK---------QLA  271 (323)
T ss_pred             EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh---------hcc
Confidence            988776654    33445666642         89999999988899999999999999999875443         233


Q ss_pred             CCCCceeEEEEccCCCEEEEEeC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      .....|..++|+.+|..||+++.
T Consensus       272 ~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  272 KYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CCCCceEEEEeccCCCeEEEEec
Confidence            34567999999999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-26  Score=210.46  Aligned_cols=268  Identities=16%  Similarity=0.271  Sum_probs=216.4

Q ss_pred             ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccccc-CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIY-CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      .+|+..-+.++|.|+|++|++|+.||.|++|+........  ..+. ++..|.+++..   ..+|++++.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--ETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--chhhccCceeEEEeec---ccceEEeeccceEEEeeCC
Confidence            3799999999999999999999999999999976653221  1222 67778888754   5689999999999999998


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      +++.-..+....  -++.+++++.+|.+++.|+.|-             .|++.++.+......+  .+|..+|.++.|+
T Consensus        85 s~~~~~iL~Rft--lp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~l--rgh~apVl~l~~~  147 (933)
T KOG1274|consen   85 SGEEDTILARFT--LPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVL--RGHDAPVLQLSYD  147 (933)
T ss_pred             CCCccceeeeee--ccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheee--cccCCceeeeeEc
Confidence            877543333222  5789999999999999999995             9999999887777766  4788999999999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAH--------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      |++.+||+.+-||.|++||+.++.+..++.+-        ...+..++|+|++..|+..+.|+.|++|+..+.......+
T Consensus       148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr  227 (933)
T KOG1274|consen  148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR  227 (933)
T ss_pred             CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence            99999999999999999999998776665421        3466789999998889999999999999998765443221


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  444 (458)
                             ...+...+..++|+|.|+|||+++-+|.|.|||.++...    ......|.+++|.|+.+.+-
T Consensus       228 -------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  228 -------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             -------ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeE
Confidence                   222334489999999999999999999999999998432    22346899999999988443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.7e-26  Score=175.48  Aligned_cols=261  Identities=23%  Similarity=0.286  Sum_probs=198.8

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC------CC--C-----CccccccCCCceEEEEEecCCC
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS------TP--A-----SRNATIYCGTEIMSLEWECKSD  204 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~--~-----~~~~~~~~~~~v~~~~~~~~~~  204 (458)
                      +.+..+. .+..|.+++|+|.|.+.+.|+...+++|.....-      ..  .     .......|.+.|+|.+|+ +.+
T Consensus        24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-~~g  101 (350)
T KOG0641|consen   24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-PCG  101 (350)
T ss_pred             EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-Ccc
Confidence            3455553 5678999999999999999999999998754321      10  0     011233456789999999 889


Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      +++++|+.|.+|++.-++...+..  ..                                                    
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~--~g----------------------------------------------------  127 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNA--TG----------------------------------------------------  127 (350)
T ss_pred             CeEEecCCCceEEEEecccccccc--cC----------------------------------------------------
Confidence            999999999999887655433210  00                                                    


Q ss_pred             EEeecCCCCCcEEEEEEccC----CCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699          285 TVLPLGEDPPAITSLCFNHN----GKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKI  359 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  359 (458)
                      ..+.+..|.+.|..++|-.+    +..|++++ .|..|++-|...++....+.+|.+.|.++- +=++-++++|+.|.+|
T Consensus       128 ~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdkti  206 (350)
T KOG0641|consen  128 HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTI  206 (350)
T ss_pred             cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceE
Confidence            01112345566788887543    45666654 477889999999999999999999998873 3357799999999999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      ++||++-...+.....  .+....-....|.+++..|.|++|++|-.|....+||++++..+.++.+|...|.++.|+|.
T Consensus       207 rfwdlrv~~~v~~l~~--~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~  284 (350)
T KOG0641|consen  207 RFWDLRVNSCVNTLDN--DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG  284 (350)
T ss_pred             EEEeeeccceeeeccC--cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC
Confidence            9999997654443221  11112223467999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEecCCCcEEEEeC
Q 012699          440 LPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       440 ~~~l~s~~~dg~v~iw~l  457 (458)
                      ..+|.+|+.|..|++=|+
T Consensus       285 a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  285 AHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             ceEEEEecccceEEEeec
Confidence            999999999999999776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=6.1e-26  Score=201.52  Aligned_cols=287  Identities=14%  Similarity=0.151  Sum_probs=206.4

Q ss_pred             eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE-
Q 012699           84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI-  162 (458)
Q Consensus        84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-  162 (458)
                      .++++++.|+.+.+|++....                                  .+..+.+|.. +.+++|+|+++.+ 
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~----------------------------------~~~~~~~~~~-~~~l~~~~dg~~l~   46 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLE----------------------------------VTRTFPVGQR-PRGITLSKDGKLLY   46 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCc----------------------------------eEEEEECCCC-CCceEECCCCCEEE
Confidence            467788899999999975422                                  3334444433 6789999999876 


Q ss_pred             EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEE-EEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699          163 ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLL-LIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       163 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  241 (458)
                      ++++.++.|++||..+++....   ......+..++|+ ++++.+ +++..++.+++||+.+++.+..+...   ..+..
T Consensus        47 ~~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~  119 (300)
T TIGR03866        47 VCASDSDTIQVIDLATGEVIGT---LPSGPDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEG  119 (300)
T ss_pred             EEECCCCeEEEEECCCCcEEEe---ccCCCCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcce
Confidence            5677889999999988765421   2223345678898 455545 45566899999999998877666533   24678


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEE
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMF  320 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~  320 (458)
                      ++++|++..++++..+.            ..+.+||.++++........   ..+..++|+|++++|++++ .++.|++|
T Consensus       120 ~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~  184 (300)
T TIGR03866       120 MAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVI  184 (300)
T ss_pred             EEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence            99999999998887653            26778899887766554322   2357799999999886554 58999999


Q ss_pred             eCCCCceeeeeeCCC-----C--CeEEEEEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699          321 DMSAGLQITGWPAHD-----S--AISSILFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM  392 (458)
Q Consensus       321 d~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  392 (458)
                      |+++++.+..+..+.     .  ....++|+|++++++. .+.++.+.+||+.+.+.....          .....+.++
T Consensus       185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------~~~~~~~~~  254 (300)
T TIGR03866       185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----------LVGQRVWQL  254 (300)
T ss_pred             EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----------EeCCCcceE
Confidence            999988776654321     1  2346889999998554 455778999999875443211          122357889


Q ss_pred             EEccCCCEEEEEe-CCccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699          393 ALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP  438 (458)
Q Consensus       393 ~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~  438 (458)
                      +|+|+|++|+++. .++.|.+||+.+.+.+..+. ....++.++++|
T Consensus       255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~  300 (300)
T TIGR03866       255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK-VGRLPWGVVVRP  300 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-cccccceeEeCC
Confidence            9999999998875 58999999999986655554 345668888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.5e-27  Score=187.60  Aligned_cols=287  Identities=19%  Similarity=0.248  Sum_probs=214.7

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      ..|+.|++.|.+||+|+.||.|.|||+.+.....  ....|-.+|.+++|+ ++++.|++++.|..|.+||+..|.+++.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCceeE
Confidence            7899999999999999999999999998876432  345677899999999 8999999999999999999999999888


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC---CCCcEEEEEEccCCC
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE---DPPAITSLCFNHNGK  306 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~  306 (458)
                      +...   ++|+...|+|.....+.+..-..            .-.+.++...+. ..+....   ......+..|.+.|+
T Consensus       103 irf~---spv~~~q~hp~k~n~~va~~~~~------------sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~  166 (405)
T KOG1273|consen  103 IRFD---SPVWGAQWHPRKRNKCVATIMEE------------SPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGK  166 (405)
T ss_pred             EEcc---CccceeeeccccCCeEEEEEecC------------CcEEEEecCCce-eeccCCCccccccccccccccCCCC
Confidence            8776   68999999997664443332211            222333332111 1111111   111223446889999


Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeeeCCC-CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE---eecCCcccCC
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWPAHD-SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW---TRNCSRFCDP  382 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~  382 (458)
                      ++++|...|.+.+||..+.+++..++... ..|..+.++..|+.|+..+.|..|+.|+++.-...-.   .....++...
T Consensus       167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            99999999999999999999998887666 7899999999999999999999999999874211100   0000000000


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                       -....=.+++||.+|.|+++++.. ..++||....+..+..+.|.+ ....++.|+|-...+++- ..|.|+||..
T Consensus       247 -VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  247 -VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             -HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence             011223568999999999988854 579999999887766666766 578899999999988887 6889999974

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=6e-27  Score=203.92  Aligned_cols=297  Identities=16%  Similarity=0.202  Sum_probs=228.2

Q ss_pred             eeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       136 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      ...+-..++||++.|.|++..|.|.+|++|+.||+|+||.+.++.++.   .....+.|.+++|+|....-+++......
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr---~~~~d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR---TVQFDSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE---EEeecceeEEEEecCCCCceeEEEEecCc
Confidence            335667889999999999999999999999999999999999999875   34456789999999755544444444444


Q ss_pred             EEEEEcCCCce---------eeec--------------------------cCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699          216 IKAWNVDAKRV---------VCDL--------------------------NTTDAFPSVLDLKCSPVEPIFVSAAASRRY  260 (458)
Q Consensus       216 i~~wd~~~~~~---------~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      +.+.+..-|..         ....                          ....+...|..+.|+..|.+|++...+.. 
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~-  544 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG-  544 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC-
Confidence            55555432210         0000                          00112356889999999999998876542 


Q ss_pred             CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEE
Q 012699          261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISS  340 (458)
Q Consensus       261 ~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~  340 (458)
                               ...|.|+++...+...-|.  ...+.+.++.|+|...+|++++ ...|++||+...+.++.+......|..
T Consensus       545 ---------~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~  612 (733)
T KOG0650|consen  545 ---------NKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISS  612 (733)
T ss_pred             ---------cceEEEEecccccccCchh--hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeee
Confidence                     1388899988766655443  3446699999999999999876 457999999988888888777889999


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc----
Q 012699          341 ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR----  416 (458)
Q Consensus       341 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~----  416 (458)
                      ++.+|.|.-|+.++.|+.+..+|+.-...+        ......|...+..++|++.-.++++|+.||++.|+.-.    
T Consensus       613 msihp~GDnli~gs~d~k~~WfDldlsskP--------yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D  684 (733)
T KOG0650|consen  613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKP--------YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND  684 (733)
T ss_pred             eeecCCCCeEEEecCCCeeEEEEcccCcch--------hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence            999999999999999999999999854332        23334577889999999999999999999999988532    


Q ss_pred             --CCC---cccccCCCCCc----EEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          417 --GHA---SGMRTLPHGAA----ITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       417 --~~~---~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                        .+.   ++..+.+|...    |.++.|||...+|+++|.||+|++|.
T Consensus       685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence              111   12334477655    99999999999999999999999993

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=2.7e-25  Score=197.41  Aligned_cols=274  Identities=14%  Similarity=0.169  Sum_probs=197.2

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCce
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSV  239 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v  239 (458)
                      ..+++++.|+.+++||+.+++...   .......+..++|+|.+..++++++.++.|++||..+++....+....   .+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~   75 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTR---TFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DP   75 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEE---EEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---Cc
Confidence            578899999999999998876543   223344567899994433344677889999999999988876665432   35


Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-eEE
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-MIH  318 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~  318 (458)
                      ..+.++|+++.++++..+.            +.+++||+++.+.+..+...   ..+.+++|+|++++++++..++ .+.
T Consensus        76 ~~~~~~~~g~~l~~~~~~~------------~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDD------------NLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAH  140 (300)
T ss_pred             cEEEECCCCCEEEEEcCCC------------CeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEE
Confidence            6789999999776654322            59999999987777666422   3367899999999999988765 567


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC
Q 012699          319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN  397 (458)
Q Consensus       319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  397 (458)
                      +||.++++....+.. .....+++|+|++++|+++ ..++.|++||+.+.+.......  ..............++|+|+
T Consensus       141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~s~d  217 (300)
T TIGR03866       141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF--EIPGVHPEAVQPVGIKLTKD  217 (300)
T ss_pred             EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee--cccccccccCCccceEECCC
Confidence            889988776655443 3345789999999988654 4699999999997654332110  00000011223456889999


Q ss_pred             CCEEEEE-eCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe-cCCCcEEEEeCC
Q 012699          398 GRRLLVT-SGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG-SADHSVQVMSLS  458 (458)
Q Consensus       398 g~~l~~~-~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~l~  458 (458)
                      +++++++ ..++.+.+||+.+.+... ...+...+.+++|+|++++|+++ +.+|.|++||+.
T Consensus       218 g~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       218 GKTAFVALGPANRVAVVDAKTYEVLD-YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEE-EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            9987664 456789999998765432 23345679999999999988876 569999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=8.2e-27  Score=196.76  Aligned_cols=301  Identities=14%  Similarity=0.162  Sum_probs=223.4

Q ss_pred             eeeeeeccCCCCeEEEEeCCCC--CEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          138 DFLETFLGHTSPISCCRFSSSG--NNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      ......+-|.++|++++|+|..  +++|+|..-|.|-+||+.+.+...  ......|..+|.++.|+|.+...+++.+.|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3455667899999999999954  578999999999999996443322  223445678999999999999999999999


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGED  292 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~  292 (458)
                      |+|+.-|++.+.....+...........+.++.....++.+..-             |...+||+++... ...+  .-|
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-------------G~f~~iD~R~~~s~~~~~--~lh  321 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-------------GNFNVIDLRTDGSEYENL--RLH  321 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc-------------cceEEEEeecCCccchhh--hhh
Confidence            99999999987655444443333556778888877777777665             5999999998665 3333  345


Q ss_pred             CCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc--
Q 012699          293 PPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ--  365 (458)
Q Consensus       293 ~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--  365 (458)
                      ...|+.++++|. ..+|++++.|++.+|||++.-.    ++.....|...|.+..|||.+-.|++.+.|..|+|||..  
T Consensus       322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~  401 (498)
T KOG4328|consen  322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI  401 (498)
T ss_pred             hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence            568999999995 4578999999999999998632    233445799999999999987779999999999999985  


Q ss_pred             -CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEE-EECCCCCe
Q 012699          366 -NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTV-DWHPTLPM  442 (458)
Q Consensus       366 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~-~~~~~~~~  442 (458)
                       ...++..+....   .....--.....+|.|+..++++|..-..|-|+|-.+++.+..+... ...|.++ .|+|-+..
T Consensus       402 sa~~~p~~~I~Hn---~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~  478 (498)
T KOG4328|consen  402 SAKDEPLGTIPHN---NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDT  478 (498)
T ss_pred             cccCCccceeecc---CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccc
Confidence             222221111100   00011123445789999999999999999999999988766655433 3355554 79999984


Q ss_pred             EE-EecCCCcEEEEe
Q 012699          443 FL-TGSADHSVQVMS  456 (458)
Q Consensus       443 l~-s~~~dg~v~iw~  456 (458)
                      ++ .++..|.|+||.
T Consensus       479 ~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  479 LAAGGNSSGKIYVFT  493 (498)
T ss_pred             eeccCCccceEEEEe
Confidence            44 455778999985

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.4e-26  Score=194.17  Aligned_cols=248  Identities=16%  Similarity=0.233  Sum_probs=201.6

Q ss_pred             cCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          145 GHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      --..+|.+.+|.|+|. .+++++.-..+..||+.+.+........... ..+.....+ +++++|+..+..|.|.+....
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhh
Confidence            3457899999999998 8999999999999999887765432222222 345666777 778899999999999999999


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      +++.+.+++..   +.+.++.|+.+++.+++.+.+             |.|.+||++...++..+.-.+. -.-++++.+
T Consensus       334 T~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S  396 (514)
T KOG2055|consen  334 TKELITSFKIE---GVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGS-VHGTSLCIS  396 (514)
T ss_pred             hhhhhheeeec---cEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCc-cceeeeeec
Confidence            99998888776   579999999999998888877             6999999999999888864433 235778888


Q ss_pred             cCCCEEEEEecCCeEEEEeCCC------CceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccCCCeeEEee
Q 012699          303 HNGKILAASAVDGMIHMFDMSA------GLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~  374 (458)
                      +++.|||+|+..|.|.|||.++      .+++..+..-...|+++.|+|+...|+.+|.  +..+++--+.+....    
T Consensus       397 ~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF----  472 (514)
T KOG2055|consen  397 LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF----  472 (514)
T ss_pred             CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee----
Confidence            9999999999999999999653      4677777777789999999999999988876  667888877653211    


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                        ..+......-+.+++++|||.|.+||+|...|++.+|.+.
T Consensus       473 --sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  473 --SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             --ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence              1333344556779999999999999999999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=6.3e-27  Score=199.69  Aligned_cols=240  Identities=15%  Similarity=0.296  Sum_probs=204.1

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      ....|+++...|||+.|++|++-.++.|||+....+.............++++.+ ++.++.++++.||.|.|||+.+..
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccce
Confidence            3456889999999999999999999999999877654333332233456778888 788999999999999999999999


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      .+..++.+.  ..+.++.++++|..+-+++-|.             +|+.||+++++.+....+.   ..|.++..+|++
T Consensus       543 ~VrqfqGht--DGascIdis~dGtklWTGGlDn-------------tvRcWDlregrqlqqhdF~---SQIfSLg~cP~~  604 (705)
T KOG0639|consen  543 LVRQFQGHT--DGASCIDISKDGTKLWTGGLDN-------------TVRCWDLREGRQLQQHDFS---SQIFSLGYCPTG  604 (705)
T ss_pred             eeecccCCC--CCceeEEecCCCceeecCCCcc-------------ceeehhhhhhhhhhhhhhh---hhheecccCCCc
Confidence            999998887  5789999999999999999994             9999999998888766543   559999999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      .++++|-.++.+.|..... .....+.-|+..|.++.|.+.|+++++.+.|+.+..|...-+..+...          ..
T Consensus       605 dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----------kE  673 (705)
T KOG0639|consen  605 DWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KE  673 (705)
T ss_pred             cceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----------cc
Confidence            9999999999999988764 445667789999999999999999999999999999999876554433          24


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ...|.++.+|.|.+++++|++|....+|.+
T Consensus       674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            456899999999999999999988888765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.5e-26  Score=204.75  Aligned_cols=280  Identities=14%  Similarity=0.183  Sum_probs=224.9

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccc---cceeeeeccCCceeeeeCC-ccceeEeeccC
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACAT---TATHMGSAEMGQTWASSRP-ALSRFATNMSG   91 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~   91 (458)
                      .-+.|.||..-|..+++ . ++.+++++|.|+++++|+....+..+   ...+.+|.+..    +++. .+...+++|+.
T Consensus         6 ls~~l~gH~~DVr~v~~-~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~----i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAV-T-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANS----ICYAESDKGRLVVGGM   79 (745)
T ss_pred             eEEEeccCccchheeEe-c-CCeEEeecCCCCceeeeeccCcccccceecccCcceeecc----ceeccccCcceEeecc
Confidence            34689999999988887 3 44589999999999999987666553   22355555552    2222 34556899999


Q ss_pred             CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699           92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTV  171 (458)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  171 (458)
                      |..+.+|......                                  ++..|+||...|.|++...++. ++|||.|.++
T Consensus        80 D~~i~v~~~~~~~----------------------------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta  124 (745)
T KOG0301|consen   80 DTTIIVFKLSQAE----------------------------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA  124 (745)
T ss_pred             cceEEEEecCCCC----------------------------------chhhhhccccceeeeecCCcCc-eEecccccce
Confidence            9999998876544                                  6678899999999999888887 9999999999


Q ss_pred             EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeE
Q 012699          172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF  251 (458)
Q Consensus       172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (458)
                      ++|.......    ....|...|+++..-|.+  .+++|+.|.+|++|.-  ++.+.++..|.  ..|+.+++.+++. +
T Consensus       125 kvW~~~~l~~----~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHt--D~VRgL~vl~~~~-f  193 (745)
T KOG0301|consen  125 KVWRIGELVY----SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHT--DCVRGLAVLDDSH-F  193 (745)
T ss_pred             EEecchhhhc----ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccch--hheeeeEEecCCC-e
Confidence            9997654322    356788999999988443  8999999999999965  77888888866  6899999988754 5


Q ss_pred             EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      ++++.|             |.|++|++ +++.+.++  .+|...+.++...+++..++++++|+++++|+..  ++.+.+
T Consensus       194 lScsND-------------g~Ir~w~~-~ge~l~~~--~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I  255 (745)
T KOG0301|consen  194 LSCSND-------------GSIRLWDL-DGEVLLEM--HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI  255 (745)
T ss_pred             EeecCC-------------ceEEEEec-cCceeeee--eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence            566666             69999999 55666655  4888999999988888899999999999999976  777777


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      .-....|+++.+-++|+ +++|+.||.|+||....
T Consensus       256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            76677999999998885 67788999999998874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7e-27  Score=197.70  Aligned_cols=263  Identities=19%  Similarity=0.244  Sum_probs=202.6

Q ss_pred             EeCC-CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699          165 ASVD-GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAWNVDAKRVVCDLNTTDAFPSVLDL  242 (458)
Q Consensus       165 ~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~  242 (458)
                      ++.| .++.+||+.++.......... ...-.++..  -++.+++++.. -..|.+|.+...........  -++++.++
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~-~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v--~Pg~v~al   87 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSY-LAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIV--LPGPVHAL   87 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcc-cccchhhhh--hchhheeeecccCccccccccCchhhhhhhcc--cccceeee
Confidence            3444 459999999987643221110 111111111  13345555544 45789999876554442111  22679999


Q ss_pred             eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeC
Q 012699          243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM  322 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  322 (458)
                      +-+|.|.+++.++..             |.|++|.+.+|..+..+  ..|...|+|+.|+.||.+|++|+.||.|.+|++
T Consensus        88 ~s~n~G~~l~ag~i~-------------g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l  152 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTIS-------------GNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL  152 (476)
T ss_pred             ecCCCceEEEeeccc-------------CcEEEEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence            999999999988766             59999999999999887  478899999999999999999999999999986


Q ss_pred             C---------CCceeeeeeCCCCCeEEEEEcCC--CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          323 S---------AGLQITGWPAHDSAISSILFGPD--ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       323 ~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                      .         +.+++..+..|.-+|+.+...+.  ..+|+|+|.|.++++||+..+..+...          ..+..+.+
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti----------~fp~si~a  222 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI----------TFPSSIKA  222 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE----------ecCCccee
Confidence            3         35678899999999999998775  358999999999999999976444322          34556899


Q ss_pred             EEEccCCCEEEEEeCCccEEEEEccCCC----------------cccccCCCCC--cEEEEEECCCCCeEEEecCCCcEE
Q 012699          392 MALDVNGRRLLVTSGSVRAPIYQVRGHA----------------SGMRTLPHGA--AITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~----------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                      ++++|-++.+++|+.+|.|.+.++....                ....+.+|.+  .|+|++.+-||.+|++|+.||.|+
T Consensus       223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc  302 (476)
T KOG0646|consen  223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC  302 (476)
T ss_pred             EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence            9999999999999999999998876433                1223347888  999999999999999999999999


Q ss_pred             EEeC
Q 012699          454 VMSL  457 (458)
Q Consensus       454 iw~l  457 (458)
                      |||+
T Consensus       303 vWdi  306 (476)
T KOG0646|consen  303 VWDI  306 (476)
T ss_pred             EEec
Confidence            9997

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=201.89  Aligned_cols=310  Identities=19%  Similarity=0.249  Sum_probs=213.3

Q ss_pred             ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC
Q 012699           81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN  160 (458)
Q Consensus        81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  160 (458)
                      .....|+.+..+|.|.+++.......              +..+              .++....|.+.|..+.|-|...
T Consensus        62 n~eHiLavadE~G~i~l~dt~~~~fr--------------~ee~--------------~lk~~~aH~nAifDl~wapge~  113 (720)
T KOG0321|consen   62 NKEHILAVADEDGGIILFDTKSIVFR--------------LEER--------------QLKKPLAHKNAIFDLKWAPGES  113 (720)
T ss_pred             CccceEEEecCCCceeeecchhhhcc--------------hhhh--------------hhcccccccceeEeeccCCCce
Confidence            36778899999999999886553311              1110              2344568999999999999767


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      .|++++.|.++++||+++.+.......+.|...+.+++|.|.+...|++|+.||.|.|||++-...-. +....  ..++
T Consensus       114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~-~e~~~--~~~~  190 (720)
T KOG0321|consen  114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA-LEEFD--NRIY  190 (720)
T ss_pred             eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh-HHHHh--hhhh
Confidence            89999999999999999988876666788899999999999999999999999999999997554111 11000  0000


Q ss_pred             eeee---cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE---EEEccCCCEEEEEec-
Q 012699          241 DLKC---SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS---LCFNHNGKILAASAV-  313 (458)
Q Consensus       241 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-  313 (458)
                      ...-   .|... +.                  ..++-|             ..+...|.+   +.+..|...||+++. 
T Consensus       191 ~~~n~~ptpskp-~~------------------kr~~k~-------------kA~s~ti~ssvTvv~fkDe~tlaSaga~  238 (720)
T KOG0321|consen  191 GRHNTAPTPSKP-LK------------------KRIRKW-------------KAASNTIFSSVTVVLFKDESTLASAGAA  238 (720)
T ss_pred             ccccCCCCCCch-hh------------------cccccc-------------ccccCceeeeeEEEEEeccceeeeccCC
Confidence            0000   00000 00                  011111             122222333   445567778888877 


Q ss_pred             CCeEEEEeCCCCceeee--------eeCC---CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699          314 DGMIHMFDMSAGLQITG--------WPAH---DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       314 dg~i~v~d~~~~~~~~~--------~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  382 (458)
                      |+.|+|||+++......        +..|   .-.+.++.....|.+|++.+.|+.|++|++........     .....
T Consensus       239 D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~-----~~~sg  313 (720)
T KOG0321|consen  239 DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV-----AEFSG  313 (720)
T ss_pred             CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch-----hhccC
Confidence            99999999987543222        2223   22567777777788888888899999999987543211     00111


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~  458 (458)
                      .........-..+||+.+|++|+.|...++|.+...+.. ..+.+|...|++++|.|..- -++++++|-.++||++.
T Consensus       314 ~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  314 KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            111222334567999999999999999999999887654 44559999999999988643 57888999999999973

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-26  Score=208.33  Aligned_cols=280  Identities=14%  Similarity=0.260  Sum_probs=213.8

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-----cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-----YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      .....+..+++-..++.++. ..++||.+............     .....+..+.|..-..++|++++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            44566777888777887764 46888877654332111111     1112456778886778999999999999999998


Q ss_pred             C---CceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          223 A---KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       223 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      .   .+.+..+..|.  ..+.++.|++... ++++|+.|             |.|++||++..+....+.  +....|..
T Consensus       119 k~~rnk~l~~f~EH~--Rs~~~ldfh~tep~iliSGSQD-------------g~vK~~DlR~~~S~~t~~--~nSESiRD  181 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHE--RSANKLDFHSTEPNILISGSQD-------------GTVKCWDLRSKKSKSTFR--SNSESIRD  181 (839)
T ss_pred             ccccchhhhHhhhhc--cceeeeeeccCCccEEEecCCC-------------ceEEEEeeeccccccccc--ccchhhhc
Confidence            7   44545555554  6899999999876 56677777             699999999988877765  45678999


Q ss_pred             EEEcc-CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          299 LCFNH-NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       299 ~~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      +.|+| .+.+|+++...|.+.+||++. .++...+.+|.++|.|+.|+|++.+||||+.|++|+|||+.+......    
T Consensus       182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~----  257 (839)
T KOG0269|consen  182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK----  257 (839)
T ss_pred             eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce----
Confidence            99999 577899999999999999987 456778899999999999999999999999999999999986422110    


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEe---CCccEEEEEccCCCcccccC-CCCCcEEEEEECC-CCCeEEEecCCCc
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTS---GSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHP-TLPMFLTGSADHS  451 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~~~dg~  451 (458)
                          .......++..+.|-|..++.++.+   .|-.|+|||+...-.+...+ .|...++.++|.. |...|.+++.||+
T Consensus       258 ----~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  258 ----HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ----eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence                0112345688999999887655443   36789999998876655444 7999999999966 3448889999998


Q ss_pred             EE
Q 012699          452 VQ  453 (458)
Q Consensus       452 v~  453 (458)
                      |.
T Consensus       334 v~  335 (839)
T KOG0269|consen  334 VL  335 (839)
T ss_pred             HH
Confidence            74

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.95  E-value=4.2e-26  Score=200.16  Aligned_cols=144  Identities=16%  Similarity=0.213  Sum_probs=113.9

Q ss_pred             ecCCeEEEEeCCC-Cceee-eee--CCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699          312 AVDGMIHMFDMSA-GLQIT-GWP--AHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK  386 (458)
Q Consensus       312 ~~dg~i~v~d~~~-~~~~~-~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  386 (458)
                      +..|.|-||+++. |+.-- .+.  .....|+.+.|.| |...|+.+++||.|++|.+..++.......  .......|.
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t--Pe~~lt~h~  677 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT--PEKILTIHG  677 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC--cceeeeccc
Confidence            4457788888765 22211 111  1345799999999 778999999999999999987654332222  112234577


Q ss_pred             CceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          387 SCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       387 ~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ..|+.+.|+| -...|++++.|.+|++||+.+.....++.+|.+.|.+++|||+|+.+|+.+.||+|++|+.
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence            8899999999 4578999999999999999999999999999999999999999999999999999999974

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-25  Score=179.26  Aligned_cols=258  Identities=17%  Similarity=0.275  Sum_probs=190.3

Q ss_pred             ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC--CccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEEEE
Q 012699          144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd  220 (458)
                      .+|.+-|.++.|.+-|+++|+|+.|++|+|||.+.....  .......|.+.|..+.|.+ .-|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            379999999999999999999999999999997544332  2233455788999999964 4689999999999999996


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      -....    ...+.                                       +-|       ...-++......|+.+.
T Consensus        90 E~~~~----~~~~~---------------------------------------~~W-------v~~ttl~DsrssV~DV~  119 (361)
T KOG2445|consen   90 EQEKS----EEAHG---------------------------------------RRW-------VRRTTLVDSRSSVTDVK  119 (361)
T ss_pred             ecccc----ccccc---------------------------------------cee-------EEEEEeecCCcceeEEE
Confidence            43111    11110                                       011       11111234556799999


Q ss_pred             EccC--CCEEEEEecCCeEEEEeCCCCce------eeeee-------CCCCCeEEEEEcC---CCCEEEEecCC-----C
Q 012699          301 FNHN--GKILAASAVDGMIHMFDMSAGLQ------ITGWP-------AHDSAISSILFGP---DETSIFSLGSD-----G  357 (458)
Q Consensus       301 ~~~~--~~~l~~~~~dg~i~v~d~~~~~~------~~~~~-------~~~~~v~~~~~~~---~~~~l~~~~~d-----g  357 (458)
                      |.|.  |-.|++++.||.++||+....-.      ...++       .+..+..|+.|+|   ...+|+.|+.+     +
T Consensus       120 FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~  199 (361)
T KOG2445|consen  120 FAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN  199 (361)
T ss_pred             ecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence            9994  77899999999999999754322      22222       4567889999998   34678888776     4


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC----CEEEEEeCCccEEEEEccCCC--------------
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG----RRLLVTSGSVRAPIYQVRGHA--------------  419 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~~~~i~i~~~~~~~--------------  419 (458)
                      .++||........     .........+..+|+.++|.|+-    .+||+++.|| |+||.+....              
T Consensus       200 ~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~  273 (361)
T KOG2445|consen  200 KVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM  273 (361)
T ss_pred             ceEEEEecCCcce-----eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence            7899988765421     22333444788999999999953    6799999999 9999987311              


Q ss_pred             ------cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          420 ------SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       420 ------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                            .+..+-+|.+.|+.++|+-.|..|++.|.||+||+|.-
T Consensus       274 ~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  274 TDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             cccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence                  01122269999999999999999999999999999963

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-24  Score=192.30  Aligned_cols=287  Identities=17%  Similarity=0.259  Sum_probs=234.8

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ..+-+.--..+|.+|+|+.+.+.||.+-.||.|.+|++...-.............|.+++|.  ++..|++.+.+|.|.-
T Consensus        17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~E   94 (691)
T KOG2048|consen   17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITE   94 (691)
T ss_pred             EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEE
Confidence            33444556788999999999999999999999999999876554443444455789999998  4667889999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||+.+++....+....  +.+++++.+|.+..++.++.+             |.+..++...++......+....+.+.+
T Consensus        95 wDl~~lk~~~~~d~~g--g~IWsiai~p~~~~l~Igcdd-------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   95 WDLHTLKQKYNIDSNG--GAIWSIAINPENTILAIGCDD-------------GVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             EecccCceeEEecCCC--cceeEEEeCCccceEEeecCC-------------ceEEEEecCCceEEEEeecccccceEEE
Confidence            9999999988887766  789999999999999999877             6888888888777776666667789999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-------C-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-------A-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ++|+|++..++.|+.||.|++||..++..+....       . ...-|+++.|-.++ .|++|..-|+|.+||...+...
T Consensus       160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI  238 (691)
T ss_pred             EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence            9999999999999999999999999887766221       1 23357777777565 8999999999999999865322


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc----cccCCCCCcEEEEEECCCCCeEEEe
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG----MRTLPHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~s~  446 (458)
                               ....-+...|.+++..+++.++++++-|+.+..|...+....    .....|...|.+++..++  .|++|
T Consensus       239 ---------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg  307 (691)
T KOG2048|consen  239 ---------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISG  307 (691)
T ss_pred             ---------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEec
Confidence                     223357788999999999999999999999999988776542    223368899999999887  89999


Q ss_pred             cCCCcEEE
Q 012699          447 SADHSVQV  454 (458)
Q Consensus       447 ~~dg~v~i  454 (458)
                      |.|..+.+
T Consensus       308 G~d~~l~i  315 (691)
T KOG2048|consen  308 GRDFTLAI  315 (691)
T ss_pred             ceeeEEEE
Confidence            99998876

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-26  Score=179.11  Aligned_cols=244  Identities=14%  Similarity=0.236  Sum_probs=195.8

Q ss_pred             CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcc
Q 012699          190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSN  264 (458)
Q Consensus       190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~  264 (458)
                      |...|..+... --+.+|++++.|++|+|+.++.+..   +.++..+.  +++..++|..  .|.+|++++.|       
T Consensus        10 H~D~IHda~lD-yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk~G~iLAScsYD-------   79 (299)
T KOG1332|consen   10 HEDMIHDAQLD-YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPKFGTILASCSYD-------   79 (299)
T ss_pred             hhhhhhHhhhh-hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccccCcEeeEeecC-------
Confidence            44445544444 4588999999999999999987653   44555544  8999999987  78999999999       


Q ss_pred             eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCC---ceeeeeeCCCCCeE
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAG---LQITGWPAHDSAIS  339 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~  339 (458)
                            |.|.||.-.+++-.+......|...|++++|.|.  |-.|++++.||.|.|.+.+..   ...+....|.-.|+
T Consensus        80 ------gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn  153 (299)
T KOG1332|consen   80 ------GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN  153 (299)
T ss_pred             ------ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence                  5999999999877777777789999999999995  678999999999999998764   22334568999999


Q ss_pred             EEEEcCC---C-----------CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC----CEE
Q 012699          340 SILFGPD---E-----------TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG----RRL  401 (458)
Q Consensus       340 ~~~~~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l  401 (458)
                      +++|.|-   |           +.|++|+.|..|+||+..+..   +.    .......|...|..++|.|.-    .+|
T Consensus       154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~----~e~~l~~H~dwVRDVAwaP~~gl~~s~i  226 (299)
T KOG1332|consen  154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WK----LERTLEGHKDWVRDVAWAPSVGLPKSTI  226 (299)
T ss_pred             eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---hh----hhhhhhhcchhhhhhhhccccCCCceee
Confidence            9999984   4           569999999999999998751   11    112256799999999999964    579


Q ss_pred             EEEeCCccEEEEEccCCCcccc---cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          402 LVTSGSVRAPIYQVRGHASGMR---TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       402 ~~~~~~~~i~i~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      |+++.||++.||..+......+   +......+..++||+.|+.|+.++.|..|.+|.
T Consensus       227 AS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  227 ASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             EEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9999999999998874322221   224567899999999999999999999999996

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=8.3e-26  Score=190.78  Aligned_cols=212  Identities=15%  Similarity=0.292  Sum_probs=169.3

Q ss_pred             eeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      ..|.||.+.=+.++|++.. -.|++++.|++|++||+.....     ..+.....|...|..++|++.+..++.+++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            4577899888889999953 4689999999999999976543     122334457788999999999999999999999


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      .+.|||++++..........+...+.+++|+|-+. .||+++.|             ++|.+||+++... +...+.+|.
T Consensus       251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D-------------~tV~LwDlRnL~~-~lh~~e~H~  316 (422)
T KOG0264|consen  251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD-------------KTVALWDLRNLNK-PLHTFEGHE  316 (422)
T ss_pred             eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC-------------CcEEEeechhccc-CceeccCCC
Confidence            99999999542222233334448899999999765 56667767             5999999998665 444567899


Q ss_pred             CcEEEEEEccC-CCEEEEEecCCeEEEEeCCC-C-------------ceeeeeeCCCCCeEEEEEcCCCCE-EEEecCCC
Q 012699          294 PAITSLCFNHN-GKILAASAVDGMIHMFDMSA-G-------------LQITGWPAHDSAISSILFGPDETS-IFSLGSDG  357 (458)
Q Consensus       294 ~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~-~-------------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg  357 (458)
                      ..|.++.|+|. ...|++++.|+.+.|||+.. +             +++....+|...|..+.|+|+..+ +++.+.|+
T Consensus       317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN  396 (422)
T KOG0264|consen  317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN  396 (422)
T ss_pred             cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence            99999999995 56889999999999999864 1             235666799999999999997764 67888999


Q ss_pred             eEEEEeccC
Q 012699          358 KIIEWSLQN  366 (458)
Q Consensus       358 ~i~iwd~~~  366 (458)
                      .+.||.+..
T Consensus       397 ~LqIW~~s~  405 (422)
T KOG0264|consen  397 ILQIWQMAE  405 (422)
T ss_pred             eEEEeeccc
Confidence            999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=6.4e-26  Score=197.56  Aligned_cols=319  Identities=14%  Similarity=0.183  Sum_probs=228.1

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccC
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSG   91 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (458)
                      ..++||...|.|+.. .+.|.+||+|+.||+++||.+.+++++      +.|..++|.|.+..-.         ||++-.
T Consensus       394 lvyrGHtg~Vr~iSv-dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~v---------LAvA~~  463 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISV-DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCV---------LAVAVG  463 (733)
T ss_pred             eeEeccCCeEEEEEe-cCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCcee---------EEEEec
Confidence            467899999999999 999999999999999999999999877      6677888888754322         222211


Q ss_pred             CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEE----eC
Q 012699           92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASA----SV  167 (458)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~  167 (458)
                      .. +-+-+-.+.+                    .                           +.--+....|+++    ..
T Consensus       464 ~~-~~ivnp~~G~--------------------~---------------------------~e~~~t~ell~~~~~~~~p  495 (733)
T KOG0650|consen  464 EC-VLIVNPIFGD--------------------R---------------------------LEVGPTKELLASAPNESEP  495 (733)
T ss_pred             Cc-eEEeCccccc--------------------h---------------------------hhhcchhhhhhcCCCccCC
Confidence            11 1111111100                    0                           0000001111111    23


Q ss_pred             CCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699          168 DGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLNTTDAFPSVLDL  242 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~v~~~  242 (458)
                      |+.+..|.-.......  ....+.+..+|..+.|+ ..|.+|++...+   ..|.|+++........+....  +.+.++
T Consensus       496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v  572 (733)
T KOG0650|consen  496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRV  572 (733)
T ss_pred             cccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEE
Confidence            4566777644222211  22456688899999999 889999997664   478899988776655554443  679999


Q ss_pred             eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeC
Q 012699          243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM  322 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~  322 (458)
                      .|+|...+++.++..              .|++||+.....++.+.  .....|..++++|.|.-|++|+.|+.+..||+
T Consensus       573 ~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~--tg~kwiS~msihp~GDnli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  573 KFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLL--TGSKWISSMSIHPNGDNLILGSYDKKMCWFDL  636 (733)
T ss_pred             EecCCCceEEEEecc--------------ceEEEehhHHHHHHHHh--cCCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence            999999999999886              99999999877766653  34467999999999999999999999999999


Q ss_pred             CC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC----CCceeEEEEccC
Q 012699          323 SA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS----KSCRHEMALDVN  397 (458)
Q Consensus       323 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~  397 (458)
                      .- .++.++++-|...+++++|++.-.+|++|+.||++.|+--.-...++.......+....+|    ...|....|+|.
T Consensus       637 dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~  716 (733)
T KOG0650|consen  637 DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR  716 (733)
T ss_pred             ccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence            75 4678889999999999999999999999999999998854321111100001111112223    345888999999


Q ss_pred             CCEEEEEeCCccEEEE
Q 012699          398 GRRLLVTSGSVRAPIY  413 (458)
Q Consensus       398 g~~l~~~~~~~~i~i~  413 (458)
                      ..+|++++.||+|++|
T Consensus       717 qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  717 QPWLFSAGADGTIRLF  732 (733)
T ss_pred             CceEEecCCCceEEee
Confidence            9999999999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2e-25  Score=200.21  Aligned_cols=292  Identities=16%  Similarity=0.245  Sum_probs=213.0

Q ss_pred             eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeee----eCCccceeEeeccCCCccccccccc
Q 012699           27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWAS----SRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      .++|+. .++-..++.++ -..++|+..+.........+..-..+...+..    -+.-...+||+++..|.|.+||+..
T Consensus        42 ~nAIs~-nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   42 ANAISV-NRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             cceEee-cCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            455666 55555555444 24566666655544322222211111111111    1123678999999999999999976


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCC
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTP  181 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~  181 (458)
                      ..                               +-+.+..|..|+..|+++.|++. ..+|++|+.||+|++||++....
T Consensus       120 ~~-------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen  120 SI-------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             cc-------------------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            21                               01144567899999999999984 56799999999999999987765


Q ss_pred             CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699          182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY  260 (458)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      ..  ........|..+.|+|..+..++++...|.+.+||++... +...+..|  .++|.++.|+|++.+|++|+.|+  
T Consensus       169 ~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhPnr~~lATGGRDK--  242 (839)
T KOG0269|consen  169 KS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHPNREWLATGGRDK--  242 (839)
T ss_pred             cc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecCCCceeeecCCCc--
Confidence            43  3334567899999999999999999999999999998644 44444444  48999999999999999999884  


Q ss_pred             CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE-EEEEec--CCeEEEEeCCCC-ceeeeeeCCCC
Q 012699          261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI-LAASAV--DGMIHMFDMSAG-LQITGWPAHDS  336 (458)
Q Consensus       261 ~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~--dg~i~v~d~~~~-~~~~~~~~~~~  336 (458)
                                 .|+|||+.+.+........ ...++.++.|-|...+ |++++.  |-.|+|||++.. -+..++..|..
T Consensus       243 -----------~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~  310 (839)
T KOG0269|consen  243 -----------MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD  310 (839)
T ss_pred             -----------cEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence                       9999999977766555443 3367999999997654 555443  778999999753 55778899999


Q ss_pred             CeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCe
Q 012699          337 AISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       337 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      .++.++|.. |...|.+++.||++..-.+++...
T Consensus       311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             cccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            999999965 456788999999987777765433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.2e-24  Score=195.36  Aligned_cols=249  Identities=14%  Similarity=0.262  Sum_probs=197.8

Q ss_pred             cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          189 YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       189 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      .|....+.++|. +++..|++++.||.|++|+.... +...++....  ..+.+++..  ...|++++.+          
T Consensus        11 aht~G~t~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~--s~~f~~~s~~----------   75 (933)
T KOG1274|consen   11 AHTGGLTLICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACY--SNHFLTGSEQ----------   75 (933)
T ss_pred             hccCceEEEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeec--ccceEEeecc----------
Confidence            456668899999 77789999999999999998766 3333333222  345555544  4478888777          


Q ss_pred             ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC
Q 012699          268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE  347 (458)
Q Consensus       268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  347 (458)
                         ++|.+|...+++.-..+.  ...-++++++++.+|++++.|+.|-.|++.++.+......+++|.++|.++.|+|.+
T Consensus        76 ---~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   76 ---NTVLRYKFPSGEEDTILA--RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             ---ceEEEeeCCCCCccceee--eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence               599999998877654432  223458999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-
Q 012699          348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-  426 (458)
Q Consensus       348 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-  426 (458)
                      ++||+.+-||.|++||+.++............ ........+..++|+|+|..+++...++.|.+|+..+......+.. 
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~  229 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK  229 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCcc-ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence            99999999999999999976543322211111 1111245677899999999999999999999999999877666663 


Q ss_pred             -CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          427 -HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       427 -h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                       +...+..++|+|.|++||+++.||.|.|||.+
T Consensus       230 ~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  230 LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence             44559999999999999999999999999974

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.2e-24  Score=171.63  Aligned_cols=273  Identities=13%  Similarity=0.256  Sum_probs=194.3

Q ss_pred             cCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccc
Q 012699           21 KNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKL  100 (458)
Q Consensus        21 ~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  100 (458)
                      .+|.+-|+|+.| ...|+.+|+|+.|++++|||....             +           +.+             . 
T Consensus        10 s~h~DlihdVs~-D~~GRRmAtCSsDq~vkI~d~~~~-------------s-----------~~W-------------~-   50 (361)
T KOG2445|consen   10 SGHKDLIHDVSF-DFYGRRMATCSSDQTVKIWDSTSD-------------S-----------GTW-------------S-   50 (361)
T ss_pred             cCCcceeeeeee-cccCceeeeccCCCcEEEEeccCC-------------C-----------Cce-------------E-
Confidence            468999999999 999999999999999999986433             0           111             1 


Q ss_pred             ccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEecCC
Q 012699          101 EFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS--SGNNIASASVDGTVRIWTYDS  178 (458)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~  178 (458)
                                                            +....+.|.+.|..+.|.+  =|+.+|+++.|++++||.-..
T Consensus        51 --------------------------------------~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~   92 (361)
T KOG2445|consen   51 --------------------------------------CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE   92 (361)
T ss_pred             --------------------------------------EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence                                                  3335678999999999965  389999999999999997521


Q ss_pred             CC-------CCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699          179 ST-------PASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       179 ~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      ..       -............|+.+.|.|. -+-.|++++.||.+|||+....-                         
T Consensus        93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------  147 (361)
T KOG2445|consen   93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------  147 (361)
T ss_pred             cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-------------------------
Confidence            11       1112233445678999999974 46688999999999999865332                         


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC---CCEEEEEecC-----CeEEEEeC
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN---GKILAASAVD-----GMIHMFDM  322 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~v~d~  322 (458)
                                           .+.-|.+...-.....+...+..+..|+.|+|.   ..+|++|+.+     +.++||..
T Consensus       148 ---------------------nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  148 ---------------------NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             ---------------------ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence                                 222232221000001112234456788899873   4688888766     47888876


Q ss_pred             CCC----ceeeeeeCCCCCeEEEEEcCC----CCEEEEecCCCeEEEEeccCCCeeE-----------EeecCCcccCCC
Q 012699          323 SAG----LQITGWPAHDSAISSILFGPD----ETSIFSLGSDGKIIEWSLQNQGQVL-----------WTRNCSRFCDPE  383 (458)
Q Consensus       323 ~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~  383 (458)
                      ...    ..+..+.+|+.+|+.++|.|+    -..||+++.|| |+||.+......+           .......+....
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            542    346677899999999999994    34699999999 9999998422111           111122333456


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      .|...|..+.|+-.|..|++.+.||.|++|...-
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            7889999999999999999999999999998653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=7.9e-25  Score=186.73  Aligned_cols=264  Identities=18%  Similarity=0.260  Sum_probs=203.4

Q ss_pred             eEEEEeCCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          150 ISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       150 v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      +.++.|+....+ +++.+.|..+++|.-....+.........+..-.|++.. ....++++|+..+.|+|||++...+.+
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~hr  115 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIHR  115 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh-hcceeeeccCcCceeeehhhHHHHHhh
Confidence            889999876542 344467888999975443221111111122233344433 344789999999999999999777777


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-E
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-I  307 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  307 (458)
                      .++.|.  ..|+++.++-...++++++..             |.|.+..+.++.....+... ....+.-+.|+|..+ +
T Consensus       116 ~lkdh~--stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~-sgqsvRll~ys~skr~l  179 (673)
T KOG4378|consen  116 FLKDHQ--STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTID-SGQSVRLLRYSPSKRFL  179 (673)
T ss_pred             hccCCc--ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecC-CCCeEEEeeccccccee
Confidence            777666  789999999999999999877             69999999998888888643 335678899999765 4


Q ss_pred             EEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      |.+++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|..|.+||.+......          ....
T Consensus       180 L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~y  249 (673)
T KOG4378|consen  180 LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLTY  249 (673)
T ss_pred             eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eeee
Confidence            567889999999999887776654 58999999999999 55678899999999999998653322          1234


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCC
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTL  440 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~  440 (458)
                      ..+...++|+++|.+|++|+..|.|..||++..+.+.... .|...|++++|-|.-
T Consensus       250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            4567889999999999999999999999999887665555 899999999998764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=6.9e-24  Score=179.72  Aligned_cols=263  Identities=16%  Similarity=0.227  Sum_probs=206.3

Q ss_pred             CEEEEEe-CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc
Q 012699          160 NNIASAS-VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS  238 (458)
Q Consensus       160 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  238 (458)
                      .+++++. .-..+.+|.+.......  .....++++.+++-+ +.+.+++.|+..|.|++|.+.+|..+..+..|  +..
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~  125 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQS  125 (476)
T ss_pred             hheeeecccCccccccccCchhhhh--hhcccccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhh--ccc
Confidence            4666654 34478899886554332  234457889999988 78899999889999999999999999888554  478


Q ss_pred             eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCCCcEEEEEEccC--CCEEE
Q 012699          239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDPPAITSLCFNHN--GKILA  309 (458)
Q Consensus       239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~  309 (458)
                      |+++.|+.|+.++++++.|             |.|.+|++.+       ........+..|.-+|+.+...+.  ..+++
T Consensus       126 ITcL~fs~dgs~iiTgskD-------------g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~  192 (476)
T KOG0646|consen  126 ITCLKFSDDGSHIITGSKD-------------GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY  192 (476)
T ss_pred             eeEEEEeCCCcEEEecCCC-------------ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence            9999999999999999999             6999997632       233334445688889999988875  46899


Q ss_pred             EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE-------eecCCcccCC
Q 012699          310 ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW-------TRNCSRFCDP  382 (458)
Q Consensus       310 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~  382 (458)
                      +++.|.++++||+..+..+.++. ...++.+++.+|-++.++.|+.+|.|.+.++.+......       ..........
T Consensus       193 TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~  271 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL  271 (476)
T ss_pred             EecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence            99999999999999999888875 467899999999999999999999999998875431100       0111122333


Q ss_pred             CCCCC--ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          383 ESSKS--CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       383 ~~~~~--~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      .+|..  .|++++++-||.+|++|+.||.++|||+.+.+.+..+..-.++|+.+.+.|-.+
T Consensus       272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            45555  999999999999999999999999999998866655555678999999866544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.5e-23  Score=167.48  Aligned_cols=219  Identities=16%  Similarity=0.268  Sum_probs=172.6

Q ss_pred             ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc----------eeeec---cCCCCCCceeeeeecCCCC-eEEE
Q 012699          188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR----------VVCDL---NTTDAFPSVLDLKCSPVEP-IFVS  253 (458)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----------~~~~~---~~~~~~~~v~~~~~~~~~~-~~~~  253 (458)
                      ..|++.|+++...+..++++++|+.||.|.+||++.-.          ..+.+   ....|.-.|.++.|-|-.. ++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35678899999998899999999999999999997643          11111   1122334688899998665 5556


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCCCceeee
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN---GKILAASAVDGMIHMFDMSAGLQITG  330 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~  330 (458)
                      ++.|.             ++++||..+.+....|++++   .|.+-+++|-   ..++|+|..+-.|++.|+.+|..-..
T Consensus       120 sSFDh-------------tlKVWDtnTlQ~a~~F~me~---~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~  183 (397)
T KOG4283|consen  120 SSFDH-------------TLKVWDTNTLQEAVDFKMEG---KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT  183 (397)
T ss_pred             ccccc-------------eEEEeecccceeeEEeecCc---eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence            66664             99999999999888887654   4888888883   45788899999999999999999999


Q ss_pred             eeCCCCCeEEEEEcCCCCE-EEEecCCCeEEEEeccCCCeeEEeecC------CcccCCCCCCCceeEEEEccCCCEEEE
Q 012699          331 WPAHDSAISSILFGPDETS-IFSLGSDGKIIEWSLQNQGQVLWTRNC------SRFCDPESSKSCRHEMALDVNGRRLLV  403 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~~g~~l~~  403 (458)
                      +.+|.+.|.++.|+|...+ |++|+.||.|++||++...-.......      +.......|.+.+..++|+.+|.++++
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence            9999999999999997765 779999999999999975332222111      122234567889999999999999999


Q ss_pred             EeCCccEEEEEccCCCccc
Q 012699          404 TSGSVRAPIYQVRGHASGM  422 (458)
Q Consensus       404 ~~~~~~i~i~~~~~~~~~~  422 (458)
                      .+.|.++++|+...+....
T Consensus       264 ~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             ccCccceEEeecccCcccc
Confidence            9999999999998765443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.9e-26  Score=201.98  Aligned_cols=242  Identities=19%  Similarity=0.392  Sum_probs=209.2

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+.  ....|..+|.++.|+ ....+|++|..+|+|+
T Consensus        19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--S~~~hespIeSl~f~-~~E~LlaagsasgtiK   95 (825)
T KOG0267|consen   19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--SLTGHESPIESLTFD-TSERLLAAGSASGTIK   95 (825)
T ss_pred             ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--eeeccCCcceeeecC-cchhhhcccccCCcee
Confidence            3445666899999999987788899999999999999886555432  356788999999999 7888999999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +||++..+.++++..+.  ..+..+.|+|-+.+++.++.+             +.+++||.+...+...+.  +|...+.
T Consensus        96 ~wDleeAk~vrtLtgh~--~~~~sv~f~P~~~~~a~gStd-------------td~~iwD~Rk~Gc~~~~~--s~~~vv~  158 (825)
T KOG0267|consen   96 VWDLEEAKIVRTLTGHL--LNITSVDFHPYGEFFASGSTD-------------TDLKIWDIRKKGCSHTYK--SHTRVVD  158 (825)
T ss_pred             eeehhhhhhhhhhhccc--cCcceeeeccceEEecccccc-------------ccceehhhhccCceeeec--CCcceeE
Confidence            99999999888877765  678999999999999988888             499999999888888775  5888999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .+.|+|+|++++.|++|..+++||+..|+....|+.|++.+..+.|+|..-++++|+.|+++++||+++.....      
T Consensus       159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~------  232 (825)
T KOG0267|consen  159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS------  232 (825)
T ss_pred             EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999653322      


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                         ........|.+.+|+|+++.+++|....
T Consensus       233 ---s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  233 ---SGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ---ccCCccCCceeeeecCCceeeecCchhh
Confidence               1223466799999999999998876653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=8.3e-24  Score=174.48  Aligned_cols=210  Identities=24%  Similarity=0.385  Sum_probs=167.0

Q ss_pred             ccCCCCeEEEEeCCCC--CEEEEEeCCCcEEEEecCCCC--------------CCCccccccCCCceEEEEEecCCCeEE
Q 012699          144 LGHTSPISCCRFSSSG--NNIASASVDGTVRIWTYDSST--------------PASRNATIYCGTEIMSLEWECKSDRLL  207 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l  207 (458)
                      -.|.+.++.+..++-+  .+.++-+..|.|+||++...-              .........|...-+.++|+|.....|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3688888888877754  456666889999999975321              011122334566788999998777779


Q ss_pred             EEEcCCCcEEEEEcCCCceeee-ccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          208 LIGTADGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       208 ~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                      ++|.--+.|++|...++..... .....|...|.+++|+|... .|++++.|             |+|+|||++.+....
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D-------------gsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD-------------GSIRIWDIRSGPKKA  294 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC-------------ceEEEEEecCCCccc
Confidence            9998889999999988764322 22233557899999999876 77788888             699999999986655


Q ss_pred             EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC---CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeEEE
Q 012699          286 VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKIIE  361 (458)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i  361 (458)
                      .+....|...|+.+.|+.+..+|++|+.||+++|||+++   ++++..++-|..+|++|.|+|. ...|++++.|..|.+
T Consensus       295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            555578999999999999888999999999999999986   6789999999999999999994 457888899999999


Q ss_pred             EeccC
Q 012699          362 WSLQN  366 (458)
Q Consensus       362 wd~~~  366 (458)
                      ||+.-
T Consensus       375 WDlsv  379 (440)
T KOG0302|consen  375 WDLSV  379 (440)
T ss_pred             EEeec
Confidence            99974

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.7e-25  Score=204.68  Aligned_cols=296  Identities=20%  Similarity=0.302  Sum_probs=234.1

Q ss_pred             ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC-------cccceeeeccCCCCcCCCc----ceec
Q 012699           61 TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG-------AGDIIQMFNDGLYTENGRD----AQGE  129 (458)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~----~~~~  129 (458)
                      .+...++|+|.+..+...+...+.+=.+.+.+.++.+|.+++....       .......+++.+|.+.|..    ++.+
T Consensus         7 ~Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen    7 SRTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             cccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc
Confidence            3445678888876555566556666667788889999988776533       1233345678888888887    7888


Q ss_pred             cCCCeeee------------eeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE
Q 012699          130 EDFPEVKV------------DFLETFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS  196 (458)
Q Consensus       130 ~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~  196 (458)
                      .+++.+.+            ..+.++..|++.|..+.|++.+. .||+|+.||.|.|||+...+.............|.+
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~  166 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC  166 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence            88888777            34566788999999999999654 999999999999999987554433333335678999


Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEE
Q 012699          197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTV  275 (458)
Q Consensus       197 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i  275 (458)
                      ++|+......|++++.+|...|||++..+.+..+..+.....+..+.|+|+.. .+++++.|...          -.|.+
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~----------Pviql  236 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA----------PVIQL  236 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC----------ceeEe
Confidence            99997778899999999999999999998887777665545688999999876 45555554322          48999


Q ss_pred             EECCCCc-eeEEeecCCCCCcEEEEEEccCC-CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCC-EEEE
Q 012699          276 WNMKTWK-AMTVLPLGEDPPAITSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET-SIFS  352 (458)
Q Consensus       276 ~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  352 (458)
                      ||++... +.+++  ..|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+....+.+..+.|.|... .++.
T Consensus       237 WDlR~assP~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~  314 (1049)
T KOG0307|consen  237 WDLRFASSPLKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAA  314 (1049)
T ss_pred             ecccccCCchhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhh
Confidence            9998633 44444  5788999999999966 8899999999999999999999999998889999999999655 7888


Q ss_pred             ecCCCeEEEEeccCCC
Q 012699          353 LGSDGKIIEWSLQNQG  368 (458)
Q Consensus       353 ~~~dg~i~iwd~~~~~  368 (458)
                      ++-||.|.||.+....
T Consensus       315 asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  315 ASFDGKISIYSLQGTD  330 (1049)
T ss_pred             heeccceeeeeeecCC
Confidence            8889999999998654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.7e-23  Score=166.21  Aligned_cols=249  Identities=13%  Similarity=0.187  Sum_probs=181.5

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      .+.+|..+|++++||+||+.|+|+|.|..|.+||+..+.+..   .+...++|+.+.|+|.+.+.+++.-.+..-.+-++
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~---rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~  136 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK---RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF  136 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee---EEEccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence            466899999999999999999999999999999999988654   45567899999999888888777777666666666


Q ss_pred             CCCceeeeccCCCC---CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          222 DAKRVVCDLNTTDA---FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       222 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ..++... +.....   .....+..|.+.|+++++|...             |.+.++|..+.+++..++... ...|..
T Consensus       137 s~~~h~~-Lp~d~d~dln~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-~~~IK~  201 (405)
T KOG1273|consen  137 SDPKHSV-LPKDDDGDLNSSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-VQAIKQ  201 (405)
T ss_pred             cCCceee-ccCCCccccccccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-heeeeE
Confidence            6533221 111110   1112234577777777777665             799999999999988887544 356899


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCC-------Cce--eeeee--CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSA-------GLQ--ITGWP--AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQN  366 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~-------~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  366 (458)
                      +.++..|+.|+.-+.|..|+.|+++.       +++  .+.++  .....-.+++|+.+|.|++.++. -..++||.-..
T Consensus       202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence            99999999999999999999999863       111  12221  11224467889999999887775 45699999887


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      +..+.....        ........+.|+|-...+++. ..|.+++|....
T Consensus       282 GsLVKILhG--------~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  282 GSLVKILHG--------TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             cceeeeecC--------Cchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            644432211        112345678899988888776 778999998753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=174.39  Aligned_cols=300  Identities=13%  Similarity=0.191  Sum_probs=226.1

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC------CCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS------TPASRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      +.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++..      +++. .....|...|.+++|. .....+++|..
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~-~~N~~~~SG~~  125 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFD-LENRFLYSGER  125 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEc-cCCeeEecCCC
Confidence            44567799999999999999999999999999999998532      2221 1222344789999999 77889999999


Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGE  291 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~  291 (458)
                      +++|..-|+++.+.+..+......+.|+.+..+|..+.+++.+.+             +.|.+||.+... +...+-...
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-------------~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA-------------KLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC-------------ceEEEEeccCCCCCCceeeecC
Confidence            999999999999998888777777899999999999999998888             599999998755 333333344


Q ss_pred             CCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc-eeee------eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          292 DPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL-QITG------WPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       292 ~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~-~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      .......+.|+|. ..+|++.+..+-+-+||.+..+ ++..      ++.....-.++.|+|+|..|++.-....-.+||
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD  272 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence            5566888999995 5678888888999999998643 2222      121122346789999999999887777778889


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC-----------------------c
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA-----------------------S  420 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~-----------------------~  420 (458)
                      +-....+........  ..--....+.+++|-.|-. +++|+.+-.|++|.+....                       .
T Consensus       273 ~~S~R~~V~k~D~N~--~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~  349 (609)
T KOG4227|consen  273 FISQRCFVLKSDHNP--NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE  349 (609)
T ss_pred             eecccceeEeccCCC--Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence            887544433222100  0001123456677765544 8899999999999885211                       1


Q ss_pred             ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ...+.+|..-++.+.|+|...+|++.|-...++||.
T Consensus       350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  350 LTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eEEEecccccccceeecCCcceEeccchhhheeccc
Confidence            123348999999999999999999999999999996

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=9.1e-21  Score=177.67  Aligned_cols=371  Identities=20%  Similarity=0.368  Sum_probs=272.2

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEecccccc-ccccceeeeeccCCceeeeeCCccce-eEeec-cCCCcc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEA-CATTATHMGSAEMGQTWASSRPALSR-FATNM-SGNDSI   95 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~~~~i   95 (458)
                      .+..|...|.++.+ .+++..++.++.|+.+.+|+..... ....+..... ..-..+... ..+.. ++... ..++.+
T Consensus        60 ~~~~~~~~i~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAF-SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEE-CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccE
Confidence            56789999999999 9999999999999999999998885 2211111110 011122222 33333 44443 448888


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeC-CCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASV-DGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw  174 (458)
                      .+|++..                                 .......+..|...|..++|+|+++.+++++. |+.+++|
T Consensus       137 ~~~~~~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  183 (466)
T COG2319         137 KLWDLST---------------------------------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW  183 (466)
T ss_pred             EEEEecC---------------------------------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEE
Confidence            8888754                                 01155677899999999999999998888885 9999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCe-EEEEEcCCCcEEEEEcCCCceee-eccCCCCCCceeeeeecCCCCeEE
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKRVVC-DLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      ++.......  ....+...+.+++|+ +++. .+++++.|+.+++||...+.... .+..+..  .. ...|+|++..++
T Consensus       184 ~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~  257 (466)
T COG2319         184 DLRTGKPLS--TLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLA  257 (466)
T ss_pred             EcCCCceEE--eeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEE
Confidence            998744432  223367889999999 5555 55555999999999988777776 4555543  22 228999998888


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      +++.+             +.+++|+...... ...+  ..|...+.++.|+|++..+++++.|+.+.+||..+.......
T Consensus       258 ~~~~d-------------~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         258 SGSSD-------------GTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             EecCC-------------CcEEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            77777             5999999987665 3333  456788999999998888888999999999999887766666


Q ss_pred             e--CCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE-EeCC
Q 012699          332 P--AHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV-TSGS  407 (458)
Q Consensus       332 ~--~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~  407 (458)
                      .  .|...+..+.|.+++..++.+ ..|+.+.+|++.... .....         .....+..+.+++ ...+.. +..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~  391 (466)
T COG2319         323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTL---------EGHSNVLSVSFSP-DGRVVSSGSTD  391 (466)
T ss_pred             eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEe---------cCCceEEEEEECC-CCCEEEEecCC
Confidence            5  788889999994343456655 678999999998765 11111         0111178888988 533433 5778


Q ss_pred             ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          408 VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       408 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +.+.+|+............+...+....+++++..+++++.++.+++|++
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (466)
T COG2319         392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL  441 (466)
T ss_pred             CceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence            99999999887655554444378999999999999999999999999986

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4e-25  Score=196.78  Aligned_cols=255  Identities=16%  Similarity=0.287  Sum_probs=212.6

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCce
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSV  239 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v  239 (458)
                      .+++....+-.+++||....        ..|...+.++..- ...+.+++|+.|..+.+|.+.....+..+..+.  .+|
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--spI   73 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREF--------VAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE--SPI   73 (825)
T ss_pred             cccceeeeeeccccccchhh--------hhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccC--Ccc
Confidence            34445555566778876432        2344556666653 677889999999999999987766666655555  899


Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM  319 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  319 (458)
                      .++.|++...+++++..+             |.|++||++..+.+..+  .+|...+.++.|+|-+.+++.|+.|+.+.+
T Consensus        74 eSl~f~~~E~Llaagsas-------------gtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~~a~gStdtd~~i  138 (825)
T KOG0267|consen   74 ESLTFDTSERLLAAGSAS-------------GTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEFFASGSTDTDLKI  138 (825)
T ss_pred             eeeecCcchhhhcccccC-------------Cceeeeehhhhhhhhhh--hccccCcceeeeccceEEecccccccccee
Confidence            999999999999999988             59999999998888765  478888999999999999999999999999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699          320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      ||.+..-+.+.+.+|...+..+.|+|+|++++.+++|..+++||+..++..         .....|...+..+.|+|..-
T Consensus       139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---------~ef~~~e~~v~sle~hp~e~  209 (825)
T KOG0267|consen  139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---------KEFKSHEGKVQSLEFHPLEV  209 (825)
T ss_pred             hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc---------cccccccccccccccCchhh
Confidence            999988899999999999999999999999999999999999999865322         23345778899999999999


Q ss_pred             EEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          400 RLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       400 ~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      +++.|+.|+++++||+++.+.+....+....|.+.+|+|+++.+++|..+
T Consensus       210 Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  210 LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            99999999999999999876666666667899999999999988887654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.92  E-value=1.9e-23  Score=164.31  Aligned_cols=293  Identities=15%  Similarity=0.170  Sum_probs=201.8

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      +...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+....... ...+...|..+.-. ++ ..+.+-+.|+.+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~-r~~g~~~it~lq~~-p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLI-RLFGRLFITNLQSI-PN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhh-hhhccceeeceeec-CC-cchhhcCCCceEEE
Confidence            4556789999999999988764 889999999999999988765322 22345667777766 33 56889999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeec-----CCCC----eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCS-----PVEP----IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-  288 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-  288 (458)
                      |++..+..+..-.     -.+.++.|.     ++.+    .++.-+...            -.+.+-|......+.... 
T Consensus        82 w~ia~s~~i~i~S-----i~~nslgFCrfSl~~~~k~~eqll~yp~rgs------------de~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   82 WTIAYSAFISIHS-----IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS------------DETHKQDGGDTTQVQIADD  144 (323)
T ss_pred             EEccCcceEEEee-----eeccccccccceeccCCCcchhheecCCccc------------chhhhhccCccceeEccCc
Confidence            9998755433221     112222222     2211    111111110            011222222111111111 


Q ss_pred             -cCCCCCcEEEEEEcc-CCC--EEEEEecCCeEEEEeCCCCce----------eeeeeCCCCCeEEEEEcCCCCEEEEec
Q 012699          289 -LGEDPPAITSLCFNH-NGK--ILAASAVDGMIHMFDMSAGLQ----------ITGWPAHDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       289 -~~~~~~~i~~~~~~~-~~~--~l~~~~~dg~i~v~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~  354 (458)
                       -....+.++|..+.. ++.  ++++|.++|.+.+||+.++..          ......|..+|.++.+.+.-..=++++
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg  224 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG  224 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence             012234566666433 333  567888999999999998733          333457899999999988666667888


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV  434 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~  434 (458)
                      .+..+..|++.........+....     .....+..+.+-||++.+|+++.|++|++|..++..++..+.-|.+.|+++
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~-----lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v  299 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEIT-----LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV  299 (323)
T ss_pred             ccccceeeeeccccCcccccceEE-----ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence            888999999875422221111111     123457889999999999999999999999999999888888999999999


Q ss_pred             EECCCCCeEEEecCCCcEEEEeC
Q 012699          435 DWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       435 ~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +|+|+.+++|+++.|+.|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999997

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=2.6e-23  Score=168.57  Aligned_cols=298  Identities=15%  Similarity=0.215  Sum_probs=219.6

Q ss_pred             eeccCCCCeEEEEeCC-----CCCEEEEEeCCCcEEEEecCCCCCC---CccccccCCCceEEEEEecC---CCeEEEEE
Q 012699          142 TFLGHTSPISCCRFSS-----SGNNIASASVDGTVRIWTYDSSTPA---SRNATIYCGTEIMSLEWECK---SDRLLLIG  210 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~~~  210 (458)
                      ....|..+|..++|++     +.+.+++++. ..+.+|.......+   +......+......++|.-.   ...+++++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3457999999999985     2345666664 57888887654322   22222335567788888632   34588999


Q ss_pred             cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-
Q 012699          211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-  288 (458)
Q Consensus       211 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-  288 (458)
                      +.-|.|++.|+.+++....+..+.  ..|..+.+.|+.. ++++++.|.             .|++|++++..++..+- 
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG--~sINeik~~p~~~qlvls~SkD~-------------svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHG--GSINEIKFHPDRPQLVLSASKDH-------------SVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             cceeEEEEEecchhhhccceeccC--ccchhhhcCCCCCcEEEEecCCc-------------eEEEEeccCCeEEEEecc
Confidence            999999999999999998888887  6899999999875 667777775             99999999999998884 


Q ss_pred             cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce------e----------------e------eeeCCCCCeEE
Q 012699          289 LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ------I----------------T------GWPAHDSAISS  340 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~----------------~------~~~~~~~~v~~  340 (458)
                      ..+|...|.++.|+++|.+|++++.|.++++|++...+.      .                .      +-.-|...|.|
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence            467899999999999999999999999999999973211      0                0      11246667777


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec----CC-cccCCCCCCC--ceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          341 ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN----CS-RFCDPESSKS--CRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       341 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~-~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      +.|-  |+++++-|-++.|..|.....++......    +. .+........  +-...+|.|-++.||.|...|.+++|
T Consensus       257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW  334 (385)
T ss_pred             HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence            7775  57899999999999998843322211000    00 0001111122  23446677889999999999999999


Q ss_pred             EccCCCccc-ccCC---CCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          414 QVRGHASGM-RTLP---HGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       414 ~~~~~~~~~-~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      |++...+.. ....   ....|...+|+.|+.+|+...+|++|.-||-
T Consensus       335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            999876642 2222   3468999999999999999999999999973

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.1e-21  Score=176.33  Aligned_cols=422  Identities=12%  Similarity=0.126  Sum_probs=266.4

Q ss_pred             HHHhhccccCCCcceeeeeeccCCC---ceeeeeecCcceEEeccccccccccce------eeeeccC---CceeeeeCC
Q 012699           13 KEAQLSRLKNNSETIKYANIGQTKN---STLASGVNEESLLLSTNSSEACATTAT------HMGSAEM---GQTWASSRP   80 (458)
Q Consensus        13 ~~~~~~~l~~h~~~i~~~~~~s~~~---~~l~s~~~d~~~~iw~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~   80 (458)
                      .+..+..|.+|..+++.+.+ .+..   .++.+++.||.|++|+...+.+...+.      .....+.   ....+....
T Consensus        46 Tg~~i~~l~~~~a~l~s~~~-~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~  124 (792)
T KOG1963|consen   46 TGECITSLEDHTAPLTSVIV-LPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV  124 (792)
T ss_pred             hHhhhhhcccccCccceeee-cCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence            34567799999999999998 4443   477899999999999999887663222      1111111   000111111


Q ss_pred             ccceeEeeccCC--CcccccccccccCCcccceee---eccCCCCcCCCcceeccCCCeeeeeee---e------eeccC
Q 012699           81 ALSRFATNMSGN--DSISPSKLEFEDVGAGDIIQM---FNDGLYTENGRDAQGEEDFPEVKVDFL---E------TFLGH  146 (458)
Q Consensus        81 ~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~---~------~~~~h  146 (458)
                      .+-..+.+.+.+  +..+-..+.............   ...+.+++.|................-   +      .-..|
T Consensus       125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H  204 (792)
T KOG1963|consen  125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH  204 (792)
T ss_pred             ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence            222222222211  111111111111111111111   234445555554443333222221000   1      11247


Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      +-.++|.+++|+++++|+|..||.|.+|.--.  ..........-|..+|.+++|+ .++.+|++|+..|.+.+|.++++
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-cCCceEeecccceEEEEEeecCC
Confidence            77799999999999999999999999996433  2222223344577899999999 88999999999999999999998


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---C------CCCCc
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL---G------EDPPA  295 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~---~------~~~~~  295 (458)
                      + .+-+..-.  ++|..+.++|++...+....|.             .|.+....+......+..   .      ...+-
T Consensus       284 ~-kqfLPRLg--s~I~~i~vS~ds~~~sl~~~DN-------------qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  284 K-KQFLPRLG--SPILHIVVSPDSDLYSLVLEDN-------------QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             C-cccccccC--CeeEEEEEcCCCCeEEEEecCc-------------eEEEEeccchhhhhhccCccCCCcccccccccc
Confidence            8 33333333  7899999999999988888874             888887755443332211   1      12344


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-----CC------CCCeEEEEEcCCCCEEEEecC--------C
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-----AH------DSAISSILFGPDETSIFSLGS--------D  356 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~------~~~v~~~~~~~~~~~l~~~~~--------d  356 (458)
                      .+.++++|.-+.++..+..|.|.+||+.+.+.+..+.     .+      .-.+++++.+..|.+++|.-.        |
T Consensus       348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence            6778999977778888899999999998876665543     11      225777888888999988632        3


Q ss_pred             C--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc-cCC-CEEEEEeCCccEEEEEccCCCcccccC-------
Q 012699          357 G--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD-VNG-RRLLVTSGSVRAPIYQVRGHASGMRTL-------  425 (458)
Q Consensus       357 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~-------  425 (458)
                      |  .+++|-.....+-.....  ..  ..+|.......++. |.. ...++++.||.+++|-+.+.+......       
T Consensus       428 ~e~~LKFW~~n~~~kt~~L~T--~I--~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~  503 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFILNT--KI--NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA  503 (792)
T ss_pred             ceEEEEEEEEcCCcceeEEEE--EE--ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee
Confidence            3  478888765443322211  11  12344444444443 333 378899999999999995443332211       


Q ss_pred             ---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          426 ---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       426 ---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                         -|..++++++|+.||. +++++.|++|.+||.
T Consensus       504 i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  504 IGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY  537 (792)
T ss_pred             eeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence               2788999999999996 555667889999996

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=2.2e-22  Score=167.71  Aligned_cols=306  Identities=18%  Similarity=0.281  Sum_probs=205.9

Q ss_pred             eeeeCCccce-eEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE
Q 012699           75 WASSRPALSR-FATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC  153 (458)
Q Consensus        75 ~~~~~~~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  153 (458)
                      ..+.+.+... .+++|+.|..+++|.+....                |.+.         ..+++.+..|..|+..|+++
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~----------------~~~~---------~~~V~y~s~Ls~H~~aVN~v   71 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSE----------------PGGG---------DMKVEYLSSLSRHTRAVNVV   71 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecC----------------CCCC---------ceeEEEeecccCCcceeEEE
Confidence            3344444333 99999999999999998755                2221         14455778899999999999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEecCCC------C--------CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          154 RFSSSGNNIASASVDGTVRIWTYDSS------T--------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       154 ~~~~~~~~l~s~~~dg~v~iwd~~~~------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      .|+|+|+.||+|+.+|.|.+|....-      .        .........|...|..++|+ +++.++++++.|..+++|
T Consensus        72 Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~  150 (434)
T KOG1009|consen   72 RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLW  150 (434)
T ss_pred             EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEE
Confidence            99999999999999999999976521      1        11112233466889999999 889999999999999999


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------------------
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------------------  280 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------------------  280 (458)
                      |+..|+....+..+.  ..+..++|.|-++++++-+.++.             .+.+.+..                   
T Consensus       151 Dv~~G~l~~~~~dh~--~yvqgvawDpl~qyv~s~s~dr~-------------~~~~~~~~~~~~~~~~~~~m~~~~~~~  215 (434)
T KOG1009|consen  151 DVHAGQLLAILDDHE--HYVQGVAWDPLNQYVASKSSDRH-------------PEGFSAKLKQVIKRHGLDIMPAKAFNE  215 (434)
T ss_pred             EeccceeEeeccccc--cccceeecchhhhhhhhhccCcc-------------cceeeeeeeeeeeeeeeeEeeecccCC
Confidence            999999999888777  46999999999999999888862             22222211                   


Q ss_pred             --CceeEEeecCCCCCcEEEEEEccCCCEEEEEec----CC-----eEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCC
Q 012699          281 --WKAMTVLPLGEDPPAITSLCFNHNGKILAASAV----DG-----MIHMFDMSA-GLQITGWPAHDSAISSILFGPDET  348 (458)
Q Consensus       281 --~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg-----~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~  348 (458)
                        ++..+.+.-+.-+.-...++|+|+|.++++...    .+     ..++|+-.. .++...++....++..+.|+|-  
T Consensus       216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV--  293 (434)
T KOG1009|consen  216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV--  293 (434)
T ss_pred             CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee--
Confidence              111122211111234567889999999887542    12     234444322 2344455555555555555542  


Q ss_pred             EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CC
Q 012699          349 SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PH  427 (458)
Q Consensus       349 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h  427 (458)
                                  .|.++.....       .          .  +---|-+-.+|+++. +.+++||.++..+..... -|
T Consensus       294 ------------y~elrp~~~~-------~----------~--~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nih  341 (434)
T KOG1009|consen  294 ------------YYELRPLSSE-------K----------F--LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIH  341 (434)
T ss_pred             ------------EEEecccccc-------c----------c--ccccccceEEEEeec-ceEEEeccccccceEEEeeee
Confidence                        2222211000       0          0  111123334455544 569999998876665554 48


Q ss_pred             CCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          428 GAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       428 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      -..+++++|++||..|+..|.||...+-
T Consensus       342 y~~iTDiaws~dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  342 YSAITDIAWSDDGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eeeecceeecCCCcEEEEeccCCceEEE
Confidence            8999999999999999999999976543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.91  E-value=1.7e-21  Score=174.36  Aligned_cols=281  Identities=10%  Similarity=0.179  Sum_probs=181.2

Q ss_pred             EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE-cCCCcEEEEEcCC-CceeeeccCCCCCCcee
Q 012699          163 ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG-TADGGIKAWNVDA-KRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       163 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~-~~~~~~~~~~~~~~~v~  240 (458)
                      ++...++.|.+|++.+..................++++ +++++|+++ ..++.|.+|+++. ++.. ............
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~~~~p~   83 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPLPGSPT   83 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceE-EeeeecCCCCce
Confidence            44467899999999643222222333344567788999 566666555 4588999999973 3321 111111113467


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEE
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIH  318 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  318 (458)
                      .++++|+++.++++....            +.|.+|++.+.. ................++++|+++++++++ .++.|.
T Consensus        84 ~i~~~~~g~~l~v~~~~~------------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~  151 (330)
T PRK11028         84 HISTDHQGRFLFSASYNA------------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIR  151 (330)
T ss_pred             EEEECCCCCEEEEEEcCC------------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence            899999999998887543            699999997422 211111111223467788999999886655 468999


Q ss_pred             EEeCCCCceee-------eeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCC-CeeEEeecCCcccCCCCCCCce
Q 012699          319 MFDMSAGLQIT-------GWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCR  389 (458)
Q Consensus       319 v~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v  389 (458)
                      +||+.+...+.       ... .......++|+|++++++++.. ++.|.+|++... +.....................
T Consensus       152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            99997632221       111 2344678999999999988776 899999999742 1211111111111111122344


Q ss_pred             eEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCC---CCcEEEEEECCCCCeEEEecC-CCcEEEEeCC
Q 012699          390 HEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPH---GAAITTVDWHPTLPMFLTGSA-DHSVQVMSLS  458 (458)
Q Consensus       390 ~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~l~  458 (458)
                      ..+.++|+|++|+++.. ++.|.+|+++.......+.++   ......++|+|+|++|+++.. +++|.+|+++
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            56899999999999865 689999999655433333332   235668999999998887665 8999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=170.78  Aligned_cols=248  Identities=17%  Similarity=0.293  Sum_probs=185.3

Q ss_pred             EEEEeCC-------CCCEEEEEeCCCcEEEEecCCCCCCCcc-------------------ccccCCCceEEEEEecCCC
Q 012699          151 SCCRFSS-------SGNNIASASVDGTVRIWTYDSSTPASRN-------------------ATIYCGTEIMSLEWECKSD  204 (458)
Q Consensus       151 ~~~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~  204 (458)
                      .|+.|..       .|+++|.|..|..|.|||+.-...+...                   ....|...|..++|+....
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            5666642       3689999999999999998533221111                   1123555678888986778


Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCC-c
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-K  282 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~  282 (458)
                      +.|++|+.|.+|.+||+.++++..++..+.  ..|.++.|+|... .+++|+.+             +++.+.|.+.. .
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~~p~~LLsGs~D-------------~~V~l~D~R~~~~  321 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPYEPSVLLSGSYD-------------GTVALKDCRDPSN  321 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCCCceEEEecccc-------------ceEEeeeccCccc
Confidence            899999999999999999999999988655  7899999999876 66677777             59999999942 2


Q ss_pred             eeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeE
Q 012699          283 AMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKI  359 (458)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  359 (458)
                      .-..+++.   +.|..++|.|. ...+++++.||.|+-+|+|+ ++++.++++|.++|.++++++. ..++++++.|+.+
T Consensus       322 s~~~wk~~---g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  322 SGKEWKFD---GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV  398 (463)
T ss_pred             cCceEEec---cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence            22233322   45899999995 45778888999999999998 5999999999999999999884 4578899999999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCCCcccc
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~~~~~~  423 (458)
                      ++|++...........       ...-+...++++.|+-. .|++|+..+.+++||+.+.....+
T Consensus       399 klw~~~~~~~~~v~~~-------~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  399 KLWKFDVDSPKSVKEH-------SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EEEeecCCCCcccccc-------cccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            9999986433211111       11112256777888765 456677778899999987755443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.7e-22  Score=172.65  Aligned_cols=266  Identities=16%  Similarity=0.266  Sum_probs=205.4

Q ss_pred             eeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccC
Q 012699           27 IKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDV  105 (458)
Q Consensus        27 i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~  105 (458)
                      +..+.+ +..+ -.+++-+.|..+++|.-...  .+.++...-........+.......|+++|+..+.++|||++... 
T Consensus        37 ~~s~~w-~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-  112 (673)
T KOG4378|consen   37 DFSFNW-QRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL-  112 (673)
T ss_pred             ceeeec-cccceEEEeecCCceeEEEecccCC--CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH-
Confidence            778888 4444 34455667888888865544  223333222222222334444566899999999999999997522 


Q ss_pred             CcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc
Q 012699          106 GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN  185 (458)
Q Consensus       106 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  185 (458)
                                                       +.+.+++|+..|+++.++....+||+++..|.|.|..+.++.... .
T Consensus       113 ---------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt-~  158 (673)
T KOG4378|consen  113 ---------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT-T  158 (673)
T ss_pred             ---------------------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc-c
Confidence                                             556788999999999999999999999999999999998876542 1


Q ss_pred             ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcc
Q 012699          186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSN  264 (458)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~  264 (458)
                      .....+..|.-+.|+|....+|.+++.+|.|.+||+....+...+.. .|..+...++|+|... ++++.+.|.      
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dk------  231 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDK------  231 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccc------
Confidence            22233456778999988888899999999999999998777655433 2346889999999776 566777774      


Q ss_pred             eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEE
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILF  343 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~  343 (458)
                             .|.+||.+..+....+...   .+...++|+++|.+|++|...|.|..||++. ..++..+.+|...|++++|
T Consensus       232 -------ki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  232 -------KINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             -------eEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence                   9999999988887777543   3589999999999999999999999999986 5778999999999999999


Q ss_pred             cCCC
Q 012699          344 GPDE  347 (458)
Q Consensus       344 ~~~~  347 (458)
                      -|..
T Consensus       302 q~s~  305 (673)
T KOG4378|consen  302 QPSP  305 (673)
T ss_pred             eecc
Confidence            8764

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.5e-22  Score=162.95  Aligned_cols=286  Identities=14%  Similarity=0.202  Sum_probs=198.7

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-C
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-P  237 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~  237 (458)
                      ..+|++...|+|++||..+++...  ....++..+..+.|... ....+.+++.||+|++||+++......+....+. .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~--~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE--EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh--eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            468888889999999999876654  23345566778888732 5678999999999999999988776665554443 3


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEEEEcc-CCCEEEEEecCC
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNH-NGKILAASAVDG  315 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg  315 (458)
                      +-.+++..-.+..++++..-.         ..+..+.+||.+..+. +..+ .+.|...|+++.|+| +.++|++|+.||
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~---------~s~A~v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDG  188 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELT---------RSDASVVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDG  188 (376)
T ss_pred             cceEeeccCcCCeEEeccccc---------cCceEEEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEEeecccc
Confidence            455666665777777775432         1124899999998777 4444 467889999999999 467999999999


Q ss_pred             eEEEEeCCCCc---eeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCccc---CCCCCCCc
Q 012699          316 MIHMFDMSAGL---QITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC---DPESSKSC  388 (458)
Q Consensus       316 ~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~  388 (458)
                      .|.+||+....   .+...-.|...|.++.|..++ +.|.+-+...+..+|+++.+....+........   ..+.....
T Consensus       189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY  268 (376)
T KOG1188|consen  189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY  268 (376)
T ss_pred             eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence            99999987542   222333567889999998876 468888999999999999876554332210000   00011112


Q ss_pred             eeEEEEccCCCEEEEEeC-CccEEEEEccC------CCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          389 RHEMALDVNGRRLLVTSG-SVRAPIYQVRG------HASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +...-...++..+++++. .+...++-+..      ...+..+. +|..-|+++.|...+.++.|||+||.+.+|..
T Consensus       269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            222222224555565555 45555555432      22233333 47888999999988999999999999999973

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.5e-22  Score=170.60  Aligned_cols=259  Identities=15%  Similarity=0.220  Sum_probs=185.9

Q ss_pred             CCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC
Q 012699           79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS  158 (458)
Q Consensus        79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  158 (458)
                      ..+.+.|+|.|+.+..|.|||+.....-........             -.+.......+.-..-.+|+..|..++|+..
T Consensus       188 ~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs-------------~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  188 SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGS-------------KASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             CCCCcceEEEeccCceeEEeccccccccccceeech-------------hhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            345788999999999999999987652211111110             0000000000111223579999999999875


Q ss_pred             -CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-eeeccCCCCC
Q 012699          159 -GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-VCDLNTTDAF  236 (458)
Q Consensus       159 -~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~  236 (458)
                       .+.||+||.|.+|++||+.++++..  ....|+.+|.++.|+|.....|++|+.|+++.+.|.+.... -..++..   
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~--s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---  329 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKS--SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---  329 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcce--ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---
Confidence             4578999999999999999999864  33457889999999999999999999999999999984222 1122222   


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEEEEEEccC-CCEEEEEecC
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAITSLCFNHN-GKILAASAVD  314 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  314 (458)
                      +.|..++|.|.....+.++.+.            |.++-+|++.. +++..+  ..|..+|.++++++. ..++++++.|
T Consensus       330 g~VEkv~w~~~se~~f~~~tdd------------G~v~~~D~R~~~~~vwt~--~AHd~~ISgl~~n~~~p~~l~t~s~d  395 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDD------------GTVYYFDIRNPGKPVWTL--KAHDDEISGLSVNIQTPGLLSTASTD  395 (463)
T ss_pred             cceEEEEecCCCceeEEEecCC------------ceEEeeecCCCCCceeEE--EeccCCcceEEecCCCCcceeecccc
Confidence            5789999999888666555444            79999999986 555555  578889999999985 4578899999


Q ss_pred             CeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCe
Q 012699          315 GMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       315 g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      +.|++|++....+  +..-...-+...|.++.|+-. .++.|+..+.+++||+.+...
T Consensus       396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            9999999875443  221111123467778888654 577788888899999987543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.90  E-value=4.5e-20  Score=152.42  Aligned_cols=239  Identities=17%  Similarity=0.275  Sum_probs=184.6

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC--CcEEEEEcCCC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD--GGIKAWNVDAK  224 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~  224 (458)
                      ...+..+.|+.+...|..|+.|| .++|+.+.....  ......+..|.-+-|+   ..+++..+.+  ..++++++..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~--~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC--FSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh--hcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccC
Confidence            34577778999999999999988 577776554331  1122233456666776   4455555444  35999999988


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-CCCCcEEEEEEcc
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNH  303 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~  303 (458)
                      ..++.+...   .+|.++.++.+  .++..-.+              .|.|||+++.+.+.++... .++..+.++++++
T Consensus        79 ~~ICe~~fp---t~IL~VrmNr~--RLvV~Lee--------------~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~  139 (391)
T KOG2110|consen   79 TTICEIFFP---TSILAVRMNRK--RLVVCLEE--------------SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN  139 (391)
T ss_pred             ceEEEEecC---CceEEEEEccc--eEEEEEcc--------------cEEEEecccceeehhhhccCCCccceEeeccCC
Confidence            888877665   46777777654  45555443              8999999999999888654 5666677777777


Q ss_pred             CCCEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-EEEEeccCCCeeEEeecCCccc
Q 012699          304 NGKILAASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK-IIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       304 ~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      .+.+++.-+  ..|.|.+||+.+-+++..+.+|.+++.+++|+++|.+|||+|+.|+ ||++.+.+++.....++..   
T Consensus       140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---  216 (391)
T KOG2110|consen  140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---  216 (391)
T ss_pred             CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---
Confidence            788998743  3689999999999999999999999999999999999999999998 7999999887776554322   


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                          ....|.+++|+|++++|++.+..++|++|.++.
T Consensus       217 ----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  217 ----YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             ----eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence                245689999999999999999999999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.4e-23  Score=192.80  Aligned_cols=285  Identities=19%  Similarity=0.271  Sum_probs=212.1

Q ss_pred             EEEeCCCCC-EEEEE----------eCCCcEEEEecCCCCCC---CccccccCCCceEEEEEecCCCe---EEEEEcCCC
Q 012699          152 CCRFSSSGN-NIASA----------SVDGTVRIWTYDSSTPA---SRNATIYCGTEIMSLEWECKSDR---LLLIGTADG  214 (458)
Q Consensus       152 ~~~~~~~~~-~l~s~----------~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg  214 (458)
                      .++|+|.+. ++++|          +.+.++-||.+.-....   ............+.++|.+....   +|+.|..||
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            467788775 44443          23455666655432221   12233444567899999854433   589999999


Q ss_pred             cEEEEEcCC---Cce-eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699          215 GIKAWNVDA---KRV-VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL  289 (458)
Q Consensus       215 ~i~~wd~~~---~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~  289 (458)
                      .|.+||...   +.. ........|.+.|..+.|++... ++++|+.+             |.|.|||+...+.......
T Consensus        91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~-------------geI~iWDlnn~~tP~~~~~  157 (1049)
T KOG0307|consen   91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD-------------GEILIWDLNKPETPFTPGS  157 (1049)
T ss_pred             ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC-------------CcEEEeccCCcCCCCCCCC
Confidence            999999865   221 11122234458999999999887 77777777             6999999998555444422


Q ss_pred             CCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCC--CeEEEEEcCCC-CEEEEecCCC---eEEEE
Q 012699          290 GEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDS--AISSILFGPDE-TSIFSLGSDG---KIIEW  362 (458)
Q Consensus       290 ~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~dg---~i~iw  362 (458)
                      ......|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.+  .+..++|+|+. ..|++++.|.   .|.+|
T Consensus       158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW  237 (1049)
T KOG0307|consen  158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW  237 (1049)
T ss_pred             CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee
Confidence            234568999999985 45788899999999999999888887776655  46789999976 4566666644   49999


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      |++....+.        .....|...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+......+..+.|+|...
T Consensus       238 DlR~assP~--------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  238 DLRFASSPL--------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             cccccCCch--------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence            998654332        2235788999999999966 8899999999999999999988777777778899999999988


Q ss_pred             -eEEEecCCCcEEEEeC
Q 012699          442 -MFLTGSADHSVQVMSL  457 (458)
Q Consensus       442 -~l~s~~~dg~v~iw~l  457 (458)
                       .++.++.||.|.|+.+
T Consensus       310 ~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  310 SVMAAASFDGKISIYSL  326 (1049)
T ss_pred             chhhhheeccceeeeee
Confidence             8888999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.1e-22  Score=174.78  Aligned_cols=216  Identities=19%  Similarity=0.346  Sum_probs=163.4

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--------CCccccccCCCceEEEEEecCCCeEEEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------ASRNATIYCGTEIMSLEWECKSDRLLLI  209 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~  209 (458)
                      +.+.+|++|.++|.|+++.++++.+++|+-||+|+.|++....-        ........|...++.++++ .....|++
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Lls  413 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLS  413 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceee
Confidence            37789999999999999999999999999999999997652211        1122345677889999999 66777999


Q ss_pred             EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699          210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL  289 (458)
Q Consensus       210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~  289 (458)
                      ++.||+++.|+...... +++...........+.+.........++...            +.-.++++........+..
T Consensus       414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~------------~~~~~~~~ev~s~~~~~~s  480 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF------------GYTSIDDMEVVSDLLIFES  480 (577)
T ss_pred             ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccc------------ccccchhhhhhhheeeccc
Confidence            99999999999877666 4555544444555565554443332222211            2333344444444433332


Q ss_pred             CCC-----CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          290 GED-----PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       290 ~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      ...     ...++.+.++|...+.+++..|+.|+++|..+++++....+|...++++++.|+|.+|++++.|+.+++|.+
T Consensus       481 ~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  481 SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            211     235788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 012699          365 QNQ  367 (458)
Q Consensus       365 ~~~  367 (458)
                      ...
T Consensus       561 d~k  563 (577)
T KOG0642|consen  561 DVK  563 (577)
T ss_pred             cch
Confidence            754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=2.8e-21  Score=154.14  Aligned_cols=267  Identities=16%  Similarity=0.240  Sum_probs=196.4

Q ss_pred             CCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCC-------CcEEEEEcCCCc---------eeee
Q 012699          167 VDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTAD-------GGIKAWNVDAKR---------VVCD  229 (458)
Q Consensus       167 ~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~---------~~~~  229 (458)
                      .|+.|.+.+++...... ......+.++|+.++-+|.+.++|+++..+       -.+.+|.+....         ++..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            46777777776544322 223444568999999998888888887653       246799886432         2222


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecC---CCCCcEEEEEEcc--
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLG---EDPPAITSLCFNH--  303 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~---~~~~~i~~~~~~~--  303 (458)
                      +... +.+.+.++.|.|++..+++....              .|.+|++..... ...+...   ++....++-+|+|  
T Consensus       118 Ldte-avg~i~cvew~Pns~klasm~dn--------------~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  118 LDTE-AVGKINCVEWEPNSDKLASMDDN--------------NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             CCHH-HhCceeeEEEcCCCCeeEEeccC--------------ceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence            2222 22578999999999999988754              999999988766 3333221   2345678889999  


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          304 NGKILAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      +++.+++. .|+++..||+++.+....+ .+|...|..+.|+|+.. +|++|++||.|++||.++.+.+        +..
T Consensus       183 dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p--------v~e  253 (370)
T KOG1007|consen  183 DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP--------VQE  253 (370)
T ss_pred             ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc--------ccc
Confidence            67777764 5899999999987766655 47888999999999765 6889999999999999976543        344


Q ss_pred             CCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEccCCC-----------------------------cccccCCCCCcE
Q 012699          382 PESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHA-----------------------------SGMRTLPHGAAI  431 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~-----------------------------~~~~~~~h~~~v  431 (458)
                      ..+|..++.++.|+|. .+++++++.|..|.+|....-.                             .+..+..|.+.|
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV  333 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence            5679999999999995 5788899999999998653211                             111233699999


Q ss_pred             EEEEECCCCC-eEEEecCCCcEEEEeC
Q 012699          432 TTVDWHPTLP-MFLTGSADHSVQVMSL  457 (458)
Q Consensus       432 ~~~~~~~~~~-~l~s~~~dg~v~iw~l  457 (458)
                      .+++|+.-.+ .+|+-+.||.+.|=++
T Consensus       334 Y~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             EEEeeccCCCeeEEEeccCceEEeecC
Confidence            9999998888 6788999999987443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=7.5e-22  Score=167.04  Aligned_cols=252  Identities=17%  Similarity=0.258  Sum_probs=193.8

Q ss_pred             cccCCCceEEEEEecCCC-eEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCC
Q 012699          187 TIYCGTEIMSLEWECKSD-RLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGS  262 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~  262 (458)
                      ...+..+|.+++|+|... .++++|..-|.|-+||+.+.+.  -..+....+..+|.++.|+|... .+++.+.|     
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD-----  256 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD-----  256 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC-----
Confidence            344678899999998766 7888999999999999963321  12223334447899999999765 66677777     


Q ss_pred             cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeeeeCCCCCeEEE
Q 012699          263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAHDSAISSI  341 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~  341 (458)
                              |+|++-|++.......+........+..+.|+.+...++.+..=|...+||++++.. ...+.-|...|+.+
T Consensus       257 --------GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv  328 (498)
T KOG4328|consen  257 --------GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV  328 (498)
T ss_pred             --------ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence                    699999999877666665544556688888988888788887778999999998544 66777889999999


Q ss_pred             EEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc---C
Q 012699          342 LFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR---G  417 (458)
Q Consensus       342 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~---~  417 (458)
                      +++|. ..+|+|+|.|++.+|||++......     ..+.....|...|.+..|||++-.|++.+.|..|+|||..   .
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence            99994 4578999999999999998653211     1244556788899999999998889999999999999985   3


Q ss_pred             CCcccccCCCCC------cEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          418 HASGMRTLPHGA------AITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       418 ~~~~~~~~~h~~------~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ...+.....|..      .....+|.|+..++++|-.-..|-|+|
T Consensus       404 ~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  404 KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            333333333432      345568999999999998888888876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=2.1e-21  Score=171.98  Aligned_cols=271  Identities=14%  Similarity=0.204  Sum_probs=210.7

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      .|..++|-|||..|+.+. +..+.+||...+....  ....|...|++++|+ .++..+++|+.|..+.+|+..-...+.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq--tLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ--PLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCccccc--ccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceee
Confidence            789999999999887765 4579999999887754  456788899999999 899999999999999999865433322


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                          ..|...|.++.|+|-...+++++-+              ..-+|........+ .   .....+.+.+|..||++|
T Consensus        90 ----YSH~D~IQCMsFNP~~h~LasCsLs--------------dFglWS~~qK~V~K-~---kss~R~~~CsWtnDGqyl  147 (1081)
T KOG1538|consen   90 ----YSHNDAIQCMSFNPITHQLASCSLS--------------DFGLWSPEQKSVSK-H---KSSSRIICCSWTNDGQYL  147 (1081)
T ss_pred             ----eccCCeeeEeecCchHHHhhhcchh--------------hccccChhhhhHHh-h---hhheeEEEeeecCCCcEE
Confidence                1233689999999999999999876              77788876543332 1   233568999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeeee---CCCCCeEEEEEcCCC-----CEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          309 AASAVDGMIHMFDMSAGLQITGWP---AHDSAISSILFGPDE-----TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       309 ~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      +.|-.+|+|.+-+.. +++...+.   +.+.+|++++|+|..     ..+++.....++.+|.+...  .        ..
T Consensus       148 alG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~--------Ig  216 (1081)
T KOG1538|consen  148 ALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--Q--------IG  216 (1081)
T ss_pred             EEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--e--------ec
Confidence            999999999998743 44433333   467899999999943     46777777888888887642  1        11


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ......-...++.+.|+|.+++.|+.++.+++|.-++- .+...-.....|+.++..|+++.++.|+.||+|.-|++
T Consensus       217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            12234445788999999999999999999999987653 22333345678999999999999999999999988775

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=1.7e-21  Score=160.89  Aligned_cols=249  Identities=17%  Similarity=0.268  Sum_probs=181.2

Q ss_pred             eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699           77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS  156 (458)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  156 (458)
                      +.-.+++.+.++.+..|.+.+|++.....            +++..+-..      .....+++.++.+|.+.=+.++||
T Consensus       159 ~~~~~~~~~~aswse~G~V~Vw~l~~~l~------------~l~~~~~~~------~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  159 VSRLGNEVLCASWSENGRVQVWDLAPHLN------------ALSEPGLEV------KDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ecccCCcceeeeecccCcEEEEEchhhhh------------hhcCccccc------cccccCceEEecccCccceeeecc
Confidence            33334778899999999999999864221            011111100      012234788899999999999999


Q ss_pred             CC-CCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC
Q 012699          157 SS-GNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD  234 (458)
Q Consensus       157 ~~-~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  234 (458)
                      |- ...|+||.--+.|++|...++.... ......|...|..++|+|.....|++|+.||+|+|||++.+.....+....
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA  300 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA  300 (440)
T ss_pred             cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence            93 2358888888899999988765432 222344778999999999899999999999999999999984433333344


Q ss_pred             CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC---ceeEEeecCCCCCcEEEEEEccC-CCEEEE
Q 012699          235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW---KAMTVLPLGEDPPAITSLCFNHN-GKILAA  310 (458)
Q Consensus       235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~  310 (458)
                      +.+.|.-+.|+....+|++|+.+             |+++|||++..   +++..++  -|..+|+++.|+|. ...|++
T Consensus       301 h~sDVNVISWnr~~~lLasG~Dd-------------Gt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  301 HNSDVNVISWNRREPLLASGGDD-------------GTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPHEDSVIAA  365 (440)
T ss_pred             cCCceeeEEccCCcceeeecCCC-------------ceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccccCceEEe
Confidence            55789999999999988888887             69999999863   4555554  57788999999995 567888


Q ss_pred             EecCCeEEEEeCCCCce----------------eeeeeCC--CCCeEEEEEcCCC-CEEEEecCCCe
Q 012699          311 SAVDGMIHMFDMSAGLQ----------------ITGWPAH--DSAISSILFGPDE-TSIFSLGSDGK  358 (458)
Q Consensus       311 ~~~dg~i~v~d~~~~~~----------------~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~dg~  358 (458)
                      ++.|..|.+||+.--.-                .+-+-.|  ...+..+.|+++- .++++.+.||.
T Consensus       366 sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  366 SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence            89999999999852110                0111123  4467889999843 37888888874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=172.38  Aligned_cols=270  Identities=17%  Similarity=0.221  Sum_probs=207.6

Q ss_pred             eeccCCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc
Q 012699          113 MFNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT  187 (458)
Q Consensus       113 ~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  187 (458)
                      ..++.+|.|||..+..+..+..+.+     ..+.++++|.+.|+|++|+.||+++|+|+.|..|.+|+-.-...    ..
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~----Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI----LK   89 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce----ee
Confidence            4567788999998887776655544     57889999999999999999999999999999999998543322    34


Q ss_pred             ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      ..|+..|.|+.|+ |-.+.|++++-+ ..-+|..+......    +....++.+.+|..||.+++.|-.+          
T Consensus        90 YSH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsWtnDGqylalG~~n----------  153 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSWTNDGQYLALGMFN----------  153 (1081)
T ss_pred             eccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhHHh----hhhheeEEEeeecCCCcEEEEeccC----------
Confidence            5688899999999 556667777654 57788776544322    2222578999999999999999988          


Q ss_pred             ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC-----CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699          268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG-----KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL  342 (458)
Q Consensus       268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~  342 (458)
                         |+|.+-+.........-...+...+|.+++|+|..     ..+++.....++..|.+. |+.+..-+.-.-...|+.
T Consensus       154 ---GTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis  229 (1081)
T KOG1538|consen  154 ---GTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS  229 (1081)
T ss_pred             ---ceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe
Confidence               69998865544444443445567789999999953     477888888888888876 555543333445567899


Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      +.|+|.++..|+.|+.+.+|--..-          ++........+|+.++..|+++++++|+.||+|.-|++-
T Consensus       230 Yf~NGEy~LiGGsdk~L~~fTR~Gv----------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  230 YFTNGEYILLGGSDKQLSLFTRDGV----------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             eccCCcEEEEccCCCceEEEeecCe----------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            9999999999999999999965421          222223467889999999999999999999999988764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=1.2e-20  Score=152.94  Aligned_cols=281  Identities=13%  Similarity=0.154  Sum_probs=199.0

Q ss_pred             eeeeeeccCCCceeeeeecCcceEEecccccccccc---------ceeeeeccCCceee-------eeCCccceeEeecc
Q 012699           27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATT---------ATHMGSAEMGQTWA-------SSRPALSRFATNMS   90 (458)
Q Consensus        27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~   90 (458)
                      ...+.+ +|||..+++-+.|+.+++|++-..-....         ............+.       -...++..++++.+
T Consensus        52 ~kgckW-SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKW-SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hcccee-CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            456788 99999999999999999998754432211         01111111111111       11234667788888


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCC---CeEEEEeCCCCCEEEEEeC
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTS---PISCCRFSSSGNNIASASV  167 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~  167 (458)
                      .+.-|.+|+.-...                    .-++...            -.|..   ...+++|+|||.+|+.| .
T Consensus       131 r~~PIh~wdaftG~--------------------lraSy~~------------ydh~de~taAhsL~Fs~DGeqlfaG-y  177 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGK--------------------LRASYRA------------YDHQDEYTAAHSLQFSPDGEQLFAG-Y  177 (406)
T ss_pred             ccCceeeeeccccc--------------------cccchhh------------hhhHHhhhhheeEEecCCCCeEeec-c
Confidence            88888888864422                    1111000            01222   24589999999999876 4


Q ss_pred             CCcEEEEec-CCCCCCCccccccC-----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699          168 DGTVRIWTY-DSSTPASRNATIYC-----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       168 dg~v~iwd~-~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  241 (458)
                      ...|+++|+ +.+..-....+..+     .+-+.+++|+|.+...++.++....+-+|.-..+.++..+..+.  +.|+.
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~--gGvTh  255 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG--GGVTH  255 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC--CCeee
Confidence            689999998 44433222222223     45688999999899999999999999999999888888777555  78999


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC---cEEEEEEccCCCEEEEEecCCeEE
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP---AITSLCFNHNGKILAASAVDGMIH  318 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~  318 (458)
                      +.|.++|+.++++....            ..|..||++..+.. ...+..|..   .-.-....|++++|++|+.||.|+
T Consensus       256 L~~~edGn~lfsGaRk~------------dkIl~WDiR~~~~p-v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~  322 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKD------------DKILCWDIRYSRDP-VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR  322 (406)
T ss_pred             EEeccCcCeecccccCC------------CeEEEEeehhccch-hhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence            99999999999998765            39999999864321 112223322   112345578899999999999999


Q ss_pred             EEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          319 MFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       319 v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      +||+.+ +..+..+..+...++.++++|--.++++++..
T Consensus       323 vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  323 VWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            999998 77788889999999999999998888887754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=7.8e-21  Score=167.38  Aligned_cols=250  Identities=19%  Similarity=0.295  Sum_probs=180.3

Q ss_pred             EEEEec--CCCeEEEEEcCCCcEEEEEcCCCcee---e-eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699          196 SLEWEC--KSDRLLLIGTADGGIKAWNVDAKRVV---C-DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG  269 (458)
Q Consensus       196 ~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (458)
                      +..|++  ....+|+.+.+||.|.++|.......   + ......|.+.|.++.|-|....|++++.|.           
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs-----------  122 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS-----------  122 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCc-----------
Confidence            344542  45678999999999999998764432   1 122234557899999999777888888885           


Q ss_pred             ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc----------------------
Q 012699          270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL----------------------  326 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~----------------------  326 (458)
                        ++++||+++.+....-..-+|...+.+++|.|. ...|++|+.||.|.|||++-..                      
T Consensus       123 --T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  123 --TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             --eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence              999999999888776445689999999999995 5678999999999999986321                      


Q ss_pred             -----eeeeeeCCCCCeEE---EEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecC--CcccCCCCCCCceeEEEEc
Q 012699          327 -----QITGWPAHDSAISS---ILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNC--SRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       327 -----~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s  395 (458)
                           .+....++...|.+   +.+..|...||+++. |+.|++||+++..........  ..+.........+.++..+
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence                 11222345555555   555678889999988 999999999976544322111  1111222234567788888


Q ss_pred             cCCCEEEEEeCCccEEEEEccCCCcc--cccCCCCC--cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          396 VNGRRLLVTSGSVRAPIYQVRGHASG--MRTLPHGA--AITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ..|.+|++.+.|+.|+.|++.+....  ..+.++..  .-..-..+||+.+|++|+.|...++|.++
T Consensus       281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence            89999999999999999999876432  22223321  11223568999999999999999999874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.88  E-value=3.7e-20  Score=174.73  Aligned_cols=309  Identities=15%  Similarity=0.195  Sum_probs=210.7

Q ss_pred             eeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEecCCCeEEE
Q 012699          135 VKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWECKSDRLLL  208 (458)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~  208 (458)
                      .+...+..+..|...|..++.+++. .+++|||.||+|++|+...-...     ........+..+.++.+. .+++.++
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFA 1114 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEE
Confidence            3345778889999999999988754 99999999999999998643221     111222356788888888 7788899


Q ss_pred             EEcCCCcEEEEEcCCCce-------eeeccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          209 IGTADGGIKAWNVDAKRV-------VCDLNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       209 ~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      .++.||.|++.+++....       ......... +.+.+ -++.....-           ..+++++..+.|..||++.
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S-----------~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQS-----------HVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeecccccccc-----------eeEEEEEeccceEEecchh
Confidence            999999999999876211       111111111 22222 222221111           1223333346999999999


Q ss_pred             CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCC---CCEEEEec--
Q 012699          281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPD---ETSIFSLG--  354 (458)
Q Consensus       281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~--  354 (458)
                      ......++.....+.|++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+++.+..+|-   ....++++  
T Consensus      1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred             hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence            8888877777777899999999999999999999999999999988888775 44568888887773   23444444  


Q ss_pred             CCCeEEEEeccCCCeeEEeecC---CcccC-------CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNC---SRFCD-------PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---  421 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---  421 (458)
                      ..+.|.+|++.++.........   ..+..       .....-.....++...+.++.+|+.|..|+.||.......   
T Consensus      1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~ 1342 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYA 1342 (1431)
T ss_pred             CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccccc
Confidence            4778999999987443322221   11110       0122223344555566788999999999999997522111   


Q ss_pred             ---------------------------------------------ccc--------CCCCCcEEEEEECCCCC-eEEEec
Q 012699          422 ---------------------------------------------MRT--------LPHGAAITTVDWHPTLP-MFLTGS  447 (458)
Q Consensus       422 ---------------------------------------------~~~--------~~h~~~v~~~~~~~~~~-~l~s~~  447 (458)
                                                                   ...        ..|.++|+++++....+ +|++++
T Consensus      1343 ~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s 1422 (1431)
T KOG1240|consen 1343 VPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS 1422 (1431)
T ss_pred             ccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec
Confidence                                                         000        03778899998876654 899999


Q ss_pred             CCCcEEEEe
Q 012699          448 ADHSVQVMS  456 (458)
Q Consensus       448 ~dg~v~iw~  456 (458)
                      .||.|+||.
T Consensus      1423 ~dG~IkiWk 1431 (1431)
T KOG1240|consen 1423 RDGVIKIWK 1431 (1431)
T ss_pred             CCCeeeecC
Confidence            999999994

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.5e-19  Score=161.78  Aligned_cols=415  Identities=14%  Similarity=0.132  Sum_probs=264.6

Q ss_pred             ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccc
Q 012699           20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSK   99 (458)
Q Consensus        20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~   99 (458)
                      |.|-...-..-.| |+|+++++... +..+.|+...++.+..... -+-.+.-.......+..-.++.+++.+|+|++|+
T Consensus        12 lgg~n~~~~~avf-SnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVF-SNDAKFLFLCT-GNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceeccccc-ccCCcEEEEee-CCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            3343333344467 99999988766 6789999999998775222 1222222222222223347888999999999999


Q ss_pred             cccccCCcc------cceeeeccCCCCcCCCcc-eeccCCCeee-----------eeeee--------eeccCCCCeEEE
Q 012699          100 LEFEDVGAG------DIIQMFNDGLYTENGRDA-QGEEDFPEVK-----------VDFLE--------TFLGHTSPISCC  153 (458)
Q Consensus       100 ~~~~~~~~~------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-----------~~~~~--------~~~~h~~~v~~~  153 (458)
                      .........      ...... ..++-.....+ +.........           --.+.        .+.+|.. -.++
T Consensus        89 ~~~~~Llkt~~~~~~v~~~~~-~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I  166 (792)
T KOG1963|consen   89 WSDGELLKTFDNNLPVHALVY-KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSI  166 (792)
T ss_pred             CCCcEEEEEEecCCceeEEEe-chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccE
Confidence            765331100      000000 01110000000 0000000000           01111        1223333 3567


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEecCCCC--CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC--Cceeee
Q 012699          154 RFSSSGNNIASASVDGTVRIWTYDSST--PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA--KRVVCD  229 (458)
Q Consensus       154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~  229 (458)
                      .+++.|.+.+..- +..+.+|+.....  .........|.-.+.+.+++ +++++++++..||.|.+|.--.  +.....
T Consensus       167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s-pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~  244 (792)
T KOG1963|consen  167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS-PNERYLAAGDSDGRILVWRDFGSSDDSETC  244 (792)
T ss_pred             EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEec-cccceEEEeccCCcEEEEeccccccccccc
Confidence            8888887665554 4568889887643  12222334455568999999 8899999999999999996433  221111


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (458)
                      ...|-|...|.+++|+++|.++++|+..             |.+.+|.+.+++..  + ++.-..+|..+.++||+.+.+
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E-------------~VLv~Wq~~T~~kq--f-LPRLgs~I~~i~vS~ds~~~s  308 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGRE-------------GVLVLWQLETGKKQ--F-LPRLGSPILHIVVSPDSDLYS  308 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccc-------------eEEEEEeecCCCcc--c-ccccCCeeEEEEEcCCCCeEE
Confidence            1223344789999999999999999998             59999999998832  2 234446799999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeeeeCC-----------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          310 ASAVDGMIHMFDMSAGLQITGWPAH-----------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       310 ~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +...|..|.+..+.+.+...++.+-           .+-.+.++++|..+.++-.+..|.|.+||+.+.........+..
T Consensus       309 l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~  388 (792)
T KOG1963|consen  309 LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE  388 (792)
T ss_pred             EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence            9999999999988665443333321           33467788999777888899999999999998776654433322


Q ss_pred             ccCC-C-CCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccC-----CCCCcEEEEEECCC-C
Q 012699          379 FCDP-E-SSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTL-----PHGAAITTVDWHPT-L  440 (458)
Q Consensus       379 ~~~~-~-~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~-----~h~~~v~~~~~~~~-~  440 (458)
                      -... . ...-.+++++.+..|.++++.-.          .-.+++|.......-..+.     +|...+...+|.+. .
T Consensus       389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r  468 (792)
T KOG1963|consen  389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR  468 (792)
T ss_pred             cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence            2111 1 23446788888889999998642          2368899887665443322     78877766666443 3


Q ss_pred             C-eEEEecCCCcEEEEeC
Q 012699          441 P-MFLTGSADHSVQVMSL  457 (458)
Q Consensus       441 ~-~l~s~~~dg~v~iw~l  457 (458)
                      . .+++++.||.++||-+
T Consensus       469 s~~~vta~~dg~~KiW~~  486 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVF  486 (792)
T ss_pred             cceeEEeccCCeEEEEEE
Confidence            3 7999999999999976

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.5e-20  Score=156.32  Aligned_cols=298  Identities=14%  Similarity=0.167  Sum_probs=219.2

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc---ccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA---TTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      .-+++|...|+++.| ++++++||+|+.|...++|.++.--..   .+|..+.--..+..+.+.|.....++.+|..+++
T Consensus        50 KD~~~H~GCiNAlqF-S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQF-SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeee-ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            457899999999999 999999999999999999998743221   4454444444455677889999999999999999


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee--ccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF--LGHTSPISCCRFSSSGNNIASASVDGTVR  172 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  172 (458)
                      +...+++..+                                  .+..+  ....+.|+.+..+|..+.|++.+.++.|.
T Consensus       129 VI~HDiEt~q----------------------------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~  174 (609)
T KOG4227|consen  129 VIKHDIETKQ----------------------------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS  174 (609)
T ss_pred             eEeeecccce----------------------------------eeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence            9998887643                                  11111  12346899999999999999999999999


Q ss_pred             EEecCCCC-CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee-eecc----CCCCCCceeeeeecC
Q 012699          173 IWTYDSST-PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV-CDLN----TTDAFPSVLDLKCSP  246 (458)
Q Consensus       173 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~----~~~~~~~v~~~~~~~  246 (458)
                      +||..... ..........+.....+.|+|....+|++.+..+-+.+||.+..... ....    .......-....|+|
T Consensus       175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~  254 (609)
T KOG4227|consen  175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP  254 (609)
T ss_pred             EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence            99997765 33333333455678899999989999999999999999998754321 1111    111112235688999


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC------CcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP------PAITSLCFNHNGKILAASAVDGMIHMF  320 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~v~  320 (458)
                      +|..+.+--...             .-.+||+.+.++ ..++....+      ..+.+++|..+- .+++|+.+=.|++|
T Consensus       255 ~G~Q~msiRR~~-------------~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~W  319 (609)
T KOG4227|consen  255 SGNQFMSIRRGK-------------CPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIW  319 (609)
T ss_pred             CCCeehhhhccC-------------CCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEE
Confidence            999888766543             455677765333 233332111      245667776554 48999999999999


Q ss_pred             eCCC-----C------------------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          321 DMSA-----G------------------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       321 d~~~-----~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      .+..     |                  +.+..+++|..-++.+.|+|...+|++.+-.+.+++|.-.
T Consensus       320 klP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  320 KLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            8742     1                  2356778999999999999999999999999999999755

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.88  E-value=5.4e-20  Score=149.62  Aligned_cols=333  Identities=12%  Similarity=0.124  Sum_probs=224.1

Q ss_pred             eeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccc
Q 012699           30 ANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFE  103 (458)
Q Consensus        30 ~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~  103 (458)
                      ..| ||+|+++|+++.- .+.|-|.++-+..      ..+.++.|..+.          ...+.....++.+.+|++..+
T Consensus        14 c~f-Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads----------~~ilC~~yk~~~vqvwsl~Qp   81 (447)
T KOG4497|consen   14 CSF-SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADS----------CHILCVAYKDPKVQVWSLVQP   81 (447)
T ss_pred             eeE-CCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccc----------eeeeeeeeccceEEEEEeecc
Confidence            478 9999999999866 6777777776554      566678888662          223444566778899998664


Q ss_pred             cCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE-EEEEeCCCcEEEEecCCCCCC
Q 012699          104 DVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPA  182 (458)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~  182 (458)
                      +                                  -.-.+..-..++.+++|||||+. |.+...|-.|.+|.+.+....
T Consensus        82 e----------------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   82 E----------------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             e----------------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            3                                  12233445678899999999965 566677899999999887654


Q ss_pred             CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC
Q 012699          183 SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR  259 (458)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  259 (458)
                      .   .......+..++|+ +++++.+..+.-...-.+++.   .-..+..+....  -....+.|+|||..++.      
T Consensus       128 ~---~~~pK~~~kg~~f~-~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT--~DltgieWsPdg~~laV------  195 (447)
T KOG4497|consen  128 L---LPHPKTNVKGYAFH-PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAV------  195 (447)
T ss_pred             E---ecccccCceeEEEC-CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc--ccccCceECCCCcEEEE------
Confidence            2   22234556889999 788888777653211111111   112223333322  34678999999976554      


Q ss_pred             CCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce------------
Q 012699          260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ------------  327 (458)
Q Consensus       260 ~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------------  327 (458)
                                      ||.--.-.+..+   ...-.+..++|+|.+++|++|+.|+.+++.+--+.++            
T Consensus       196 ----------------wd~~Leykv~aY---e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d  256 (447)
T KOG4497|consen  196 ----------------WDNVLEYKVYAY---ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD  256 (447)
T ss_pred             ----------------ecchhhheeeee---eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence                            442211111111   1223588899999999999999999998866321110            


Q ss_pred             ------------------------------------------------eeeee------CCCCCeEEEEEcCCCCEEEEe
Q 012699          328 ------------------------------------------------ITGWP------AHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       328 ------------------------------------------------~~~~~------~~~~~v~~~~~~~~~~~l~~~  353 (458)
                                                                      +..++      ...-.+.-++|++|..++++-
T Consensus       257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr  336 (447)
T KOG4497|consen  257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR  336 (447)
T ss_pred             chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence                                                            00111      112356779999999998887


Q ss_pred             cC--CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE
Q 012699          354 GS--DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI  431 (458)
Q Consensus       354 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v  431 (458)
                      .+  -+.+-+||+++.+..          .......+|....|+|....|++..+..++++|...+.. .....+..-.|
T Consensus       337 nd~~PnalW~Wdlq~l~l~----------avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~-~V~vP~~GF~i  405 (447)
T KOG4497|consen  337 NDKYPNALWLWDLQNLKLH----------AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-VVGVPKKGFNI  405 (447)
T ss_pred             cCCCCceEEEEechhhhhh----------hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce-EEecCCCCcee
Confidence            54  456999999875322          122345668999999999999999999999999998743 23333444789


Q ss_pred             EEEEECCCCCeEEEecCCC
Q 012699          432 TTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~~~dg  450 (458)
                      ..+.|+.+|..++-.+.|.
T Consensus       406 ~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  406 QKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             eeEEecCCCcEEEEEcCCc
Confidence            9999999999999999885

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=1e-18  Score=156.44  Aligned_cols=251  Identities=10%  Similarity=0.155  Sum_probs=163.6

Q ss_pred             CCCeEEEEeCCCCCEEEEEe-CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEEcCCC
Q 012699          147 TSPISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWNVDAK  224 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~  224 (458)
                      .+....++++|++++|+.++ .++.|.+|+++...................++|+ ++++++++++ .++.|.+|++++.
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCC
Confidence            34566889999999987664 5788999999732211111122233456789999 5666666554 5889999999743


Q ss_pred             c-eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-----EeecCCCCCcEEE
Q 012699          225 R-VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-----VLPLGEDPPAITS  298 (458)
Q Consensus       225 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-----~~~~~~~~~~i~~  298 (458)
                      . .............+..++++|+++.++++....            +.|.+||+.+...+.     ...... ......
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------------~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~  179 (330)
T PRK11028        113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------------DRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRH  179 (330)
T ss_pred             CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------------CEEEEEEECCCCcccccCCCceecCC-CCCCce
Confidence            2 111111111113467788999999887766543            599999997633221     111111 234578


Q ss_pred             EEEccCCCEEEEEec-CCeEEEEeCCC--Cc--eeeeeeCC------CCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC
Q 012699          299 LCFNHNGKILAASAV-DGMIHMFDMSA--GL--QITGWPAH------DSAISSILFGPDETSIFSLGS-DGKIIEWSLQN  366 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~-dg~i~v~d~~~--~~--~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  366 (458)
                      ++|+|++++++++.. ++.|.+|++..  ++  .+..+..+      ......+.++|++++++++.. ++.|.+|++..
T Consensus       180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            999999999988876 89999999973  22  23333221      112346889999999998854 78999999976


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG  417 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~  417 (458)
                      ...........      .....+..++++|+|++|+++.. +++|.+|+++.
T Consensus       260 ~~~~~~~~~~~------~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        260 DGSVLSFEGHQ------PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCCeEEEeEEE------eccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            44222111100      01124567899999999998886 78999998853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1e-19  Score=169.33  Aligned_cols=294  Identities=19%  Similarity=0.305  Sum_probs=208.9

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-cCCCceEEEEEec-CCCeEEEEEcCCCcEEEEEcC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-YCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      +...+-..+.|+|=...++++...-.|+|||.+.++........ .....|..+.+-. .+..++++|+.||.|+||+--
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            44456677889998888999887789999999887765322221 2345688888752 355789999999999999742


Q ss_pred             C-----CceeeeccCCCC-----CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          223 A-----KRVVCDLNTTDA-----FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       223 ~-----~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      .     .+.+.....-..     .+.-.-+.|......+++++.-+             .|+|||.........+... .
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-------------~IRIWDa~~E~~~~diP~~-s 1207 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-------------SIRIWDAHKEQVVADIPYG-S 1207 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee-------------EEEEEecccceeEeecccC-C
Confidence            2     122222211110     01113356666666666666543             9999999987777777654 3


Q ss_pred             CCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCC---ceeeeeeCCCCC--eEEEEEcCCCC-EEEEecCCCeEEEEecc
Q 012699          293 PPAITSLCFNH-NGKILAASAVDGMIHMFDMSAG---LQITGWPAHDSA--ISSILFGPDET-SIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       293 ~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~iwd~~  365 (458)
                      ...++++.-+- .|+.+++|..||.|++||.+..   ..+..++.|+..  |..+.+.+.|- .|++|+.||.|++||++
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            45567665543 4789999999999999998864   347778889887  99999998665 49999999999999999


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC------CCCCcEEEEEECCC
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL------PHGAAITTVDWHPT  439 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~~~  439 (458)
                      ......    .......-...+..+++..+++...+|+|+. +.|.||++.+........      ...+.+.+++|||.
T Consensus      1288 ~~~~e~----~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKET----FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             cCcccc----cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence            741110    0011111111335899999999999999999 999999998764322111      23467899999999


Q ss_pred             CCeEEEecCCCcEEEEeC
Q 012699          440 LPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       440 ~~~l~s~~~dg~v~iw~l  457 (458)
                      -.+||+|+.|.+|.||..
T Consensus      1363 ~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             hHhhhhccCCceEEEeec
Confidence            999999999999999974

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=1.5e-20  Score=152.72  Aligned_cols=249  Identities=15%  Similarity=0.199  Sum_probs=187.5

Q ss_pred             CCCCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          146 HTSPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       146 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      |...-..++|+-+    ..++|.++.-|.|+|.|+.+++...  ....|+..|..+.++|.+.+++++++.|..|++|++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--ceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            5666667777653    4578999999999999999887754  466789999999999999999999999999999999


Q ss_pred             CCCceeeeccCC-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE--------------
Q 012699          222 DAKRVVCDLNTT-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV--------------  286 (458)
Q Consensus       222 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~--------------  286 (458)
                      ++..++..+..- .|...|.++.|++++..+++++.|.             .+++|++...+....              
T Consensus       166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-------------slk~W~l~~~~f~~~lE~s~~~~~~~t~~  232 (385)
T KOG1034|consen  166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-------------SLKLWRLNVKEFKNKLELSITYSPNKTTR  232 (385)
T ss_pred             cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-------------eEEEEecChhHHhhhhhhhcccCCCCccC
Confidence            999999887653 3557899999999999999999995             999999974221111              


Q ss_pred             -----------e-ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cc-------------eeeeeeCCCCCeEE
Q 012699          287 -----------L-PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GL-------------QITGWPAHDSAISS  340 (458)
Q Consensus       287 -----------~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~-------------~~~~~~~~~~~v~~  340 (458)
                                 + +...|...|-|+.|-  |.++++=+-++.|..|..-. .+             .+..+.-....|+-
T Consensus       233 pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf  310 (385)
T KOG1034|consen  233 PFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF  310 (385)
T ss_pred             cCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence                       0 112234445555554  56888888888999998721 11             12333344445665


Q ss_pred             EE--EcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          341 IL--FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       341 ~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      +.  |.|-+++||.|...|.+.+||+++...+...    . .........|...+||.||.+|+..+.|+.|.-||.-
T Consensus       311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t----t-l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT----T-LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc----e-EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            55  4567789999999999999999987654211    1 1112345678999999999999999999999999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=2.8e-18  Score=160.77  Aligned_cols=289  Identities=23%  Similarity=0.444  Sum_probs=222.9

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC-CCCccccccCC-CceEEEEE-ecCCCeEEEEEcC-CCcEE
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST-PASRNATIYCG-TEIMSLEW-ECKSDRLLLIGTA-DGGIK  217 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~-~~v~~~~~-~~~~~~~l~~~~~-dg~i~  217 (458)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+..... ...  ...... ..+..+.+ .+.....++..+. |+.+.
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK--SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE--EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            456899999999999999999999999999999988775 221  111111 35666666 5333325555444 99999


Q ss_pred             EEEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeec-ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          218 AWNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA-SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       218 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      +|+... ......+..+.  ..+..+.++|++..++.++. +             +.+++|+.........+.  .|...
T Consensus       138 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~~~~~  200 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLD-------------GTIKLWDLRTGKPLSTLA--GHTDP  200 (466)
T ss_pred             EEEecCCCeEEEEEecCc--ccEEEEEECCCCCEEEecCCCC-------------CceEEEEcCCCceEEeec--cCCCc
Confidence            999998 66666666555  67889999999998887764 4             599999999877777664  47788


Q ss_pred             EEEEEEccCCC-EEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          296 ITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       296 i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      +.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++..+++++.|+.+++|++.........
T Consensus       201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  279 (466)
T COG2319         201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT  279 (466)
T ss_pred             eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence            99999999998 55555899999999998787777 688888875 4489999989999999999999999976552211


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEEEe-cCCC
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFLTG-SADH  450 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~-~~dg  450 (458)
                      .        ..+...+..+.|+|++..+++++.++.+.+|+...........  .|...+..+.|.+++..++.+ ..|+
T Consensus       280 ~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  351 (466)
T COG2319         280 L--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG  351 (466)
T ss_pred             E--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence            1        2457789999999999999888888889999888776555554  788889999994332455555 6889


Q ss_pred             cEEEEeCC
Q 012699          451 SVQVMSLS  458 (458)
Q Consensus       451 ~v~iw~l~  458 (458)
                      .+++|++.
T Consensus       352 ~~~~~~~~  359 (466)
T COG2319         352 TIRLWDLR  359 (466)
T ss_pred             cEEeeecC
Confidence            99999863

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.86  E-value=3.1e-20  Score=151.02  Aligned_cols=310  Identities=12%  Similarity=0.142  Sum_probs=210.1

Q ss_pred             CCCcCCCcceeccCCCeeeeeeeeeeccC-----CCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCC
Q 012699          118 LYTENGRDAQGEEDFPEVKVDFLETFLGH-----TSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCG  191 (458)
Q Consensus       118 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~  191 (458)
                      .|||+|+++++.... .+.++...+++-|     -+.|..+.|..|..+++.+ ..|+.|.+|++...+...  ......
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--kIdeg~   91 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--KIDEGQ   91 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE--EeccCC
Confidence            478999999988776 3333444444444     3568889999988776554 678899999998766543  233456


Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      .++.+++|+|++..+|.+...+-.|.+|.+.+.+....-...   ..+..++|+|+|++.+..+..+..          .
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK---~~~kg~~f~~dg~f~ai~sRrDCk----------d  158 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK---TNVKGYAFHPDGQFCAILSRRDCK----------D  158 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc---cCceeEEECCCCceeeeeecccHH----------H
Confidence            788999999665578888888999999999987765432222   346889999999998887764310          0


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (458)
                      .+.+...+.......+..+.  -..+.+.|+|||..|++=..  +-.|+.|.            -.-.+..++|+|.+++
T Consensus       159 yv~i~~c~~W~ll~~f~~dT--~DltgieWsPdg~~laVwd~~Leykv~aYe------------~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  159 YVQISSCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------------RGLGLKFVEWSPCNQF  224 (447)
T ss_pred             HHHHHhhHHHHHHHhcCCCc--ccccCceECCCCcEEEEecchhhheeeeee------------eccceeEEEeccccce
Confidence            22333333344444444332  34688999999998876322  11122221            1235778999999999


Q ss_pred             EEEecCCCeEEEEeccCCCe---------------------------------------------------------eEE
Q 012699          350 IFSLGSDGKIIEWSLQNQGQ---------------------------------------------------------VLW  372 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~---------------------------------------------------------~~~  372 (458)
                      |+.|+.|+.+|+.+--+-+.                                                         +..
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            99999999998866432000                                                         000


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                      ................+..++||+|..++++-..+  +.+.+||+...+ +....-...+|....|+|....|+.+....
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-l~avLiQk~piraf~WdP~~prL~vctg~s  383 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-LHAVLIQKHPIRAFEWDPGRPRLVVCTGKS  383 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-hhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence            00011111122234567779999999999987765  689999998763 344445667999999999999888887777


Q ss_pred             cEEEEeCC
Q 012699          451 SVQVMSLS  458 (458)
Q Consensus       451 ~v~iw~l~  458 (458)
                      .+++|..+
T Consensus       384 rLY~W~ps  391 (447)
T KOG4497|consen  384 RLYFWAPS  391 (447)
T ss_pred             eEEEEcCC
Confidence            89999753

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=6.3e-19  Score=160.97  Aligned_cols=267  Identities=16%  Similarity=0.193  Sum_probs=193.4

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--ee--eccCCCCCCceeeeee
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--VC--DLNTTDAFPSVLDLKC  244 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~--~~~~~~~~~~v~~~~~  244 (458)
                      +.+.+|++.....  .........+|.++.|+|.+..+++.|+.+|.|.+||++.+..  ..  ....+.|..++..+.|
T Consensus       222 ~~~~vW~~~~p~~--Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNT--PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCC--ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            4789999987632  3345667889999999999999999999999999999998765  22  2333445578888888


Q ss_pred             cCCCCe--EEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecC---------CCCCcEEEEEEcc-CCCEEEEE
Q 012699          245 SPVEPI--FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLG---------EDPPAITSLCFNH-NGKILAAS  311 (458)
Q Consensus       245 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~---------~~~~~i~~~~~~~-~~~~l~~~  311 (458)
                      ..+..-  +++++.|             |.|..|+++...... .....         .....+++++|.+ +...+++|
T Consensus       300 ~~~~~~~~f~s~ssD-------------G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG  366 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSD-------------GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG  366 (555)
T ss_pred             eccCCCCceEEEecC-------------CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence            876555  8888877             699999887543311 11110         1224688999988 45679999


Q ss_pred             ecCCeEEEEeCCCC--------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          312 AVDGMIHMFDMSAG--------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       312 ~~dg~i~v~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      +.+|.|..-+....        +....+..|.++|+++.++|=+..++..+.|.+++||.......+        .....
T Consensus       367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P--------l~~~~  438 (555)
T KOG1587|consen  367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP--------LLSLD  438 (555)
T ss_pred             cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc--------chhhh
Confidence            99999887443221        223456678999999999996655444444999999998732222        22223


Q ss_pred             CCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCC--cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          384 SSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHA--SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+...+++++|||-. ..++++..+|.+.+||+....  +......+....+.+.|++.|+.|+.|...|.+.+|+++
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            344559999999976 456677779999999996543  233333446677888999999999999999999999983

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.3e-19  Score=143.33  Aligned_cols=260  Identities=18%  Similarity=0.247  Sum_probs=186.0

Q ss_pred             eeeccCCCCeEEEEeCCC-CCEEEEEeCC-------CcEEEEecCCCCCCCcc--------ccccCCCceEEEEEecCCC
Q 012699          141 ETFLGHTSPISCCRFSSS-GNNIASASVD-------GTVRIWTYDSSTPASRN--------ATIYCGTEIMSLEWECKSD  204 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d-------g~v~iwd~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~  204 (458)
                      +.|..|.+.|..++-+|- .+.|+|+..+       ..+.||.+.........        ....+-+.|.|+.|.| ++
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P-ns  135 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP-NS  135 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC-CC
Confidence            467789999999999994 5566766542       24779998654332110        0112335899999995 67


Q ss_pred             eEEEEEcCCCcEEEEEcCCCce-eeeccCCC---CCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699          205 RLLLIGTADGGIKAWNVDAKRV-VCDLNTTD---AFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      ..+++-. |..|.+|+++.+.. ...+....   +....++-+|+|  ++..+++.+.              +++..||+
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d--------------~tl~~~D~  200 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD--------------STLQFWDL  200 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC--------------CcEEEEEc
Confidence            7777665 78999999987765 33332221   123456677887  5667776665              49999999


Q ss_pred             CCCceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcC-CCCEEEEecC
Q 012699          279 KTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGP-DETSIFSLGS  355 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  355 (458)
                      ++.+....+. ..|...+..+.|+|+.+ +|++++.||.|++||.+. ..+++.+.+|...|+++.|+| ...++++++.
T Consensus       201 RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S  279 (370)
T KOG1007|consen  201 RTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS  279 (370)
T ss_pred             cchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence            9988887775 56778899999999865 678899999999999987 567899999999999999999 4457889999


Q ss_pred             CCeEEEEeccCCCe---eEE-----------------eecCCcccCCCCCCCceeEEEEccCCCE-EEEEeCCccEEEEE
Q 012699          356 DGKIIEWSLQNQGQ---VLW-----------------TRNCSRFCDPESSKSCRHEMALDVNGRR-LLVTSGSVRAPIYQ  414 (458)
Q Consensus       356 dg~i~iwd~~~~~~---~~~-----------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~i~i~~  414 (458)
                      |..|.+|....-..   +..                 ......+.....|...|++++||.-..+ +|+-+.||++.|-.
T Consensus       280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence            99999998753210   000                 0000112234568889999999986655 56678899998876


Q ss_pred             ccC
Q 012699          415 VRG  417 (458)
Q Consensus       415 ~~~  417 (458)
                      +..
T Consensus       360 V~r  362 (370)
T KOG1007|consen  360 VPR  362 (370)
T ss_pred             CCh
Confidence            643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=2.2e-20  Score=147.18  Aligned_cols=300  Identities=15%  Similarity=0.160  Sum_probs=184.9

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +..|+.|...|+++.| ..++. |.+|..-|.+++|.+++.+....+.....-+    +.-...-.+.-+.+-+.|..+.
T Consensus         7 ~fvLRp~~~~v~s~~f-qa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~----it~lq~~p~d~l~tqgRd~~L~   80 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLF-QANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLF----ITNLQSIPNDSLDTQGRDPLLI   80 (323)
T ss_pred             eeEeccccchheehhh-ccchh-hhcccccceEEEEEeecCccchhhhhhccce----eeceeecCCcchhhcCCCceEE
Confidence            4578899999999999 66665 8899999999999999987664433110000    0000011225567777888888


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                      +|++.......... -..+..-|.                   ...+.........+.+.|+..     + |- +.+=|.
T Consensus        81 lw~ia~s~~i~i~S-i~~nslgFC-------------------rfSl~~~~k~~eqll~yp~rg-----s-de-~h~~D~  133 (323)
T KOG0322|consen   81 LWTIAYSAFISIHS-IVVNSLGFC-------------------RFSLVKKPKNSEQLLEYPSRG-----S-DE-THKQDG  133 (323)
T ss_pred             EEEccCcceEEEee-eeccccccc-------------------cceeccCCCcchhheecCCcc-----c-ch-hhhhcc
Confidence            88886622100000 000001110                   001111111111222222110     0 00 111111


Q ss_pred             CCCCC--CCccccccCCCceEEEEEecCCC--eEEEEEcCCCcEEEEEcCCCceeeeccC--------CCCCCceeeeee
Q 012699          177 DSSTP--ASRNATIYCGTEIMSLEWECKSD--RLLLIGTADGGIKAWNVDAKRVVCDLNT--------TDAFPSVLDLKC  244 (458)
Q Consensus       177 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~~~v~~~~~  244 (458)
                      .....  +.........+.+.+..+....+  -++++|.++|.+.+||+.++..+..+..        ..+..++.++.+
T Consensus       134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy  213 (323)
T KOG0322|consen  134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY  213 (323)
T ss_pred             CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence            11110  00111122234566666543333  4677788899999999999854433322        223367888888


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--ce--eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--KA--MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF  320 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  320 (458)
                      .+....-++++.+.             .+..|.+...  ..  ...+++  ....+..+.+-||++.+|+++.|+.|+||
T Consensus       214 as~~~rGisgga~d-------------kl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVy  278 (323)
T KOG0322|consen  214 ASSCDRGISGGADD-------------KLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVY  278 (323)
T ss_pred             chhhcCCcCCCccc-------------cceeeeeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEE
Confidence            87766666666654             7777776542  22  222222  22458889999999999999999999999


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          321 DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       321 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      ..++.+++..++.|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus       279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999999999999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=3.6e-19  Score=142.37  Aligned_cols=248  Identities=18%  Similarity=0.257  Sum_probs=178.2

Q ss_pred             CCCceEEEEEe--cCCCeEEEEEcC----CCcEEEEEc--CCCceeeeccCCCCCCceeeeeecCCCC----eEEEeecc
Q 012699          190 CGTEIMSLEWE--CKSDRLLLIGTA----DGGIKAWNV--DAKRVVCDLNTTDAFPSVLDLKCSPVEP----IFVSAAAS  257 (458)
Q Consensus       190 ~~~~v~~~~~~--~~~~~~l~~~~~----dg~i~~wd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~  257 (458)
                      ..-++.++.|+  |....+|+.|+.    .+.|.+..+  ++++.+..-. .++.-+++.+.|.|+..    -+++.+.|
T Consensus        43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D  121 (364)
T KOG0290|consen   43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD  121 (364)
T ss_pred             CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcccC
Confidence            34456778886  234567787764    345555544  3455444333 34556899999999874    23333333


Q ss_pred             cCCCCcceeeccceeEEEEECCC--CceeEE-----eecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCce--
Q 012699          258 RRYGSSNIYSWGFASLTVWNMKT--WKAMTV-----LPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQ--  327 (458)
Q Consensus       258 ~~~~~~~~~~~~~g~i~i~d~~~--~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~--  327 (458)
                                    .+++|.+..  .+....     -+...+..++++..|+. +.+++.+.+-|-+..|||++++..  
T Consensus       122 --------------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~  187 (364)
T KOG0290|consen  122 --------------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT  187 (364)
T ss_pred             --------------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence                          999998873  222111     11234566899999987 677899999999999999998633  


Q ss_pred             -eeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEE
Q 012699          328 -ITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVT  404 (458)
Q Consensus       328 -~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~  404 (458)
                       ..++-+|..+|..++|...+ ..|++.+.||.+|+||++.........+      ......+...++|+++. +++|+-
T Consensus       188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE------~p~~~~pLlRLswnkqDpnymATf  261 (364)
T KOG0290|consen  188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE------DPSPSTPLLRLSWNKQDPNYMATF  261 (364)
T ss_pred             eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec------CCCCCCcceeeccCcCCchHHhhh
Confidence             66778999999999999855 4789999999999999997644332211      11225567889998854 667765


Q ss_pred             eC-CccEEEEEccCCCc-ccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699          405 SG-SVRAPIYQVRGHAS-GMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       405 ~~-~~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~  458 (458)
                      .. ...|.|.|++.... +.++.+|.+.|+.++|.|... .|+|||+|..+.|||+.
T Consensus       262 ~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  262 AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            44 46799999987654 456669999999999999876 89999999999999984

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.4e-19  Score=149.29  Aligned_cols=201  Identities=19%  Similarity=0.328  Sum_probs=153.8

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      .+++|+++|..|++++.||++|||++.+.....  ....|+.+|.++.|+ +++..|++-+.| ..+||+.+++..+...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--EEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh--hhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            789999999999999999999999987765543  455688999999999 889999999999 9999999999776665


Q ss_pred             cCCCCCCceeeeeecCCC---CeEEEeecccCCCCcceeeccceeEEEEECCCCce---eEEeecCCCCCcEEEEEEccC
Q 012699          231 NTTDAFPSVLDLKCSPVE---PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---MTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      ...........+.|..++   .+.+.+.....           +.|+.||+..++.   .+..+.-.....|++++.+++
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~-----------~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d  292 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPG-----------GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD  292 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCC-----------CceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence            543333445667777766   33333322211           4666666543332   111111122346999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      |++++.|+.||.|.|++..+.+.++.. +.|...|+.+.|+|+.+++++.+.|.+..+..+.-
T Consensus       293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999999887776654 48999999999999999999999999998888764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.8e-20  Score=158.11  Aligned_cols=308  Identities=13%  Similarity=0.177  Sum_probs=223.9

Q ss_pred             eeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCC
Q 012699          136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADG  214 (458)
Q Consensus       136 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg  214 (458)
                      ++.....|.+|.+.|..+.|+..|..|++|+.|..|.+||.......... ...|...|....|-|. +.+.+++++.||
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc-ccccccchhhhhccCCCCCcCceeccccC
Confidence            33566788999999999999999999999999999999999887765332 2345556666677764 456789999999


Q ss_pred             cEEEEEcC-CCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          215 GIKAWNVD-AKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       215 ~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      .+++=.+. ++.+..+.....+.+++..++..|+.. .|.+++.|             +.+.-+|++...+...+....+
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD-------------~~v~~~Dlr~~~pa~~~~cr~~  276 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED-------------AVVFHIDLRQDVPAEKFVCREA  276 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc-------------cceeeeeeccCCccceeeeecc
Confidence            99988765 444444555556668899999999877 45666666             5888899988776655543222


Q ss_pred             -CC---cEEEEEEccCCC-EEEEEecCCeEEEEeCCCCce------eeeeeC------CCCCeEEEEEcCCCCEEEEecC
Q 012699          293 -PP---AITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQ------ITGWPA------HDSAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       293 -~~---~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~------~~~~~~------~~~~v~~~~~~~~~~~l~~~~~  355 (458)
                       ..   ....++..|... .+++|+.|..+++||.+.-..      +..+-.      ..-.|++++|+.++.-|.++-.
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence             22   467888998654 889999999999999865211      222222      2346899999987777777777


Q ss_pred             CCeEEEEeccCCCe--eEEe----ecCCcccCCCCCCCceeEEE-EccCCCEEEEEeCCccEEEEEccCCCcccccCCCC
Q 012699          356 DGKIIEWSLQNQGQ--VLWT----RNCSRFCDPESSKSCRHEMA-LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG  428 (458)
Q Consensus       356 dg~i~iwd~~~~~~--~~~~----~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~  428 (458)
                      |-.|+++.-.-+.-  +...    ...+...........|..+. |-|...|+++|+.-|.|.||+-.+.+.+..+.+-.
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr  436 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR  436 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc
Confidence            88899994332111  1100    00111112222233466665 46889999999999999999999998777777766


Q ss_pred             CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          429 AAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       429 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ..|+|+.=||--++||++|-|.-|+||..
T Consensus       437 ~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  437 HVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ceEeccCCCCCCchhhccCCccceeeecC
Confidence            69999999999999999999999999964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=4.7e-19  Score=148.08  Aligned_cols=316  Identities=14%  Similarity=0.154  Sum_probs=212.4

Q ss_pred             CcceeeeeeccCCCc-eeeeeecCcceEEeccccccccc---cceeeeecc--CCceeeeeCCccceeEeeccCCCcccc
Q 012699           24 SETIKYANIGQTKNS-TLASGVNEESLLLSTNSSEACAT---TATHMGSAE--MGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        24 ~~~i~~~~~~s~~~~-~l~s~~~d~~~~iw~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      ..+|..+.| ..+.. .|+||+.|..++||.++.....+   .+...+.-.  ....-++.++++++.|++|+.+|.+-+
T Consensus        13 ~~pv~s~df-q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDF-QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEe-ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            456888999 65555 99999999999999998876654   222211111  112234788889999999999999999


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                      |.......             +-.+.     ......-.....+.+++|...|..++|+|++.++++++.|.++++||+.
T Consensus        92 Wk~~~~~~-------------~~~d~-----e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   92 WKQGDVRI-------------FDADT-----EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             EEecCcCC-------------ccccc-----hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            99653110             00000     0000111123566788999999999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc--------CCCCC-------------
Q 012699          178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN--------TTDAF-------------  236 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--------~~~~~-------------  236 (458)
                      .+....  ....|.+-+..++|. +-++++++-+.|...+.+.+...+..+...        .....             
T Consensus       154 ~G~l~~--~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk  230 (434)
T KOG1009|consen  154 AGQLLA--ILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK  230 (434)
T ss_pred             cceeEe--eccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence            987754  345677889999999 667888888888877777766544332222        01111             


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEEEEEEcc------------
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAITSLCFNH------------  303 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~------------  303 (458)
                      .--..++|+|+|.++++...--..+....    .+..++|+-... ++...+  +....+...+.++|            
T Consensus       231 sFFrRlsfTPdG~llvtPag~~~~g~~~~----~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~  304 (434)
T KOG1009|consen  231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVF----RNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEK  304 (434)
T ss_pred             hhhhhcccCCCCcEEEcccceeeeCCcee----eceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccc
Confidence            12345789999999988765432222211    124555554321 222222  22223344444443            


Q ss_pred             ------CCCEEEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          304 ------NGKILAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       304 ------~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                            .+..+++++.+ .|++||.++..++... .-|-..|+.++|++||..|+..|.||...+--++..+
T Consensus       305 ~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  305 FLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             cccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence                  33356666654 7999999988777654 4688899999999999999999999998887776543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=2.2e-19  Score=149.53  Aligned_cols=211  Identities=16%  Similarity=0.255  Sum_probs=165.1

Q ss_pred             eeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCC-----ccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          142 TFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPAS-----RNATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      .+.||+++|..++|+| +...|||||+|.+|.||.+..+....     ......|...|--++|+|...+.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4569999999999999 56789999999999999987654432     12344577789999999989999999999999


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      |.+||+.+++.+.++.   |...|+++.|+.+|..++++..|+             .|++||.++++.+..-..+.. ..
T Consensus       156 v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDK-------------kvRv~dpr~~~~v~e~~~heG-~k  218 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDK-------------KVRVIDPRRGTVVSEGVAHEG-AK  218 (472)
T ss_pred             EEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccc-------------eeEEEcCCCCcEeeecccccC-CC
Confidence            9999999999888877   447899999999999999999996             999999999999887632221 23


Q ss_pred             EEEEEEccCCCEEEEEe---cCCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCC
Q 012699          296 ITSLCFNHNGKILAASA---VDGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQG  368 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  368 (458)
                      -..+.|-.++..+.+|.   .+..+-+||..+-+.   ...+. ..+.|.---|.||.+.++.++. |+.|+.|.+.+..
T Consensus       219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            45566777888655554   367899999766332   23333 2445666667888888776665 9999999998765


Q ss_pred             ee
Q 012699          369 QV  370 (458)
Q Consensus       369 ~~  370 (458)
                      ..
T Consensus       298 P~  299 (472)
T KOG0303|consen  298 PF  299 (472)
T ss_pred             ce
Confidence            43

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=1.3e-20  Score=170.97  Aligned_cols=291  Identities=19%  Similarity=0.242  Sum_probs=210.8

Q ss_pred             HHHHHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-ccceeeeeccCCceeeeeCCccceeEee
Q 012699           10 LEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-TTATHMGSAEMGQTWASSRPALSRFATN   88 (458)
Q Consensus        10 ~~~~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (458)
                      +-++-+.+++|.||.+.|.|++| ...|.++++|++|..++||..++..+. ..-.|.+-..+     .+.+....++++
T Consensus       176 mvqkmk~ikrLlgH~naVyca~f-Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditd-----lavs~~n~~iaa  249 (1113)
T KOG0644|consen  176 MVQKMKNIKRLLGHRNAVYCAIF-DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITD-----LAVSSNNTMIAA  249 (1113)
T ss_pred             HHHHHHHHHHHHhhhhheeeeee-ccccceEeecCccceeeeeeccchhhhccCCCCccccch-----hccchhhhhhhh
Confidence            44555678899999999999999 999999999999999999999988776 23334433344     556667889999


Q ss_pred             ccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCC
Q 012699           89 MSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVD  168 (458)
Q Consensus        89 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  168 (458)
                      +|.|..|++|.+....                                  ++..++||++.|++++|+|-.    +.+.|
T Consensus       250 aS~D~vIrvWrl~~~~----------------------------------pvsvLrghtgavtaiafsP~~----sss~d  291 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDGA----------------------------------PVSVLRGHTGAVTAIAFSPRA----SSSDD  291 (1113)
T ss_pred             cccCceEEEEecCCCc----------------------------------hHHHHhccccceeeeccCccc----cCCCC
Confidence            9999999999986544                                  667789999999999999954    67889


Q ss_pred             CcEEEEecCCCCCC--CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699          169 GTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP  246 (458)
Q Consensus       169 g~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (458)
                      |++++||.+-...+  ..........-+.++.|. .++..+++++.|+.-..|.+....                  |..
T Consensus       292 gt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~------------------~~~  352 (1113)
T KOG0644|consen  292 GTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE-NNGDRFLTGSRDGEARNHEFEQLA------------------WRS  352 (1113)
T ss_pred             CceEeccccccccccCCCCCCcccccceeeeecc-ccccccccccCCcccccchhhHhh------------------hhc
Confidence            99999998721111  111122223446666666 777889999999988877654221                  111


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCC
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAG  325 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~  325 (458)
                      +.-.+++...+.  ....+.+.....+.+|++.++.......  +|...+..+.++|- .+...+++.||...|||+-.+
T Consensus       353 ~~lif~t~ssd~--~~~~~~ar~~~~~~vwnl~~g~l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  353 NLLIFVTRSSDL--SSIVVTARNDHRLCVWNLYTGQLLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             cceEEEeccccc--cccceeeeeeeEeeeeecccchhhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence            111111111110  0111111122488999999988777654  67778899999995 445568899999999999999


Q ss_pred             ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       326 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      .+++.+......+..-+||++|..++....-|.++|......
T Consensus       429 ~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  429 IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             CcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence            888776655667778899999999998888888888876543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.84  E-value=4.9e-19  Score=141.63  Aligned_cols=242  Identities=15%  Similarity=0.293  Sum_probs=177.8

Q ss_pred             cCCCCeEEEEeCCCC-----CEEEEEeCCCcEEEEecCCCCCCC-------ccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          145 GHTSPISCCRFSSSG-----NNIASASVDGTVRIWTYDSSTPAS-------RNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      .|.-+++.+.|.|+.     .+|||++  ..+|+|.+...+...       .........++++..|+.-+.+++.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            688899999999976     3566654  479999987432111       11223345789999999888999999999


Q ss_pred             CCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699          213 DGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP  288 (458)
Q Consensus       213 dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~  288 (458)
                      |-+..+||++++..   ..++-.|+  ..|.+++|...+. .+++.+.|             |.+++||++..+....+.
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~s~~~FASvgaD-------------GSvRmFDLR~leHSTIIY  236 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKGSRDVFASVGAD-------------GSVRMFDLRSLEHSTIIY  236 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecC--cceeEEEeccCccceEEEecCC-------------CcEEEEEecccccceEEe
Confidence            99999999998732   33344444  7899999998665 67778877             699999999877655553


Q ss_pred             cCCC-CCcEEEEEEccC-CCEEEEEecC-CeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEe
Q 012699          289 LGED-PPAITSLCFNHN-GKILAASAVD-GMIHMFDMSA-GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       289 ~~~~-~~~i~~~~~~~~-~~~l~~~~~d-g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd  363 (458)
                      -... ..+...++|+++ -+++|+-..| ..|.+.|++. ..++.++++|.+.|+.++|.|. ...|.++++|..+.+||
T Consensus       237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD  316 (364)
T ss_pred             cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence            2333 457888999985 4566664443 5799999987 5678999999999999999994 56899999999999999


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCC
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGS  407 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~  407 (458)
                      +.......    .....-.-.....|+.+.|+| .+..++.+.++
T Consensus       317 l~q~~~~~----~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  317 LQQMPREN----GEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             cccccccC----CCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence            98653310    000011112567799999996 55677766554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=5.7e-20  Score=159.89  Aligned_cols=265  Identities=14%  Similarity=0.163  Sum_probs=187.4

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC------CCCccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      .++..|.+.|+.+.|.|....|++++.||++++|++....      .........|.++|.|++.. .++..+++|+.||
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDG  366 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCc
Confidence            3778899999999999999999999999999999993211      12223445678999999998 8899999999999


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      +|+.|++....-                   |+..                          +|..  .....  +.+|..
T Consensus       367 ~I~~w~~p~n~d-------------------p~ds--------------------------~dp~--vl~~~--l~Ghtd  397 (577)
T KOG0642|consen  367 TIRCWNLPPNQD-------------------PDDS--------------------------YDPS--VLSGT--LLGHTD  397 (577)
T ss_pred             eeeeeccCCCCC-------------------cccc--------------------------cCcc--hhccc--eecccc
Confidence            999998762221                   0000                          0000  00011  347888


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeE
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      .+..+++|+....|++++.||+++.|+.....+ .++...  .+...++.+-... ...++...-+.-.++++.......
T Consensus       398 avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~  476 (577)
T KOG0642|consen  398 AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLL  476 (577)
T ss_pred             ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhhee
Confidence            899999999888999999999999999876655 333322  2233455553322 122222222223333333322222


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS  451 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  451 (458)
                      ....  ...........+..+.+.|.+.+.+++..++.|+++|..++..+.....|...++++++.|+|.+|++++.||.
T Consensus       477 ~~~s--~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s  554 (577)
T KOG0642|consen  477 IFES--SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS  554 (577)
T ss_pred             eccc--cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce
Confidence            1110  11111223345778899999999999999999999999999988888899999999999999999999999999


Q ss_pred             EEEEeCC
Q 012699          452 VQVMSLS  458 (458)
Q Consensus       452 v~iw~l~  458 (458)
                      |++|.++
T Consensus       555 v~l~kld  561 (577)
T KOG0642|consen  555 VRLWKLD  561 (577)
T ss_pred             eehhhcc
Confidence            9999873

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-18  Score=135.53  Aligned_cols=255  Identities=18%  Similarity=0.267  Sum_probs=174.7

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--------CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      ..|..-+++|.+++|+.|..+|+|.+..+.+...        ........|..+++.++|+   ..+|++++ ||.|+-|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEe
Confidence            3466778999999999999999999998754211        1112224577899999997   44566655 5999998


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      ..+.....      .                                    +.=++|.+.........    .-..|+++
T Consensus        87 ~W~E~~es------~------------------------------------~~K~lwe~~~P~~~~~~----evPeINam  120 (325)
T KOG0649|consen   87 EWNEEEES------L------------------------------------ATKRLWEVKIPMQVDAV----EVPEINAM  120 (325)
T ss_pred             eehhhhhh------c------------------------------------cchhhhhhcCccccCcc----cCCcccee
Confidence            76543211      0                                    12334443322221111    11358999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      ...|..+-++.++.|+.++-||+++|+..+.+++|++.|.+++--.....+++|+.||++++||.++.+...........
T Consensus       121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~  200 (325)
T KOG0649|consen  121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP  200 (325)
T ss_pred             EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence            99998777777778999999999999999999999999999998555558999999999999999998776543322221


Q ss_pred             cCCC-CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          380 CDPE-SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       380 ~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .... ....+|.+++.  +..+|+.|++ ..+.+|.++..+. ...++-.++|..+.|-.|  .+++++.-..|.-|.++
T Consensus       201 ~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~-t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  201 NLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSES-TCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             hhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCc-eEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence            1111 23344555554  4457765544 5589999998754 344455677888888654  57777777778777653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=5.4e-17  Score=131.80  Aligned_cols=240  Identities=20%  Similarity=0.275  Sum_probs=172.1

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC------CcEEEEEcCC
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD------GGIKAWNVDA  223 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~  223 (458)
                      ..+++|+.|..-++.|..+| .+||+.+--+..........+-.+..+-|-  .+-+.++|+.+      ..+.|||-..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence            44599999988888877665 899998754332222222222233333332  23333444443      4799999767


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCceeEEeecCCCCCcEEEEEEc
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      .+++.++...   .+|.++.+.++.  ++..-.              +.|.+|... +.+.+..+.....+....+++-.
T Consensus        85 ~~~i~el~f~---~~I~~V~l~r~r--iVvvl~--------------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   85 ERCIIELSFN---SEIKAVKLRRDR--IVVVLE--------------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT  145 (346)
T ss_pred             CcEEEEEEec---cceeeEEEcCCe--EEEEec--------------CeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence            7777766655   578899888764  333333              399999987 56666666655555566666555


Q ss_pred             cCCCEEEE-EecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-EEEEeccCCCeeEEeecCCc
Q 012699          303 HNGKILAA-SAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGK-IIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       303 ~~~~~l~~-~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~  378 (458)
                      .+..+||. |..-|.|.|-|+...+.  ...+.+|.+.|.|++.+.+|..+||+|..|+ |||||..++......++.  
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG--  223 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG--  223 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--
Confidence            45556665 44569999999987554  4678999999999999999999999999998 899999998776654432  


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                           .....+.+++|||++.+||+++..|+++|+.+...
T Consensus       224 -----~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  224 -----VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -----CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                 34567999999999999999999999999998763

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=7.7e-19  Score=152.00  Aligned_cols=274  Identities=14%  Similarity=0.193  Sum_probs=182.6

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCce---eeeeCCccceeEeeccCCC
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQT---WASSRPALSRFATNMSGND   93 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~   93 (458)
                      +++-..|...|.|+.+ +.+...+.+++++..+.-|+.......-....-.+.|..-.   .........+-++.++.||
T Consensus         7 ~~~k~r~~e~vc~v~w-~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG   85 (737)
T KOG1524|consen    7 ICKKNRNSEKVCCVDW-SSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG   85 (737)
T ss_pred             hhhccccceeEEeecc-cccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence            4455578888988888 88888887777666666666544322200000111111000   0112222344555566666


Q ss_pred             cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699           94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI  173 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  173 (458)
                      .+.+-+-                     .|              +..+....|.+.|.|-.|+|||.-|+|+++||.|++
T Consensus        86 kf~il~k---------------------~~--------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKi  130 (737)
T KOG1524|consen   86 RFVILNK---------------------SA--------------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKI  130 (737)
T ss_pred             eEEEecc---------------------cc--------------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEE
Confidence            6555331                     11              134456789999999999999999999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS  253 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  253 (458)
                      |.-... .  +........+|+|++|.|.....+++.+.  .+.+=.+         ..                     
T Consensus       131 WSrsGM-L--RStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL---------~~---------------------  175 (737)
T KOG1524|consen  131 WSRSGM-L--RSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPL---------AA---------------------  175 (737)
T ss_pred             Eeccch-H--HHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeec---------cc---------------------
Confidence            985432 2  22344567789999999766666665443  2222111         10                     


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  333 (458)
                                                   ....++...|.+-|.++.|++..+.+++|++|-..++||.. |..+..-..
T Consensus       176 -----------------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~  225 (737)
T KOG1524|consen  176 -----------------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA  225 (737)
T ss_pred             -----------------------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh
Confidence                                         01112234677889999999999999999999999999965 788888889


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      |+.+|++++|+|+ +.++.+|.. ++++   .+                 ...+.|..++|||||..++.|+..|.+.+-
T Consensus       226 ~ey~ITSva~npd-~~~~v~S~n-t~R~---~~-----------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  226 EEYAITSVAFNPE-KDYLLWSYN-TARF---SS-----------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             hccceeeeeeccc-cceeeeeee-eeee---cC-----------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            9999999999999 566666543 4441   11                 234568999999999999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=137.80  Aligned_cols=292  Identities=16%  Similarity=0.221  Sum_probs=193.6

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-  225 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-  225 (458)
                      ...+..++|++.-..+|++..|-.|++|+-....+  ..........|.+++|-|.....|+.|+..| |.+|.....- 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p--t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP--TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC--ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence            34577899998666688999999999999766332  2223334568999999988888899998865 8999865321 


Q ss_pred             -----------eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          226 -----------VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       226 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                                 ....++...+ .+|+++.|.+|+..+++++.+.            ..|.+||..++..+....  ...+
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~--~glg  239 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIP--KGLG  239 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccc--cCCC
Confidence                       1112222333 6899999999999999998776            499999999988877653  2345


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe-
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT-  373 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-  373 (458)
                      .++-+.||||+.+|++++-|+..++|+.........+.-..+.|...+|+|+|++|+.... |.-++|.+.-.++.... 
T Consensus       240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL  318 (445)
T ss_pred             ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence            6889999999999999999999999966543333333344568999999999987654432 23445554322211100 


Q ss_pred             -----------e---cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc--------cEEEEEccCCCcccccC-C--CC
Q 012699          374 -----------R---NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV--------RAPIYQVRGHASGMRTL-P--HG  428 (458)
Q Consensus       374 -----------~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------~i~i~~~~~~~~~~~~~-~--h~  428 (458)
                                 .   .+.......-..+.+.+++|+|.|.+||+....+        .|.+||........... +  ..
T Consensus       319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g  398 (445)
T KOG2139|consen  319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG  398 (445)
T ss_pred             CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence                       0   0111111122356789999999999999987654        35566665442222111 1  11


Q ss_pred             CcEEEEEECC---CCCeEEEecCCCcEEEEeC
Q 012699          429 AAITTVDWHP---TLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       429 ~~v~~~~~~~---~~~~l~s~~~dg~v~iw~l  457 (458)
                      ....-++|+|   ++++|..+=..|.+.-|.+
T Consensus       399 e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  399 EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence            2255566666   3446665555677766654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.3e-19  Score=152.55  Aligned_cols=214  Identities=16%  Similarity=0.263  Sum_probs=152.1

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGI  216 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i  216 (458)
                      ...+.|.||++-|+|+.|+.+|.+|++|+.|-.+.|||.-..++.. .....|...|.++.|.|. ++.++++|..|..|
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            4667889999999999999999999999999999999998666553 334567789999999974 55688899999999


Q ss_pred             EEEEcCCCce--------eeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeE--
Q 012699          217 KAWNVDAKRV--------VCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--  285 (458)
Q Consensus       217 ~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--  285 (458)
                      +++|+...+.        ....-...+...|..++..|++ ..+.+++.|             |+++-+|++....-.  
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED-------------GtirQyDiREph~c~p~  186 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED-------------GTIRQYDIREPHVCNPD  186 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC-------------cceeeecccCCccCCcc
Confidence            9999985221        1111112233567888888988 567777777             699999998632111  


Q ss_pred             ------EeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCC--------c----------eeeee-eCCC----
Q 012699          286 ------VLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAG--------L----------QITGW-PAHD----  335 (458)
Q Consensus       286 ------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~--------~----------~~~~~-~~~~----  335 (458)
                            ........-...|+.++|. ..+|++|+.|-..++||.+..        .          ++..+ ++|-    
T Consensus       187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~  266 (758)
T KOG1310|consen  187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ  266 (758)
T ss_pred             ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence                  0011112234678999995 568999999999999994321        1          12211 1222    


Q ss_pred             -------CCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          336 -------SAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       336 -------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                             ..++-+.|+|+|.-|+..-....|+++|+.
T Consensus       267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence                   125667899999876665555578999886

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=2e-18  Score=149.40  Aligned_cols=264  Identities=16%  Similarity=0.229  Sum_probs=186.3

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceE-EEEEec------CCCeEEEEEcCCCcEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIM-SLEWEC------KSDRLLLIGTADGGIK  217 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~------~~~~~l~~~~~dg~i~  217 (458)
                      .|...|.|+.|+.+...+.+++.+..+.-||+...... ....  ...-+. .+-.-+      .....++.++.||.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~   88 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV   88 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence            46777889999988766666554444444454433221 1000  011111 110000      1235788889999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +.+- .++....+..|.  +.+.+-.|+|+|.-+++++.|             |.|++|.-.. ....++.  ....+|.
T Consensus        89 il~k-~~rVE~sv~AH~--~A~~~gRW~~dGtgLlt~GED-------------G~iKiWSrsG-MLRStl~--Q~~~~v~  149 (737)
T KOG1524|consen   89 ILNK-SARVERSISAHA--AAISSGRWSPDGAGLLTAGED-------------GVIKIWSRSG-MLRSTVV--QNEESIR  149 (737)
T ss_pred             Eecc-cchhhhhhhhhh--hhhhhcccCCCCceeeeecCC-------------ceEEEEeccc-hHHHHHh--hcCceeE
Confidence            8873 455555555554  789999999999999999999             6999998543 3333332  2345799


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      |++|.|+...++.+ ..+.+.+=.+.....+-.+++|.+-|.++.|+|..+.+++|+.|-..++||-...          
T Consensus       150 c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----------  218 (737)
T KOG1524|consen  150 CARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----------  218 (737)
T ss_pred             EEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----------
Confidence            99999987766654 3567888788777778889999999999999999999999999999999998643          


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      .+.....+..+|++++|.|+ +.+++++.+ +.++   +        .+..+.|..++|||||..++.|...|.+.+
T Consensus       219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---~--------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---S--------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccccCChhccceeeeeeccc-cceeeeeee-eeee---c--------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            44455678899999999999 666655543 2331   1        124578999999999999999988887754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.9e-18  Score=159.79  Aligned_cols=302  Identities=12%  Similarity=0.160  Sum_probs=208.7

Q ss_pred             eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCC-ceeeeeCCccceeEeeccCCCcccccccccccC
Q 012699           27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMG-QTWASSRPALSRFATNMSGNDSISPSKLEFEDV  105 (458)
Q Consensus        27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~  105 (458)
                      -..+.| .+-...++++.....+.+||.+.++....+..-++.... ..+-.-...+..++.+++.||.|+||+-.....
T Consensus      1067 pk~~~~-hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKF-HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             Cceeee-cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            445667 888889999998899999999998876444322211110 112334445788999999999999999554332


Q ss_pred             CcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc
Q 012699          106 GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN  185 (458)
Q Consensus       106 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  185 (458)
                      +..+.+..+....    +                  .+.+-.+.=.-+.|.....+|+++|.-..|+|||........ .
T Consensus      1146 ~~~eLVTaw~~Ls----~------------------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~-d 1202 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLS----D------------------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA-D 1202 (1387)
T ss_pred             CCceeEEeecccc----c------------------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe-e
Confidence            3334443332210    0                  011111111346787766667666667899999998765442 2


Q ss_pred             ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc---eeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCC
Q 012699          186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR---VVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYG  261 (458)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~  261 (458)
                      ........++++.-+-..++.+++|..||.|++||.+...   .+...+.+....+|..+.+.+.|-. +++++.+    
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~---- 1278 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD---- 1278 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC----
Confidence            2333455677777665678999999999999999987543   4555566665556899999887764 8888887    


Q ss_pred             CcceeeccceeEEEEECCCCceeEEeecCCCC--C-cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC----
Q 012699          262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--P-AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH----  334 (458)
Q Consensus       262 ~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----  334 (458)
                               |.|++||++.......+....|.  + ..+++..++....+|+|+. +.|+||++. |+.+..++.+    
T Consensus      1279 ---------G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1279 ---------GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred             ---------CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence                     69999999985333222222221  2 4899999999999999988 999999986 4444444322    


Q ss_pred             ---CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          335 ---DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       335 ---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                         .+.+.|++|+|..-++|+|+.|.+|.+|...+.
T Consensus      1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence               347799999999989999999999999988754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=9.6e-18  Score=136.17  Aligned_cols=212  Identities=17%  Similarity=0.228  Sum_probs=164.4

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC-CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST-PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      +.--..+|+|.+|++|+..+|.+.....|.||...... .........|...|+.++|. +..+.|++++.|..-++|..
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCcccccc
Confidence            33446899999999999999999999999999988777 33333445677889999999 67778999999999999998


Q ss_pred             -CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEE
Q 012699          222 -DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITS  298 (458)
Q Consensus       222 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~  298 (458)
                       ..++...++.........+++.|+|.++.+++++..+             .|.+|-.+....-  ....-......|++
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar-------------~isVcy~E~ENdWWVsKhikkPirStv~s  151 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR-------------LISVCYYEQENDWWVSKHIKKPIRSTVTS  151 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc-------------EEEEEEEecccceehhhhhCCccccceee
Confidence             5555444444434446799999999999999999875             7777765542221  11112345567999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCC-----C-------------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMS-----A-------------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                      +.|+|++-+|++|+.|+..+||..-     .             |+.+..+....+.+..+.|+|+|..|+-.+.|..+.
T Consensus       152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~  231 (361)
T KOG1523|consen  152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS  231 (361)
T ss_pred             eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence            9999999999999999999999742     1             223334445567899999999999999999999999


Q ss_pred             EEeccCCC
Q 012699          361 EWSLQNQG  368 (458)
Q Consensus       361 iwd~~~~~  368 (458)
                      +-|.....
T Consensus       232 ~~da~~p~  239 (361)
T KOG1523|consen  232 FVDAAGPS  239 (361)
T ss_pred             EeecCCCc
Confidence            99987654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.6e-17  Score=128.57  Aligned_cols=236  Identities=17%  Similarity=0.235  Sum_probs=170.5

Q ss_pred             cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699           82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN  161 (458)
Q Consensus        82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  161 (458)
                      ..++++.++.+|.|.+..+........           -|.|+.             .+-..++|.++|+.++|..  .+
T Consensus        21 ~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~-------------~iv~eqahdgpiy~~~f~d--~~   74 (325)
T KOG0649|consen   21 SKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKL-------------KIVPEQAHDGPIYYLAFHD--DF   74 (325)
T ss_pred             cceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCc-------------ceeeccccCCCeeeeeeeh--hh
Confidence            367889999999999988866432111           122222             2334589999999999983  47


Q ss_pred             EEEEeCCCcEEEEecCCCCCC------Ccccccc-----CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          162 IASASVDGTVRIWTYDSSTPA------SRNATIY-----CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~------~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      |++|+ ||.|+-|........      .......     .-.+|+++...|..+. ++.++.|+.++-||+++|+...++
T Consensus        75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE
Confidence            77776 599999987543220      0011111     1246888888855555 555558999999999999999999


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC--------CcEEEEEEc
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--------PAITSLCFN  302 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--------~~i~~~~~~  302 (458)
                      +.|.  ..+.++.-......+++++.|             |++++||+++++.+..+....++        ..|.+++. 
T Consensus       153 rGHt--DYvH~vv~R~~~~qilsG~ED-------------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-  216 (325)
T KOG0649|consen  153 RGHT--DYVHSVVGRNANGQILSGAED-------------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-  216 (325)
T ss_pred             cCCc--ceeeeeeecccCcceeecCCC-------------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-
Confidence            9887  568888887777788899888             69999999999999887654432        24555554 


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                       +..++++|+ ...+.+|.++..++...++. ..++..+.|..+  .+++++..+.+.-|.+..
T Consensus       217 -~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  217 -NEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             -cCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence             456888876 45799999999988888764 566888888644  778888888899998863

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1e-18  Score=154.32  Aligned_cols=241  Identities=20%  Similarity=0.319  Sum_probs=174.0

Q ss_pred             CCCEEEE--EeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC
Q 012699          158 SGNNIAS--ASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT  233 (458)
Q Consensus       158 ~~~~l~s--~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  233 (458)
                      +..++|.  ++..|.|-||++.....+.  .......+..|+.+.|+|-+.+.|++++.||.|++|.+..+.......  
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--  667 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--  667 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--
Confidence            3445443  3557899999997654332  122344567899999999999999999999999999988765432211  


Q ss_pred             CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-CCCEEEEEe
Q 012699          234 DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-NGKILAASA  312 (458)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~  312 (458)
                                                                      .+...+  ..|...|+++.|+| -...|++++
T Consensus       668 ------------------------------------------------tPe~~l--t~h~eKI~slRfHPLAadvLa~as  697 (1012)
T KOG1445|consen  668 ------------------------------------------------TPEKIL--TIHGEKITSLRFHPLAADVLAVAS  697 (1012)
T ss_pred             ------------------------------------------------Ccceee--ecccceEEEEEecchhhhHhhhhh
Confidence                                                            111222  24667799999999 356899999


Q ss_pred             cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699          313 VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM  392 (458)
Q Consensus       313 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  392 (458)
                      .|-+|++||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|++|+-++..+++.....       .....-..+
T Consensus       698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-------pvgtRgARi  770 (1012)
T KOG1445|consen  698 YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-------PVGTRGARI  770 (1012)
T ss_pred             ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-------CccCcceeE
Confidence            9999999999999999999999999999999999999999999999999999987665543221       122334568


Q ss_pred             EEccCCCEEEEEeCC----ccEEEEEccCCCc-ccccC--CCCCcEEEEEECCCCC-eEEEecCCCcEEEEeC
Q 012699          393 ALDVNGRRLLVTSGS----VRAPIYQVRGHAS-GMRTL--PHGAAITTVDWHPTLP-MFLTGSADHSVQVMSL  457 (458)
Q Consensus       393 ~~s~~g~~l~~~~~~----~~i~i~~~~~~~~-~~~~~--~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l  457 (458)
                      .|..||+++++.+-|    .+|.+|+..+... .....  .-.-.+.--.+.+|.. +|++|-.|..|.+|.+
T Consensus       771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence            899999999887765    4688888765431 11111  1111122223455655 6778888999999875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=9.4e-19  Score=149.70  Aligned_cols=306  Identities=11%  Similarity=0.119  Sum_probs=214.9

Q ss_pred             HHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccc--cceeeeeccCCceeeeeCCccceeEeecc
Q 012699           13 KEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACAT--TATHMGSAEMGQTWASSRPALSRFATNMS   90 (458)
Q Consensus        13 ~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (458)
                      .-.....|..|...|+.+.| ...|..|+||+.|..+.+||...+....  .-.|....-+.+.+  -+ .+..-+++++
T Consensus       131 r~~l~~kL~~H~GcVntV~F-N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFi--P~-s~d~ti~~~s  206 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHF-NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFI--PF-SGDRTIVTSS  206 (559)
T ss_pred             HhhhhhcccCCCCccceeee-cccCceeeccCccceEEeehhhccCcccccccccccchhhhhcc--CC-CCCcCceecc
Confidence            33345688899999999999 9999999999999999999998776552  22222222221111  11 1344566777


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCC
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN-NIASASVDG  169 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg  169 (458)
                      .||.+++-.+....                               ..+..+.+..|.++|.-++.-|+.. -|.+++.|+
T Consensus       207 ~dgqvr~s~i~~t~-------------------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~  255 (559)
T KOG1334|consen  207 RDGQVRVSEILETG-------------------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDA  255 (559)
T ss_pred             ccCceeeeeecccc-------------------------------ceecceecccccCccceeeecCCCCCccccccccc
Confidence            77777765443211                               0112345567999999999999754 489999999


Q ss_pred             cEEEEecCCCCCCCccccccCC-C---ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee------eeccCC----CC
Q 012699          170 TVRIWTYDSSTPASRNATIYCG-T---EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV------CDLNTT----DA  235 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------~~~~~~----~~  235 (458)
                      .+.-.|+....+.......... .   ....++.+|.+...+++++.|..+++||.+.-...      ..+..+    ..
T Consensus       256 ~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~  335 (559)
T KOG1334|consen  256 VVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD  335 (559)
T ss_pred             ceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence            9999999877654433322222 2   46788889888889999999999999997642211      111111    22


Q ss_pred             CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc------------eeEEeecCCC--CCcEEEEEE
Q 012699          236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK------------AMTVLPLGED--PPAITSLCF  301 (458)
Q Consensus       236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~------------~~~~~~~~~~--~~~i~~~~~  301 (458)
                      ...|++++|+.++.-+++.-.+.             .|+++...-+.            ..+. .+.+|  ...|..+.|
T Consensus       336 ~v~ITgl~Ysh~~sElLaSYnDe-------------~IYLF~~~~~~G~~p~~~s~~~~~~k~-vYKGHrN~~TVKgVNF  401 (559)
T KOG1334|consen  336 PVNITGLVYSHDGSELLASYNDE-------------DIYLFNKSMGDGSEPDPSSPREQYVKR-VYKGHRNSRTVKGVNF  401 (559)
T ss_pred             cccceeEEecCCccceeeeeccc-------------ceEEeccccccCCCCCCCcchhhccch-hhcccccccccceeee
Confidence            34689999997776666555553             78888433221            1111 12344  334666654


Q ss_pred             -ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          302 -NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       302 -~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                       -|...|+++|+.-|.|.+|+-.+++.++.+.+-..-|+||.-+|.-..||+++-|.-|+||--...
T Consensus       402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence             577889999999999999999999999988887789999999999999999999999999987543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=3.5e-18  Score=142.44  Aligned_cols=228  Identities=16%  Similarity=0.294  Sum_probs=173.0

Q ss_pred             cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee-------eeccCCCCCCceeeeeecCCCC-eEEEeeccc
Q 012699          187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV-------CDLNTTDAFPSVLDLKCSPVEP-IFVSAAASR  258 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~  258 (458)
                      ...|.++|..++|+|.+++.+++|+.|.+|.+|++..+...       ..+..|.  ..|--++|+|... .|++++.| 
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPtA~NVLlsag~D-  153 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPTAPNVLLSAGSD-  153 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeecccchhhHhhccCC-
Confidence            45677899999999999999999999999999998765443       3333333  6788999999765 66677776 


Q ss_pred             CCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC-C
Q 012699          259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS-A  337 (458)
Q Consensus       259 ~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~  337 (458)
                                  ..|.+|++.+++....+.   |+..|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ .
T Consensus       154 ------------n~v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k  218 (472)
T KOG0303|consen  154 ------------NTVSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK  218 (472)
T ss_pred             ------------ceEEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence                        499999999999887764   889999999999999999999999999999999999988888876 3


Q ss_pred             eEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEE
Q 012699          338 ISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIY  413 (458)
Q Consensus       338 v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~  413 (458)
                      -..+.|-.++..+-||-   .+..+.+||-.+...+......       .....|.---|.||.+.++.++ +|+.|+.|
T Consensus       219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             cceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-------ccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            44566777888554443   3778999999887665433221       2344566667889998887655 58999999


Q ss_pred             EccCCCcccccC---CCCCcEEEEEECCC
Q 012699          414 QVRGHASGMRTL---PHGAAITTVDWHPT  439 (458)
Q Consensus       414 ~~~~~~~~~~~~---~h~~~v~~~~~~~~  439 (458)
                      .+....+...++   ....+=..+.|-|.
T Consensus       292 Eit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  292 EITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             EecCCCceeEEecccccCCcccccccccc
Confidence            998765433332   22334445555553

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=1.4e-16  Score=132.07  Aligned_cols=247  Identities=16%  Similarity=0.265  Sum_probs=178.3

Q ss_pred             CeEEEEeCCCCCEEEEEeCC--CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          149 PISCCRFSSSGNNIASASVD--GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      .|.-+-|+..  ++|..+.+  +.+++.+++....+.   ......+|.++.++   .++|+++-.+ .|.|||+++.+.
T Consensus        48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC---e~~fpt~IL~VrmN---r~RLvV~Lee-~IyIydI~~Mkl  118 (391)
T KOG2110|consen   48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC---EIFFPTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKL  118 (391)
T ss_pred             EEEEeecccc--eeEEEecCCCceEEEEEcccCceEE---EEecCCceEEEEEc---cceEEEEEcc-cEEEEeccccee
Confidence            3555666644  55555443  458888887665543   34457889999986   4556665554 499999999999


Q ss_pred             eeeccCC-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          227 VCDLNTT-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       227 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      +.++... .+...+.++..++.+.+++.-+...           .|.|.+||..+-++...+.  .|.+.+.+++|+++|
T Consensus       119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G  185 (391)
T KOG2110|consen  119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDG  185 (391)
T ss_pred             ehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEE--ecCCceeEEEECCCC
Confidence            9998876 4445577888888777887754432           2899999999988888875  889999999999999


Q ss_pred             CEEEEEecCCe-EEEEeCCCCceeeeeeCCC--CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe---------
Q 012699          306 KILAASAVDGM-IHMFDMSAGLQITGWPAHD--SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT---------  373 (458)
Q Consensus       306 ~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------  373 (458)
                      .+||+++..|+ ||||.+.+|+.+..|+...  ..|.+++|+|++.+|++.|..++|.+|.+.........         
T Consensus       186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~  265 (391)
T KOG2110|consen  186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWF  265 (391)
T ss_pred             CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCccc
Confidence            99999999986 6899999999999887543  36789999999999999999999999999753211000         


Q ss_pred             e------------------cCC-cccCCC-CCCCceeEEEEc--cCCCEEEEEeCCccEEEEEccC
Q 012699          374 R------------------NCS-RFCDPE-SSKSCRHEMALD--VNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       374 ~------------------~~~-~~~~~~-~~~~~v~~~~~s--~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      .                  ... .+.... .....-..+.+.  +..+++.+++.||.++.|.+.-
T Consensus       266 ~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  266 GKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             chhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            0                  000 000000 011111223444  4778999999999999998865

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.2e-17  Score=139.11  Aligned_cols=198  Identities=16%  Similarity=0.174  Sum_probs=151.1

Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM  319 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  319 (458)
                      ..+++++++..+++++.|             |.+|+|+..+.......  ..|...|.++.|+|||++|++-+.| ..+|
T Consensus       148 k~vaf~~~gs~latgg~d-------------g~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~lasig~d-~~~V  211 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-------------GTLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKFLASIGAD-SARV  211 (398)
T ss_pred             eEEEEcCCCCEeeecccc-------------ceEEEEecCcchhhhhh--HhhcCccccceeCCCCcEEEEecCC-ceEE
Confidence            578999999999999998             69999997765555443  3567889999999999999999999 8999


Q ss_pred             EeCCCCceeeeeeCC--CCCeEEEEEcCCC-----CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699          320 FDMSAGLQITGWPAH--DSAISSILFGPDE-----TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM  392 (458)
Q Consensus       320 ~d~~~~~~~~~~~~~--~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  392 (458)
                      |+.+++..+......  ......+.|+.++     ..++....-+.|+.||+........    .+..........+.++
T Consensus       212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~----l~~~~~~~~~~siSsl  287 (398)
T KOG0771|consen  212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF----LRLRKKIKRFKSISSL  287 (398)
T ss_pred             EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc----cchhhhhhccCcceeE
Confidence            999999777665422  3356677888776     2333344466677877764322100    0111222334569999


Q ss_pred             EEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          393 ALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       393 ~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +.|++|++++.|+.+|.|-|++..+.+...... .|...|+.+.|+||.+++++.+.|....|-.|
T Consensus       288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            999999999999999999999998876554444 69999999999999999999998888877654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=2.3e-17  Score=150.90  Aligned_cols=252  Identities=14%  Similarity=0.246  Sum_probs=177.2

Q ss_pred             CCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCC--Cc--cccccCCCceEEEEEecCCC--eEEEEEcCCCcEEE
Q 012699          146 HTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPA--SR--NATIYCGTEIMSLEWECKSD--RLLLIGTADGGIKA  218 (458)
Q Consensus       146 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~--~~--~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~  218 (458)
                      -...|+|+.|+| +..+++.|..+|.|.+||+..+...  ..  .....|..++..+.|.. +.  .-+++++.||.|..
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence            357899999999 5677888999999999999877652  11  22334667899999973 33  44899999999999


Q ss_pred             EEcCCCceeee---c--cC-----CCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEECCCCceeE--
Q 012699          219 WNVDAKRVVCD---L--NT-----TDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--  285 (458)
Q Consensus       219 wd~~~~~~~~~---~--~~-----~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--  285 (458)
                      |+++.-.....   .  ..     ......++.+.|.+.... ++.|+..             |.|.--+....+...  
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~-------------G~v~~~~r~g~~~~~~~  386 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE-------------GKVYKGCRKGYTPAPEV  386 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC-------------cEEEEEeccCCcccccc
Confidence            98765332111   0  11     112245788999887764 4455544             566653333222222  


Q ss_pred             ----EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC-CCceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeE
Q 012699          286 ----VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS-AGLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKI  359 (458)
Q Consensus       286 ----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i  359 (458)
                          ......|.++|.++.++|=+..++..+.|-++++|... ...++..+..+...+++++|||.. ..|+++..||.+
T Consensus       387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l  466 (555)
T KOG1587|consen  387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL  466 (555)
T ss_pred             cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence                11234567889999999966555544459999999988 677888888888889999999965 467788889999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      .+||+......       ............+.+.|++.|+.|++|...|.+++|++...
T Consensus       467 ~iWDLl~~~~~-------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  467 DIWDLLQDDEE-------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ehhhhhccccC-------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            99999864321       11111122445677889999999999999999999999643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=2.8e-17  Score=155.65  Aligned_cols=361  Identities=14%  Similarity=0.065  Sum_probs=224.3

Q ss_pred             HHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-c-cceeeeeccC-CceeeeeCCccceeEeec
Q 012699           13 KEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-T-TATHMGSAEM-GQTWASSRPALSRFATNM   89 (458)
Q Consensus        13 ~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~   89 (458)
                      +...+.+|..|...|+.++..++++.+++|||.||++++|+...-.-. + .-....|++. ++...+.+-..+..+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            445678899999999999996777799999999999999998654333 1 2224567744 445566777788899999


Q ss_pred             cCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee--ccCCCCeEEEEeCC-CCC-EEEEE
Q 012699           90 SGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF--LGHTSPISCCRFSS-SGN-NIASA  165 (458)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~~-~l~s~  165 (458)
                      +.||.+.+.+++.........                           ...+..  ..-...|..-+|.. ++. .|+.+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~---------------------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVA---------------------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred             cCCCeEEEEEcccccccccee---------------------------eeeecccccCCCceEEeecccccccceeEEEE
Confidence            999999998886632110000                           011111  11112233333433 233 67778


Q ss_pred             eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      ..-+.|..||+..............++-|++++.+ +.++.++.|+..|.+.+||++-+.++.....+.+ .++..+..+
T Consensus      1170 T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLC 1247 (1431)
T ss_pred             EeccceEEecchhhhhHHhhhcCccccceeEEEec-CCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEee
Confidence            88899999999877665555555567889999999 6778999999999999999999998888776655 577777766


Q ss_pred             CCCC---eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-C----------------CCCcEEEEEEccCC
Q 012699          246 PVEP---IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-E----------------DPPAITSLCFNHNG  305 (458)
Q Consensus       246 ~~~~---~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~----------------~~~~i~~~~~~~~~  305 (458)
                      |-.+   ..++++...           .+.|.+|++.++.....+-.. +                +.-......+...+
T Consensus      1248 ~~~~~~S~~vs~~~~~-----------~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSS-----------NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred             ccCCCCceEEEecccC-----------CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence            6443   444444411           169999999988766655432 1                00111222233345


Q ss_pred             CEEEEEecCCeEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecCCCeE-EEEeccCCCe----eEEeecCCcc
Q 012699          306 KILAASAVDGMIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSDGKI-IEWSLQNQGQ----VLWTRNCSRF  379 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~----~~~~~~~~~~  379 (458)
                      ..+++|+.|..|+.||....+.. ....+..........+.+ ..++.++.--.. .......+..    ..........
T Consensus      1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred             ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence            68899999999999998765433 223333323333333222 123333221000 0111110000    0011111122


Q ss_pred             cCCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEE
Q 012699          380 CDPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~  414 (458)
                      .....|...|+.+++-.. ..+|++++.||.|+||.
T Consensus      1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            233457778888887654 46788888999999993

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=144.79  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=129.2

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccce--eeeeccCCceeeeeCC--ccceeEeeccCC
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTAT--HMGSAEMGQTWASSRP--ALSRFATNMSGN   92 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~~~~~   92 (458)
                      -+.|.||...|+|+++ +.||.+|+|||+|-.+.|||.-..+..+.|.  |.+.     .+.+.|-  ...+.+++|..|
T Consensus        43 E~eL~GH~GCVN~LeW-n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaN-----IFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEW-NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTAN-----IFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             hhhhccccceecceee-cCCCCEEeecCCcceEEeecchhcceeeeeecccccc-----eeEEeeeccCCCeEEEeccCc
Confidence            3578999999999999 9999999999999999999998665553332  2221     2223333  367899999999


Q ss_pred             CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcE
Q 012699           93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTV  171 (458)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v  171 (458)
                      ..|+++++.....+...                      .+.  .+..+.+..|...|..++-.|++ ..+.++++||++
T Consensus       117 k~i~lfdl~~~~~~~~d----------------------~~~--~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti  172 (758)
T KOG1310|consen  117 KLIKLFDLDSSKEGGMD----------------------HGM--EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI  172 (758)
T ss_pred             ceEEEEecccccccccc----------------------cCc--cchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence            99999998763321111                      010  11445567899999999999988 678999999999


Q ss_pred             EEEecCCCCCCCcc------cccc--CCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          172 RIWTYDSSTPASRN------ATIY--CGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       172 ~iwd~~~~~~~~~~------~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      +-+|++....-...      ....  .--+..++..+|.+..+|++|+.|-..++||.
T Consensus       173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            99999763321110      0111  11356789999999999999999999999994

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2.9e-17  Score=134.52  Aligned_cols=197  Identities=11%  Similarity=0.259  Sum_probs=156.0

Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~  282 (458)
                      ..++++..+|.|++||..+++.+..++.+.  ..+..+.|..  ....+.+++.|             |.|++||++...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~--~~~N~vrf~~~ds~h~v~s~ssD-------------G~Vr~wD~Rs~~  105 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP--ATTNGVRFISCDSPHGVISCSSD-------------GTVRLWDIRSQA  105 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCC--CcccceEEecCCCCCeeEEeccC-------------CeEEEEEeecch
Confidence            568889999999999999999998888776  4566666665  44566677776             699999999988


Q ss_pred             eeEEeecCCCC-CcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCce-eeee-eCCCCCeEEEEEcC-CCCEEEEec
Q 012699          283 AMTVLPLGEDP-PAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQ-ITGW-PAHDSAISSILFGP-DETSIFSLG  354 (458)
Q Consensus       283 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~  354 (458)
                      ....+....++ .+..+++.+-.++.+++|+.    +-.|.+||.+..+. +..+ ..|...|+++.|+| +.++|++||
T Consensus       106 e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS  185 (376)
T KOG1188|consen  106 ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS  185 (376)
T ss_pred             hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence            88877776665 56778888777888888864    66899999998665 5444 57999999999999 667999999


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCccc
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGM  422 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~  422 (458)
                      .||.|.+||+....+      ...+.....+...|..+.|..++ +.|.+-+...+..+|+++.+....
T Consensus       186 vDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  186 VDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             ccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            999999999986522      12333444567789999999888 457778888999999998776443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=4.7e-17  Score=150.07  Aligned_cols=235  Identities=13%  Similarity=0.116  Sum_probs=157.4

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeeccCCCCCCceeeeee
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC  244 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  244 (458)
                      +..|.+||.+.....   ....+...+....|+ ++++.|+..+.+   ..|++||+.+++........   .....++|
T Consensus       183 ~~~i~i~d~dg~~~~---~lt~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFNQF---IVNRSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCCce---EeccCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeE
Confidence            468999998765532   223455678999999 567767766543   36999999887643322211   22346899


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccce--eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEe
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFA--SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFD  321 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d  321 (458)
                      +|+++.++.+....            |  .|.+||+.+++... +.  .+...+....|+|||+.|+..+ .+|...+|+
T Consensus       256 SPDG~~La~~~~~~------------g~~~Iy~~d~~~~~~~~-lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~  320 (429)
T PRK01742        256 SPDGSRLAFASSKD------------GVLNIYVMGANGGTPSQ-LT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR  320 (429)
T ss_pred             CCCCCEEEEEEecC------------CcEEEEEEECCCCCeEe-ec--cCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence            99999888765322            2  45566777665433 32  3445678899999999877655 567788887


Q ss_pred             CCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          322 MSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       322 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +... .....+ .+..  ....|+|+|++|+..+.++ +.+||+.++.......   .        .....+.|+|||++
T Consensus       321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~--------~~~~~~~~sPdG~~  385 (429)
T PRK01742        321 MSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---T--------FLDESPSISPNGIM  385 (429)
T ss_pred             EECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---C--------CCCCCceECCCCCE
Confidence            6532 222222 3333  4578999999998887765 5569998764322110   0        01245789999999


Q ss_pred             EEEEeCCccEEEEEcc--CCCcccccCCCCCcEEEEEECCC
Q 012699          401 LLVTSGSVRAPIYQVR--GHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       401 l~~~~~~~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      |+.++.++...+|.+.  .+.....+..|.+.+..++|+|-
T Consensus       386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            9999998888877753  34445556678888999999985

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=2.5e-18  Score=146.28  Aligned_cols=265  Identities=14%  Similarity=0.186  Sum_probs=204.1

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      .-+.+.++.+|++|+.|+.-|.+..+|+.+.....   .+.-...|.++.|. .+.++++++-. ..+.+||-. |..++
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~v~Etv~Dv~~L-Hneq~~AVAQK-~y~yvYD~~-GtElH  204 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EINVMETVRDVTFL-HNEQFFAVAQK-KYVYVYDNN-GTELH  204 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeee---eeehhhhhhhhhhh-cchHHHHhhhh-ceEEEecCC-CcEEe
Confidence            34578999999999999999999999999887654   33345678889998 67777777654 589999954 55556


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                      .++.+   ..|..+.|.|..-+|++++..             |.++--|+.+|+.+..+..  ..+.+..++-+|-+..+
T Consensus       205 Clk~~---~~v~rLeFLPyHfLL~~~~~~-------------G~L~Y~DVS~GklVa~~~t--~~G~~~vm~qNP~NaVi  266 (545)
T KOG1272|consen  205 CLKRH---IRVARLEFLPYHFLLVAASEA-------------GFLKYQDVSTGKLVASIRT--GAGRTDVMKQNPYNAVI  266 (545)
T ss_pred             ehhhc---CchhhhcccchhheeeecccC-------------CceEEEeechhhhhHHHHc--cCCccchhhcCCccceE
Confidence            56655   578999999999888888877             6999999999999888753  33568888999988899


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699          309 AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       309 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      -+|...|+|.+|.....+++..+..|.++|.+|++.++|.|++|.+.|..++|||+++..++.....          ...
T Consensus       267 h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------p~~  336 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----------PHP  336 (545)
T ss_pred             EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----------CCC
Confidence            9999999999999999999999999999999999999999999999999999999998765443221          233


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCC---CcccccCCC--CCcEEEEEECCCCCeEEEecCC
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGH---ASGMRTLPH--GAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~---~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      ...+++|..|  +++.+....+.||.-...   .....+..|  .++|.++.|.|-...|-.|-.-
T Consensus       337 a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~  400 (545)
T KOG1272|consen  337 ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG  400 (545)
T ss_pred             cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence            4557777655  333444455888853222   111222233  3689999999976666554433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=9.8e-19  Score=158.96  Aligned_cols=249  Identities=16%  Similarity=0.280  Sum_probs=187.1

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +.++.+.||...|+|+.|...|.++++|+.|..++||..++..+..  ....|.+.|+.++.+ .+..++++++.|..|+
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--s~rGhs~ditdlavs-~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--SCRGHSGDITDLAVS-SNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--cCCCCccccchhccc-hhhhhhhhcccCceEE
Confidence            5667788999999999999999999999999999999988887654  456788899999988 7778899999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE------------
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT------------  285 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~------------  285 (458)
                      +|.+..+.++..+..+.  +.|++++|+|-.    +.+.+             |++++||.+- .+..            
T Consensus       258 vWrl~~~~pvsvLrght--gavtaiafsP~~----sss~d-------------gt~~~wd~r~-~~~~y~prp~~~~~~~  317 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHT--GAVTAIAFSPRA----SSSDD-------------GTCRIWDARL-EPRIYVPRPLKFTEKD  317 (1113)
T ss_pred             EEecCCCchHHHHhccc--cceeeeccCccc----cCCCC-------------CceEeccccc-cccccCCCCCCccccc
Confidence            99999999998888776  789999999976    34444             6999999871 1110            


Q ss_pred             ---EeecC--------------CCCCcEEEEEEccCCCEEEE-----------EecCCeEEEEeCCCCceeeeeeCCCCC
Q 012699          286 ---VLPLG--------------EDPPAITSLCFNHNGKILAA-----------SAVDGMIHMFDMSAGLQITGWPAHDSA  337 (458)
Q Consensus       286 ---~~~~~--------------~~~~~i~~~~~~~~~~~l~~-----------~~~dg~i~v~d~~~~~~~~~~~~~~~~  337 (458)
                         .+.+.              .....+.+++|..++-.+++           +-.+-.+.+|++.++...+.+.+|...
T Consensus       318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~  397 (1113)
T KOG0644|consen  318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE  397 (1113)
T ss_pred             ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence               00000              00001222223222222222           333456788999999999999999999


Q ss_pred             eEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          338 ISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       338 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      +..+.++| +.+...+++.||...|||+-.+-......        .+ ...+..-+||+||+.++....-|.++|....
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--------~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--------IG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--------cc-cceeeccccCCCCceEecCCCCCceEEeccC
Confidence            99999999 55566789999999999998764433221        11 4456667899999999988888999988765


Q ss_pred             CC
Q 012699          417 GH  418 (458)
Q Consensus       417 ~~  418 (458)
                      ..
T Consensus       469 qs  470 (1113)
T KOG0644|consen  469 QS  470 (1113)
T ss_pred             CC
Confidence            44

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=5.7e-16  Score=126.02  Aligned_cols=242  Identities=14%  Similarity=0.184  Sum_probs=179.3

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc---eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR---VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      ..+|++.+|+ .+...++.+..+..+.||.....+   ..+++..|+  ..++.+.|.|..+.+++++.|+         
T Consensus        10 ~~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs~dr---------   77 (361)
T KOG1523|consen   10 LEPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCSHDR---------   77 (361)
T ss_pred             cCceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEccCCC---------
Confidence            4689999999 888899999999999999988776   344454444  7899999999999999999997         


Q ss_pred             ccceeEEEEEC-CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce----eeeeeCCCCCeEEEE
Q 012699          268 WGFASLTVWNM-KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ----ITGWPAHDSAISSIL  342 (458)
Q Consensus       268 ~~~g~i~i~d~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~  342 (458)
                          .-++|.. ..++-.+++.+-.+....+++.|+|.++.|++|+.-..|.||-++...-    ...-+.+...|.++.
T Consensus        78 ----nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   78 ----NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             ----CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence                8899988 5555555555556778899999999999999999999999988764321    112245678899999


Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCCe------eEEeecC---CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQGQ------VLWTRNC---SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      |+|++-+|++|+.|+..+++..--...      .-+..+.   ..........+.+..+.|+|+|..|+-.+.|..+.+-
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            999999999999999999997542110      0000000   0001112467789999999999999999999999999


Q ss_pred             EccCCCccc-ccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          414 QVRGHASGM-RTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       414 ~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      |.....+.. ......-+..++.|-.+.. ++.++.|
T Consensus       234 da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  234 DAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             ecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence            988775322 2222236777787765433 4444444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.75  E-value=2.9e-15  Score=133.47  Aligned_cols=291  Identities=13%  Similarity=0.137  Sum_probs=176.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIK  217 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~  217 (458)
                      .+..+......-..+.|+|||+++++++.||.|.++|+.+.+...   ....+.....++++ ++++++++++ ..+.+.
T Consensus        28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---~i~~G~~~~~i~~s-~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---TIKVGGNPRGIAVS-PDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---EEE-SSEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred             EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---EEecCCCcceEEEc-CCCCEEEEEecCCCcee
Confidence            444555443333457899999999999999999999999988553   44556677899999 6777777664 689999


Q ss_pred             EEEcCCCceeeeccCCC-----CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          218 AWNVDAKRVVCDLNTTD-----AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      ++|.++.+.+..+....     ..+++..+..+|..+.++..-.+.            +.|.+.|....+....-... .
T Consensus       104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~------------~~I~vVdy~d~~~~~~~~i~-~  170 (369)
T PF02239_consen  104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT------------GEIWVVDYSDPKNLKVTTIK-V  170 (369)
T ss_dssp             EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT------------TEEEEEETTTSSCEEEEEEE--
T ss_pred             EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC------------CeEEEEEeccccccceeeec-c
Confidence            99999999888776542     224677888889888777766654            58888898776544322221 2


Q ss_pred             CCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeee----CCCCCeEEEEEcCC----------CCEEEEecCCC
Q 012699          293 PPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWP----AHDSAISSILFGPD----------ETSIFSLGSDG  357 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~----------~~~l~~~~~dg  357 (458)
                      ........|+|++++++++ ..+..|-++|..+++.+..+.    .|..+...+- +|.          +...++.-...
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~  249 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTD  249 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeeccccceecccccCC
Confidence            2457789999999988765 456789999999887766553    2334444331 222          22221222222


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE----eCCccEEEEEccCCCcccccCC-CCCcEE
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT----SGSVRAPIYQVRGHASGMRTLP-HGAAIT  432 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~~~~i~i~~~~~~~~~~~~~~-h~~~v~  432 (458)
                      .+.+||..+.+.+....         .... ..-+..+|+++++.+.    ...++|.++|.++.+....+.. -...+.
T Consensus       250 ~v~v~d~~~wkvv~~I~---------~~G~-glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~  319 (369)
T PF02239_consen  250 PVSVHDDYAWKVVKTIP---------TQGG-GLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV  319 (369)
T ss_dssp             TTT-STTTBTSEEEEEE----------SSS-S--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred             ccccchhhcCeEEEEEE---------CCCC-cceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence            44556666654443322         1122 2567889999999998    3458999999998855444432 223599


Q ss_pred             EEEECCCCCeEEEec--CCCcEEEEeC
Q 012699          433 TVDWHPTLPMFLTGS--ADHSVQVMSL  457 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~--~dg~v~iw~l  457 (458)
                      .+.|+++|+.+..+.  .++.|.|||-
T Consensus       320 h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  320 HMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             ccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            999999999554433  3447999984

...

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.75  E-value=1.7e-16  Score=137.70  Aligned_cols=200  Identities=18%  Similarity=0.280  Sum_probs=140.3

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD  234 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  234 (458)
                      |++--|+.|-.-|.|.+.|....+...  ..........++++.|-|.+...++++-.+|.+.+||.....       . 
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~-  254 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------G-  254 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------c-
Confidence            455567777777888888765422111  011122347899999998888999999999999999873111       0 


Q ss_pred             CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                        ..-.+....+++..+.....-.                   ..+..++....+  ....|+..+|+|||++||+.+.|
T Consensus       255 --~t~p~~~~~k~~~~f~i~t~ks-------------------k~~rNPv~~w~~--~~g~in~f~FS~DG~~LA~VSqD  311 (636)
T KOG2394|consen  255 --ATAPSYQALKDGDQFAILTSKS-------------------KKTRNPVARWHI--GEGSINEFAFSPDGKYLATVSQD  311 (636)
T ss_pred             --CCCCcccccCCCCeeEEeeeec-------------------cccCCccceeEe--ccccccceeEcCCCceEEEEecC
Confidence              0011112223343333222110                   011123333322  23479999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      |.++|||..+.+.+..++.--+...|++|||||++|++|+.|..|.||.+...+.+.         ..++|+.+|..++|
T Consensus       312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA---------RGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA---------RGQGHKSWVSVVAF  382 (636)
T ss_pred             ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE---------eccccccceeeEee
Confidence            999999999988888777777889999999999999999999999999998764433         34579999999999


Q ss_pred             cc
Q 012699          395 DV  396 (458)
Q Consensus       395 s~  396 (458)
                      +|
T Consensus       383 Dp  384 (636)
T KOG2394|consen  383 DP  384 (636)
T ss_pred             cc
Confidence            98

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.75  E-value=2.6e-14  Score=119.06  Aligned_cols=278  Identities=13%  Similarity=0.193  Sum_probs=192.2

Q ss_pred             CCcEEEEecCCCCC-CCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCC--CceeeeccCCCCCCceee
Q 012699          168 DGTVRIWTYDSSTP-ASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDA--KRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       168 dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~--~~~~~~~~~~~~~~~v~~  241 (458)
                      +.-|.+|++++... +...........++-++|+ ++.+.|+++..   +|.|..|.++.  |+....-.......+...
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            46699999984432 2222334455778899999 67777777655   47788887775  554332222222234588


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCc----------EEEEEEccCCCEEEE
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPA----------ITSLCFNHNGKILAA  310 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~  310 (458)
                      +++++++++++++.-..            |.|.++-++. +..........|.+.          +....+.|++++|++
T Consensus        94 vsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v  161 (346)
T COG2706          94 VSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV  161 (346)
T ss_pred             EEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE
Confidence            99999999999988765            7999998865 443333222223333          788999999999988


Q ss_pred             Eec-CCeEEEEeCCCCceeeeee---CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCC-CeeEEeecCCcccCCCC
Q 012699          311 SAV-DGMIHMFDMSAGLQITGWP---AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQ-GQVLWTRNCSRFCDPES  384 (458)
Q Consensus       311 ~~~-dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~  384 (458)
                      ... --.|.+|++..++....-+   .....-+.|.|+|++++.+...+ +++|.+|..... +..........+.....
T Consensus       162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT  241 (346)
T ss_pred             eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence            754 2369999998775532211   33456789999999998887766 999999999875 34433334444444455


Q ss_pred             CCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeEEEecCC-CcEEEEeCC
Q 012699          385 SKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMFLTGSAD-HSVQVMSLS  458 (458)
Q Consensus       385 ~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~l~  458 (458)
                      ...+...+.++|||++|+++.. ...|.+|.+........+.    .+....+.+.|+|++++|+++..| ..|.+|.++
T Consensus       242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            6667888999999999998775 3678888887554333333    355568999999999998888765 468887653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=3.2e-16  Score=144.56  Aligned_cols=214  Identities=13%  Similarity=0.166  Sum_probs=147.5

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      +..|.+||.+.... ..+..+.  ..+..+.|+|+++.++..+.+.          +...|++||+.+++........++
T Consensus       183 ~~~i~i~d~dg~~~-~~lt~~~--~~v~~p~wSPDG~~la~~s~~~----------~~~~i~i~dl~tg~~~~l~~~~g~  249 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIVNRSS--QPLMSPAWSPDGSKLAYVSFEN----------KKSQLVVHDLRSGARKVVASFRGH  249 (429)
T ss_pred             eEEEEEECCCCCCc-eEeccCC--CccccceEcCCCCEEEEEEecC----------CCcEEEEEeCCCCceEEEecCCCc
Confidence            46899999876553 3333332  5689999999999998876532          113799999988765444333333


Q ss_pred             CCcEEEEEEccCCCEEEEEe-cCCeEE--EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCC
Q 012699          293 PPAITSLCFNHNGKILAASA-VDGMIH--MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQG  368 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~-~dg~i~--v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  368 (458)
                         ...++|+|||+.|+.+. .+|.+.  +||+.+++ ...+..+...+....|+|||+.|+..+ .++...+|++....
T Consensus       250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence               34689999999888764 577655  45666554 455666777788999999999877555 57888899876432


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      .....     .    .+..  ....|+|||++|++++.++ +.+||+.++........+  ...+++|+|+|++|++++.
T Consensus       326 ~~~~~-----l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        326 GGASL-----V----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCeEE-----e----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEc
Confidence            21111     0    1111  3468999999999887754 667999876432211122  2356889999999999999


Q ss_pred             CCcEEEEeC
Q 012699          449 DHSVQVMSL  457 (458)
Q Consensus       449 dg~v~iw~l  457 (458)
                      +|.+.+|.+
T Consensus       392 ~g~~~~l~~  400 (429)
T PRK01742        392 QGLGKVLQL  400 (429)
T ss_pred             CCCceEEEE
Confidence            998888864

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.74  E-value=3.9e-14  Score=126.77  Aligned_cols=277  Identities=14%  Similarity=0.241  Sum_probs=174.0

Q ss_pred             CcEEEEecCCCCC-CCccccccCCCceEEEEEecCCCeEEEEEcC----CCcEEEEEcCCC--ceeeeccCCCCCCceee
Q 012699          169 GTVRIWTYDSSTP-ASRNATIYCGTEIMSLEWECKSDRLLLIGTA----DGGIKAWNVDAK--RVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       169 g~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~--~~~~~~~~~~~~~~v~~  241 (458)
                      +.|.+|+++.... +..............++++ +++++|++...    +|.|..|++...  ++...-...........
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            6788888833222 1111223344556778888 56677777765    579999998764  33221111112245678


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEE---eec--------CCCCCcEEEEEEccCCCEEE
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTV---LPL--------GEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~---~~~--------~~~~~~i~~~~~~~~~~~l~  309 (458)
                      ++++|+++.++++....            |.+.++++.. +.....   +..        ........++.++|++++++
T Consensus        92 i~~~~~g~~l~vany~~------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~  159 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGG------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY  159 (345)
T ss_dssp             EEECTTSSEEEEEETTT------------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred             EEEecCCCEEEEEEccC------------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence            99999999999887654            7999999987 333322   211        11224578999999999988


Q ss_pred             EEec-CCeEEEEeCCCCc--e--eeeee-CCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccC-CCeeEEeecCCcccC
Q 012699          310 ASAV-DGMIHMFDMSAGL--Q--ITGWP-AHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQN-QGQVLWTRNCSRFCD  381 (458)
Q Consensus       310 ~~~~-dg~i~v~d~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~  381 (458)
                      +... ...|++|++....  .  ...+. ......+.++|+|++++++... .++.|.++++.. ...............
T Consensus       160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence            8654 3479999987654  2  12222 3445678999999999876654 488899999982 223222222222212


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeEEEec-CCCcEEEE
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMFLTGS-ADHSVQVM  455 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw  455 (458)
                      ..........++++|||++|+++.. .+.|.+|+++.........    ......+.++++|+|++|+++. .++.|.+|
T Consensus       240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf  319 (345)
T PF10282_consen  240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF  319 (345)
T ss_dssp             TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence            1222236888999999999998775 5789999995332111111    2234589999999999888765 66789999


Q ss_pred             eCC
Q 012699          456 SLS  458 (458)
Q Consensus       456 ~l~  458 (458)
                      +++
T Consensus       320 ~~d  322 (345)
T PF10282_consen  320 DID  322 (345)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3e-15  Score=131.18  Aligned_cols=278  Identities=12%  Similarity=0.154  Sum_probs=194.9

Q ss_pred             cCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699          145 GHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA  223 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~  223 (458)
                      +|...-+.|..+|||+|+ |||..--.|++||+........   ......+..+..-..+-..++.-..|.+|-+-..- 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE---RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE---RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee---ecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence            577888899999999995 6777788999999987654321   11223333332221444555556667776654321 


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      |. ...+..+   ....+++++.-.. +++.++..              .|+-++++.|+.+..+....  +.++++..+
T Consensus       125 G~-hy~~RIP---~~GRDm~y~~~scDly~~gsg~--------------evYRlNLEqGrfL~P~~~~~--~~lN~v~in  184 (703)
T KOG2321|consen  125 GR-HYRTRIP---KFGRDMKYHKPSCDLYLVGSGS--------------EVYRLNLEQGRFLNPFETDS--GELNVVSIN  184 (703)
T ss_pred             Ce-eeeeecC---cCCccccccCCCccEEEeecCc--------------ceEEEEcccccccccccccc--ccceeeeec
Confidence            21 1112222   2345666665444 44444443              89999999999988876443  679999999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCceeeeee------CCCC-----CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQITGWP------AHDS-----AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      +...+|++|+.+|.|..||.++...+.++.      .|.+     .|+++.|+.+|-.+++|+.+|.+.|||++...+.+
T Consensus       185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~  264 (703)
T KOG2321|consen  185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL  264 (703)
T ss_pred             CccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence            999999999999999999999876655543      2333     49999999999999999999999999999876554


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                      ..        ......+|..+.|-+.+ +--++......++|||-.+++....... ...++.+|+-|++.++.++-+++
T Consensus       265 ~k--------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~  335 (703)
T KOG2321|consen  265 VK--------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESS  335 (703)
T ss_pred             ec--------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCC
Confidence            32        22344567888887753 3333445557799999999876655544 34599999999999999998887


Q ss_pred             cEEEE
Q 012699          451 SVQVM  455 (458)
Q Consensus       451 ~v~iw  455 (458)
                      .+..|
T Consensus       336 ~m~~y  340 (703)
T KOG2321|consen  336 KMHTY  340 (703)
T ss_pred             cceeE
Confidence            76655

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.73  E-value=2.3e-15  Score=123.71  Aligned_cols=360  Identities=13%  Similarity=0.133  Sum_probs=211.8

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccc-----c-------------------ccceeeeeccCCceeeee
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEAC-----A-------------------TTATHMGSAEMGQTWASS   78 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~   78 (458)
                      ..+-|.++.| ..+|.+||+|..+|.+-++..+....     .                   +.+..+.|.++       
T Consensus        24 eadiis~vef-~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-------   95 (433)
T KOG1354|consen   24 EADIISAVEF-DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-------   95 (433)
T ss_pred             hhcceeeEEe-ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-------
Confidence            3455999999 99999999999999988875432211     0                   22234555555       


Q ss_pred             CCccceeEeeccCCCcccccccccccCCcccceeeecc-CCCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeC
Q 012699           79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFND-GLYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFS  156 (458)
Q Consensus        79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~  156 (458)
                        +....+.....|.++++|++.....+.......... ...-+.-+.......+..+...+.+.+ .+|+--|++++++
T Consensus        96 --~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N  173 (433)
T KOG1354|consen   96 --GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN  173 (433)
T ss_pred             --CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence              233344455679999999998766443221111111 111111111122222333333455555 3699999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCcccccc-C-----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPASRNATIY-C-----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      .|++.++++. |=.|.+|+++-........... +     ..-|++..|+|...+.++-.+..|+|++-|++...+.-..
T Consensus       174 sD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  174 SDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             CccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence            9999998864 6789999986443322111111 1     2347888999888888999999999999999854321110


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (458)
                      .      .....--.|...-+                                     +.+--..|..+.|+++|+|+++
T Consensus       253 s------KlfEepedp~~rsf-------------------------------------fseiIsSISDvKFs~sGryils  289 (433)
T KOG1354|consen  253 S------KLFEEPEDPSSRSF-------------------------------------FSEIISSISDVKFSHSGRYILS  289 (433)
T ss_pred             h------hhhccccCCcchhh-------------------------------------HHHHhhhhhceEEccCCcEEEE
Confidence            0      00000000111100                                     1122245888999999999998


Q ss_pred             EecCCeEEEEeC-CCCceeeeeeCCCC------------C---eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          311 SAVDGMIHMFDM-SAGLQITGWPAHDS------------A---ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       311 ~~~dg~i~v~d~-~~~~~~~~~~~~~~------------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      -.. -+|++||+ ...+++.+++.|..            .   -..++|+.++.+++||+....++++++..+.......
T Consensus       290 RDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl  368 (433)
T KOG1354|consen  290 RDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTL  368 (433)
T ss_pred             ecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecc
Confidence            543 58999999 44677777776642            2   2457899999999999999999999977654433322


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      .+.+....   ...+.      .-+.+.+++......++-        .-......+...+|+|..+.+|.+..+ .++|
T Consensus       369 ~asr~~~~---~~~~~------k~~~V~~~g~r~~~~~~v--------d~ldf~kkilh~aWhp~en~ia~aatn-nlyi  430 (433)
T KOG1354|consen  369 EASRKNMK---PRKVL------KLRLVSSSGKRKRDEISV--------DALDFRKKILHTAWHPKENSIAVAATN-NLYI  430 (433)
T ss_pred             cccccCCc---ccccc------cceeeecCCCcccccccc--------chhhhhhHHHhhccCCccceeeeeecC-ceEE
Confidence            22221110   00000      112222233322211110        111223456778999999988877755 4665


Q ss_pred             E
Q 012699          455 M  455 (458)
Q Consensus       455 w  455 (458)
                      |
T Consensus       431 f  431 (433)
T KOG1354|consen  431 F  431 (433)
T ss_pred             e
Confidence            5

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=9.7e-15  Score=134.37  Aligned_cols=238  Identities=15%  Similarity=0.126  Sum_probs=158.4

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc---CCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT---ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      ..|.+||.+......   .......+...+|+ ++++.|+..+   .+..|.+|++.+++........   .....+.|+
T Consensus       179 ~~l~~~d~dg~~~~~---lt~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~S  251 (429)
T PRK03629        179 YELRVSDYDGYNQFV---VHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFS  251 (429)
T ss_pred             eeEEEEcCCCCCCEE---eecCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEEC
Confidence            368888887665432   23345678999999 5666666543   2357999999888654332222   234568999


Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeC
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDM  322 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~  322 (458)
                      |+++.++......          +...|.+||+.+++.....   .+...+....|+|+|+.|+..+.+ +  .|+++|+
T Consensus       252 PDG~~La~~~~~~----------g~~~I~~~d~~tg~~~~lt---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        252 PDGSKLAFALSKT----------GSLNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CCCCEEEEEEcCC----------CCcEEEEEECCCCCEEEcc---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            9999888654321          0126999999887665433   233457789999999988777654 3  4566677


Q ss_pred             CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699          323 SAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      .+++. ..+..+........|+|||++|+..+.+   ..|.+||+.++......       .    ........|+|||+
T Consensus       319 ~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-------~----~~~~~~p~~SpDG~  386 (429)
T PRK03629        319 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-------D----TFLDETPSIAPNGT  386 (429)
T ss_pred             CCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-------C----CCCCCCceECCCCC
Confidence            66544 3444444556678999999998876543   35888998765432111       0    01123578999999


Q ss_pred             EEEEEeCCcc---EEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          400 RLLVTSGSVR---APIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       400 ~l~~~~~~~~---i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      +|+.++.++.   ++++++++. ....+.+|.+.+...+|+|-
T Consensus       387 ~i~~~s~~~~~~~l~~~~~~G~-~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        387 MVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEEEEcCCCceEEEEEECCCC-CeEECccCCCCcCCcccCCC
Confidence            9999887753   677787554 34555678888999999983

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=1e-14  Score=130.02  Aligned_cols=322  Identities=12%  Similarity=0.069  Sum_probs=198.7

Q ss_pred             eeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCC
Q 012699           39 TLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGL  118 (458)
Q Consensus        39 ~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  118 (458)
                      ++++-..++++.+.|..+.+....+.....    ....+.++++++++.+.+.|+.+.++|+....              
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--------------   69 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--------------   69 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--------------
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcCCCeEEEEECCccc--------------
Confidence            456777889999999988876655543211    12235677888888888999999999987644              


Q ss_pred             CCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEecCCCCCCCcccccc-----CCC
Q 012699          119 YTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIY-----CGT  192 (458)
Q Consensus       119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~~  192 (458)
                                          .+++++.-. ...++++++||++++++. .++.+.++|.++.+.+.......     ...
T Consensus        70 --------------------~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~  128 (369)
T PF02239_consen   70 --------------------VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPES  128 (369)
T ss_dssp             --------------------EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS--
T ss_pred             --------------------EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCC
Confidence                                333443322 356899999999988764 68999999998887654332221     234


Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      .+..+..+|....++++--..+.|.+.|....+...  .+...   ....+..|+|++++++.+....            
T Consensus       129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~s------------  193 (369)
T PF02239_consen  129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGS------------  193 (369)
T ss_dssp             -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGG------------
T ss_pred             CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc---ccccccccCcccceeeeccccc------------
Confidence            577777775555566666667889888877654332  22222   4578899999999887765443            


Q ss_pred             eeEEEEECCCCceeEEeecC--CCCCcEEEEEEccC----------CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCe
Q 012699          271 ASLTVWNMKTWKAMTVLPLG--EDPPAITSLCFNHN----------GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAI  338 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v  338 (458)
                      ..|.++|.++++....+...  .|+.+...+ .+|.          +...++.-....+.+||..+.+.++++.....+ 
T Consensus       194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-  271 (369)
T PF02239_consen  194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-  271 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-
T ss_pred             ceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-
Confidence            49999999998877665432  222233322 2222          222222222345667898999999999887777 


Q ss_pred             EEEEEcCCCCEEEEe----cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--ccEEE
Q 012699          339 SSILFGPDETSIFSL----GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--VRAPI  412 (458)
Q Consensus       339 ~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~i~i  412 (458)
                      .-+..+|+++++++.    ...+.|.++|.++.+.......        .....+..+.|+++|+.+.++..+  +.|.+
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--------~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v  343 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--------GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV  343 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--------HHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--------cCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence            788889999999988    4468899999998744332110        111237889999999988776654  37999


Q ss_pred             EEccCCCccccc
Q 012699          413 YQVRGHASGMRT  424 (458)
Q Consensus       413 ~~~~~~~~~~~~  424 (458)
                      ||..+.+...++
T Consensus       344 ~D~~Tl~~~~~i  355 (369)
T PF02239_consen  344 YDAKTLKEKKRI  355 (369)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EECCCcEEEEEE
Confidence            999998665443

...

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=1.3e-14  Score=118.08  Aligned_cols=241  Identities=12%  Similarity=0.169  Sum_probs=161.4

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE-eecccCCCCcceeeccce
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS-AAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  271 (458)
                      ...+++|+ .+..-+++|..+| .++|+.+--+...........-.+..+-|  ..++++. |+..++       -....
T Consensus         7 ~~lsvs~N-QD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~p-------ky~pN   75 (346)
T KOG2111|consen    7 KTLSVSFN-QDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRP-------KYPPN   75 (346)
T ss_pred             ceeEEEEc-cCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCC-------CCCCc
Confidence            34568998 7777788887766 89999875333222222111111222222  2233333 332211       11125


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC-CCceeeeeeCCC--CCeEEEEEcCCCC
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS-AGLQITGWPAHD--SAISSILFGPDET  348 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~--~~v~~~~~~~~~~  348 (458)
                      .+.|||-...+++.++.+.   .+|.++.++++  .|++. ..+.|+||... +.+.++.+..-.  ..+.+++-..+..
T Consensus        76 kviIWDD~k~~~i~el~f~---~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~  149 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELSFN---SEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS  149 (346)
T ss_pred             eEEEEecccCcEEEEEEec---cceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence            8999997777777777654   56999999876  45554 36789999987 455555554322  2243333333444


Q ss_pred             EEEEec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCcc-EEEEEccCCCcccccC-
Q 012699          349 SIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVR-APIYQVRGHASGMRTL-  425 (458)
Q Consensus       349 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~-i~i~~~~~~~~~~~~~-  425 (458)
                      +||.=+ .-|.|+|-|+......       .......|...|.+++++.+|..+|+++..|+ |+|||..++..+..+. 
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            555433 3789999999865331       12233578999999999999999999999986 8999999998776665 


Q ss_pred             -CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          426 -PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       426 -~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                       .....|.+++|||++.+||++|+.|+|.|+.+
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence             24568999999999999999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=6.9e-15  Score=122.98  Aligned_cols=210  Identities=13%  Similarity=0.218  Sum_probs=164.0

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCC--CcEEE
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTAD--GGIKA  218 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~  218 (458)
                      ....-+++|..++.. |+ .|++|-.+|.+.+|..+.+.... .......+..+..+.-++.....+++|+..  ..+.+
T Consensus       100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence            444566778777765 33 68888889999999987544211 112334456677777776777888889998  89999


Q ss_pred             EEcCCCceeeeccCCCCC-------CceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEee
Q 012699          219 WNVDAKRVVCDLNTTDAF-------PSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLP  288 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~  288 (458)
                      ||++..+.+.+-+.....       -.++++.|.+.  ...|+++...             +.+++||.+.+ +++..+.
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-------------hqvR~YDt~~qRRPV~~fd  244 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY-------------HQVRLYDTRHQRRPVAQFD  244 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc-------------eeEEEecCcccCcceeEec
Confidence            999988766554433211       13567888887  7788888877             59999999864 3556665


Q ss_pred             cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          289 LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      +.  ..+++++...|.++++++|..-|.+..||++.++.... +.+-.+.|+++..+|..+++++++-|..+||+|+.+.
T Consensus       245 ~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  245 FL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            54  45699999999999999999999999999999988776 8888999999999999999999999999999999985


Q ss_pred             C
Q 012699          368 G  368 (458)
Q Consensus       368 ~  368 (458)
                      +
T Consensus       323 k  323 (412)
T KOG3881|consen  323 K  323 (412)
T ss_pred             h
Confidence            3

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=3.6e-15  Score=123.40  Aligned_cols=232  Identities=16%  Similarity=0.243  Sum_probs=160.2

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      ...+..++|+ +.-..++++..|-.|++||-.. +....++.... ..|.+++|-|.+..-++.+..             
T Consensus        98 ~~dlr~~aWh-qH~~~fava~nddvVriy~kss-t~pt~Lks~sQ-rnvtclawRPlsaselavgCr-------------  161 (445)
T KOG2139|consen   98 EIDLRGVAWH-QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ-RNVTCLAWRPLSASELAVGCR-------------  161 (445)
T ss_pred             hcceeeEeec-hhhhhhhhhccCcEEEEeccCC-CCCceecchhh-cceeEEEeccCCcceeeeeec-------------
Confidence            3457889999 4566788899999999999877 44444443322 579999999987644443333             


Q ss_pred             eeEEEEECCCC------------ceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCceeeeeeCCCCC
Q 012699          271 ASLTVWNMKTW------------KAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQITGWPAHDSA  337 (458)
Q Consensus       271 g~i~i~d~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~  337 (458)
                      +.|.+|.....            .....++..+| .+|+++.|++||..+++++. |..|.|||..++..+.-.....+.
T Consensus       162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg  240 (445)
T KOG2139|consen  162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG  240 (445)
T ss_pred             ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence            38999976421            12233444455 68999999999999998876 578999999998766555455677


Q ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEcc
Q 012699          338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVR  416 (458)
Q Consensus       338 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~  416 (458)
                      +.-+.||||+.+|++++-|+..++|+........      +.   .-..+.+...+|+|+|++|+.+.. .-.++-....
T Consensus       241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e------rw---~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE------RW---ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             eeeEEEcCCCCEEEEecccceeeeehhcccceec------ce---eccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            8999999999999999999999999665432110      11   112337899999999998776554 3333333222


Q ss_pred             CCCcccc-------------cC------C---CCCcEEEEEECCCCCeEEEecC
Q 012699          417 GHASGMR-------------TL------P---HGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       417 ~~~~~~~-------------~~------~---h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      +......             +.      +   -.+++.+++|.|.|.+||+.-.
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            2111100             00      1   2467899999999999998644

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.70  E-value=1.3e-16  Score=136.04  Aligned_cols=230  Identities=17%  Similarity=0.223  Sum_probs=189.4

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      ..+.+.++ .++..++.|+.-|.+..+|..++++...+...   ..|.++.|..+.++++++-..              .
T Consensus       131 GPY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LHneq~~AVAQK~--------------y  192 (545)
T KOG1272|consen  131 GPYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLHNEQFFAVAQKK--------------Y  192 (545)
T ss_pred             CCeeeeec-CCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhcchHHHHhhhhc--------------e
Confidence            35678888 89999999999999999999999999888776   479999999999999988775              8


Q ss_pred             EEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE
Q 012699          273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS  352 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  352 (458)
                      +.+||-.. ..+..+.  .+ ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+
T Consensus       193 ~yvYD~~G-tElHClk--~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~  268 (545)
T KOG1272|consen  193 VYVYDNNG-TELHCLK--RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL  268 (545)
T ss_pred             EEEecCCC-cEEeehh--hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE
Confidence            99999654 4444443  22 56899999999888999999999999999999999999888899999999998888999


Q ss_pred             ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699          353 LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       353 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                      |...|+|.+|.-.....+.         ....|.++|.++++.++|+|+++++.|..++|||++.-..+..... ..+..
T Consensus       269 GhsnGtVSlWSP~skePLv---------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~  338 (545)
T KOG1272|consen  269 GHSNGTVSLWSPNSKEPLV---------KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPAS  338 (545)
T ss_pred             cCCCceEEecCCCCcchHH---------HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcc
Confidence            9999999999987654332         2235778899999999999999999999999999998765554443 45677


Q ss_pred             EEEECCCCCeEEEecCCCcEEEEe
Q 012699          433 TVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      .+++|..|. || +|.-..|.||.
T Consensus       339 ~ls~Sqkgl-LA-~~~G~~v~iw~  360 (545)
T KOG1272|consen  339 NLSLSQKGL-LA-LSYGDHVQIWK  360 (545)
T ss_pred             ccccccccc-ee-eecCCeeeeeh
Confidence            888987763 44 33444788884

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.2e-14  Score=130.93  Aligned_cols=214  Identities=12%  Similarity=0.111  Sum_probs=142.1

Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .|.++|.+......... ..  ..+....|+|+|+.++..+...          +...+.+|++.+++........+   
T Consensus       180 ~l~~~d~dg~~~~~lt~-~~--~~~~~p~wSPDG~~la~~s~~~----------g~~~i~i~dl~~G~~~~l~~~~~---  243 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHR-SP--QPLMSPAWSPDGSKLAYVTFES----------GRSALVIQTLANGAVRQVASFPR---  243 (429)
T ss_pred             eEEEEcCCCCCCEEeec-CC--CceeeeEEcCCCCEEEEEEecC----------CCcEEEEEECCCCCeEEccCCCC---
Confidence            68899887655433222 22  4688999999999988765321          11489999998877655443333   


Q ss_pred             cEEEEEEccCCCEEEEE-ecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-CeEEEE--eccCCC
Q 012699          295 AITSLCFNHNGKILAAS-AVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-GKIIEW--SLQNQG  368 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~~~  368 (458)
                      ....++|+|||+.|+.. +.+|  .|++||+.+++.. .+..+...+....|+|||+.|+..+.+ +...+|  |+.++.
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            34568999999988765 3344  5999999887654 344445567889999999988776653 444555  555432


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      ... .      .   ..........|+|||++|+..+.+   ..|++||+.++... .+.. ........|+|||++|+.
T Consensus       323 ~~~-l------t---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        323 PQR-I------T---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY  390 (429)
T ss_pred             eEE-e------e---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence            211 1      0   112234568899999999887654   35888998776422 2221 123456889999999998


Q ss_pred             ecCCCc---EEEEeC
Q 012699          446 GSADHS---VQVMSL  457 (458)
Q Consensus       446 ~~~dg~---v~iw~l  457 (458)
                      ++.++.   +.++++
T Consensus       391 ~s~~~~~~~l~~~~~  405 (429)
T PRK03629        391 SSSQGMGSVLNLVST  405 (429)
T ss_pred             EEcCCCceEEEEEEC
Confidence            887764   566665

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.68  E-value=2.7e-14  Score=117.51  Aligned_cols=249  Identities=15%  Similarity=0.270  Sum_probs=175.7

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      .+++.++||.+.|+....-|..+-+++.+.|.++|||--..............+.++.++.+. .....|+.|-.+|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-SESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-ccceEEEEEEecceEE
Confidence            467788999999999999998888999999999999954332222222233345778999998 7788899999999998


Q ss_pred             EEEcCCC----ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE-CCCCceeEEeecCCC
Q 012699          218 AWNVDAK----RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN-MKTWKAMTVLPLGED  292 (458)
Q Consensus       218 ~wd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d-~~~~~~~~~~~~~~~  292 (458)
                      -+.+...    ...+...  .+..++..+.|+....++++.+.|.              -..|. .+.+..+..+.+...
T Consensus        94 efs~sedfnkm~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk--------------~~~~hc~e~~~~lg~Y~~~~~  157 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDK--------------QFAWHCTESGNRLGGYNFETP  157 (404)
T ss_pred             EEEhhhhhhhcchhhhhh--hhhcceeeEEecCCceeEEEecccc--------------ceEEEeeccCCcccceEeecc
Confidence            8876532    2222222  3347899999999999999998884              23332 223222222211111


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeC--CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDM--SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                         .+++.+.-.  +.+.|...|.|..-.+  ..-.++.++.+|.+++.+++|.|....|++|..|..+.+||+.-....
T Consensus       158 ---~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  158 ---ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             ---CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence               111111111  5566666676665554  345678889999999999999999999999999999999999854332


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .        .....+...|..+..-+--+.|.+++.||.|.+|+++
T Consensus       233 ~--------~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  233 A--------YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             e--------eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            2        2234567778888888888899999999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=5.1e-15  Score=128.70  Aligned_cols=251  Identities=15%  Similarity=0.186  Sum_probs=163.2

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc--cccccCCCceEEEEEec----CCCeEEEEEcCCCcEEEEEcCC
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR--NATIYCGTEIMSLEWEC----KSDRLLLIGTADGGIKAWNVDA  223 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~  223 (458)
                      +....++-.|.+|+..- ...+.+|+...+.....  ...........+-+|+.    +.+--++.|-..|.+.+.|...
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            33444455566665532 34688888875332211  11222233344444531    3455677888889999998776


Q ss_pred             Cceeeecc--CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          224 KRVVCDLN--TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       224 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      .+....+.  .......++++.|-|.+..++......            |.+.+||...       .. +.  .-.+...
T Consensus       205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s------------Gnlyly~~~~-------~~-~~--t~p~~~~  262 (636)
T KOG2394|consen  205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHAS------------GNLYLYDKEI-------VC-GA--TAPSYQA  262 (636)
T ss_pred             hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEec------------CceEEeeccc-------cc-cC--CCCcccc
Confidence            33222221  122236799999999877555444332            6889988621       00 00  0111222


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      .+++..+.....-+      ..+..++..+....+.|+..+|+|||++||+.+.||.++|||..+....-.         
T Consensus       263 ~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---------  327 (636)
T KOG2394|consen  263 LKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV---------  327 (636)
T ss_pred             cCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---------
Confidence            34565565543211      122356666766677999999999999999999999999999987532211         


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP  438 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~  438 (458)
                      ....-+...+++|||||+||++|++|..|.||.+...+.+.+-.+|+..|+.++|.|
T Consensus       328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            112334579999999999999999999999999999988888889999999999983

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.9e-14  Score=131.10  Aligned_cols=236  Identities=13%  Similarity=0.109  Sum_probs=153.7

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      .+|.+||.......   ....+...+...+|+ ++++.|+..+.   +..|.+||+.+++........   .....+.|+
T Consensus       184 ~~l~i~D~~g~~~~---~lt~~~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~---g~~~~~~~S  256 (433)
T PRK04922        184 YALQVADSDGYNPQ---TILRSAEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR---GINGAPSFS  256 (433)
T ss_pred             EEEEEECCCCCCce---EeecCCCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC---CCccCceEC
Confidence            46889998655432   123455678899999 56666666653   346999999888754332221   234578999


Q ss_pred             CCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEe
Q 012699          246 PVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFD  321 (458)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d  321 (458)
                      |+++.++... .++           ...|.+||+.+++.....   .+.......+|+|+|++|+..+. +|  .|+++|
T Consensus       257 pDG~~l~~~~s~~g-----------~~~Iy~~d~~~g~~~~lt---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d  322 (433)
T PRK04922        257 PDGRRLALTLSRDG-----------NPEIYVMDLGSRQLTRLT---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA  322 (433)
T ss_pred             CCCCEEEEEEeCCC-----------CceEEEEECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            9999776543 321           137999999987754422   33334567899999998887764 34  477778


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG  398 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  398 (458)
                      +.+++.. .+..+.......+|+|+|++|+..+.++   .|.+||+.++.... .      .    .........|+|||
T Consensus       323 l~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-L------t----~~~~~~~p~~spdG  390 (433)
T PRK04922        323 ASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-L------T----PGSLDESPSFAPNG  390 (433)
T ss_pred             CCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-C------C----CCCCCCCceECCCC
Confidence            7766543 3333334455789999999988765433   59999997654321 1      0    11123356899999


Q ss_pred             CEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699          399 RRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHP  438 (458)
Q Consensus       399 ~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~  438 (458)
                      ++|+..+.+   ..++++++.+. ....+..+.+.+..++|+|
T Consensus       391 ~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        391 SMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence            998877753   45788888654 3333444556778888887

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=4.6e-14  Score=118.16  Aligned_cols=268  Identities=14%  Similarity=0.173  Sum_probs=191.2

Q ss_pred             CCCCeEEEEeCCCCC--EEEEEeCCCcEEEEecCCCCCCCcc----ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          146 HTSPISCCRFSSSGN--NIASASVDGTVRIWTYDSSTPASRN----ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       146 h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      -...|..++|.-+++  .|..++.|..+..+.+.........    .......+|..+...   +..|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence            345678888876554  4555557777877777665544322    222234566666653   4568888999999999


Q ss_pred             EcCCCce----eeeccCCCCCCceeeeeecCCCCeEEE-eecccCCCCcceeeccceeEEEEECCCCceeEEeecCC---
Q 012699          220 NVDAKRV----VCDLNTTDAFPSVLDLKCSPVEPIFVS-AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE---  291 (458)
Q Consensus       220 d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~---  291 (458)
                      ..+.+..    +..+...   ..+..+.-++..+.+++ |+..+.           ..+.+||+...+.+..-+...   
T Consensus       131 ~~k~~d~hss~l~~la~g---~g~~~~r~~~~~p~Iva~GGke~~-----------n~lkiwdle~~~qiw~aKNvpnD~  196 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATG---PGLYDVRQTDTDPYIVATGGKENI-----------NELKIWDLEQSKQIWSAKNVPNDR  196 (412)
T ss_pred             eccCCccccccceeeecC---CceeeeccCCCCCceEecCchhcc-----------cceeeeecccceeeeeccCCCCcc
Confidence            9885442    1222222   35666766776666555 555421           389999999875544332111   


Q ss_pred             ----CCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          292 ----DPPAITSLCFNHN--GKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       292 ----~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                          -+-.++.+.|-+.  ...|++++.-+.+++||.+. .+++..+..-+.+++++...|++++++++..-+.+..||+
T Consensus       197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~  276 (412)
T KOG3881|consen  197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL  276 (412)
T ss_pred             ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence                1235788889887  78999999999999999987 4678888888999999999999999999999999999999


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      +.+.....        ...+..+.+.++..+|.+++|++++-|..++|+|+.+.+.+...+ -...++++-+.++
T Consensus       277 r~~kl~g~--------~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  277 RGGKLLGC--------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cCceeecc--------ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            98654321        233567789999999999999999999999999999965554433 2345666666554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.2e-13  Score=128.02  Aligned_cols=237  Identities=11%  Similarity=0.106  Sum_probs=155.1

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      ..|.++|.++....   ....+...+...+|+ ++++.|+..+.   +..|.+||+.+++.... ....  ..+....|+
T Consensus       182 ~~l~~~d~dg~~~~---~lt~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~--g~~~~~~~S  254 (435)
T PRK05137        182 KRLAIMDQDGANVR---YLTDGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFP--GMTFAPRFS  254 (435)
T ss_pred             eEEEEECCCCCCcE---EEecCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCC--CcccCcEEC
Confidence            36888887655432   223456689999999 56666666543   46899999998875432 2222  356788999


Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeC
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDM  322 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~  322 (458)
                      |+++.++......          +...|.+||+.+++... +  ..+........|+|||+.|+..+. +|  .|+++|+
T Consensus       255 PDG~~la~~~~~~----------g~~~Iy~~d~~~~~~~~-L--t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        255 PDGRKVVMSLSQG----------GNTDIYTMDLRSGTTTR-L--TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCCCEEEEEEecC----------CCceEEEEECCCCceEE-c--cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            9999876543321          01368888998876544 2  234445677899999998887664 33  6888898


Q ss_pred             CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699          323 SAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      ..++. ..+..+...+....|+|+|++|+..+.+   ..|.+||+........       .    ....+....|+|||+
T Consensus       322 ~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l-------t----~~~~~~~p~~spDG~  389 (435)
T PRK05137        322 DGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL-------T----SGFLVEGPTWAPNGR  389 (435)
T ss_pred             CCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec-------c----CCCCCCCCeECCCCC
Confidence            76544 3444445567778999999999876543   3588888754432111       0    112356689999999


Q ss_pred             EEEEEeCC------ccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          400 RLLVTSGS------VRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       400 ~l~~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      .|+..+.+      ..++++++.+... ..+ .....+...+|+|-
T Consensus       390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l-~~~~~~~~p~Wsp~  433 (435)
T PRK05137        390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REV-PTPGDASDPAWSPL  433 (435)
T ss_pred             EEEEEEccCCCCCcceEEEEECCCCce-EEc-cCCCCccCcccCCC
Confidence            98876543      2578888876543 222 23445777888874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.1e-14  Score=128.82  Aligned_cols=215  Identities=15%  Similarity=0.166  Sum_probs=143.4

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      ..|.++|.+..... .+..+.  ..+....|+|+++.++..+...          +...|.+||+.+++.....   ...
T Consensus       182 ~~l~~~d~dg~~~~-~lt~~~--~~v~~p~wSpDG~~lay~s~~~----------g~~~i~~~dl~~g~~~~l~---~~~  245 (435)
T PRK05137        182 KRLAIMDQDGANVR-YLTDGS--SLVLTPRFSPNRQEITYMSYAN----------GRPRVYLLDLETGQRELVG---NFP  245 (435)
T ss_pred             eEEEEECCCCCCcE-EEecCC--CCeEeeEECCCCCEEEEEEecC----------CCCEEEEEECCCCcEEEee---cCC
Confidence            37888888655433 333322  5789999999999888876432          1148999999987764432   334


Q ss_pred             CcEEEEEEccCCCEEE-EEecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCC
Q 012699          294 PAITSLCFNHNGKILA-ASAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQ  367 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~  367 (458)
                      ..+...+|+|||+.|+ +.+.++  .|++||+.+++. ..+..+........|+|||+.|+..+. +|  .|.++|+...
T Consensus       246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            4577889999999876 444454  488889887654 445556666778999999998887664 33  5778887654


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  444 (458)
                      ......          .....+....|+|||++|+....+   ..|.+|++.+...  ........+..+.|+|||+.|+
T Consensus       325 ~~~~lt----------~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        325 NPRRIS----------FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTSGFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             CeEEee----------cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccCCCCCCCCeECCCCCEEE
Confidence            322111          112335567899999999887653   3688888865532  2222233577889999999877


Q ss_pred             EecCC------CcEEEEeC
Q 012699          445 TGSAD------HSVQVMSL  457 (458)
Q Consensus       445 s~~~d------g~v~iw~l  457 (458)
                      ..+.+      ..+.++++
T Consensus       393 ~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        393 FFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             EEEccCCCCCcceEEEEEC
Confidence            65432      24566554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.66  E-value=1.3e-14  Score=117.55  Aligned_cols=148  Identities=15%  Similarity=0.303  Sum_probs=104.3

Q ss_pred             EEEEEccCCCEEEEEec----------CCeEEEEeCCC-CceeeeeeC-CCCCeEEEEEcCCCCEEEEe--cCCCeEEEE
Q 012699          297 TSLCFNHNGKILAASAV----------DGMIHMFDMSA-GLQITGWPA-HDSAISSILFGPDETSIFSL--GSDGKIIEW  362 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  362 (458)
                      ..+.|+|+|.+|++-..          -|...+|.++. ..+...+.- ..++|.+++|+|+|+.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            56789999987765433          13455555532 334444433 34579999999999987654  457799999


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      |++ ......           .....+..+.|||+|++|++++.   .|.+.+||.+..+.+... .|. .++.++|+||
T Consensus        89 d~~-~~~i~~-----------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~-~~t~~~WsPd  154 (194)
T PF08662_consen   89 DVK-GKKIFS-----------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHS-DATDVEWSPD  154 (194)
T ss_pred             cCc-ccEeEe-----------ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccC-cEEEEEEcCC
Confidence            996 222211           12345678999999999999874   367999999976554333 343 4789999999


Q ss_pred             CCeEEEecC------CCcEEEEeCC
Q 012699          440 LPMFLTGSA------DHSVQVMSLS  458 (458)
Q Consensus       440 ~~~l~s~~~------dg~v~iw~l~  458 (458)
                      |++|+++..      |..++||++.
T Consensus       155 Gr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  155 GRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCEEEEEEeccceeccccEEEEEec
Confidence            999998764      7889999863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=5e-14  Score=114.06  Aligned_cols=160  Identities=15%  Similarity=0.314  Sum_probs=112.0

Q ss_pred             eeeeecCCCCeEEEeeccc-CCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEE--ecCC
Q 012699          240 LDLKCSPVEPIFVSAAASR-RYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAAS--AVDG  315 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg  315 (458)
                      ..+.|+|+|..|+.-...+ .......+    |...+|.++. ......+.+.. .++|.+++|+|+|+.|++.  ..++
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~----~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~   83 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYY----GEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPA   83 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEE----eeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCc
Confidence            4688999998777655421 11111111    3555665532 24455554433 3469999999999987654  4577


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM  392 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  392 (458)
                      .|.+||++ ++.+..+.  ...++.+.|+|+|++|++++.   .|.+.+||+++.+.....           ....+..+
T Consensus        84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----------~~~~~t~~  149 (194)
T PF08662_consen   84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----------EHSDATDV  149 (194)
T ss_pred             ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----------ccCcEEEE
Confidence            99999997 66666664  567889999999999999875   467999999965443211           12346889


Q ss_pred             EEccCCCEEEEEeC------CccEEEEEccCC
Q 012699          393 ALDVNGRRLLVTSG------SVRAPIYQVRGH  418 (458)
Q Consensus       393 ~~s~~g~~l~~~~~------~~~i~i~~~~~~  418 (458)
                      +|||||++|++++.      |+.++||+..+.
T Consensus       150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            99999999999875      678899999765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.3e-13  Score=127.16  Aligned_cols=237  Identities=16%  Similarity=0.138  Sum_probs=145.7

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-C--CcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-D--GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      ..+.++|.+.....   ....+...+.+.+|+ ++++.|+..+. +  ..|.+||+.+++........   .......|+
T Consensus       176 ~~L~~~D~dG~~~~---~l~~~~~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~---g~~~~~~~S  248 (427)
T PRK02889        176 YQLQISDADGQNAQ---SALSSPEPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK---GSNSAPAWS  248 (427)
T ss_pred             cEEEEECCCCCCce---EeccCCCCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC---CCccceEEC
Confidence            35667776443322   123455678899999 56666666553 2  35999999988764332222   345678999


Q ss_pred             CCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEE--e
Q 012699          246 PVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMF--D  321 (458)
Q Consensus       246 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~--d  321 (458)
                      |+++.++... .++.           ..|.++|+..+.. ..+  ..+........|+|||+.|+..+. +|...+|  +
T Consensus       249 PDG~~la~~~~~~g~-----------~~Iy~~d~~~~~~-~~l--t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        249 PDGRTLAVALSRDGN-----------SQIYTVNADGSGL-RRL--TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             CCCCEEEEEEccCCC-----------ceEEEEECCCCCc-EEC--CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence            9999887543 3310           2455556665543 333  233344567889999998876654 4555555  4


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG  398 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  398 (458)
                      +.+++. ..+..+.......+|+|+|++|+..+.++   .|.+||+.++......       .    ........|+|||
T Consensus       315 ~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-------~----~~~~~~p~~spdg  382 (427)
T PRK02889        315 ASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-------D----TTRDESPSFAPNG  382 (427)
T ss_pred             CCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-------C----CCCccCceECCCC
Confidence            444443 22222233345688999999998776654   5999999875432111       0    1123567999999


Q ss_pred             CEEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          399 RRLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       399 ~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      +.|+.++.++   .+++.++.+. ....+..+.+.+...+|+|-
T Consensus       383 ~~l~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        383 RYILYATQQGGRSVLAAVSSDGR-IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CEEEEEEecCCCEEEEEEECCCC-ceEEeecCCCCCCCCccCCC
Confidence            9998887643   3566666433 33334456677888899874

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=4.3e-13  Score=117.65  Aligned_cols=270  Identities=12%  Similarity=0.185  Sum_probs=168.7

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE-----cC-----CCcEE
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG-----TA-----DGGIK  217 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~-----dg~i~  217 (458)
                      .+++..+++++|+++|.+. +..++|++.......   ...... .+.++.|+ +.+.+|.+=     ..     .-.+.
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---lt~~~~-~~~~L~fS-P~g~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---LCVELK-KTYDLLFS-PKGNYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---EEeccc-eeeeeeec-ccccccccccccccccCCCCCCCcee
Confidence            3467788999998887764 678999998776522   122222 78899999 556666542     11     23578


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +|+++++.....+......  -+.+.|+.|..+.+--..              +.+.+|++.+.+....   .-+...|+
T Consensus       109 v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arlv~--------------nev~f~~~~~f~~~~~---kl~~~~i~  169 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARLVS--------------NEVQFYDLGSFKTIQH---KLSVSGIT  169 (566)
T ss_pred             eeeeccceehhheehhhhc--Ccccccccchhhhhhhhc--------------ceEEEEecCCccceee---eeecccee
Confidence            9999996655555444322  267888887765544333              2667776655222111   11223344


Q ss_pred             EEEEccCC--CEEEE-----EecCCe------------------------------------------------------
Q 012699          298 SLCFNHNG--KILAA-----SAVDGM------------------------------------------------------  316 (458)
Q Consensus       298 ~~~~~~~~--~~l~~-----~~~dg~------------------------------------------------------  316 (458)
                      .+.+||.+  ..+++     ++.-+.                                                      
T Consensus       170 ~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYG  249 (566)
T KOG2315|consen  170 MLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYG  249 (566)
T ss_pred             eEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccc
Confidence            44554431  11111     112223                                                      


Q ss_pred             ---EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe--cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          317 ---IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL--GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       317 ---i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                         ++++++........+ ...++|.++.|+|+++.++++  -.-..+.|||++.. .+..           ...++-+.
T Consensus       250 Eq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d-----------f~egpRN~  316 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD-----------FPEGPRNT  316 (566)
T ss_pred             cceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEe-----------CCCCCccc
Confidence               344443311111111 236899999999999876654  44678999999742 2221           23445678


Q ss_pred             EEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC------CCcEEEEeC
Q 012699          392 MALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA------DHSVQVMSL  457 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~l  457 (458)
                      +-|+|.|++|+.++-+   |.+.+||+.+.+.+..+..-  .-+-+.|+|||++++|+..      |..++||+.
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            9999999999887754   79999999997766665542  3455799999999988764      688999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.3e-13  Score=117.91  Aligned_cols=236  Identities=12%  Similarity=0.186  Sum_probs=166.8

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      |.-.-.+.|-..++.-..|.+|.+...-....     ...-+..-..++++.++..+++.|+ ...|+-++++.|+.+..
T Consensus        97 V~feiLsDD~SK~v~L~~DR~IefHak~G~hy-----~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P  170 (703)
T KOG2321|consen   97 VDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY-----RTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNP  170 (703)
T ss_pred             eeEEEeccchhhheEeecCceeeehhhcCeee-----eeecCcCCccccccCCCccEEEeec-CcceEEEEccccccccc
Confidence            33333444444444455677776653222111     1111222355666655555555544 45788899999999888


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC----CC-----CcEEEEE
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----DP-----PAITSLC  300 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----~~-----~~i~~~~  300 (458)
                      +....  +.++.+..++-..++++|+.+             |.|..||.++......+....    ++     ..|+++.
T Consensus       171 ~~~~~--~~lN~v~in~~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~  235 (703)
T KOG2321|consen  171 FETDS--GELNVVSINEEHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK  235 (703)
T ss_pred             ccccc--ccceeeeecCccceEEecccC-------------ceEEEecchhhhhheeeecccccCCCccccccCcceEEE
Confidence            87765  679999999999999999988             699999999877666554322    22     3499999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCC--CCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPD--ETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      |+.+|-.+++|+.+|.+.|||+++.+++.. ..|  .-+|..+.|.+.  ++.+++. +...++|||-.+++.....   
T Consensus       236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asi---  310 (703)
T KOG2321|consen  236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASI---  310 (703)
T ss_pred             ecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeec---
Confidence            999999999999999999999999888765 334  448899999875  4455544 4567999999887554322   


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                             .....++.+++-|++.+++++..+..+..|=+...
T Consensus       311 -------Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  311 -------EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             -------cccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence                   22334888999999999999999988877766544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.6e-13  Score=125.14  Aligned_cols=209  Identities=11%  Similarity=0.124  Sum_probs=134.4

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      ..|.++|...... ..+....  ..+...+|+|+++.++..+...          +...|.+||+.+++.......   .
T Consensus       176 ~~L~~~D~dG~~~-~~l~~~~--~~v~~p~wSPDG~~la~~s~~~----------~~~~I~~~dl~~g~~~~l~~~---~  239 (427)
T PRK02889        176 YQLQISDADGQNA-QSALSSP--EPIISPAWSPDGTKLAYVSFES----------KKPVVYVHDLATGRRRVVANF---K  239 (427)
T ss_pred             cEEEEECCCCCCc-eEeccCC--CCcccceEcCCCCEEEEEEccC----------CCcEEEEEECCCCCEEEeecC---C
Confidence            3577777644332 2232222  5688999999999988776432          113799999998876543322   2


Q ss_pred             CcEEEEEEccCCCEEEE-EecCCeEEEE--eCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCC-
Q 012699          294 PAITSLCFNHNGKILAA-SAVDGMIHMF--DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQG-  368 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~-~~~dg~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-  368 (458)
                      ......+|+|||+.|+. .+.+|...+|  |+..+. ...+..+........|+|||+.|+..+. ++...+|.+.... 
T Consensus       240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence            34678999999998864 5667765555  554443 4555555556677899999998876654 5666777654221 


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      .....      .   .........+|||||++|+..+.++   .|++||+.++... .+.. ......+.|+|||+.|+.
T Consensus       319 ~~~~l------t---~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        319 AAQRV------T---FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILY  387 (427)
T ss_pred             ceEEE------e---cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEE
Confidence            11111      0   0112234578999999999877654   6999999876432 2222 233467899999998877


Q ss_pred             ecCCC
Q 012699          446 GSADH  450 (458)
Q Consensus       446 ~~~dg  450 (458)
                      ++.++
T Consensus       388 ~~~~~  392 (427)
T PRK02889        388 ATQQG  392 (427)
T ss_pred             EEecC
Confidence            66543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.61  E-value=2.8e-12  Score=111.35  Aligned_cols=373  Identities=13%  Similarity=0.092  Sum_probs=223.4

Q ss_pred             ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccc
Q 012699           20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSK   99 (458)
Q Consensus        20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~   99 (458)
                      +..-.-++..+.+ ||.|.+|++... ..+.+|.......      +.|-.......+.+++.++||.+.+....+   +
T Consensus        28 ~~~~~~p~~~~~~-SP~G~~l~~~~~-~~V~~~~g~~~~~------l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~---~   96 (561)
T COG5354          28 FESENWPVAYVSE-SPLGTYLFSEHA-AGVECWGGPSKAK------LVRFRHPDVKYLDFSPNEKYLVTWSREPII---E   96 (561)
T ss_pred             ccccCcchhheee-cCcchheehhhc-cceEEccccchhh------eeeeecCCceecccCcccceeeeeccCCcc---C
Confidence            3335566889999 999999998764 4477787665532      223333334456677778888877654432   0


Q ss_pred             cccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCC--eE-EEEeCCCCCEEEEEeCCCcEEEEec
Q 012699          100 LEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSP--IS-CCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                      .+               ..++|.+..- -..-++......+..+.+-..+  .. -+.|+.+.+++|-- ....+.|+++
T Consensus        97 pe---------------~e~sp~~~~n-~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~  159 (561)
T COG5354          97 PE---------------IEISPFTSKN-NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI  159 (561)
T ss_pred             hh---------------hccCCccccC-ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence            00               0011111100 0000111111233444444444  44 57888888776554 2346999997


Q ss_pred             CCCCCCCccccccCCCceEEEEEecC-CCeEEEE-----EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECK-SDRLLLI-----GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                       +...............+...+|+|. +...|+.     ....+++++|.+..+..+.+-....  ..-..+.|.+.|..
T Consensus       160 -t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~~~g~~  236 (561)
T COG5354         160 -TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQLKWQVLGKY  236 (561)
T ss_pred             -CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccEEEEecCCce
Confidence             4333211111112356788888875 3344443     3567889999998776655433322  22346889999987


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE--ecCCeEEEEeCCCCcee
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS--AVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~  328 (458)
                      ++.-....-  ...-.-.+...+.++++......-..   ...++|...+|.|.++.+++.  -.+..+.++|++.. ..
T Consensus       237 ll~l~~t~~--ksnKsyfgesnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~  310 (561)
T COG5354         237 LLVLVMTHT--KSNKSYFGESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR  310 (561)
T ss_pred             EEEEEEEee--ecccceeccceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence            665332211  00111122247888888743332221   345789999999988877654  46788999999855 33


Q ss_pred             eeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          329 TGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      ..  .....=+.+.|+|.+++++.++-|   |.+-+||............          .....-+.|+||++++.+..
T Consensus       311 ~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----------~~n~s~~~wspd~qF~~~~~  378 (561)
T COG5354         311 FY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----------GLNTSYCDWSPDGQFYDTDT  378 (561)
T ss_pred             Ee--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee----------cCCceEeeccCCceEEEecC
Confidence            33  345566778999999999987764   5699999886544432211          11234467999999998775


Q ss_pred             C------CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          406 G------SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       406 ~------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      .      |+.+.|||+.+..-        ...+.+.|.|.+++.-+.+.+
T Consensus       379 ts~k~~~Dn~i~l~~v~g~~~--------fel~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         379 TSEKLRVDNSIKLWDVYGAKV--------FELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             CCcccccCcceEEEEecCchh--------hhhhhccccCCcccceeeccC
Confidence            3      67899999987632        255677788877766555544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=6.1e-13  Score=124.99  Aligned_cols=202  Identities=16%  Similarity=0.178  Sum_probs=158.1

Q ss_pred             cceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccccc
Q 012699           25 ETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFED  104 (458)
Q Consensus        25 ~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~  104 (458)
                      +.|....+ .-++..++.+..++.+-+|+...+.....+.+-..++-..-+.+..+...-++++|+.-+.+.+|+.....
T Consensus        88 ~wi~g~~l-~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   88 DWIFGAKL-FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             ccccccch-hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            34444556 66788888888899999999988877755554444444344556677788999999999999999976211


Q ss_pred             CCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc
Q 012699          105 VGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR  184 (458)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  184 (458)
                       .                                . ..+.||.+.|..+.|+.||++++++|.|.++|+|++++.+... 
T Consensus       167 -~--------------------------------p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-  211 (967)
T KOG0974|consen  167 -K--------------------------------P-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-  211 (967)
T ss_pred             -C--------------------------------c-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence             0                                0 0467999999999999999999999999999999999887653 


Q ss_pred             cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699          185 NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN  264 (458)
Q Consensus       185 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  264 (458)
                      .....|...++.+.|. ++  .+++++.|-+.++|+.+..+. ..+..+.. ..+..++..++....++++.|       
T Consensus       212 ~~~fgHsaRvw~~~~~-~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g-~~iw~~~~~~~~~~~vT~g~D-------  279 (967)
T KOG0974|consen  212 CTGFGHSARVWACCFL-PN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSG-KGIWKIAVPIGVIIKVTGGND-------  279 (967)
T ss_pred             cccccccceeEEEEec-cc--eeEEeccceEEEEEeccccee-hhhhhhhh-cceeEEEEcCCceEEEeeccC-------
Confidence            4567788999999998 44  899999999999997654443 35555543 568999999999999999988       


Q ss_pred             eeeccceeEEEEECCC
Q 012699          265 IYSWGFASLTVWNMKT  280 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~  280 (458)
                            |.+++||+..
T Consensus       280 ------s~lk~~~l~~  289 (967)
T KOG0974|consen  280 ------STLKLWDLNG  289 (967)
T ss_pred             ------cchhhhhhhc
Confidence                  5888888754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.61  E-value=6.6e-12  Score=112.49  Aligned_cols=250  Identities=15%  Similarity=0.231  Sum_probs=161.5

Q ss_pred             CCeEEEEeCCCCCEEEEEeC----CCcEEEEecCCC--CCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEE
Q 012699          148 SPISCCRFSSSGNNIASASV----DGTVRIWTYDSS--TPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWN  220 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd  220 (458)
                      .....++++|++++|+++.+    ++.|..|++...  ...........+.....++++ +++++|+++. .+|.+.+++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEE
Confidence            34556889999999988876    578999988764  222211222245566788998 5566555554 589999999


Q ss_pred             cCC-Cceeee---cc--------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc--ee--
Q 012699          221 VDA-KRVVCD---LN--------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK--AM--  284 (458)
Q Consensus       221 ~~~-~~~~~~---~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~--~~--  284 (458)
                      +.. +.....   +.        ..+.......+.++|+++++++.....            ..|.+|++....  ..  
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------D~v~~~~~~~~~~~l~~~  183 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------DRVYVYDIDDDTGKLTPV  183 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------TEEEEEEE-TTS-TEEEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------CEEEEEEEeCCCceEEEe
Confidence            987 333222   11        012224577899999999888775433            399999987654  32  


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCC--CCc--eeeeeeC----C--CCCeEEEEEcCCCCEEEEe
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMS--AGL--QITGWPA----H--DSAISSILFGPDETSIFSL  353 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~--~~~~~~~----~--~~~v~~~~~~~~~~~l~~~  353 (458)
                      ..+... .....+.++|+|+++++++..+ ++.|.+|++.  ++.  .+..+..    .  ......|+++|||++|+++
T Consensus       184 ~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs  262 (345)
T PF10282_consen  184 DSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS  262 (345)
T ss_dssp             EEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred             eccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence            233333 3345799999999998876654 7789999988  332  2222221    1  1257889999999988776


Q ss_pred             c-CCCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699          354 G-SDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG  417 (458)
Q Consensus       354 ~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~  417 (458)
                      . .++.|.+|++... +.+......      ......+..++++|+|++|+++.. ++.|.+|+++.
T Consensus       263 nr~~~sI~vf~~d~~~g~l~~~~~~------~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  263 NRGSNSISVFDLDPATGTLTLVQTV------PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             ECTTTEEEEEEECTTTTTEEEEEEE------EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             eccCCEEEEEEEecCCCceEEEEEE------eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            5 4778999999432 333222111      112344789999999999999885 57899998854

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=1e-11  Score=103.85  Aligned_cols=275  Identities=11%  Similarity=0.172  Sum_probs=181.0

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASV---DGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKA  218 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~  218 (458)
                      .+.+.++-|+|+|++++|.++-.   +|.|..|.++.  ++..........+.+...++++ +++++++++.. .|.|.+
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v  115 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSV  115 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEEE
Confidence            46677889999999999988854   47788887765  4443322233334555888998 77777777765 579999


Q ss_pred             EEcCC-CceeeeccCCCCC----------CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe
Q 012699          219 WNVDA-KRVVCDLNTTDAF----------PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL  287 (458)
Q Consensus       219 wd~~~-~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~  287 (458)
                      +-++. |.+........+.          +-+....+.|+++++++..-..            -.|.+|++..++....-
T Consensus       116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~  183 (346)
T COG2706         116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPAD  183 (346)
T ss_pred             EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCcccccc
Confidence            99865 3322221211111          1277889999999998876543            29999999977654432


Q ss_pred             ecC-CCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCC-ceeeeeeC---------CCCCeEEEEEcCCCCEEEEecC
Q 012699          288 PLG-EDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAG-LQITGWPA---------HDSAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       288 ~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~  355 (458)
                      ... ......+.|.|+|++++..+.++ +++|.+|..+.. ..+..++.         ......+|..+|||++|+++..
T Consensus       184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence            211 12245689999999998876554 899999998763 22232221         1345678899999999998755


Q ss_pred             -CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcccccC---CCCCc
Q 012699          356 -DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASGMRTL---PHGAA  430 (458)
Q Consensus       356 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~~~~~---~h~~~  430 (458)
                       ...|.+|.+......+....     ....+......+.|+|+|++|+++..+ ..|.+|..+...-.....   .....
T Consensus       264 g~dsI~~f~V~~~~g~L~~~~-----~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~  338 (346)
T COG2706         264 GHDSIAVFSVDPDGGKLELVG-----ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPE  338 (346)
T ss_pred             CCCeEEEEEEcCCCCEEEEEE-----EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCC
Confidence             44788888876544332211     112334447789999999999999876 568888776543222222   23345


Q ss_pred             EEEEEEC
Q 012699          431 ITTVDWH  437 (458)
Q Consensus       431 v~~~~~~  437 (458)
                      ..|+.|.
T Consensus       339 Pvcv~f~  345 (346)
T COG2706         339 PVCVKFL  345 (346)
T ss_pred             cEEEEEc
Confidence            5566654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=2.3e-13  Score=126.00  Aligned_cols=205  Identities=16%  Similarity=0.132  Sum_probs=136.4

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC--c
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVD---GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG--G  215 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~  215 (458)
                      +.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...   ............|+|.+..++++.+.+|  .
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~  273 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFSPDGRRLALTLSRDGNPE  273 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence            3455677789999999999999887643   469999998776432   1122334457899954444545656665  5


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      |.+||+.+++... +....  .......|+|+++.++..+....          ...|.++|+.+++... +...+  ..
T Consensus       274 Iy~~d~~~g~~~~-lt~~~--~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~-lt~~g--~~  337 (433)
T PRK04922        274 IYVMDLGSRQLTR-LTNHF--GIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAER-LTFQG--NY  337 (433)
T ss_pred             EEEEECCCCCeEE-CccCC--CCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEE-eecCC--CC
Confidence            9999999887543 32221  33467899999998887764320          0257777887765433 32222  23


Q ss_pred             EEEEEEccCCCEEEEEecCC---eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccC
Q 012699          296 ITSLCFNHNGKILAASAVDG---MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQN  366 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~  366 (458)
                      ....+|+|+|++|+..+.++   .|.+||+.+++.. .+. +........|+|||++++..+.+   +.+.++++..
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            45689999999998765443   6999999877654 333 22345567999999988776653   3577777753

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.61  E-value=2.7e-13  Score=111.75  Aligned_cols=309  Identities=14%  Similarity=0.208  Sum_probs=211.1

Q ss_pred             HHHHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699           11 EEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS   90 (458)
Q Consensus        11 ~~~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (458)
                      ..+...++.++||.+.|++... -+...-+.+.+.|.+++||.-....                                
T Consensus        11 ~~kp~ll~~~eG~~d~vn~~~l-~~~e~gv~~~s~drtvrv~lkrds~--------------------------------   57 (404)
T KOG1409|consen   11 TKKPELLSKIEGSQDDVNAAIL-IPKEEGVISVSEDRTVRVWLKRDSG--------------------------------   57 (404)
T ss_pred             ccchhhhhhhcCchhhhhhhee-ccCCCCeEEccccceeeeEEecccc--------------------------------
Confidence            3566788999999999999888 8888888899999999988533220                                


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGT  170 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  170 (458)
                                +                 |.|+                   ....-..+++++.+.++...|+.|-..|+
T Consensus        58 ----------q-----------------~wps-------------------I~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   58 ----------Q-----------------YWPS-------------------IYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             ----------c-----------------cCch-------------------hhhhCCCCceEeeeeccceEEEEEEecce
Confidence                      0                 0011                   01123467889999999999999999999


Q ss_pred             EEEEecCCCC--CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC
Q 012699          171 VRIWTYDSST--PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE  248 (458)
Q Consensus       171 v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  248 (458)
                      +.-+.+...-  .........|...+..+-|+ .....+++.+.|..+.---.+.+..+..+....   ...++.+.-. 
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~---~~t~~~~d~~-  166 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET---PASALQFDAL-  166 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeeccCCcccceEeec---cCCCCceeeE-
Confidence            9888764422  22223445577889999998 677788888888777655455544332211110   1111111111 


Q ss_pred             CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-e
Q 012699          249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-Q  327 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~  327 (458)
                       +...+...             |.+..-.+....+....++.+|.+.+.+++|.|....|++|..|..+.+||+--.+ .
T Consensus       167 -~~fvGd~~-------------gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  167 -YAFVGDHS-------------GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             -EEEecccc-------------cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence             22222222             45555555444555555567899999999999999999999999999999986533 3


Q ss_pred             eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-------------------------------------
Q 012699          328 ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-------------------------------------  370 (458)
Q Consensus       328 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------  370 (458)
                      ...+.+|...|..+...+.-+.+++++.||.|.+|+++.....                                     
T Consensus       233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c  312 (404)
T KOG1409|consen  233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC  312 (404)
T ss_pred             eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence            4567799999999999888889999999999999999741110                                     


Q ss_pred             ------------------------EEee----------cC--CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699          371 ------------------------LWTR----------NC--SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       371 ------------------------~~~~----------~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~  414 (458)
                                              ...+          ..  ..+..+......|+.+.+...-.+|++++.|..|+|||
T Consensus       313 rkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd  392 (404)
T KOG1409|consen  313 RKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD  392 (404)
T ss_pred             hhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence                                    0000          00  01222333455688888888888999999999999999


Q ss_pred             ccC
Q 012699          415 VRG  417 (458)
Q Consensus       415 ~~~  417 (458)
                      +..
T Consensus       393 ~~~  395 (404)
T KOG1409|consen  393 VRS  395 (404)
T ss_pred             chh
Confidence            964

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=1.8e-12  Score=113.55  Aligned_cols=308  Identities=13%  Similarity=0.148  Sum_probs=197.0

Q ss_pred             CCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeC-----------CCcEEEEecCCCC
Q 012699          117 GLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASV-----------DGTVRIWTYDSST  180 (458)
Q Consensus       117 ~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~  180 (458)
                      ..|||-|.++++....+..-.     ..++.| .|. .|.-+.|||..+||+|-+.           ...++|||+.++.
T Consensus       216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             EEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            458999999988655443322     222222 244 4889999999999999652           2579999999998


Q ss_pred             CCCccccccCCCceE-EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC
Q 012699          181 PASRNATIYCGTEIM-SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR  259 (458)
Q Consensus       181 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  259 (458)
                      ..........+..++ -..|+ .++.+++.-.. ..|.||+..+-.++..-..  ....|....|+|.+..|+.-.....
T Consensus       294 lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  294 LKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             hhcceeccCCCccccceEEec-cCCceeEEecc-ceEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEccccc
Confidence            765444433333333 35788 78888887776 4799998776443322111  1256889999999998887654421


Q ss_pred             CCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe----------cCCeEEEEeCCCCce-e
Q 012699          260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA----------VDGMIHMFDMSAGLQ-I  328 (458)
Q Consensus       260 ~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~-~  328 (458)
                      .-        ...+.+..+.+++.++...+..  -.=..+-|-.+|.+|+.--          .-..+.|+.++.... +
T Consensus       370 ~~--------parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  370 NI--------PARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             CC--------cceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            11        1377777777777666544321  1123466777888887532          112355666654332 2


Q ss_pred             eeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699          329 TGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT  404 (458)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  404 (458)
                      ... .-...|...+|-|.|+.+++.+.   ..++.+|.+.+. ..+...       . .-.....+.+.|+|.|++++++
T Consensus       440 e~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV-------k-~~dk~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  440 EVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV-------K-ELDKKFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             eee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh-------h-hhcccccceEEEcCCCcEEEEE
Confidence            222 34668899999999988776554   456889988742 211100       0 1122446779999999999887


Q ss_pred             eC---CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          405 SG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       405 ~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      .-   .|.+.++|..-......-.......+.+.|.|.|+++++++.-
T Consensus       511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  511 ALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             EecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence            54   6889999987522111111222456789999999999998764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=9.9e-13  Score=106.19  Aligned_cols=266  Identities=15%  Similarity=0.129  Sum_probs=178.4

Q ss_pred             CCcEEEEecCCCCCCCcc-ccccCCCceEEEEEec--CCCe-EEEEEcCCCcEEEEEcCCCceeeeccCCCC---C-Cce
Q 012699          168 DGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWEC--KSDR-LLLIGTADGGIKAWNVDAKRVVCDLNTTDA---F-PSV  239 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~-~~v  239 (458)
                      -|.+.+|++...+..... ........+..+.|..  .++. .++-+...|.|.+|..........++.-..   . ...
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~  124 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA  124 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence            467888888776655411 1122335567777752  3444 566777889999998765544433332211   0 124


Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEE
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIH  318 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~  318 (458)
                      .++.|++.+..+++...+             |.+.+-+............+.|..+.....|+. +.+++++|+.|+.+.
T Consensus       125 lslD~~~~~~~i~vs~s~-------------G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~  191 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSR-------------GSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS  191 (339)
T ss_pred             eEEEeeccCceEEEEcCC-------------CcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence            567888888887777665             577766655555555445567877888888886 456889999999999


Q ss_pred             EEeCCC-Cceeee-eeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          319 MFDMSA-GLQITG-WPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       319 v~d~~~-~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      .||++. ++.+.. .+.|...|.+|.-+| .+.++++|+.|..|++||.++.++++...         ...+.|+.+..+
T Consensus       192 ~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~---------~v~GGVWRi~~~  262 (339)
T KOG0280|consen  192 CWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA---------KVGGGVWRIKHH  262 (339)
T ss_pred             EEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC---------ccccceEEEEec
Confidence            999993 444443 567888999999887 67799999999999999999877655321         344789999999


Q ss_pred             cCC--CEEEEEeCCccEEEEEccCCCcc-----cccCCCCCcEEEEEECCCCCeEEEec-CCCcEE-EEe
Q 012699          396 VNG--RRLLVTSGSVRAPIYQVRGHASG-----MRTLPHGAAITTVDWHPTLPMFLTGS-ADHSVQ-VMS  456 (458)
Q Consensus       396 ~~g--~~l~~~~~~~~i~i~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~-iw~  456 (458)
                      |.-  +.|+++-.+| .+|-+.+.....     .....|.+-+..-.|......||||+ .|..++ +|-
T Consensus       263 p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  263 PEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             chhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence            943  3444444444 666666544322     12225777777778855556788876 677755 773

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=5.2e-12  Score=111.04  Aligned_cols=264  Identities=13%  Similarity=0.217  Sum_probs=165.7

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEE-----EcCCCcEEEEEcCCC
Q 012699          151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLI-----GTADGGIKAWNVDAK  224 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~  224 (458)
                      ++..|++|..+.|- -..+.+.+|+..+....   ....+...|..+.++|. ....+++     .+.-+.+++|.....
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~---~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI---QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCccce---eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            68889988754332 22467999998774332   23345677888999865 2333443     344568999987632


Q ss_pred             ceeeeccCCCC-CCceeeeeecCCCCeEE-EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          225 RVVCDLNTTDA-FPSVLDLKCSPVEPIFV-SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       225 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      .....+....- ...-..+.|++-+.-|+ .++.+-  +.....-.+..++++.+++.....-.+   ...++|.++.|+
T Consensus       205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV--Dktn~SYYGEq~Lyll~t~g~s~~V~L---~k~GPVhdv~W~  279 (566)
T KOG2315|consen  205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV--DKTNASYYGEQTLYLLATQGESVSVPL---LKEGPVHDVTWS  279 (566)
T ss_pred             cccchhhhccccccceeEEEeccCCceEEEEEEEee--cCCCccccccceEEEEEecCceEEEec---CCCCCceEEEEC
Confidence            22111111000 01223577887777332 222221  111122233458888888833333322   235789999999


Q ss_pred             cCCCEEEE--EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCC
Q 012699          303 HNGKILAA--SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       303 ~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      |+++-+++  |-.-..+.+||++ +.++..+.  +++=+++-|+|.|++++.++-   -|.|-+||+.+.+.+...    
T Consensus       280 ~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~----  352 (566)
T KOG2315|consen  280 PSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF----  352 (566)
T ss_pred             CCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc----
Confidence            99987655  5567789999987 66776654  678889999999999988776   578999999986543321    


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeC------CccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSG------SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                             ....-+-+.|+|||+++++++.      |+.++||+..+.........  .....+.|-|-
T Consensus       353 -------~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~--sEL~qv~W~P~  411 (566)
T KOG2315|consen  353 -------KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK--SELLQVEWRPF  411 (566)
T ss_pred             -------ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhh--HhHhheeeeec
Confidence                   1122356899999999999875      57899999987643222221  14666777653

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=2.6e-12  Score=113.62  Aligned_cols=194  Identities=19%  Similarity=0.330  Sum_probs=156.1

Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccC-CCceEEEEEe------c-------------CCCeEEEEEcCCCc
Q 012699          156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC-GTEIMSLEWE------C-------------KSDRLLLIGTADGG  215 (458)
Q Consensus       156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~------~-------------~~~~~l~~~~~dg~  215 (458)
                      .|...++|....||.+++|+...++.........+ .+...+..|.      |             .+...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            34567899999999999999987765432222221 2233334442      1             34567888999999


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      |.+|++..++....+....+++.|.++.++.+-..+.+++.+             +.+..|+....+..+...  ..+..
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-------------~~v~~~~~~~~~~~~~~~--~~~~~  146 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-------------LKVVYILEKEKVIIRIWK--EQKPL  146 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-------------eeEEEEecccceeeeeec--cCCCc
Confidence            999999999999999988898999999999999999999988             599999999988888775  45567


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC-----CCEEEEec-CCCeEEEEeccC
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD-----ETSIFSLG-SDGKIIEWSLQN  366 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~  366 (458)
                      +.+++++||++.+++++  +.|++||+++++.+..|.+|.++|+++.|-.+     |.++.++. .+..+.+|-+..
T Consensus       147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            89999999999999886  57999999999999999999999999999776     66666543 466688887765

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.57  E-value=1.2e-12  Score=108.03  Aligned_cols=283  Identities=17%  Similarity=0.219  Sum_probs=176.2

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC---CCcc------------ccccCCCceEEEEEecC-CCeEEEEE
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP---ASRN------------ATIYCGTEIMSLEWECK-SDRLLLIG  210 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~------------~~~~~~~~v~~~~~~~~-~~~~l~~~  210 (458)
                      ..-|.++.|...|.+||||..+|.|.++.-.....   ....            ....-...|..+.|.++ +...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45688999999999999999999999996432221   0000            01112345888899743 34567778


Q ss_pred             cCCCcEEEEEcCCCceeee---ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe
Q 012699          211 TADGGIKAWNVDAKRVVCD---LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL  287 (458)
Q Consensus       211 ~~dg~i~~wd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~  287 (458)
                      +.|.+|++|.+........   +........+..+..-.      .+..+              .+.     ...+.+.+
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~------~~~~~--------------~~v-----ea~prRv~  159 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPV------EGRHD--------------LEV-----EASPRRVY  159 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeecee------ecccc--------------cee-----eeeeeeec
Confidence            8999999999875443220   11111111222221110      00000              000     01223333


Q ss_pred             ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce---eeeeeCC-----CCCeEEEEEcC-CCCEEEEecCCCe
Q 012699          288 PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ---ITGWPAH-----DSAISSILFGP-DETSIFSLGSDGK  358 (458)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~  358 (458)
                       ...|..-|+++.++.|...++++ .|=.|.+|+++-...   +..++++     ..-|++..|+| ..+.++-.+..|+
T Consensus       160 -aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  160 -ANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             -cccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence             35788889999999999988886 477899999865322   2222333     34688999999 4567888888999


Q ss_pred             EEEEeccCCCeeEEeecCCc-ccCC------CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CCC---
Q 012699          359 IIEWSLQNQGQVLWTRNCSR-FCDP------ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LPH---  427 (458)
Q Consensus       359 i~iwd~~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~h---  427 (458)
                      |++-|++............. ...+      ...-..|..+.|+++|+|+++-.. .+|++||++....+... .-|   
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l  316 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL  316 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence            99999995432221111000 0001      112345788999999999986432 67999999655444332 222   


Q ss_pred             ---------CCcE---EEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          428 ---------GAAI---TTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       428 ---------~~~v---~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                               .+.|   ..++|+-++..++||+....++++++
T Consensus       317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence                     2222   45889999999999999999999985

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=3.3e-12  Score=118.72  Aligned_cols=235  Identities=17%  Similarity=0.184  Sum_probs=148.0

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      ..|.++|.......   ....+...+....|+ +++++|+....+   ..|++||+.+++........   ..+..+.|+
T Consensus       170 ~~l~~~d~~g~~~~---~l~~~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~---~~~~~~~~s  242 (417)
T TIGR02800       170 YELQVADYDGANPQ---TITRSREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP---GMNGAPAFS  242 (417)
T ss_pred             ceEEEEcCCCCCCE---EeecCCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC---CCccceEEC
Confidence            35777777544332   223344568888999 667777766543   47999999988654332221   345678999


Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeC
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDM  322 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~  322 (458)
                      |+++.++......          +...|.+||+.++......   .+........|+|+|+.|+..+.. +  .|+++|+
T Consensus       243 pDg~~l~~~~~~~----------~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       243 PDGSKLAVSLSKD----------GNPDIYVMDLDGKQLTRLT---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCCCEEEEEECCC----------CCccEEEEECCCCCEEECC---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            9999776543221          1137899999886654332   232334567899999988766543 3  6888888


Q ss_pred             CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699          323 SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       323 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      .+++. ..+..+........|+|++++++.++.++   .|.+||+.+.......       .    ........|+|||+
T Consensus       310 ~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-------~----~~~~~~p~~spdg~  377 (417)
T TIGR02800       310 DGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-------D----TGLDESPSFAPNGR  377 (417)
T ss_pred             CCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-------C----CCCCCCceECCCCC
Confidence            76654 34444556677889999999999888765   7889998764321110       0    01123468999999


Q ss_pred             EEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699          400 RLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDW  436 (458)
Q Consensus       400 ~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~  436 (458)
                      +|+..+.++   .+++.+..+.. ...+..+.+.+..++|
T Consensus       378 ~l~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       378 MILYATTRGGRGVLGLVSTDGRF-RARLPLGNGDVREPAW  416 (417)
T ss_pred             EEEEEEeCCCcEEEEEEECCCce-eeECCCCCCCcCCCCC
Confidence            998877653   45666655432 2223223444554444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.7e-11  Score=107.61  Aligned_cols=278  Identities=10%  Similarity=0.174  Sum_probs=193.6

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-----------CCcEEE
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-----------DGGIKA  218 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~~  218 (458)
                      -+-+.|||.|.||+|--.-| |.+|--.+-...   ... .+..|.-+.|+ |+.++|++-+.           ...+.|
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~---~RF-~Hp~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRI---QRF-YHPGVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHH---Hhc-cCCCceeeecC-CccceEEEecCCccccCcccCCCceEEE
Confidence            35689999999999987766 889954433322   222 34567889999 78899998653           257999


Q ss_pred             EEcCCCceeeeccCCCCCCce-eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSV-LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      ||+.+|.....+........+ .-..|+.|+++++....+              .|.||+..+..++..-.+  ....|.
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~--------------sisIyEtpsf~lld~Ksl--ki~gIr  350 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN--------------SISIYETPSFMLLDKKSL--KISGIR  350 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEeccCCceeEEeccc--------------eEEEEecCceeeeccccc--CCcccc
Confidence            999999988887764332333 347899999999988776              999999877554433222  224588


Q ss_pred             EEEEccCCCEEEEEec-----CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec----------CCCeEEEE
Q 012699          298 SLCFNHNGKILAASAV-----DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG----------SDGKIIEW  362 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw  362 (458)
                      ...|+|.+.+||.=..     -..+.+-.+.+++.+++-.-|.-.=..+-|..+|.+|+.--          .=..+.|+
T Consensus       351 ~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf  430 (698)
T KOG2314|consen  351 DFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF  430 (698)
T ss_pred             CcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEE
Confidence            8999999988886432     24677778888877777666655556678888888887432          12235666


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccC--CCCCcEEEEEEC
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTL--PHGAAITTVDWH  437 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~  437 (458)
                      .++....+...         ......+...+|-|.|..+++-+.+   .++.+|.+++......+.  -.....+.+.|+
T Consensus       431 rireKdIpve~---------velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfws  501 (698)
T KOG2314|consen  431 RIREKDIPVEV---------VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWS  501 (698)
T ss_pred             EeeccCCCcee---------eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEc
Confidence            66654433322         2345568899999999988877664   578999888432222222  123567889999


Q ss_pred             CCCCeEEEe---cCCCcEEEEeCC
Q 012699          438 PTLPMFLTG---SADHSVQVMSLS  458 (458)
Q Consensus       438 ~~~~~l~s~---~~dg~v~iw~l~  458 (458)
                      |.|++++.+   |..|.+..+|.+
T Consensus       502 PkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  502 PKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             CCCcEEEEEEecccccceEEEecc
Confidence            999987765   457888888864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.7e-11  Score=113.98  Aligned_cols=237  Identities=15%  Similarity=0.169  Sum_probs=148.3

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-C--CcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-D--GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP  246 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (458)
                      .|.++|.+.....   ....+...+....|+ ++++.|+..+. +  ..|.+||+.+++........   .......|+|
T Consensus       180 ~l~~~d~~g~~~~---~l~~~~~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGARAV---TLLQSREPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCCce---EEecCCCceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECC
Confidence            4777777655432   223445678899999 56666655443 3  36899999988754432222   2345689999


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeCC
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDMS  323 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~  323 (458)
                      +++.++......          +...|.++|+.+++... +.  .+........|+|+|+.|+..+. +|  .|+++|+.
T Consensus       253 DG~~la~~~~~~----------g~~~Iy~~d~~~~~~~~-lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        253 DGSKLAFVLSKD----------GNPEIYVMDLASRQLSR-VT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             CCCEEEEEEccC----------CCceEEEEECCCCCeEE-cc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            999887543321          01378899999876544 22  23344567889999998876654 33  68888887


Q ss_pred             CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-C--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          324 AGLQITGWPAHDSAISSILFGPDETSIFSLGSD-G--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +++... +...........|+|+|++|+..+.+ +  .|.+||+.++......       .. .   ......|+|||+.
T Consensus       320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-------~~-~---~~~~p~~spdg~~  387 (430)
T PRK00178        320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-------DT-S---LDESPSVAPNGTM  387 (430)
T ss_pred             CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-------CC-C---CCCCceECCCCCE
Confidence            776433 22222334457899999998876653 3  4888898875432211       00 1   1123589999999


Q ss_pred             EEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          401 LLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       401 l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      ++..+.+   ..++++++.+... ..+..+.+.+...+|+|-
T Consensus       388 i~~~~~~~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        388 LIYATRQQGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEecCCceEEEEEECCCCce-EECcCCCCCcCCCccCCC
Confidence            9887754   3577777765432 233344566777888874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.1e-11  Score=114.82  Aligned_cols=237  Identities=14%  Similarity=0.141  Sum_probs=144.9

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP  246 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (458)
                      .+.++|.+.....   ........+....|+ ++++.|+..+ .++  .|.+||+.+++........   .......|+|
T Consensus       199 ~l~i~d~dG~~~~---~l~~~~~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSP  271 (448)
T PRK04792        199 QLMIADYDGYNEQ---MLLRSPEPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSP  271 (448)
T ss_pred             EEEEEeCCCCCce---EeecCCCcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECC
Confidence            5666776654432   223345678889999 5666665543 333  5888999887754322221   2344689999


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeCC
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDMS  323 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~  323 (458)
                      +++.++......          +...|.++|+.+++.....   .+.......+|+|||+.|+..+. ++  .|+++|+.
T Consensus       272 DG~~La~~~~~~----------g~~~Iy~~dl~tg~~~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~  338 (448)
T PRK04792        272 DGKKLALVLSKD----------GQPEIYVVDIATKALTRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA  338 (448)
T ss_pred             CCCEEEEEEeCC----------CCeEEEEEECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            999887654321          1136888899887654422   23344577899999998876654 33  57777887


Q ss_pred             CCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          324 AGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +++... +..........+|+|||++|+..+. ++  .|.++|+.++......       .. .   ......|+|||+.
T Consensus       339 ~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-------~~-~---~d~~ps~spdG~~  406 (448)
T PRK04792        339 SGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT-------ST-R---LDESPSVAPNGTM  406 (448)
T ss_pred             CCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc-------CC-C---CCCCceECCCCCE
Confidence            766433 2222233345789999999887655 34  3555677655322110       00 0   1123479999999


Q ss_pred             EEEEeCC-c--cEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          401 LLVTSGS-V--RAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       401 l~~~~~~-~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      |+..+.+ +  .+++++.++. ....+..+.+.+...+|+|-
T Consensus       407 I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        407 VIYSTTYQGKQVLAAVSIDGR-FKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCCC
Confidence            8876654 3  4777777544 33334445567788888873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=8.8e-13  Score=123.92  Aligned_cols=275  Identities=13%  Similarity=0.110  Sum_probs=182.5

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEe----cCCCeEEEEEcCCCcEEEEEc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE----CKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      |-+++++..+-.  ++|+.|. .-.+.+||+..+..+...... +..++.   +.    +-.+.+++++..-+.+..=+.
T Consensus         6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~-~~~~~H---~~e~~~~l~~~~~v~~~~~~~v~~~~~   78 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQS-KILEVH---RGEGKVKLLSGKIVTCAKSDEVYVKEA   78 (967)
T ss_pred             ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhh-cccccc---cccccceeccceEEEEEeecceeecch
Confidence            345555666544  4666553 457999999887654321111 111111   00    011234455444333333222


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC--cEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP--AITSL  299 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~i~~~  299 (458)
                      ..... ..+     ...+....+......++....+             +.+.+||...+.....+......-  ...-+
T Consensus        79 ~~~~~-~~~-----s~wi~g~~l~~e~k~i~l~~~~-------------ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~  139 (967)
T KOG0974|consen   79 SNQII-ERF-----SDWIFGAKLFEENKKIALVTSR-------------NSLLIRDSKNSSVLSKIQSDERCTLYSSLII  139 (967)
T ss_pred             hhhhh-hhc-----cccccccchhhhcceEEEEEcC-------------ceEEEEecccCceehhcCCCceEEEEeEEEE
Confidence            11111 000     0223334444555566665555             399999998776665553222111  11223


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      -++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+.||+++++.|+|.++++|++.+.+...        
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------  211 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------  211 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------
Confidence            456677789999999999999987444334688999999999999999999999999999999999875432        


Q ss_pred             cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .....|...+..+.|.|+  .+++++.|-+.++|+.+... +..+.+|. ..++.++..++...++|++.||.+++|++
T Consensus       212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             cccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            234578889999999999  99999999999999776653 33555665 57999999999999999999999999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.52  E-value=2.1e-10  Score=100.05  Aligned_cols=266  Identities=9%  Similarity=0.054  Sum_probs=162.7

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc---------CCCcEEEEEcCCCceeeeccCCCC----
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT---------ADGGIKAWNVDAKRVVCDLNTTDA----  235 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~~~~~~~~~~~~~----  235 (458)
                      ++|.+.|..+.+.+..   ...+.....+ ++|.+..+.++.+         .+..|.+||..+.+.+..+.....    
T Consensus        27 ~~v~ViD~~~~~v~g~---i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGM---TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEE---EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            7899999988765532   2222222334 7744444444445         578999999999999988876532    


Q ss_pred             -CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          236 -FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       236 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                       ......++++|+|++++....+..           +.+.+.|+.+++.+..+.....   ..-...+++..+  +-+.|
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~-----------~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~--~~~~D  166 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPS-----------PAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFF--MHCRD  166 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCC-----------CEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccE--EEeec
Confidence             123447899999999987764411           5999999999999998875331   222233322222  22345


Q ss_pred             CeEEEEeCCC-Cce-eeeee-CCC--CCeEE-EEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC----CC
Q 012699          315 GMIHMFDMSA-GLQ-ITGWP-AHD--SAISS-ILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD----PE  383 (458)
Q Consensus       315 g~i~v~d~~~-~~~-~~~~~-~~~--~~v~~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~  383 (458)
                      |......+.+ ++. ....+ .+.  .++.. -.|.+ +|++++.... |+|.+.|+...+..... ....+..    ..
T Consensus       167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~~~~~~~~~~~~~  244 (352)
T TIGR02658       167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-AIEAFTEAEKADG  244 (352)
T ss_pred             CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc-eeeeccccccccc
Confidence            5444433322 221 11111 011  11000 03455 8887777666 99999997654322111 1001100    01


Q ss_pred             CCCCceeEEEEccCCCEEEEEe----------CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEec-CCCc
Q 012699          384 SSKSCRHEMALDVNGRRLLVTS----------GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGS-ADHS  451 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~----------~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~dg~  451 (458)
                      -.......++++|+++.+++..          ..+.|.++|..+.+.+..+. -...+..++++||++ +|++.. .++.
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc
Confidence            1334445599999999999853          22579999998886665544 245899999999999 777665 6788


Q ss_pred             EEEEeC
Q 012699          452 VQVMSL  457 (458)
Q Consensus       452 v~iw~l  457 (458)
                      |.+.|.
T Consensus       324 VsViD~  329 (352)
T TIGR02658       324 LYIFDA  329 (352)
T ss_pred             EEEEEC
Confidence            999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=1.3e-13  Score=120.88  Aligned_cols=288  Identities=17%  Similarity=0.264  Sum_probs=196.9

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      .+..+.||+..|+.++--.+.+.+++++.|++|++|.++....     ........|..+|.++.|- .+.+++++  -|
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~S--cD  803 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIAS--CD  803 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceeee--cc
Confidence            4557889999999998877778899999999999999864321     1223445577889999998 56666655  47


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCC--CCeEEEe-ecccCCCCcceeeccceeEEEEECCCCceeEEeecC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV--EPIFVSA-AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG  290 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~  290 (458)
                      |.|.+||.--++++..+......+.+..+..-++  ...++.+ +..             .+++++|.+..+....++..
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae-------------STVKl~DaRsce~~~E~kVc  870 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE-------------STVKLFDARSCEWTCELKVC  870 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch-------------hhheeeecccccceeeEEec
Confidence            8899999988887765544433355555555554  3334333 333             49999999998877766543


Q ss_pred             ---CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE-EeccC
Q 012699          291 ---EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE-WSLQN  366 (458)
Q Consensus       291 ---~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~  366 (458)
                         +....+.+++..+.|++++++-.+|.|.+.|.++|+.+..++..+-....++- |....|+....|..+.+ |-..+
T Consensus       871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcC
Confidence               23356899999999999999999999999999999999888766655555554 56667887778888888 87665


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc----cccc--CCCCCcEEEEEECCCC
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS----GMRT--LPHGAAITTVDWHPTL  440 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~----~~~~--~~h~~~v~~~~~~~~~  440 (458)
                      +.........+      .....     +-.-|..|+++...+.+.+|.-.....    +.++  ....+..++++--|-+
T Consensus       950 gimh~q~kppp------epahf-----lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen  950 GIMHLQDKPPP------EPAHF-----LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred             CeeeeccCCCC------cchhh-----hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence            43222111100      00000     112345566666666677774322111    1111  1345678889988988


Q ss_pred             CeEEEecCCCcEEE
Q 012699          441 PMFLTGSADHSVQV  454 (458)
Q Consensus       441 ~~l~s~~~dg~v~i  454 (458)
                      .-+..|.+.|.|.+
T Consensus      1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhccCCCCceee
Confidence            87888999998875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.52  E-value=8.8e-12  Score=115.86  Aligned_cols=208  Identities=14%  Similarity=0.119  Sum_probs=137.1

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      ..|.++|........ +....  ..+....|+|+++.++......          +...|++||+.+++......   ..
T Consensus       170 ~~l~~~d~~g~~~~~-l~~~~--~~~~~p~~Spdg~~la~~~~~~----------~~~~i~v~d~~~g~~~~~~~---~~  233 (417)
T TIGR02800       170 YELQVADYDGANPQT-ITRSR--EPILSPAWSPDGQKLAYVSFES----------GKPEIYVQDLATGQREKVAS---FP  233 (417)
T ss_pred             ceEEEEcCCCCCCEE-eecCC--CceecccCCCCCCEEEEEEcCC----------CCcEEEEEECCCCCEEEeec---CC
Confidence            357888876444332 22222  4578889999999998876432          11389999999876654332   23


Q ss_pred             CcEEEEEEccCCCEEEEE-ecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCC
Q 012699          294 PAITSLCFNHNGKILAAS-AVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQ  367 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~  367 (458)
                      ..+.+++|+|+|+.|+.. +.++  .|++||+.+++. ..+..+........|+|+|+.|+..+. ++  .|.++|+.+.
T Consensus       234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            446678999999877654 4343  589999887654 344445555567899999998876654 33  5777777654


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  444 (458)
                      +....          ...........|+|+|++|+.++.++   .|+++|+.+... ..+. ........+|+|+++.|+
T Consensus       313 ~~~~l----------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~~~~~~p~~spdg~~l~  380 (417)
T TIGR02800       313 EVRRL----------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT-DTGLDESPSFAPNGRMIL  380 (417)
T ss_pred             CEEEe----------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc-CCCCCCCceECCCCCEEE
Confidence            32111          11223456789999999999988765   788999877432 2222 222345678999999888


Q ss_pred             EecCCC
Q 012699          445 TGSADH  450 (458)
Q Consensus       445 s~~~dg  450 (458)
                      ..+.++
T Consensus       381 ~~~~~~  386 (417)
T TIGR02800       381 YATTRG  386 (417)
T ss_pred             EEEeCC
Confidence            776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.6e-11  Score=114.12  Aligned_cols=214  Identities=14%  Similarity=0.174  Sum_probs=136.5

Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .|.++|.+.+.... +....  ..+....|+|+++.++..+....          ...|.+||+.+++.......   ..
T Consensus       180 ~l~~~d~~g~~~~~-l~~~~--~~~~~p~wSpDG~~la~~s~~~~----------~~~l~~~~l~~g~~~~l~~~---~g  243 (430)
T PRK00178        180 TLQRSDYDGARAVT-LLQSR--EPILSPRWSPDGKRIAYVSFEQK----------RPRIFVQNLDTGRREQITNF---EG  243 (430)
T ss_pred             EEEEECCCCCCceE-EecCC--CceeeeeECCCCCEEEEEEcCCC----------CCEEEEEECCCCCEEEccCC---CC
Confidence            47777877654332 22222  46788999999999887664321          13799999998776553322   23


Q ss_pred             cEEEEEEccCCCEEEE-EecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCCC
Q 012699          295 AITSLCFNHNGKILAA-SAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQG  368 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~  368 (458)
                      .....+|+|+|+.|+. ...+|  .|+++|+.+++. ..+..+........|+|||+.|+..+. ++  .|.++|+.++.
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3557899999998874 44444  688899987764 345555556677899999998776654 33  47777776553


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-c--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-V--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      ......          .........|+|||++|+..+.. +  .|.++|+.++... . ..+........|+|+|++++.
T Consensus       323 ~~~lt~----------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~-lt~~~~~~~p~~spdg~~i~~  390 (430)
T PRK00178        323 AERVTF----------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-I-LTDTSLDESPSVAPNGTMLIY  390 (430)
T ss_pred             EEEeec----------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-E-ccCCCCCCCceECCCCCEEEE
Confidence            221110          01123457899999999887753 2  5888898876432 2 212222335689999998776


Q ss_pred             ecCC-Cc--EEEEeC
Q 012699          446 GSAD-HS--VQVMSL  457 (458)
Q Consensus       446 ~~~d-g~--v~iw~l  457 (458)
                      .+.+ |.  +.++++
T Consensus       391 ~~~~~g~~~l~~~~~  405 (430)
T PRK00178        391 ATRQQGRGVLMLVSI  405 (430)
T ss_pred             EEecCCceEEEEEEC
Confidence            5543 33  444443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.50  E-value=1.1e-11  Score=107.66  Aligned_cols=277  Identities=14%  Similarity=0.204  Sum_probs=189.8

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----------
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-----------  214 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------  214 (458)
                      -.-++..++|||.|.+|++.... -|.+|.-......    .......|..+.|+ +++.+|.+=+..+           
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l----~~~~~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKL----VRFRHPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhhe----eeeecCCceecccC-cccceeeeeccCCccChhhccCCc
Confidence            45578899999999999987664 4889987665422    22335678889999 7888888854433           


Q ss_pred             ----cEEEEEcCCCceeeeccCCCCCCcee-eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699          215 ----GIKAWNVDAKRVVCDLNTTDAFPSVL-DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL  289 (458)
Q Consensus       215 ----~i~~wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~  289 (458)
                          .+.+||+.++..+..+.........+ -+.|+-+.++++-...+              .+.++++ +..... ...
T Consensus       105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~--------------sl~i~e~-t~n~~~-~p~  168 (561)
T COG5354         105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS--------------SLYIHEI-TDNIEE-HPF  168 (561)
T ss_pred             cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC--------------eEEEEec-CCcccc-Cch
Confidence                59999999999998888765432244 67788888877665443              8999996 322211 111


Q ss_pred             -CCCCCcEEEEEEccCC--CEEEE-----EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec-------
Q 012699          290 -GEDPPAITSLCFNHNG--KILAA-----SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG-------  354 (458)
Q Consensus       290 -~~~~~~i~~~~~~~~~--~~l~~-----~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------  354 (458)
                       .-....+....|+|.+  ..|+.     ...++.+++|.+..+..+.+..-....=..+.|++.|++|..--       
T Consensus       169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn  248 (561)
T COG5354         169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN  248 (561)
T ss_pred             hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence             1113568889999963  34443     45678999999987766655443344445788999998776321       


Q ss_pred             ----CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccCCCC
Q 012699          355 ----SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTLPHG  428 (458)
Q Consensus       355 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~~h~  428 (458)
                          .+..++++++.......          .....++|..++|.|.++.+++.++  .-.+.++|+++.   .++....
T Consensus       249 KsyfgesnLyl~~~~e~~i~V----------~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe  315 (561)
T COG5354         249 KSYFGESNLYLLRITERSIPV----------EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPE  315 (561)
T ss_pred             cceeccceEEEEeecccccce----------eccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCC
Confidence                13557788877432211          1145678999999999998887763  567888998876   3444445


Q ss_pred             CcEEEEEECCCCCeEEEecCC---CcEEEEeC
Q 012699          429 AAITTVDWHPTLPMFLTGSAD---HSVQVMSL  457 (458)
Q Consensus       429 ~~v~~~~~~~~~~~l~s~~~d---g~v~iw~l  457 (458)
                      ..=+.+.|+|.+++++.++-|   |.+-+|+.
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEecc
Confidence            566778889999988887765   56777764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.3e-11  Score=111.70  Aligned_cols=218  Identities=13%  Similarity=0.139  Sum_probs=132.3

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE--EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV--SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      ..|.+.|.+.+.... +....  .......|+|+|+.++  ..+...          +...|.+.++.+++........+
T Consensus       165 ~~l~~~d~dG~~~~~-lt~~~--~~~~sP~wSPDG~~~~~~y~S~~~----------g~~~I~~~~l~~g~~~~lt~~~g  231 (428)
T PRK01029        165 GELWSVDYDGQNLRP-LTQEH--SLSITPTWMHIGSGFPYLYVSYKL----------GVPKIFLGSLENPAGKKILALQG  231 (428)
T ss_pred             ceEEEEcCCCCCceE-cccCC--CCcccceEccCCCceEEEEEEccC----------CCceEEEEECCCCCceEeecCCC
Confidence            367777776655433 22222  3567789999997532  222211          11488899998877665544333


Q ss_pred             CCCcEEEEEEccCCCEEEEEec-CC----eEEEEeCCCC---ceeeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEE
Q 012699          292 DPPAITSLCFNHNGKILAASAV-DG----MIHMFDMSAG---LQITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEW  362 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw  362 (458)
                         .....+|+|||+.|+..+. +|    .+..|++..+   +.......+.......+|+|||+.|+..+ .+|...+|
T Consensus       232 ---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        232 ---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             ---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence               3456899999998886553 22    3444676642   33333223233456789999999877665 46655555


Q ss_pred             ec--cCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699          363 SL--QNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDW  436 (458)
Q Consensus       363 d~--~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~  436 (458)
                      .+  ... .....      +   ......+....|||||+.|+..+.+   ..|++||+.+++. ..+......+....|
T Consensus       309 ~~~~~~~g~~~~~------l---t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~w  378 (428)
T PRK01029        309 IMQIDPEGQSPRL------L---TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSW  378 (428)
T ss_pred             EEECcccccceEE------e---ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEE
Confidence            44  321 11110      0   0122345678999999999877653   4699999987754 233333346778999


Q ss_pred             CCCCCeEEEe-cC--CCcEEEEeC
Q 012699          437 HPTLPMFLTG-SA--DHSVQVMSL  457 (458)
Q Consensus       437 ~~~~~~l~s~-~~--dg~v~iw~l  457 (458)
                      +|||+.|+.. ..  ...|.+|++
T Consensus       379 SpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        379 AIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEEC
Confidence            9999977643 32  345777775

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.2e-11  Score=112.00  Aligned_cols=282  Identities=12%  Similarity=0.185  Sum_probs=182.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      .-+++.||.+.|.-+.|+.+.+.|-|...+|.|.+|-+-.+............+-|.+++|+ .++..+.....||.|.+
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEE
Confidence            34578999999999999999999999999999999998887765444444556789999999 88999999999999988


Q ss_pred             EEcCCCceeee-ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-----eEEee----
Q 012699          219 WNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-----MTVLP----  288 (458)
Q Consensus       219 wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-----~~~~~----  288 (458)
                      =.++.++.-.. ++.    .....+.|++|...++.+-.+             |.+.+||.+..-.     .....    
T Consensus       142 GsvdGNRIwgKeLkg----~~l~hv~ws~D~~~~Lf~~an-------------ge~hlydnqgnF~~Kl~~~c~Vn~tg~  204 (1189)
T KOG2041|consen  142 GSVDGNRIWGKELKG----QLLAHVLWSEDLEQALFKKAN-------------GETHLYDNQGNFERKLEKDCEVNGTGI  204 (1189)
T ss_pred             Eeeccceecchhcch----heccceeecccHHHHHhhhcC-------------CcEEEecccccHHHhhhhceEEeeeee
Confidence            77776543211 111    124568899998887777666             5899998764211     11111    


Q ss_pred             cCCCCCcEEEEEEc--------cCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--
Q 012699          289 LGEDPPAITSLCFN--------HNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDG--  357 (458)
Q Consensus       289 ~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--  357 (458)
                      +...+..|..+.|.        |+...|+++..+|.+.+-.-.+ ..++. +. ..-.+..+.|+++|..|+.++.+.  
T Consensus       205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv-~d-tgm~~vgakWnh~G~vLAvcG~~~da  282 (1189)
T KOG2041|consen  205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV-VD-TGMKIVGAKWNHNGAVLAVCGNDSDA  282 (1189)
T ss_pred             ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE-Ee-cccEeecceecCCCcEEEEccCcccc
Confidence            11122235556664        4778999999999988876544 33332 22 235688899999999999998753  


Q ss_pred             -------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----------------------
Q 012699          358 -------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----------------------  407 (458)
Q Consensus       358 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----------------------  407 (458)
                             .|.+|..-          .+...........|++++|-..|-.+|.+-..                       
T Consensus       283 ~~~~d~n~v~Fysp~----------G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~  352 (1189)
T KOG2041|consen  283 DEPTDSNKVHFYSPY----------GHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYV  352 (1189)
T ss_pred             cCccccceEEEeccc----------hhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEE
Confidence                   23333322          11222223445667888887766555543221                       


Q ss_pred             --------ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          408 --------VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       408 --------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                              -.|.+||..+.+...+...   +..+++|..+--.|++-..||.+.
T Consensus       353 y~~~e~p~y~i~Fwdtk~nek~vK~V~---~~~~~a~~~ehCvL~~~~d~~~i~  403 (1189)
T KOG2041|consen  353 YQKEELPQYGIMFWDTKTNEKTVKTVT---HFENMAFYREHCVLINRQDDGVIP  403 (1189)
T ss_pred             EccCCCcceEEEEEecccChhhhhhhc---ceeehheecccEEEEeccccCCCc
Confidence                    1345566655544333332   344566665555666656666554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2e-11  Score=112.13  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=146.2

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCe--EEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeee
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDR--LLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKC  244 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  244 (458)
                      ..|.+.|.+......   ..........-.|+|+...  ++++...+|  .|.+.++.+++........   .......|
T Consensus       165 ~~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~w  238 (428)
T PRK01029        165 GELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTF  238 (428)
T ss_pred             ceEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEE
Confidence            356667776654432   1123345567789954333  333444444  5778888877654433222   23456899


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC---ceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCe--EE
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW---KAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGM--IH  318 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~  318 (458)
                      +|||+.++........        .+..+..|++..+   +......  .........+|+|||+.|+..+ .+|.  |+
T Consensus       239 SPDG~~Laf~s~~~g~--------~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        239 SPRKKLLAFISDRYGN--------PDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCCCEEEEEECCCCC--------cceeEEEeecccCCCCcceEeec--CCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence            9999988876542100        0124455777653   2222221  2222346789999999887665 4564  45


Q ss_pred             EEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          319 MFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       319 v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      ++++.. +.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.....          .....+....|
T Consensus       309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----------~~~~~~~~p~w  378 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----------TSPENKESPSW  378 (428)
T ss_pred             EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----------CCCCCccceEE
Confidence            555542 23344455555667889999999988876543   36899999876432211          11123466899


Q ss_pred             ccCCCEEEEEeC---CccEEEEEccCCCcccccCCCCCcEEEEEECCCC
Q 012699          395 DVNGRRLLVTSG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL  440 (458)
Q Consensus       395 s~~g~~l~~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~  440 (458)
                      +|||+.|+....   ...++++++.+++. ..+....+.+...+|+|-.
T Consensus       379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        379 AIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceecCCC
Confidence            999998886543   35688889877643 3333444567788888754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.49  E-value=4.8e-10  Score=111.32  Aligned_cols=358  Identities=13%  Similarity=0.115  Sum_probs=208.4

Q ss_pred             cceeeeeeccCCCceeeeeecCcceEEecccccccc---------ccce--eeeec------------------------
Q 012699           25 ETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA---------TTAT--HMGSA------------------------   69 (458)
Q Consensus        25 ~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~---------~~~~--~~~~~------------------------   69 (458)
                      ..|.|+++ |||+++||..+.++++.+.......+.         +.-.  ..+|.                        
T Consensus       121 ~GI~a~~W-SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  121 SGILAASW-SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CcEEEEEE-CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            45999999 999999999999999888665433222         0000  01111                        


Q ss_pred             --------cCCceeeeeCCccceeEeeccC------CCcccccccccccCCc-ccceeeeccCCCCcCCCcceeccCCC-
Q 012699           70 --------EMGQTWASSRPALSRFATNMSG------NDSISPSKLEFEDVGA-GDIIQMFNDGLYTENGRDAQGEEDFP-  133 (458)
Q Consensus        70 --------~~~~~~~~~~~~~~~~l~~~~~------~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-  133 (458)
                              .+.....+.-.+|++|+|+.+.      -+.+++|+-+..-... ......-+..+|.|.|..+|+....+ 
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~  279 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD  279 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence                    1223344555567788777764      2567777754211111 11122235668999999999876521 


Q ss_pred             --eeee---------eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc-ccccCCCceEEEEEec
Q 012699          134 --EVKV---------DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWEC  201 (458)
Q Consensus       134 --~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~  201 (458)
                        .+.+         +..-.+......|..+.|++|+..||..-.|. |.+|-..+.....+. ........+..+.|+|
T Consensus       280 ~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  280 RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence              1111         22222234567899999999999999977665 999987765532221 2222334456699998


Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      .+...|...+.+|.+..++..-.......             ..|+.. .++....              ..+.+-.++.
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~-------------~~~~D~g~vaVIDG--------------~~lllTpf~~  411 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPG-------------SSPNDNGTVAVIDG--------------NKLLLTPFRR  411 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEEEEecCC-------------CCccCceEEEEEeC--------------CeEEEecccc
Confidence            88888888888888877665421111100             011111 2222222              2666666654


Q ss_pred             CceeE---EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--------eeeee----------CCCCCeE
Q 012699          281 WKAMT---VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--------ITGWP----------AHDSAIS  339 (458)
Q Consensus       281 ~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--------~~~~~----------~~~~~v~  339 (458)
                      ....+   .+.+ .-+..|.+++|++++..+++-..||.|.+|.......        ...+.          .....+.
T Consensus       412 a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (928)
T PF04762_consen  412 AVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR  490 (928)
T ss_pred             cCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence            33221   1111 1246799999999988899999999999998543211        11111          1234678


Q ss_pred             EEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          340 SILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       340 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .++|..+...++....+   ..+.++++.........      .........+..+...++...++.-..+|.+...+..
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~  564 (928)
T PF04762_consen  491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASV------ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSD  564 (928)
T ss_pred             EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeE------EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecC
Confidence            88887777666655554   57888887543321111      1111223345555555555556666778877766655


Q ss_pred             CC
Q 012699          417 GH  418 (458)
Q Consensus       417 ~~  418 (458)
                      ..
T Consensus       565 ~~  566 (928)
T PF04762_consen  565 GE  566 (928)
T ss_pred             CC
Confidence            44

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.3e-11  Score=112.57  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE---------ecCCCeEEEEeccCCCeeEEeecCC
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS---------LGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---------~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      ++++|+..|+|.++|+.++.....+..|...|.++.|-...+++-.         ++.-+.+.+-|++++...       
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-------  511 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-------  511 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-------
Confidence            6889999999999999999999999999999999999766544322         222345778888876322       


Q ss_pred             ccc-CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          378 RFC-DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       378 ~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      .+. .......+|..+..|..|+||+....+.-+.+||+++
T Consensus       512 ~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt  552 (1062)
T KOG1912|consen  512 RFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT  552 (1062)
T ss_pred             ccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence            222 1235667899999999999999999999999999854

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.47  E-value=5.6e-10  Score=97.44  Aligned_cols=240  Identities=13%  Similarity=0.132  Sum_probs=143.7

Q ss_pred             eCCCCCEEEEEeC----------CCcEEEEecCCCCCCCccccccC-----CCceEEEEEecCCCeEEEEEc-C-CCcEE
Q 012699          155 FSSSGNNIASASV----------DGTVRIWTYDSSTPASRNATIYC-----GTEIMSLEWECKSDRLLLIGT-A-DGGIK  217 (458)
Q Consensus       155 ~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~-~-dg~i~  217 (458)
                      ++||++.|+.+..          +..|.+||..+.+..........     ......++++ +++++|+... . +..+.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecCCCCCEEE
Confidence            8999998877654          78999999999887643332111     2234467888 6777777665 3 68999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-Cce-eEEeec-CCCCC
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKA-MTVLPL-GEDPP  294 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~-~~~~~~-~~~~~  294 (458)
                      +.|+.+++.+.++.....   ..-...+++...+.+.  |             |......+.+ ++. ...... .....
T Consensus       132 VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~~~~~--D-------------g~~~~v~~d~~g~~~~~~~~vf~~~~~  193 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDC---YHIFPTANDTFFMHCR--D-------------GSLAKVGYGTKGNPKIKPTEVFHPEDE  193 (352)
T ss_pred             EEECCCCcEEEEEeCCCC---cEEEEecCCccEEEee--c-------------CceEEEEecCCCceEEeeeeeecCCcc
Confidence            999999999888776431   1111111111111111  1             1222211111 110 111110 01000


Q ss_pred             cE-EEEEEcc-CCCEEEEEecCCeEEEEeCCCC-----ceeeeeeC-------CCCCeEEEEEcCCCCEEEEec------
Q 012699          295 AI-TSLCFNH-NGKILAASAVDGMIHMFDMSAG-----LQITGWPA-------HDSAISSILFGPDETSIFSLG------  354 (458)
Q Consensus       295 ~i-~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~------  354 (458)
                      ++ ..-.|.+ +|+++++... |.|++.|+...     +....+..       ..+.+.-++++|+++.++...      
T Consensus       194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~  272 (352)
T TIGR02658       194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW  272 (352)
T ss_pred             ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence            00 0014455 8888887665 99999996442     22222211       223445599999999888743      


Q ss_pred             ----CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEEEccCCCccccc
Q 012699          355 ----SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       355 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~~~~~~~~~~~~  424 (458)
                          ..+.|.++|..+.+......          ....+..++++||++ +|++.+ .++.|.++|..+.+.+..+
T Consensus       273 thk~~~~~V~ViD~~t~kvi~~i~----------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       273 THKTASRFLFVVDAKTGKRLRKIE----------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             cccCCCCEEEEEECCCCeEEEEEe----------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                22579999998876554332          234588999999999 888777 4688999999988665544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=3.7e-13  Score=118.02  Aligned_cols=249  Identities=13%  Similarity=0.130  Sum_probs=163.6

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC---CceEEEEEecCCCeEEEEE-cCCC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG---TEIMSLEWECKSDRLLLIG-TADG  214 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~-~~dg  214 (458)
                      +..+++.|+.+|..+.|-.+-++++++  ||-|.+||.--+++..........   +.|.++.-  -+..+++++ +...
T Consensus       776 CQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeS  851 (1034)
T KOG4190|consen  776 CQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAES  851 (1034)
T ss_pred             eeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc--Ccchheeeeccchh
Confidence            566788999999999999998888875  789999997666554322222222   23444421  144455555 6788


Q ss_pred             cEEEEEcCCCceeeeccCCC---CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTD---AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      +++++|.+..+....++...   ....+.+++..+.|+.++.+-.+             |+|.+.|.++++.+.....  
T Consensus       852 TVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn-------------Gci~~LDaR~G~vINswrp--  916 (1034)
T KOG4190|consen  852 TVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN-------------GCIAILDARNGKVINSWRP--  916 (1034)
T ss_pred             hheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC-------------CcEEEEecCCCceeccCCc--
Confidence            99999999988777665542   22458899999999999888776             6999999999988775531  


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEE-EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHM-FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      -......++ .|..+.|+....|.++.+ |....+....+.+....+..-+.  .-|..|++......+.+|.-......
T Consensus       917 mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ha  993 (1034)
T KOG4190|consen  917 MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAELHA  993 (1034)
T ss_pred             ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhhhh
Confidence            111222232 355667777778888888 88777765555544443332221  23566777777777888753321111


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      .   .......+....+..++++.-|-..-++.|++.|.|.+
T Consensus       994 ~---stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  994 E---STITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             h---hhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            1   11112234456667788888887777777888887765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.47  E-value=7.7e-13  Score=119.76  Aligned_cols=289  Identities=15%  Similarity=0.229  Sum_probs=190.1

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC-CeEEEEEcCCCcEEEEEcCCC-
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS-DRLLLIGTADGGIKAWNVDAK-  224 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~-  224 (458)
                      .+++..+..+|.|+-+|.++.-| +.+-|+.......+.......-.+..+.|+|.. ..+-++......-.+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788899999999999998877 455676654433322222223457777887532 234444445555667887532 


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  303 (458)
                      .....+-.+.|...++++.|+|+.+ .+++++.+.             .+..||+++.....-.. ..-......++|+.
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt-------------~vh~wd~rSp~~p~ys~-~~w~s~asqVkwny  168 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT-------------YVHAWDMRSPHRPFYST-SSWRSAASQVKWNY  168 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccc-------------cceeeeccCCCcceeee-ecccccCceeeecc
Confidence            2233444566668899999999887 566677664             99999999855433222 22234567789987


Q ss_pred             CCCEEEEEecCCeEEEEeCCCC-ceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          304 NGKILAASAVDGMIHMFDMSAG-LQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      ....+.+.+....|++||++.+ .++..+++|...|+.++|.. ....+.+++.|++|++||..+....-        ..
T Consensus       169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~--------~~  240 (1081)
T KOG0309|consen  169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES--------KR  240 (1081)
T ss_pred             cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc--------ce
Confidence            5555555567778999999874 67888899999999999976 33468899999999999998642211        11


Q ss_pred             CCCCCCceeEEEEccCCC--EEEEEeCCccEEEEEcc----------CCCcccccCCCCCcEEEEEECCCC--------C
Q 012699          382 PESSKSCRHEMALDVNGR--RLLVTSGSVRAPIYQVR----------GHASGMRTLPHGAAITTVDWHPTL--------P  441 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~--~l~~~~~~~~i~i~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~--------~  441 (458)
                      ......++..-.+-|-|+  ++.---+++.+.+++-+          ....+..+.||.+.|..+.|-..+        +
T Consensus       241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r  320 (1081)
T KOG0309|consen  241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR  320 (1081)
T ss_pred             eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence            123344566666666443  33322233344444332          233456677999999888874422        2


Q ss_pred             --eEEEecCCCcEEEEeCC
Q 012699          442 --MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       442 --~l~s~~~dg~v~iw~l~  458 (458)
                        .|+|-+.|..+|+|-++
T Consensus       321 dfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  321 DFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             ceeEEEeecCCceEeeecc
Confidence              79999999999999874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=6e-11  Score=109.90  Aligned_cols=214  Identities=15%  Similarity=0.104  Sum_probs=132.1

Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .|.++|........ +....  ..+....|+|+++.++..+...          +...|.++|+.+++........   .
T Consensus       199 ~l~i~d~dG~~~~~-l~~~~--~~~~~p~wSPDG~~La~~s~~~----------g~~~L~~~dl~tg~~~~lt~~~---g  262 (448)
T PRK04792        199 QLMIADYDGYNEQM-LLRSP--EPLMSPAWSPDGRKLAYVSFEN----------RKAEIFVQDIYTQVREKVTSFP---G  262 (448)
T ss_pred             EEEEEeCCCCCceE-eecCC--CcccCceECCCCCEEEEEEecC----------CCcEEEEEECCCCCeEEecCCC---C
Confidence            56677776554322 22222  4678899999999888765432          1137999999887764433222   2


Q ss_pred             cEEEEEEccCCCEEEE-EecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCCC
Q 012699          295 AITSLCFNHNGKILAA-SAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQG  368 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~  368 (458)
                      .....+|+|||+.|+. .+.+|  .|+++|+.+++. ..+..+.......+|+|||+.|+..+. ++  .|.++|+.+++
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3457899999998865 45556  488889887654 444555556678899999998876554 44  46666666543


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-c--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-V--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      ......          ........+|+|||++|+..+.+ +  .|.++|+.++... .+... .......|+|+|+.|+.
T Consensus       342 ~~~Lt~----------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~  409 (448)
T PRK04792        342 VSRLTF----------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIY  409 (448)
T ss_pred             EEEEec----------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEE
Confidence            221110          11112346899999999887653 3  4566777665422 22211 12234589999997776


Q ss_pred             ecC-CCc--EEEEeC
Q 012699          446 GSA-DHS--VQVMSL  457 (458)
Q Consensus       446 ~~~-dg~--v~iw~l  457 (458)
                      .+. +|.  +.++++
T Consensus       410 ~~~~~g~~~l~~~~~  424 (448)
T PRK04792        410 STTYQGKQVLAAVSI  424 (448)
T ss_pred             EEecCCceEEEEEEC
Confidence            543 443  555553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=1.8e-11  Score=110.82  Aligned_cols=280  Identities=13%  Similarity=0.189  Sum_probs=194.6

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-------------ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-------------RNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      .....|+.|+.+..++|+|+.||.+++-.+.+...-.             ......|...|..+.|+ .+.+.|-+...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCC
Confidence            3457899999999999999999999999876543211             11234567889999999 788889999999


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      |.|.+|-+-.+.....+......+.|.+++|+.+|..+...-.|+             .|.+=.+...+... -.+.+. 
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG-------------avIVGsvdGNRIwg-KeLkg~-  157 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG-------------AVIVGSVDGNRIWG-KELKGQ-  157 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC-------------CEEEEeeccceecc-hhcchh-
Confidence            999999998887766665555557899999999999998888873             44444333222111 011111 


Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-------eeee----eeCCCCCeEEEEEc--------CCCCEEEEec
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-------QITG----WPAHDSAISSILFG--------PDETSIFSLG  354 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~----~~~~~~~v~~~~~~--------~~~~~l~~~~  354 (458)
                       ....+.|++|.+.++.+-.+|.+.+||....-       +...    +......|..+.|.        |+...|+.+-
T Consensus       158 -~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  158 -LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             -eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence             24568899999988888889999999965321       1011    11112235556663        4788999999


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---------ccEEEEEccCCCcccccC
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---------VRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------~~i~i~~~~~~~~~~~~~  425 (458)
                      ..|.+.+..-.+...+...          .....+....|+++|..||+++.+         +.|++|..-+. ....+.
T Consensus       237 ~nGr~QiMR~eND~~Pvv~----------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~-i~gtlk  305 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVV----------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH-IVGTLK  305 (1189)
T ss_pred             cCceehhhhhcCCCCCeEE----------ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh-heEEEe
Confidence            9999999877765544332          223457889999999999998864         35666665443 233333


Q ss_pred             CCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          426 PHGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       426 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      .....|++++|-..|-.+|.+- |+.|.+=
T Consensus       306 vpg~~It~lsWEg~gLriA~Av-dsfiyfa  334 (1189)
T KOG2041|consen  306 VPGSCITGLSWEGTGLRIAIAV-DSFIYFA  334 (1189)
T ss_pred             cCCceeeeeEEcCCceEEEEEe-cceEEEE
Confidence            4567899999988777666553 5566553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.44  E-value=1.1e-09  Score=94.92  Aligned_cols=175  Identities=20%  Similarity=0.177  Sum_probs=129.3

Q ss_pred             eCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-cEEEEEcCCCceeeeccC
Q 012699          155 FSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       155 ~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~  232 (458)
                      |++ +|.+++..|. |...|.+...+..+    ...+...|.-..+. .+++-++.|..|| .+-+||.++++.......
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~i----qv~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~  400 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSI----QVGKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD  400 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeE----EcCCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence            444 6888888875 66777665444332    34455667777776 5566889999999 899999999886554433


Q ss_pred             CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699          233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (458)
                      .   +.|.++..+++|+.++.+...             ..+.+.|+.++.....-+  ...+-|+.++|+|+++++|.+-
T Consensus       401 l---g~I~av~vs~dGK~~vvaNdr-------------~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYaf  462 (668)
T COG4946         401 L---GNIEAVKVSPDGKKVVVANDR-------------FELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAF  462 (668)
T ss_pred             c---cceEEEEEcCCCcEEEEEcCc-------------eEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEec
Confidence            3   679999999999988887765             489999999987765433  3456799999999999999876


Q ss_pred             cCC----eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec
Q 012699          313 VDG----MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       313 ~dg----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  354 (458)
                      -+|    .|++||+..++.... ....+.=.+-+|.|++++|.--+
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEe
Confidence            655    799999998776543 33344445678999999887554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.44  E-value=4.9e-10  Score=113.45  Aligned_cols=248  Identities=14%  Similarity=0.162  Sum_probs=161.0

Q ss_pred             EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC------------CCCceeeeeecCCCCeEEEeecccCCCC
Q 012699          195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD------------AFPSVLDLKCSPVEPIFVSAAASRRYGS  262 (458)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      ..+++++.++.++++-..++.|+++|.... .+..+....            .......+++.+++..++.+....    
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n----  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN----  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC----
Confidence            457787556778888888899999998644 333332211            112467889998887666655433    


Q ss_pred             cceeeccceeEEEEECCCCceeEEeecCCC---------------CCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc
Q 012699          263 SNIYSWGFASLTVWNMKTWKAMTVLPLGED---------------PPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGL  326 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~  326 (458)
                              +.|+.+|+.++... .+...+.               -.....++++| ++.++++.+.++.|++||..++.
T Consensus       646 --------~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        646 --------HALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             --------ceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence                    48999998775432 2211100               11246799999 55566666778899999987764


Q ss_pred             eeeeeeCC---------------CCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCCCeeEEeecC-------CcccCC-
Q 012699          327 QITGWPAH---------------DSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNC-------SRFCDP-  382 (458)
Q Consensus       327 ~~~~~~~~---------------~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~-  382 (458)
                      .. .+.+.               -.....|+++|+++.| ++-+.++.|++||+.++.........       ..+... 
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            32 22111               1235679999999854 45566789999999875432211000       000000 


Q ss_pred             ----CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--------------CCCCcEEEEEECCCCCeEE
Q 012699          383 ----ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--------------PHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       383 ----~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~  444 (458)
                          ...-.....++++++|+++++-..+++|++||..++... .+.              +.-..+..++++++|++++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence                011224568999999998888888999999999765322 111              1223678999999999999


Q ss_pred             EecCCCcEEEEeCC
Q 012699          445 TGSADHSVQVMSLS  458 (458)
Q Consensus       445 s~~~dg~v~iw~l~  458 (458)
                      +-+.++.|++||++
T Consensus       875 aDt~Nn~Irvid~~  888 (1057)
T PLN02919        875 ADTNNSLIRYLDLN  888 (1057)
T ss_pred             EECCCCEEEEEECC
Confidence            98999999999974

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=1.2e-12  Score=129.29  Aligned_cols=199  Identities=14%  Similarity=0.230  Sum_probs=153.8

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      ++.|-..|.++.-+|...+.+||+.||.|++|....++.+........ ..|+.+.|+ ..|+.+..+..||.+.+|.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFN-HQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhc-ccCCceeeeccCCceeecccC
Confidence            345667788998899999999999999999999988877654444444 789999999 778889999999999999987


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                       .+.....+.+.  ....++.|-.  ..+++++...          .++.+.+||..-......+. ..|...++++++-
T Consensus      2282 -pk~~~s~qchn--k~~~Df~Fi~--s~~~tag~s~----------d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHN--KALSDFRFIG--SLLATAGRSS----------DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYA 2345 (2439)
T ss_pred             -CcceeccccCC--ccccceeeee--hhhhccccCC----------CCCcccchhcccCcccceee-eecCCCceEEEEc
Confidence             44444444443  4566666655  4555554432          22699999976544333333 5788899999999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      |..++|++|+.+|.|++||++..+.++.++.         +. ...++++++..|.++||++.....
T Consensus      2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred             CcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence            9999999999999999999999888887765         44 566999999999999999987643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.42  E-value=1.3e-08  Score=88.35  Aligned_cols=215  Identities=10%  Similarity=0.046  Sum_probs=146.7

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeee-cc--CC---CCCCceeeee----ec-CCCCeEEEeecccCCCCcceeeccc
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCD-LN--TT---DAFPSVLDLK----CS-PVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~--~~---~~~~~v~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      .++..++.. ..|.|.+||.++...... +.  ..   .....+.-..    |+ .+|.+++..+.              
T Consensus       276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR--------------  340 (668)
T COG4946         276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR--------------  340 (668)
T ss_pred             CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--------------
Confidence            455555543 457899999987654321 11  00   0000011111    11 24566666665              


Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-MIHMFDMSAGLQITGWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (458)
                      |...+.+...+-.++.    ++...|.-..+..++.-++.|..|| .+-|||.++++ +..+...-+.|.++..+|+|++
T Consensus       341 GkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~  415 (668)
T COG4946         341 GKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKK  415 (668)
T ss_pred             CcEEEECCCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcE
Confidence            4777776665544442    3456688888887888899999999 89999998776 4555667788999999999999


Q ss_pred             EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc----cEEEEEccCCCcccccC
Q 012699          350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV----RAPIYQVRGHASGMRTL  425 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~----~i~i~~~~~~~~~~~~~  425 (458)
                      ++.+.....+.+.|+.++......         .....-|+.+.|+|+++++|.+--+|    .|+++|+.+++.. ...
T Consensus       416 ~vvaNdr~el~vididngnv~~id---------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy-~vT  485 (668)
T COG4946         416 VVVANDRFELWVIDIDNGNVRLID---------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY-DVT  485 (668)
T ss_pred             EEEEcCceEEEEEEecCCCeeEec---------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE-Eec
Confidence            999999999999999987543221         13445689999999999999988775    6899999987433 333


Q ss_pred             CCCCcEEEEEECCCCCeEEEe
Q 012699          426 PHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       426 ~h~~~v~~~~~~~~~~~l~s~  446 (458)
                      ...+.=.+-+|.||+++|.--
T Consensus       486 T~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             CCcccccCcccCCCCcEEEEE
Confidence            333344567899999976644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=1.7e-10  Score=102.34  Aligned_cols=201  Identities=10%  Similarity=0.133  Sum_probs=155.2

Q ss_pred             cCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-CceeeeeecCCCCeEEEeeccc------------CCCCcceee
Q 012699          201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-PSVLDLKCSPVEPIFVSAAASR------------RYGSSNIYS  267 (458)
Q Consensus       201 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  267 (458)
                      |+...+++....||.+++||...++....+....+. +...+..|.     +.....-.            .....++.+
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccchHHHHhHHHHhhccCCceEEEee
Confidence            466788999999999999999999887776654332 234444443     11111100            012234455


Q ss_pred             ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC
Q 012699          268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE  347 (458)
Q Consensus       268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  347 (458)
                      ...|.|.+|+...++....+....|.+.|+++.++.+-..|.+++.|+.+..|+....+.++.++.....+.+++.+||+
T Consensus        77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            56689999999999999999888999999999999998999999999999999999999999999989999999999999


Q ss_pred             CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC-----CCEEEEEe-CCccEEEEEccC
Q 012699          348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN-----GRRLLVTS-GSVRAPIYQVRG  417 (458)
Q Consensus       348 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~-~~~~i~i~~~~~  417 (458)
                      ..+++++  +.|++||+++.+....         ..+|.+.|.+++|-.+     |.+++++. .+..+.+|-+..
T Consensus       157 ~~l~~as--~~ik~~~~~~kevv~~---------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKEVVIT---------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CEEEecc--ceEEEEEccCceEEEE---------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999886  5799999998654432         3478889999999887     66666544 345577776654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.40  E-value=2.9e-08  Score=98.93  Aligned_cols=411  Identities=11%  Similarity=0.131  Sum_probs=230.3

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEe----cccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLS----TNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGN   92 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (458)
                      ....|..+.| -++...|+.+..+|.+.+.    +.......      ..|..++|+||...+++......-.+.+...+
T Consensus        74 ~~~~ivs~~y-l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   74 PNDKIVSFQY-LADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCCcEEEEEe-ccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            3467899999 8999988888999999988    44433221      56668889998666666544332222222111


Q ss_pred             CcccccccccccCCcccceeeecc---CCCCc-CCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeC-
Q 012699           93 DSISPSKLEFEDVGAGDIIQMFND---GLYTE-NGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASV-  167 (458)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-  167 (458)
                      - +.--.+...+.+....+.....   -.|.- .|+..+....++.+.......+. +...-..++|-.||+++|+.+. 
T Consensus       153 ~-i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  153 P-ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             E-EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence            0 0000111111111111111100   01211 11111111112222211122334 5556678999999999988764 


Q ss_pred             --C---CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCC--CCCC
Q 012699          168 --D---GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTT--DAFP  237 (458)
Q Consensus       168 --d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~--~~~~  237 (458)
                        .   ..+|||+-+ +.....  .....+--.+++|. |.|+++++...   ...|.+|.-+ |-....+...  ....
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~st--SE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQST--SEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEE  305 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEec--cccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCc
Confidence              2   579999865 332211  11112223567898 77888888765   3456667643 3322223222  2335


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccC-CCEEEEEecC
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHN-GKILAASAVD  314 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  314 (458)
                      .+..+.|++++..|+..-.+              .|.+|-..+....  +.+.+... ..+..+.|+|. ...|.+.+.+
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~--------------~vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~  370 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLED--------------RVQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSN  370 (928)
T ss_pred             eeeEEEECCCCCEEEEEecC--------------CceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecC
Confidence            79999999999999998765              7999998876533  33333322 33455999995 4457777766


Q ss_pred             CeEEEEeCC----CCc--------eeeeee-----------------------CCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699          315 GMIHMFDMS----AGL--------QITGWP-----------------------AHDSAISSILFGPDETSIFSLGSDGKI  359 (458)
Q Consensus       315 g~i~v~d~~----~~~--------~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i  359 (458)
                      |.+..++..    .+.        .+..+.                       .-..+|.+++|++++..+++-..||.+
T Consensus       371 g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l  450 (928)
T PF04762_consen  371 GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL  450 (928)
T ss_pred             CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence            766665532    110        011110                       124689999999998889999999999


Q ss_pred             EEEeccCCCee-----EEeecCCc----ccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCccc---cc
Q 012699          360 IEWSLQNQGQV-----LWTRNCSR----FCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGM---RT  424 (458)
Q Consensus       360 ~iwd~~~~~~~-----~~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~---~~  424 (458)
                      .+|........     ........    ..........+..++|..+..++++...+   ..+.++++.......   ..
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  530 (928)
T PF04762_consen  451 SIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS  530 (928)
T ss_pred             EEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE
Confidence            99986543221     00000000    11122235567889998888877776664   678888874432221   11


Q ss_pred             CCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          425 LPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       425 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ..-...+..+...++...++.-..||.+...+
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~  562 (928)
T PF04762_consen  531 TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS  562 (928)
T ss_pred             eccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence            22345566666666655455556677776443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.6e-11  Score=121.60  Aligned_cols=215  Identities=14%  Similarity=0.207  Sum_probs=167.4

Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      +.+.....++...-|..+.+.....-.    ...+.++.-+|...+.++++.|             |.+++|....++.+
T Consensus      2181 ~~~~~~n~~~~~~tq~~~~~~~~~k~~----v~~v~r~~sHp~~~~Yltgs~d-------------gsv~~~~w~~~~~v 2243 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIKHP----VENVRRMTSHPSDPYYLTGSQD-------------GSVRMFEWGHGQQV 2243 (2439)
T ss_pred             ccCCcccCCccccceecccceeEeecc----cCceeeecCCCCCceEEecCCC-------------ceEEEEeccCCCeE
Confidence            334444445555556555444332222    2458888889999999999988             69999999999998


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEE
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIE  361 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i  361 (458)
                      ..+...+. ..++.+.|+.+|+.+..+..||.+.+|... .++....+.|........|-.  ..+++++.   ++.+.+
T Consensus      2244 ~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~l 2319 (2439)
T KOG1064|consen 2244 VCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCL 2319 (2439)
T ss_pred             EEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccc
Confidence            88876555 889999999999999999999999999987 778888899999999999875  56776654   778999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      ||..-....        ......|...++++++-|..+.|++|+.+|.|++||++..+....+..         ++ ...
T Consensus      2320 wDtl~~~~~--------s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~ 2381 (2439)
T KOG1064|consen 2320 WDTLLPPMN--------SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TRE 2381 (2439)
T ss_pred             hhcccCccc--------ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhh
Confidence            997643221        111246888899999999999999999999999999987755443332         44 556


Q ss_pred             eEEEecCCCcEEEEeCC
Q 012699          442 MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       442 ~l~s~~~dg~v~iw~l~  458 (458)
                      ++++|+..|.++||+++
T Consensus      2382 ~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2382 YFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             eeeccCcccceEEEEcc
Confidence            89999999999999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=5.4e-09  Score=95.63  Aligned_cols=262  Identities=13%  Similarity=0.127  Sum_probs=157.6

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      ++..++.++.++.+..+|..+++......   ....+.+....  .+..++.++.+|.+..||.++++.+..........
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~---~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAK---LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeec---cCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence            45678888889999999998887653222   12222211111  23467778889999999999999877665432110


Q ss_pred             ce---eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC--c---EEEEEEcc--CCCE
Q 012699          238 SV---LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP--A---ITSLCFNH--NGKI  307 (458)
Q Consensus       238 ~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~---i~~~~~~~--~~~~  307 (458)
                      ..   ...... + ..++.+..+             |.+..+|.++++............  .   ...+.-+|  .+..
T Consensus       179 ~~~~~~sp~~~-~-~~v~~~~~~-------------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~  243 (377)
T TIGR03300       179 TLRGSASPVIA-D-GGVLVGFAG-------------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQ  243 (377)
T ss_pred             eecCCCCCEEE-C-CEEEEECCC-------------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCE
Confidence            00   011111 1 233443333             689999999988766543211100  0   00011111  3457


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      +++++.+|.++.||..+++.+......  ......  ..+..++.++.||.+..+|..+++.. +...  ...     ..
T Consensus       244 vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~--~~~-----~~  311 (377)
T TIGR03300       244 VYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKND--ELK-----YR  311 (377)
T ss_pred             EEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEE-Eccc--ccc-----CC
Confidence            888888999999999999877665421  111222  24568888889999999999876443 3221  000     00


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE-EEEEECCCCCeEEEecCCCcEEEE
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI-TTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      .......  .+..|++++.+|.++++|..+++...+...+...+ .+..+. ++ .|+.++.||.|..|
T Consensus       312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            1111111  46788999999999999999887766665444332 233333 33 58888999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=7.2e-09  Score=105.12  Aligned_cols=254  Identities=13%  Similarity=0.092  Sum_probs=155.4

Q ss_pred             EEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCcccccc------------CCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          151 SCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATIY------------CGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       151 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      ..++++++ ++.+++-+.++.|++||..+.... ......            .-.....+++++.++.++++-..++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788774 566777778889999997643211 100000            0123578889843334445555567899


Q ss_pred             EEEcCCCceeeeccCCC---------------CCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          218 AWNVDAKRVVCDLNTTD---------------AFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      ++|..++... ++....               .......++++|++ .++++...+             +.|++||..++
T Consensus       650 ~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~-------------~~I~v~d~~~g  715 (1057)
T PLN02919        650 EIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ-------------HQIWEYNISDG  715 (1057)
T ss_pred             EEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC-------------CeEEEEECCCC
Confidence            9998876532 221100               01234678999954 444444444             48999998776


Q ss_pred             ceeEEeecC-------C------CCCcEEEEEEccCCCEEE-EEecCCeEEEEeCCCCceeeee-------------eCC
Q 012699          282 KAMTVLPLG-------E------DPPAITSLCFNHNGKILA-ASAVDGMIHMFDMSAGLQITGW-------------PAH  334 (458)
Q Consensus       282 ~~~~~~~~~-------~------~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~-------------~~~  334 (458)
                      .... +...       +      .-.....++++|+++.|+ +-+.++.|++||+.++......             ..+
T Consensus       716 ~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~  794 (1057)
T PLN02919        716 VTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH  794 (1057)
T ss_pred             eEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence            5432 1110       0      112356799999998554 4455789999999875432111             000


Q ss_pred             --------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc-cc---CCCCCCCceeEEEEccCCCEEE
Q 012699          335 --------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-FC---DPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       335 --------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                              -.....++++++|..+++-+.++.|++||..+............ +.   .....-..+..++++++|++++
T Consensus       795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence                    11245889999999888888999999999976533221111000 00   0111223578899999999888


Q ss_pred             EEeCCccEEEEEccCCCc
Q 012699          403 VTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       403 ~~~~~~~i~i~~~~~~~~  420 (458)
                      +-+.+++|++||+.+...
T Consensus       875 aDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        875 ADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCEEEEEECCCCcc
Confidence            888899999999987643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.30  E-value=2.4e-08  Score=85.32  Aligned_cols=224  Identities=17%  Similarity=0.228  Sum_probs=147.1

Q ss_pred             EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec-CCCCeEEEeecccCCCCcceeeccceeE
Q 012699          195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS-PVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      .+..|.+.++.++++-...+.|..|+..++.... +...    ....+.+. +++.++++. ..              .+
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----~~~G~~~~~~~g~l~v~~-~~--------------~~   62 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----GPNGMAFDRPDGRLYVAD-SG--------------GI   62 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----SEEEEEEECTTSEEEEEE-TT--------------CE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----CCceEEEEccCCEEEEEE-cC--------------ce
Confidence            3567885588888888889999999999877543 2222    26677777 565555444 33              66


Q ss_pred             EEEECCCCceeEEeec--CC-CCCcEEEEEEccCCCEEEEEecC--------CeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699          274 TVWNMKTWKAMTVLPL--GE-DPPAITSLCFNHNGKILAASAVD--------GMIHMFDMSAGLQITGWPAHDSAISSIL  342 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~~~~  342 (458)
                      .++|+.+++.......  .. .....+.++++|+|++.++....        |.|+.++.. ++..... ..-...+.|+
T Consensus        63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~  140 (246)
T PF08450_consen   63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIA  140 (246)
T ss_dssp             EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEE
T ss_pred             EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceE
Confidence            7779998876655544  22 34578999999999966665433        568888877 4433332 2345678999


Q ss_pred             EcCCCCEEE-EecCCCeEEEEeccCCCe-eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          343 FGPDETSIF-SLGSDGKIIEWSLQNQGQ-VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       343 ~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                      |+|+++.|+ +-+..+.|..+++..... .....   .+.........+-.++++.+|++.++....+.|.+++.++. .
T Consensus       141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~-~  216 (246)
T PF08450_consen  141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR---VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK-L  216 (246)
T ss_dssp             EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE---EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC-E
T ss_pred             ECCcchheeecccccceeEEEeccccccceeeee---eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc-E
Confidence            999998775 566788999999975443 21111   11111122245788999999999888888999999999843 3


Q ss_pred             ccccCCCCCcEEEEEE-CCCCCeEE
Q 012699          421 GMRTLPHGAAITTVDW-HPTLPMFL  444 (458)
Q Consensus       421 ~~~~~~h~~~v~~~~~-~~~~~~l~  444 (458)
                      ...+.-....+++++| -|+.+.|+
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEEE
Confidence            3333322458999999 46655444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.29  E-value=2.1e-09  Score=86.22  Aligned_cols=227  Identities=9%  Similarity=0.010  Sum_probs=146.8

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeec-cCCCCCCceeeee-ecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDL-NTTDAFPSVLDLK-CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK  279 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~  279 (458)
                      ....+|+.|+..|...+|...+.+....+ ..+.  ..|.-+. +......+..++.|.             ++++.++.
T Consensus        82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn--n~v~~~~r~cd~~~~~~i~sndh-------------t~k~~~~~  146 (344)
T KOG4532|consen   82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN--NDVTLVKRYCDLKFPLNIASNDH-------------TGKTMVVS  146 (344)
T ss_pred             ccccEEEeccccceeeeecccCcccceeeecccc--cchhhhhhhcccccceeeccCCc-------------ceeEEEEe
Confidence            34568999999999999999876543222 1111  1111000 001111233334442             77777665


Q ss_pred             CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-cee-e-eeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG-LQI-T-GWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      .+..........  -.+.+++++++++++++.+....|..|.+... +.+ . .....++.-.+..|+.....+|+++.|
T Consensus       147 ~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd  224 (344)
T KOG4532|consen  147 GDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD  224 (344)
T ss_pred             cCcccceeeccc--cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence            443333222111  23789999999999999999999999998653 222 2 223334556788999999999999999


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC--EEEEEeCCccEEEEEccCCCcccccC-------CC
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR--RLLVTSGSVRAPIYQVRGHASGMRTL-------PH  427 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~i~i~~~~~~~~~~~~~-------~h  427 (458)
                      |++.|||++....+.....    .....|.+.+..+.|+|.|.  +|+..-.-+.+++.|+++......+.       .|
T Consensus       225 g~~~I~DVR~~~tpm~~~s----strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~  300 (344)
T KOG4532|consen  225 GTCAIYDVRNMATPMAEIS----STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH  300 (344)
T ss_pred             CcEEEEEecccccchhhhc----ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence            9999999998766553322    22234888999999999774  45555556889999998876554433       23


Q ss_pred             C-CcEEEEEECCCCCeEEEecCC
Q 012699          428 G-AAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       428 ~-~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      . ..+..-.|+.++....+..++
T Consensus       301 ~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  301 NTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             cccccccccccCCCcccccccch
Confidence            3 347888888887766655544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.25  E-value=4.6e-09  Score=84.28  Aligned_cols=232  Identities=11%  Similarity=0.046  Sum_probs=148.1

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS  238 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  238 (458)
                      .-+||.|+.-|...+|...+.+....... .+...|.-+.=.......+..++.|.++++.+++.+..........  -.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~  160 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LT  160 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cc
Confidence            35789999999999999886654321111 1111111111001233446777888889988887655433332222  34


Q ss_pred             eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699          239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI  317 (458)
Q Consensus       239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  317 (458)
                      +.+++++++++++++.+...             .|..|.+.... ....+........-.+..|+.....+|++..||++
T Consensus       161 ~ns~~~snd~~~~~~Vgds~-------------~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~  227 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSR-------------RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC  227 (344)
T ss_pred             eeeeEEcCCCceEEEecCCC-------------cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence            78999999999999998875             78888776532 22222333334445778899999999999999999


Q ss_pred             EEEeCCCCcee-----eeeeCCCCCeEEEEEcCCCC--EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCcee
Q 012699          318 HMFDMSAGLQI-----TGWPAHDSAISSILFGPDET--SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRH  390 (458)
Q Consensus       318 ~v~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  390 (458)
                      .|||++.....     .+-+.|.+.++.+.|+|.|.  +|+..-.-+.+.+-|+++............. ........+.
T Consensus       228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~-~~~~~tq~if  306 (344)
T KOG4532|consen  228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV-ERKHNTQHIF  306 (344)
T ss_pred             EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc-cccccccccc
Confidence            99999874322     22346899999999998653  5666666788999999987655433222111 0111122366


Q ss_pred             EEEEccCCCEEEEEeCC
Q 012699          391 EMALDVNGRRLLVTSGS  407 (458)
Q Consensus       391 ~~~~s~~g~~l~~~~~~  407 (458)
                      .-.|+.++.-+.+.+++
T Consensus       307 gt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  307 GTNFNNENESNDVKNEL  323 (344)
T ss_pred             cccccCCCcccccccch
Confidence            66777777666655543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=2.1e-09  Score=87.28  Aligned_cols=164  Identities=13%  Similarity=0.194  Sum_probs=122.1

Q ss_pred             eeEEEEECCCCceeEEeec-CC---CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEc
Q 012699          271 ASLTVWNMKTWKAMTVLPL-GE---DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFG  344 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~  344 (458)
                      |.|.++..........+.. ..   ......++.|++.+..++++..+|.+.+.+......  ++.+++|+-+++-..|+
T Consensus        95 G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~  174 (339)
T KOG0280|consen   95 GQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS  174 (339)
T ss_pred             ceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc
Confidence            6888886654333322211 00   011246788999999999999999999666554433  44889999999999997


Q ss_pred             C-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCccc
Q 012699          345 P-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGM  422 (458)
Q Consensus       345 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~  422 (458)
                      . +.+.+++|++|+.+..||++-.+...+.       ....|...|.++.-+| .+.++++|+.|..|++||.+...++.
T Consensus       175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~-------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWH-------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL  247 (339)
T ss_pred             cCCCceEEecCCCceEEEEEecCCcceeee-------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence            6 4568999999999999999965544433       2235677788888876 67899999999999999999777666


Q ss_pred             ccCCCCCcEEEEEECCCCC
Q 012699          423 RTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       423 ~~~~h~~~v~~~~~~~~~~  441 (458)
                      ....-.+.|+.+.++|.-.
T Consensus       248 ~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  248 FKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             ccCccccceEEEEecchhh
Confidence            6666678999999999643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=4.7e-10  Score=91.78  Aligned_cols=287  Identities=15%  Similarity=0.184  Sum_probs=174.4

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEecccccc---------cc---------------ccceeeeeccCCceeeee
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEA---------CA---------------TTATHMGSAEMGQTWASS   78 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~---------~~---------------~~~~~~~~~~~~~~~~~~   78 (458)
                      ....|+++.| ...|.||++|...|.+.++..+...         +.               +.+..+.|..+       
T Consensus        25 ead~ItaVef-d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~-------   96 (460)
T COG5170          25 EADKITAVEF-DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD-------   96 (460)
T ss_pred             ccceeeEEEe-ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC-------
Confidence            4566999999 9999999999999999887655332         00               12223444444       


Q ss_pred             CCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCc--------ceec-cCCCeeeeeeeeee-ccCCC
Q 012699           79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRD--------AQGE-EDFPEVKVDFLETF-LGHTS  148 (458)
Q Consensus        79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~-~~~~~~~~~~~~~~-~~h~~  148 (458)
                       .+...||++ ..|+++++|++.....+....-. ..+..-+|-|.-        +.-. ..+..+...+.+.+ ..|.-
T Consensus        97 -t~r~hFLls-tNdktiKlWKiyeknlk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y  173 (460)
T COG5170          97 -TGRNHFLLS-TNDKTIKLWKIYEKNLKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY  173 (460)
T ss_pred             -CCcceEEEe-cCCceeeeeeeecccchhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence             224455554 46899999998764321111000 001111222211        1111 12223333444444 67999


Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-cC-----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-YC-----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      -|++++|+.|.+.++++ .|=.|.+|+++-.......... ++     ..-|++..|+|.....+.-.+..|.|++-|++
T Consensus       174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            99999999999888876 4678999988644332211111 11     13478888998878888888888999999987


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      .......-      .........+...                                    .+ +.+-...|..+.|+
T Consensus       253 q~alcdn~------~klfe~~~D~v~~------------------------------------~f-f~eivsSISD~kFs  289 (460)
T COG5170         253 QSALCDNS------KKLFELTIDGVDV------------------------------------DF-FEEIVSSISDFKFS  289 (460)
T ss_pred             hhhhccCc------hhhhhhccCcccc------------------------------------hh-HHHHhhhhcceEEc
Confidence            43321100      0000011111000                                    00 12233468889999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCC------------CCe---EEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          303 HNGKILAASAVDGMIHMFDMSA-GLQITGWPAHD------------SAI---SSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~------------~~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      ++|+++++-+. -++++||.+. ..++.+++-|.            ..|   ..+.|+.|.+.+++|+..+..-+|-..
T Consensus       290 ~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         290 DNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             CCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            99999988654 4799999976 46677775553            223   357888899999999998888888744

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.21  E-value=1.7e-08  Score=92.40  Aligned_cols=259  Identities=15%  Similarity=0.181  Sum_probs=158.0

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceE-EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIM-SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      +..++.++.+|.+..+|..+++........   ..+. ...   .++..++.++.+|.+..+|.++|+.+.......   
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~---~~~~~~p~---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLD---ERLSGGVG---ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCC---CCcccceE---EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence            557888888999999998888765322211   1111 122   235667888899999999999999887665432   


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE---EEEEEccCCCEEEEEecC
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI---TSLCFNHNGKILAASAVD  314 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~d  314 (458)
                      .+.+.... .+..++.+..+             |.+..+|.++++.+..+.........   .+....  +..++.+..+
T Consensus       136 ~~~~~p~v-~~~~v~v~~~~-------------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~  199 (377)
T TIGR03300       136 EVLSPPLV-ANGLVVVRTND-------------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAG  199 (377)
T ss_pred             eeecCCEE-ECCEEEEECCC-------------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCC
Confidence            12111111 12334444333             69999999999988776543221000   111121  3467888889


Q ss_pred             CeEEEEeCCCCceeeeeeCCCC----C---eEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          315 GMIHMFDMSAGLQITGWPAHDS----A---ISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      |.+..+|.++++.+........    .   ...+.-+|  .+..++.++.+|.+..||..+++. .|......       
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-~W~~~~~~-------  271 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-LWKRDASS-------  271 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-EEeeccCC-------
Confidence            9999999999987654331100    0   00111112  345788888899999999987643 34322100       


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                         ..  ....++..+++++.+|.++.+|..+++.+...... .....+...  .+..|++++.||.|+++|.
T Consensus       272 ---~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       272 ---YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             ---cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence               11  11235678888889999999999888665444221 112222222  3567888999999999885

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=3.6e-08  Score=90.13  Aligned_cols=203  Identities=11%  Similarity=0.000  Sum_probs=125.3

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      ..|.+-|.+.... ..+...   .......|+|+++. ++..+....          ...|.++|+.+++......   .
T Consensus       169 ~~l~~~d~dg~~~-~~~~~~---~~~~~p~wSpDG~~~i~y~s~~~~----------~~~Iyv~dl~tg~~~~lt~---~  231 (419)
T PRK04043        169 SNIVLADYTLTYQ-KVIVKG---GLNIFPKWANKEQTAFYYTSYGER----------KPTLYKYNLYTGKKEKIAS---S  231 (419)
T ss_pred             ceEEEECCCCCce-eEEccC---CCeEeEEECCCCCcEEEEEEccCC----------CCEEEEEECCCCcEEEEec---C
Confidence            3555555544332 222222   25678999999985 555444311          1389999999887766543   2


Q ss_pred             CCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccC
Q 012699          293 PPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQN  366 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~  366 (458)
                      .+......|+|||+.++....   +..|+++|+.+++. ..+..+........|+|||+.|+..+. .+  .|.+.|+.+
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            344567889999987765432   35788889887764 344444433445689999998776654 33  477777765


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---------ccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---------VRAPIYQVRGHASGMRTLPHGAAITTVDWH  437 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~  437 (458)
                      +.....       .. ...    ....|||||++|+.....         ..|++.++.++.. ..+... .......|+
T Consensus       311 g~~~rl-------t~-~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~S  376 (419)
T PRK04043        311 GSVEQV-------VF-HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFS  376 (419)
T ss_pred             CCeEeC-------cc-CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEEC
Confidence            433111       10 011    124899999999877653         3688888877643 223322 233468999


Q ss_pred             CCCCeEEEecC
Q 012699          438 PTLPMFLTGSA  448 (458)
Q Consensus       438 ~~~~~l~s~~~  448 (458)
                      |||+.|+....
T Consensus       377 PDG~~I~f~~~  387 (419)
T PRK04043        377 SDGGSIMFIKY  387 (419)
T ss_pred             CCCCEEEEEEc
Confidence            99997765543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=9.8e-09  Score=94.39  Aligned_cols=370  Identities=12%  Similarity=0.080  Sum_probs=218.3

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEecccccccc-------ccceeeeeccCCceeeeeCCc-cceeEeeccCCCc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-------TTATHMGSAEMGQTWASSRPA-LSRFATNMSGNDS   94 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~   94 (458)
                      |...-+++.+ ++.|- +|-|+ ...+.+-|..+-+.+       ..+..+.|.|.....++...+ -.-.+|++...|.
T Consensus        14 ~~sN~~A~Dw-~~~GL-iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   14 SRSNRNAADW-SPSGL-IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             Cccccccccc-Cccce-EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            3334566666 66554 44444 244555555544443       344467788875555454433 5667888888999


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC---CC-CEEEEEeCCCc
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS---SG-NNIASASVDGT  170 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~~~dg~  170 (458)
                      |.+||.....                                  .+..+..|.++|..++|-+   +. ..|+.-....+
T Consensus        91 Iil~d~~~~s----------------------------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~  136 (1062)
T KOG1912|consen   91 IILVDFVLAS----------------------------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST  136 (1062)
T ss_pred             EEEEEehhhh----------------------------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence            9999976643                                  3345667888999999876   33 35666666789


Q ss_pred             EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC-------CceeeeccCCCC--------
Q 012699          171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA-------KRVVCDLNTTDA--------  235 (458)
Q Consensus       171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-------~~~~~~~~~~~~--------  235 (458)
                      +.+|+..+++....  .........|+.+.|-+.+.+..-+..|.+.+-+.-.       ++..+.-..+..        
T Consensus       137 lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~  214 (1062)
T KOG1912|consen  137 LVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET  214 (1062)
T ss_pred             EEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence            99999999987542  2223445566889887877777777777777766432       111111111000        


Q ss_pred             ------C---C------ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          236 ------F---P------SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       236 ------~---~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                            .   .      ....++|+|.-+.++.....+             .+.++|++-..++....++....++..+-
T Consensus       215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr-------------ellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR-------------ELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             hccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc-------------ceEEEcchhhceeEEEEeccCCcceeEec
Confidence                  0   0      012355666655444333332             89999999888888887665444444443


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCc----------------eeeeeeCC-CCCeEEEEEcCC-CCEEEEecCCCeEEEE
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGL----------------QITGWPAH-DSAISSILFGPD-ETSIFSLGSDGKIIEW  362 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~----------------~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg~i~iw  362 (458)
                      -.|+...|++...||.+.+|-.+...                ....+..- +-.+......|. ...++.--.+|...+|
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w  361 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW  361 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence            34445689999999999999754311                11111100 111122223343 3344444567788899


Q ss_pred             eccCCCeeEEeec----------------------CCcccCCCCCCCceeEEEEc-----------cCC-------CEEE
Q 012699          363 SLQNQGQVLWTRN----------------------CSRFCDPESSKSCRHEMALD-----------VNG-------RRLL  402 (458)
Q Consensus       363 d~~~~~~~~~~~~----------------------~~~~~~~~~~~~~v~~~~~s-----------~~g-------~~l~  402 (458)
                      .+.+++.......                      ...+.....|.....+....           |.|       .++|
T Consensus       362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA  441 (1062)
T KOG1912|consen  362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA  441 (1062)
T ss_pred             hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence            8885432211100                      00011111222333332222           222       3678


Q ss_pred             EEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          403 VTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       403 ~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      +|+..|+|.++|+.++.....+..|...|.++.|-.... |++
T Consensus       442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvS  483 (1062)
T KOG1912|consen  442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVS  483 (1062)
T ss_pred             eecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEE
Confidence            999999999999999877777778999999999976654 444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.21  E-value=7.5e-08  Score=81.21  Aligned_cols=238  Identities=11%  Similarity=0.072  Sum_probs=157.1

Q ss_pred             eEEEEEecCCCeEEEEEcCCCc-EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          194 IMSLEWECKSDRLLLIGTADGG-IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      ...++.+|.....++.+-.-|+ ..+||..+++....+......---=.-.|+++|++|++...+.        ..+.|.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~--------~~g~G~   78 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY--------ETGRGV   78 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc--------CCCcEE
Confidence            3456777667777888877664 6789999999887776654322223578999999999987764        334489


Q ss_pred             EEEEECC-CCceeEEeecCCCCCcEEEEEEccCCCEEEEEe------------------cCCeEEEEeCCCCceeeeee-
Q 012699          273 LTVWNMK-TWKAMTVLPLGEDPPAITSLCFNHNGKILAASA------------------VDGMIHMFDMSAGLQITGWP-  332 (458)
Q Consensus       273 i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~~~~-  332 (458)
                      |-|||.. +.+.+.++..  +--....+.+.|||+.|+++.                  .+-.+...|..+|+.+.+.. 
T Consensus        79 IgVyd~~~~~~ri~E~~s--~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   79 IGVYDAARGYRRIGEFPS--HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             EEEEECcCCcEEEeEecC--CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            9999999 5556666643  333456788999998888763                  23356677778888777633 


Q ss_pred             ---CCCCCeEEEEEcCCCCEEEEecCCCe-------EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699          333 ---AHDSAISSILFGPDETSIFSLGSDGK-------IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       333 ---~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                         .|..+|+.+++.++|..++..-..|.       +.+++....  .... .. ..........++-++++++++.+++
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~-~~-p~~~~~~l~~Y~gSIa~~~~g~~ia  232 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLL-PA-PEEQWRRLNGYIGSIAADRDGRLIA  232 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceec-cC-ChHHHHhhCCceEEEEEeCCCCEEE
Confidence               37779999999999976665443332       333333221  1100 00 0001124567899999999999888


Q ss_pred             EEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          403 VTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       403 ~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      +.+- .+.+.+||..++..+....  -..+..++-.+++ +++|.+.
T Consensus       233 ~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  233 VTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCC
Confidence            7775 5789999998875443222  1345556666665 5665553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=1.1e-09  Score=89.73  Aligned_cols=288  Identities=19%  Similarity=0.242  Sum_probs=170.5

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-CCccc--------------cccCCCceEEEEEecC-CCeEEEE
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-ASRNA--------------TIYCGTEIMSLEWECK-SDRLLLI  209 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~--------------~~~~~~~v~~~~~~~~-~~~~l~~  209 (458)
                      ....|+++.|...|.||++|...|.|.+|.-..... .....              ...-...|..+.|..+ +...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            346699999999999999999999999997543321 00000              0111245788888633 3346777


Q ss_pred             EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----cee
Q 012699          210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAM  284 (458)
Q Consensus       210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~  284 (458)
                      .+.|.+|++|.+.........+.     ....-.-+|.+.-+.+..                .+++=.+..-     ...
T Consensus       105 stNdktiKlWKiyeknlk~va~n-----nls~~~~~~~~g~~~s~~----------------~l~lprls~hd~iiaa~p  163 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAEN-----NLSDSFHSPMGGPLTSTK----------------ELLLPRLSEHDEIIAAKP  163 (460)
T ss_pred             ecCCceeeeeeeecccchhhhcc-----ccccccccccCCCcCCHH----------------HhhcccccccceEEEecc
Confidence            78899999999875532111110     000001111111111100                0000000000     001


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce---eeeeeCCC-----CCeEEEEEcCC-CCEEEEecC
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ---ITGWPAHD-----SAISSILFGPD-ETSIFSLGS  355 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~  355 (458)
                      +.+....|+.-++++.|+.|...++++ .|-.|.+|++.....   +..+++|.     .-|++..|+|. ...+.-.+.
T Consensus       164 ~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS  242 (460)
T COG5170         164 CRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS  242 (460)
T ss_pred             ceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence            112235677789999999998888775 577899999865322   33334443     46888999994 456777788


Q ss_pred             CCeEEEEeccCCCeeEEeecCCc-cc------CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CC
Q 012699          356 DGKIIEWSLQNQGQVLWTRNCSR-FC------DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PH  427 (458)
Q Consensus       356 dg~i~iwd~~~~~~~~~~~~~~~-~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h  427 (458)
                      .|.|++-|++............. ..      ........|..+.|+++|+++++-. -.+++|||++..+.+.... -|
T Consensus       243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechH
Confidence            99999999985432211100000 00      1112335678899999999997543 3579999998776655444 12


Q ss_pred             ------------CCcE---EEEEECCCCCeEEEecCCCcEEEEe
Q 012699          428 ------------GAAI---TTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       428 ------------~~~v---~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                                  .+.|   ..+.|+-|.+.+.+|+.....-||-
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence                        2333   3478898888888998877666653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.19  E-value=1.9e-08  Score=82.10  Aligned_cols=198  Identities=13%  Similarity=0.172  Sum_probs=126.7

Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--cee--EEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--KAM--TVLPLGEDPPAITSLCFNHNGKILAASAVDGMI  317 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  317 (458)
                      ++.+.+|+.++..-..              .|.+-..++.  ..+  ..+. ......-+.++||||+.+||.+...|+|
T Consensus         3 ~~~~~~Gk~lAi~qd~--------------~iEiRsa~Ddf~si~~kcqVp-kD~~PQWRkl~WSpD~tlLa~a~S~G~i   67 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQ--------------CIEIRSAKDDFSSIIGKCQVP-KDPNPQWRKLAWSPDCTLLAYAESTGTI   67 (282)
T ss_pred             eeecCCCcEEEEEecc--------------EEEEEeccCCchheeEEEecC-CCCCchheEEEECCCCcEEEEEcCCCeE
Confidence            5566788887776654              6666544431  111  1222 2223346889999999999999999999


Q ss_pred             EEEeCCCCceeeeeeCC-------CCCeEEEEEcCC------CCEEEEecCCCeEEEEeccCC--CeeEEeecCCcccCC
Q 012699          318 HMFDMSAGLQITGWPAH-------DSAISSILFGPD------ETSIFSLGSDGKIIEWSLQNQ--GQVLWTRNCSRFCDP  382 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~  382 (458)
                      ++||+.. ..+..++..       ...|..+.|.+-      ...|++...+|.++-|-+..+  +.-.   ..+.+.-.
T Consensus        68 ~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~---e~hsfsf~  143 (282)
T PF15492_consen   68 RVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ---ENHSFSFS  143 (282)
T ss_pred             EEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce---eeEEEEec
Confidence            9999874 444444322       246677777542      224667778888888776432  1111   11122222


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCc-----------cEEEEEccCCCccc--------------------ccC------
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSV-----------RAPIYQVRGHASGM--------------------RTL------  425 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~-----------~i~i~~~~~~~~~~--------------------~~~------  425 (458)
                      ......|.++.++|.-++|++|+...           -+.-|.+-...+..                    ++.      
T Consensus       144 ~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs  223 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS  223 (282)
T ss_pred             ccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence            34567899999999999998887421           25556543211110                    000      


Q ss_pred             ---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          426 ---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       426 ---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                         .....|..|..||||.+||+...+|.|.+|++.
T Consensus       224 ~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  224 RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence               135679999999999999999999999999974

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.17  E-value=1.4e-09  Score=86.73  Aligned_cols=151  Identities=17%  Similarity=0.295  Sum_probs=97.5

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceee-eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVC-DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~  282 (458)
                      ++.++++..||.+.+.+.+....+. .+... + ..-.+.++...+..+.++....        -..-+..+.|+++..+
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~-~-~~~as~~~~~~~~~i~s~~~g~--------~n~~d~~~a~~~~p~~  170 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSI-H-SGSASRKICRHGNSILSGGCGN--------WNAQDNFYANTLDPIK  170 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccc-c-ccccccceeecccEEecCCcce--------Eeeccceeeecccccc
Confidence            4568999999999999887622111 11110 0 1122233334444444433210        0001356666665433


Q ss_pred             eeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeE
Q 012699          283 AMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGP-DETSIFSLGSDGKI  359 (458)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  359 (458)
                      ....-..  ....|.+++-+|. ...+++|+.||.+-+||.++.. +...+..|+.+++.+-|+| ++..|++++.||.+
T Consensus       171 t~~~~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl  248 (319)
T KOG4714|consen  171 TLIPSKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL  248 (319)
T ss_pred             ccccccc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence            3222211  1234889999995 5577889999999999999863 4456679999999999999 67899999999999


Q ss_pred             EEEeccC
Q 012699          360 IEWSLQN  366 (458)
Q Consensus       360 ~iwd~~~  366 (458)
                      ..||..+
T Consensus       249 w~wdas~  255 (319)
T KOG4714|consen  249 WHWDAST  255 (319)
T ss_pred             EEEcCCC
Confidence            9999875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=8.4e-08  Score=87.75  Aligned_cols=196  Identities=9%  Similarity=0.016  Sum_probs=122.4

Q ss_pred             ceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699          193 EIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG  269 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (458)
                      ......|+|.....++..+.   +..|.++|+.+++........   .......|+||++.++......          +
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~---g~~~~~~~SPDG~~la~~~~~~----------g  255 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ---GMLVVSDVSKDGSKLLLTMAPK----------G  255 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC---CcEEeeEECCCCCEEEEEEccC----------C
Confidence            66788999443333554333   356999999888765543322   3455678999998776554321          1


Q ss_pred             ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCC
Q 012699          270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDMSAGLQITGWPAHDSAISSILFGPD  346 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  346 (458)
                      +..|.++|+.+++..+...   .........|+|||+.|+..+.. +  .|++.|+.+++..+.... ...  ...|+|+
T Consensus       256 ~~~Iy~~dl~~g~~~~LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPD  329 (419)
T PRK04043        256 QPDIYLYDTNTKTLTQITN---YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTY  329 (419)
T ss_pred             CcEEEEEECCCCcEEEccc---CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCC
Confidence            2488999998876544322   22223456899999988776542 2  688889887765333221 111  2489999


Q ss_pred             CCEEEEecCC---------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEE
Q 012699          347 ETSIFSLGSD---------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQ  414 (458)
Q Consensus       347 ~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~  414 (458)
                      |++|+..+..         ..|.+.|+.++....       +...    .......|+|||+.|+..+..   ..+.+.+
T Consensus       330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-------LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-------LTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-------CCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence            9988866553         257888887653221       1110    112347899999998877653   2466777


Q ss_pred             ccCC
Q 012699          415 VRGH  418 (458)
Q Consensus       415 ~~~~  418 (458)
                      +++.
T Consensus       399 l~g~  402 (419)
T PRK04043        399 LNYN  402 (419)
T ss_pred             cCCC
Confidence            7664

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.13  E-value=1.5e-09  Score=92.04  Aligned_cols=150  Identities=13%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCCCce----eeeeeCCCCCeEEEEEcCCCCEEEEe---cCCCeEEEEeccCCC
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ----ITGWPAHDSAISSILFGPDETSIFSL---GSDGKIIEWSLQNQG  368 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~  368 (458)
                      ...+..+|.++++|++..+....++++.....    +..... ...-+++.|..+......+   ++...+.+|....+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            44566778899999998888887887765432    222211 2223344444444444333   33444555555432 


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEec
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                               ......+|-..+..++++||+++++++..|..|++-.+.....+..+. ||...|..++.-++ ..|+++|
T Consensus       143 ---------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s  212 (390)
T KOG3914|consen  143 ---------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS  212 (390)
T ss_pred             ---------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC
Confidence                     222334677889999999999999999999999999988776665554 89999999999765 4589999


Q ss_pred             CCCcEEEEeC
Q 012699          448 ADHSVQVMSL  457 (458)
Q Consensus       448 ~dg~v~iw~l  457 (458)
                      .|++|++||+
T Consensus       213 GD~tlr~Wd~  222 (390)
T KOG3914|consen  213 GDKTLRLWDI  222 (390)
T ss_pred             CCCcEEEEec
Confidence            9999999997

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.10  E-value=1.9e-09  Score=91.40  Aligned_cols=152  Identities=11%  Similarity=0.159  Sum_probs=103.9

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCce----eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRV----VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      +++++++.+..+....+++......    ........   ....+.+..+......+...+          ....+.+|.
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~---~~~ai~~~~~~~sv~v~dkag----------D~~~~di~s  138 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK---RPTAISFIREDTSVLVADKAG----------DVYSFDILS  138 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc---CcceeeeeeccceEEEEeecC----------Cceeeeeec
Confidence            6778888888877777777654332    22222221   223333333333332222211          013666666


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCC
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      ...+.+...+   +|-..+..++++||+++|+++..|..|++-.......+..+- +|+.-|..++.-++. .|+++|.|
T Consensus       139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD  214 (390)
T KOG3914|consen  139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGD  214 (390)
T ss_pred             ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCC
Confidence            6555555443   788889999999999999999999999998887666665554 799999999997654 68999999


Q ss_pred             CeEEEEeccCCCee
Q 012699          357 GKIIEWSLQNQGQV  370 (458)
Q Consensus       357 g~i~iwd~~~~~~~  370 (458)
                      +++++||+.+++.+
T Consensus       215 ~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  215 KTLRLWDITSGKLL  228 (390)
T ss_pred             CcEEEEecccCCcc
Confidence            99999999998765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.2e-08  Score=87.98  Aligned_cols=288  Identities=15%  Similarity=0.095  Sum_probs=190.7

Q ss_pred             eCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC
Q 012699           78 SRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS  157 (458)
Q Consensus        78 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  157 (458)
                      ++....+++.+++.||.++.|.-..-.                               -.+.+..++.|.+.|.+++.+-
T Consensus        15 v~~tka~fiiqASlDGh~KFWkKs~is-------------------------------GvEfVKhFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen   15 VFPTKAKFIIQASLDGHKKFWKKSRIS-------------------------------GVEFVKHFRAHLGVILSLAVSY   63 (558)
T ss_pred             EeeehhheEEeeecchhhhhcCCCCcc-------------------------------ceeehhhhHHHHHHHHhhhccc
Confidence            334456899999999999999853311                               1125667889999999999999


Q ss_pred             CCCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC----eEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699          158 SGNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD----RLLLIGTADGGIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       158 ~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~  232 (458)
                      ++.++.|.+. |..++++|+.+-...........+..   +.|....+    .+-++.-.+|.+.++|-..+.+..-+..
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence            9999999777 99999999987765533333333322   33332223    2333344578999999876654444444


Q ss_pred             CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC------CceeEEe-------ecCCCCCcEEEE
Q 012699          233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT------WKAMTVL-------PLGEDPPAITSL  299 (458)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~------~~~~~~~-------~~~~~~~~i~~~  299 (458)
                      .-+..+|..+.+.+.+..+++....             |.|.-|....      .+....+       .+........++
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~-------------gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~  207 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDIS-------------GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF  207 (558)
T ss_pred             ccccCceEEEEeeccccceeecccc-------------ceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence            4456899999999999999888766             6999998773      1111111       112234567899


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeeee--------------------------------CCCC-CeEEEEEcCC
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--------------------------------AHDS-AISSILFGPD  346 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------------------~~~~-~v~~~~~~~~  346 (458)
                      .|+|++..+.+-+.|..|++++..+++.++.+.                                .|.. .-+.+.|...
T Consensus       208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes  287 (558)
T KOG0882|consen  208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES  287 (558)
T ss_pred             EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence            999999999999999999999999887654332                                1111 3345678888


Q ss_pred             CCEEEEecCCCeEEEEeccCCCeeEEeecCCc--cc------CC--------CCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699          347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR--FC------DP--------ESSKSCRHEMALDVNGRRLLVTSGSVRA  410 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~------~~--------~~~~~~v~~~~~s~~g~~l~~~~~~~~i  410 (458)
                      +++|+-++-=| |++.++.++...........  +.      ..        ......-..+.+.+|-..++++-..+++
T Consensus       288 ~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rf  366 (558)
T KOG0882|consen  288 GNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRF  366 (558)
T ss_pred             CCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceE
Confidence            88888877654 88888887654332211110  00      00        0000111123466777888888888889


Q ss_pred             EEE
Q 012699          411 PIY  413 (458)
Q Consensus       411 ~i~  413 (458)
                      +++
T Consensus       367 ylf  369 (558)
T KOG0882|consen  367 YLF  369 (558)
T ss_pred             EEE
Confidence            988

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.8e-09  Score=90.93  Aligned_cols=258  Identities=15%  Similarity=0.125  Sum_probs=169.6

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEEEEcC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAWNVD  222 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~wd~~  222 (458)
                      -|.+.|+.+.-. ..+++.+++.||.++.|.-..-..+. ......|-..+.+++.+ .++.++.+.+. |..++++|++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEee
Confidence            377778776654 45699999999999999754312211 11223344567777777 77888888777 9999999998


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      +-..+.-++...-++.+. ...++...  .++....+.            |.+.++|-....+...+.-.-|..+|.++.
T Consensus        85 n~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~s------------g~i~VvD~~~d~~q~~~fkklH~sPV~~i~  151 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKS------------GKIFVVDGFGDFCQDGYFKKLHFSPVKKIR  151 (558)
T ss_pred             ccchhhhcccccCCCceE-EecCCCCeeeeEEeecccC------------CCcEEECCcCCcCccceecccccCceEEEE
Confidence            766554444433222222 22222211  333333333            699999988766555554567888999999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCC------Cce---------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSA------GLQ---------ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~------~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      +++-+..+++....|.|.-|....      .+.         +..+........++.|+|++..+.+-+.|..|++++.+
T Consensus       152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence            999999999999999999999762      111         11122334567899999999999999999999999998


Q ss_pred             CCCeeEEeecCCc--------c---------------cCCCCC-CCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          366 NQGQVLWTRNCSR--------F---------------CDPESS-KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       366 ~~~~~~~~~~~~~--------~---------------~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      +++..........        .               ...+.+ ......+.|...|++|+.++--| |++.++.++
T Consensus       232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence            7654321110000        0               000111 12345578999999999887666 677777655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.06  E-value=2.5e-07  Score=78.87  Aligned_cols=221  Identities=15%  Similarity=0.169  Sum_probs=136.7

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV  247 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (458)
                      +|+|..||..+++.+.................  .++..+++++.++.|..||..+|+.+........   +.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---cccee-eec
Confidence            67888888877776543322111122221122  2455677778999999999999998877776432   11111 223


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCCCC-CcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGEDP-PAITSLCFNHNGKILAASAVDGMIHMFDMSAG  325 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  325 (458)
                      +..++....+             +.+..+|..+++..... ...... ...........+..++++..++.|..+|+++|
T Consensus        76 ~~~v~v~~~~-------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG  142 (238)
T PF13360_consen   76 GGRVYVGTSD-------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG  142 (238)
T ss_dssp             TTEEEEEETT-------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred             ccccccccce-------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence            3344444443             49999999999998884 322111 11222333334778888888999999999999


Q ss_pred             ceeeeeeCCCCC----------e-EEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          326 LQITGWPAHDSA----------I-SSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       326 ~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      +.+.........          + ..+.+ .++ .++.++.++.+.-+|+.+++.. +... ..         .+.. ..
T Consensus       143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~-w~~~-~~---------~~~~-~~  208 (238)
T PF13360_consen  143 KLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKL-WSKP-IS---------GIYS-LP  208 (238)
T ss_dssp             EEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEE-EEEC-SS----------ECE-CE
T ss_pred             cEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEE-EEec-CC---------CccC-Cc
Confidence            998887764422          1 22222 244 7777777775433499987644 4322 11         1111 24


Q ss_pred             ccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699          395 DVNGRRLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       395 s~~g~~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      .+++..|++++.++.+..||+.+++..
T Consensus       209 ~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  209 SVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             eeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            567888888889999999999988643

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.04  E-value=5.4e-07  Score=73.79  Aligned_cols=237  Identities=12%  Similarity=0.126  Sum_probs=127.8

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEecCCCCCCC--cc-ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          153 CRFSSSGNNIASASVDGTVRIWTYDSSTPAS--RN-ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       153 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      ++.+++|+.||.- .|..|.|=..+..-...  +. .......+=..++|+ +++.+|+.+...|+|+++|+..... ..
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~l-f~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSEL-FV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEeccccee-EE
Confidence            5667788877765 46666665544322110  00 111222345789999 8899999999999999999986433 33


Q ss_pred             ccCCC-----CCCceeeeeecCCC------CeEEEeecccCCCCcceeeccceeEEEEECC-----CCceeEEeecCCC-
Q 012699          230 LNTTD-----AFPSVLDLKCSPVE------PIFVSAAASRRYGSSNIYSWGFASLTVWNMK-----TWKAMTVLPLGED-  292 (458)
Q Consensus       230 ~~~~~-----~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-----~~~~~~~~~~~~~-  292 (458)
                      +....     -...|..+.|.+..      ..++.....             |.++-|-+.     ..+....+.+..| 
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------------G~L~Sy~vs~gt~q~y~e~hsfsf~~~y  146 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------------GQLRSYLVSVGTNQGYQENHSFSFSSHY  146 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEecc-------------ceeeeEEEEcccCCcceeeEEEEecccC
Confidence            33211     11234445444332      122222222             455555432     2334445554433 


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE--EEEecCCCe------EEEEec
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS--IFSLGSDGK------IIEWSL  364 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~------i~iwd~  364 (458)
                      +..|.++.++|..++|++|+....      +++.    -++....+++-..-.+..+  .++...|+.      -.+|.+
T Consensus       147 p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  147 PHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             CCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence            678999999999888888765322      0000    0011112222221111111  112222211      123332


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~  424 (458)
                      -+.+         .+.........|..|..||||+.||+...+|.|.+|++.+.......
T Consensus       217 ~~~~---------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  217 PSFK---------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             ccee---------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            2210         01111234567999999999999999999999999999876554443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=3.2e-06  Score=72.30  Aligned_cols=228  Identities=16%  Similarity=0.175  Sum_probs=143.2

Q ss_pred             EEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          152 CCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       152 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      ++.|.+ ++.++++--..+.|..|+..++....    ..... ...+++..+++. ++.+... .+.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~~-~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLPG-PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESSS-EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecCC-CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEe
Confidence            578888 67777777778999999987765421    22222 677777744555 4444444 4566699988655444


Q ss_pred             cC--CC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          231 NT--TD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       231 ~~--~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      ..  .. ......++++.|+|.+.++..........     ..|.+..++.. ++......   .-...+.++|+|+++.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~-----~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI-----DPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG-----GSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSE
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccc-----cccceEEECCC-CeEEEEec---CcccccceEECCcchh
Confidence            33  22 34678899999999977776544321111     00578888887 45444332   1234789999999997


Q ss_pred             EE-EEecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699          308 LA-ASAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       308 l~-~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      |+ +-+..+.|..|++.....       ...+....+..-.+++..+|++.++....+.|.+++.. ++ ........  
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p--  223 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELP--  223 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-S--
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCC--
Confidence            76 455678899999864221       12222222347889999999888877778999999987 33 32222111  


Q ss_pred             cCCCCCCCceeEEEE-ccCCCEEEEEe
Q 012699          380 CDPESSKSCRHEMAL-DVNGRRLLVTS  405 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~-s~~g~~l~~~~  405 (458)
                            ...+++++| .|+.+.|++.+
T Consensus       224 ------~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  224 ------VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             ------SSSEEEEEEESTTSSEEEEEE
T ss_pred             ------CCCEEEEEEECCCCCEEEEEe
Confidence                  125789999 47777776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=6.3e-09  Score=95.08  Aligned_cols=282  Identities=13%  Similarity=0.199  Sum_probs=173.4

Q ss_pred             cceeeeeeccCCCceeeeeecCcceEEeccc--ccccc--c-----cceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           25 ETIKYANIGQTKNSTLASGVNEESLLLSTNS--SEACA--T-----TATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        25 ~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~--~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..++++.+ +|.|.-+|.++.-|-..+ |..  ..+..  .     .+.+..|++..        ....++++. .....
T Consensus        25 ~~~~a~si-~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~--------a~~~wiVst-s~qka   93 (1081)
T KOG0309|consen   25 GGFNAVSI-NPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHP--------AKPYWIVST-SNQKA   93 (1081)
T ss_pred             Ccccceee-ccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCC--------CCceeEEec-Ccchh
Confidence            45788888 999998888887775443 222  11111  1     22356666661        223334333 34445


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw  174 (458)
                      .+|.+.......                               ....+.||...|+.+-|+|.. ..+++++.|-.+..|
T Consensus        94 iiwnlA~ss~~a-------------------------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w  142 (1081)
T KOG0309|consen   94 IIWNLAKSSSNA-------------------------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW  142 (1081)
T ss_pred             hhhhhhcCCccc-------------------------------eEEEEecCccceeccccCCCCCcceeeccccccceee
Confidence            567765533111                               233577999999999999964 468999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecCCCC-eEE
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSPVEP-IFV  252 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~  252 (458)
                      |+++..... .....-......++|+-.++..+++ +....|++||.+.|. ++..++.+  ...+..+.|..--. .+.
T Consensus       143 d~rSp~~p~-ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~--vs~vn~~~fnr~~~s~~~  218 (1081)
T KOG0309|consen  143 DMRSPHRPF-YSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGH--VSSVNSIDFNRFKYSEIM  218 (1081)
T ss_pred             eccCCCcce-eeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEeccc--ceeeehHHHhhhhhhhhc
Confidence            998765432 1222233456778898666665554 555689999998764 55666653  35677777665332 344


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC--EEEEEecCCeEEEEeCC-------
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK--ILAASAVDGMIHMFDMS-------  323 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~-------  323 (458)
                      +.+.|             |+|+.||............. ...+|..-.+-|-|.  ++.---.+..+.+++.+       
T Consensus       219 s~~~d-------------~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n  284 (1081)
T KOG0309|consen  219 SSSND-------------GTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN  284 (1081)
T ss_pred             ccCCC-------------Cceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc
Confidence            44444             69999998764433332221 224455556666332  22211112234444332       


Q ss_pred             --C-CceeeeeeCCCCCeEEEEEcCCC----------CEEEEecCCCeEEEEeccC
Q 012699          324 --A-GLQITGWPAHDSAISSILFGPDE----------TSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       324 --~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~  366 (458)
                        + .+++.++.+|.+.|....|-..+          -.|+|=+.|..+++|-+.+
T Consensus       285 ~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  285 VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence              2 46789999999988776664321          2699999999999999874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.99  E-value=1.9e-09  Score=62.21  Aligned_cols=38  Identities=45%  Similarity=0.800  Sum_probs=36.1

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      ++++++++|.++|++++|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.98  E-value=1.1e-06  Score=80.88  Aligned_cols=262  Identities=13%  Similarity=0.102  Sum_probs=155.5

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-EEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      +..++.++.+|.+..+|.++++.......   ...+.+ ...   .+..++.+..+|.+..+|.++|+.+..........
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV---AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccC---CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence            45677788899999999998887643322   122221 111   23457778889999999999999887765432100


Q ss_pred             ce---eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-----cEEEEEEcc--CCCE
Q 012699          238 SV---LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-----AITSLCFNH--NGKI  307 (458)
Q Consensus       238 ~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~--~~~~  307 (458)
                      ..   ......  +..++.+..+             |.+..+|..+++............     ....+..+|  .+..
T Consensus       194 ~~~~~~sP~v~--~~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~  258 (394)
T PRK11138        194 TLRGESAPATA--FGGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV  258 (394)
T ss_pred             cccCCCCCEEE--CCEEEEEcCC-------------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence            00   011111  1223333333             588889999888776554321100     011111222  2456


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      +++++.+|.+..+|..+++.+.+...  .....+.  ..+..++.++.+|.+..+|..+++. .|....  ..     ..
T Consensus       259 vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~--~~-----~~  326 (394)
T PRK11138        259 VYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVE-LWSQSD--LL-----HR  326 (394)
T ss_pred             EEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcE-EEcccc--cC-----CC
Confidence            77778899999999999987765432  1111222  2456788888999999999987644 432211  00     00


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE-EEEECCCCCeEEEecCCCcEEEEeC
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT-TVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .......  .+.+|++++.+|.++..|..+++.+.+..-....+. +..+  .+..|+.++.||.|..+++
T Consensus       327 ~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        327 LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            0111111  356788899999999999988876555432222222 2223  2446888899999998875

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.98  E-value=3.7e-06  Score=71.22  Aligned_cols=245  Identities=16%  Similarity=0.108  Sum_probs=155.2

Q ss_pred             eEEEEeCC-CCCEEEEEeCCCc-EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-----CCcEEEEEcC
Q 012699          150 ISCCRFSS-SGNNIASASVDGT-VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-----DGGIKAWNVD  222 (458)
Q Consensus       150 v~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~  222 (458)
                      ...++.+| ....++.+-.-|+ ..+||..+++...........+-.-.-.|+ +++++|++.-.     .|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECc
Confidence            34577788 4556677766665 578999888766433222222222345677 78888888643     5799999999


Q ss_pred             -CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCC----C-CcceeeccceeEEEEECCCCceeEEeec--CCCCC
Q 012699          223 -AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY----G-SSNIYSWGFASLTVWNMKTWKAMTVLPL--GEDPP  294 (458)
Q Consensus       223 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~g~i~i~d~~~~~~~~~~~~--~~~~~  294 (458)
                       +-+.+.++..+.  -....+.+.|+++.|+.+...-..    + ..+-..+....+...|..+++.+....+  ..|..
T Consensus        86 ~~~~ri~E~~s~G--IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   86 RGYRRIGEFPSHG--IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             CCcEEEeEecCCC--cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence             556666666654  346678899999777665432110    1 1122233345788889999999888766  45777


Q ss_pred             cEEEEEEccCCCEEEEEecCC-------eEEEEeCCCCceeeeee-------CCCCCeEEEEEcCCCCEEEEec-CCCeE
Q 012699          295 AITSLCFNHNGKILAASAVDG-------MIHMFDMSAGLQITGWP-------AHDSAISSILFGPDETSIFSLG-SDGKI  359 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~-~dg~i  359 (458)
                      .|..+++.++|..++..-..|       .|.+++..  +.+..+.       .-.+.+-+|++++++.++++.+ .-+.+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            899999999997666654443       23444432  2222222       2346789999999998876555 47889


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      .+||..++......           .-..+..++..+++  +++.+..|.+..
T Consensus       242 ~~~d~~tg~~~~~~-----------~l~D~cGva~~~~~--f~~ssG~G~~~~  281 (305)
T PF07433_consen  242 AVWDAATGRLLGSV-----------PLPDACGVAPTDDG--FLVSSGQGQLIR  281 (305)
T ss_pred             EEEECCCCCEeecc-----------ccCceeeeeecCCc--eEEeCCCccEEE
Confidence            99999886443211           12235566666666  444455554433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=1.2e-06  Score=74.70  Aligned_cols=223  Identities=16%  Similarity=0.116  Sum_probs=133.1

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      +|.|..||..+|+.+............... ..+++..+++++.+             +.+..||..+++.+..+.....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~-------------~~l~~~d~~tG~~~W~~~~~~~   67 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGD-------------GNLYALDAKTGKVLWRFDLPGP   67 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETT-------------SEEEEEETTTSEEEEEEECSSC
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCC-------------CEEEEEECCCCCEEEEeecccc
Confidence            688999999999988877653211222211 22344555555444             5999999999999988876433


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee-eCCCC---CeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW-PAHDS---AISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      ....  .  ...+..+++++.++.++.+|..+|+.+... .....   .........++..++.+..++.|..+|+++++
T Consensus        68 ~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   68 ISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             GGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ccce--e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            1111  1  223556777778889999999999998874 32211   12223333347788888889999999999865


Q ss_pred             eeEEeecCCcccCCCC--CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe
Q 012699          369 QVLWTRNCSRFCDPES--SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  446 (458)
                      . ++............  ....+..-....++ .+++++.++.+.-+|+.+++......  ...+..+ ..+++..|+.+
T Consensus       144 ~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~  218 (238)
T PF13360_consen  144 L-LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVT  218 (238)
T ss_dssp             E-EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEE
T ss_pred             E-EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEE
Confidence            5 33332211110000  00111222222244 77777777754444998887543222  2223321 34567777777


Q ss_pred             cCCCcEEEEeCC
Q 012699          447 SADHSVQVMSLS  458 (458)
Q Consensus       447 ~~dg~v~iw~l~  458 (458)
                      +.++.|..||+.
T Consensus       219 ~~~~~l~~~d~~  230 (238)
T PF13360_consen  219 SSDGRLYALDLK  230 (238)
T ss_dssp             ETTTEEEEEETT
T ss_pred             eCCCEEEEEECC
Confidence            799999999974

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.89  E-value=1.2e-06  Score=80.64  Aligned_cols=261  Identities=13%  Similarity=0.118  Sum_probs=150.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCCC--------ce-EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGT--------EI-MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      +..++.++.+|.+.-+|..+++............        .+ ..+..   .+..++.++.+|.+..+|.++|+.+.+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            4467777777888888887776543222111000        00 01121   245677788899999999999998877


Q ss_pred             ccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc---EEEEEEccCC
Q 012699          230 LNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA---ITSLCFNHNG  305 (458)
Q Consensus       230 ~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~  305 (458)
                      ......   +.+ .... + ..++.+..+             |.+..+|.++++.+..+........   ..+...  .+
T Consensus       146 ~~~~~~---~~ssP~v~-~-~~v~v~~~~-------------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~  205 (394)
T PRK11138        146 TKVAGE---ALSRPVVS-D-GLVLVHTSN-------------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF  205 (394)
T ss_pred             ccCCCc---eecCCEEE-C-CEEEEECCC-------------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence            665431   111 1111 2 233333333             6999999999999887764321000   011111  13


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCC-------CeEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDS-------AISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      ..++.++.+|.+..+|..+++.+...+....       ....+.-+|  .+..++.++.+|.+..+|..+++. .|....
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~  284 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKREY  284 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeecC
Confidence            3577788899999999999887665431110       011112223  345677788899999999987654 443321


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      ..          ...+  ...+..+++++.++.++.+|..+++...+...-. ....+...  .+..|+.++.||.|.+.
T Consensus       285 ~~----------~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        285 GS----------VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             CC----------ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence            11          0111  2256678888889999999998876544332111 11222222  24467778888888877


Q ss_pred             eC
Q 012699          456 SL  457 (458)
Q Consensus       456 ~l  457 (458)
                      |.
T Consensus       351 d~  352 (394)
T PRK11138        351 NR  352 (394)
T ss_pred             EC
Confidence            64

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=9.2e-08  Score=89.83  Aligned_cols=169  Identities=17%  Similarity=0.181  Sum_probs=126.7

Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      .+..+|+++.+..+.......  .+.-+  ..+++++.+|...|+|.+-|.++.+.+.++.+|.+.|..+..  .|+.|+
T Consensus       158 ~li~~Dl~~~~e~r~~~v~a~--~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLi  231 (1118)
T KOG1275|consen  158 KLIHIDLNTEKETRTTNVSAS--GVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLI  231 (1118)
T ss_pred             heeeeecccceeeeeeeccCC--ceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEE
Confidence            788899998877776654332  24433  346889999999999999999999999999999999976654  688999


Q ss_pred             EecC---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEccCCCcc
Q 012699          352 SLGS---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       352 ~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      +++.         |..|++||++..+..          .+........-+.|.|. ...+++++..|...+-|..+...+
T Consensus       232 tCG~S~R~~~l~~D~FvkVYDLRmmral----------~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  232 TCGYSMRRYNLAMDPFVKVYDLRMMRAL----------SPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             Eeecccccccccccchhhhhhhhhhhcc----------CCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence            9875         556899999976432          22222333355677775 467888999999999994433222


Q ss_pred             -c---ccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          422 -M---RTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       422 -~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                       .   ........+..++++++++.||.|..+|.|.+|.
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence             1   1123445599999999999999999999999995

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=8.4e-09  Score=59.44  Aligned_cols=39  Identities=36%  Similarity=0.571  Sum_probs=36.8

Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      ++++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=2.2e-09  Score=99.99  Aligned_cols=223  Identities=12%  Similarity=0.160  Sum_probs=153.5

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE-cCCC-c
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG-TADG-G  215 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg-~  215 (458)
                      +..++++.|+...+|++|+-+.++|+.|+..|.|+++++.++....  ....|++.++.+.-+ .++..+++. +... .
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~SavT~vePs-~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc--ccccccccccccccc-CCcceeeeeccccCch
Confidence            5677889999999999999999999999999999999999987653  455678889888877 555555544 3333 5


Q ss_pred             EEEEEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC--CC
Q 012699          216 IKAWNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG--ED  292 (458)
Q Consensus       216 i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~--~~  292 (458)
                      ..+|++.+ +...+++.      .-.++.|+.....-+.+...             ....+||++++.+..++-..  ..
T Consensus      1169 saLW~~~s~~~~~Hsf~------ed~~vkFsn~~q~r~~gt~~-------------d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD------EDKAVKFSNSLQFRALGTEA-------------DDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             HHHhccccccCcccccc------ccceeehhhhHHHHHhcccc-------------cceEEEecccCcHHHHhcCcchhh
Confidence            67898764 33333333      33456666654433333333             28899999998887663211  11


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                      ...-++..|+|+.++++-   ||  .+||.+..+.++.|...+..+ .=.|+|+|..++..+     -|||+++.+.+..
T Consensus      1230 ~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             hhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence            223478899999887763   55  689999888777776544322 335999999888765     4899998755433


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVT  404 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  404 (458)
                      ....           .-..+.|+..|..++..
T Consensus      1299 VP~L-----------dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSL-----------DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             Cccc-----------cceEEEeccCccchhhh
Confidence            2221           12567788888776643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.82  E-value=6.4e-08  Score=77.55  Aligned_cols=145  Identities=18%  Similarity=0.213  Sum_probs=93.0

Q ss_pred             CCCEEEEEecCCeEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecC-----CCeEEEEeccCCCeeEEeecCC
Q 012699          304 NGKILAASAVDGMIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGS-----DGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .++.++++..||.+.+++.+.-..+ .++..-...-.+.++...++.+.++..     -+..+.|+++..+...      
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~------  173 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI------  173 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc------
Confidence            4567899999999999998752111 111111111112222234444443321     2235566665433221      


Q ss_pred             cccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCC-eEEEecCCCcEEE
Q 012699          378 RFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLP-MFLTGSADHSVQV  454 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~v~i  454 (458)
                         ........+.+++-+|.. +.+++|+.+|.+-+||.+....+..+. .|+.+++.+-|+|... .|.++++||.+.-
T Consensus       174 ---~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  174 ---PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             ---ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence               111223348889999955 566778889999999998875555444 7999999999999765 8999999999999


Q ss_pred             EeC
Q 012699          455 MSL  457 (458)
Q Consensus       455 w~l  457 (458)
                      ||-
T Consensus       251 wda  253 (319)
T KOG4714|consen  251 WDA  253 (319)
T ss_pred             EcC
Confidence            984

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.79  E-value=5e-06  Score=77.16  Aligned_cols=243  Identities=8%  Similarity=-0.022  Sum_probs=145.4

Q ss_pred             CCCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEe-cCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC
Q 012699          158 SGNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE-CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA  235 (458)
Q Consensus       158 ~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  235 (458)
                      ||++|+.-.. +..|..-+++..+... ....+....+..+.|. .++..+++.++..                      
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~-i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~----------------------  196 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDK-ITELPNVQGIHGLRPQKIPRTGYVFCNGEF----------------------  196 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeece-eEeCCCccCccccCccccCCccEEEeCccc----------------------
Confidence            6778777553 4555555655544332 1223333445555554 2455666655432                      


Q ss_pred             CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-
Q 012699          236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-  314 (458)
Q Consensus       236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  314 (458)
                           .+-+.|+|+.+...+...            +.+.+.|..+.+....+...+.   ...++++|+|+++++.+.+ 
T Consensus       197 -----~~PlpnDGk~l~~~~ey~------------~~vSvID~etmeV~~qV~Vdgn---pd~v~~spdGk~afvTsyNs  256 (635)
T PRK02888        197 -----RIPLPNDGKDLDDPKKYR------------SLFTAVDAETMEVAWQVMVDGN---LDNVDTDYDGKYAFSTCYNS  256 (635)
T ss_pred             -----ccccCCCCCEeeccccee------------EEEEEEECccceEEEEEEeCCC---cccceECCCCCEEEEeccCc
Confidence                 112334555443332222            5888889998888877766553   4667899999999888642 


Q ss_pred             ---CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC----CCeeEEeecCCcccCCCCCCC
Q 012699          315 ---GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN----QGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       315 ---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~  387 (458)
                         .++...+......+..+...  .+  -++.++|++...  .++.|.+.|..+    .......         .....
T Consensus       257 E~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y---------IPVGK  321 (635)
T PRK02888        257 EEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY---------VPVPK  321 (635)
T ss_pred             ccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE---------EECCC
Confidence               22333332222211111100  00  123457877665  367899999887    2222211         12344


Q ss_pred             ceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcc-----------cccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          388 CRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASG-----------MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      .++.+.++|||+++++++. ++++.+.|+...+..           .....-.......+|.++|....|---|..|-.|
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw  401 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW  401 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence            5788999999999988876 789999999875431           1111223456678999999988888899999999


Q ss_pred             eCC
Q 012699          456 SLS  458 (458)
Q Consensus       456 ~l~  458 (458)
                      +++
T Consensus       402 n~~  404 (635)
T PRK02888        402 NIE  404 (635)
T ss_pred             ehH
Confidence            973

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=5.8e-07  Score=84.01  Aligned_cols=273  Identities=16%  Similarity=0.108  Sum_probs=157.5

Q ss_pred             EEEeCCCCCEEEEEe----CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          152 CCRFSSSGNNIASAS----VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      -.+|+|...++|.++    ..|.|.|| .+++++..   ....+-.+.+++|+ +..-.|+.|-.-|.+.+|...+.+..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr---~Vt~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQR---DVTYPVHATSLCWH-PEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCc---ccccceehhhhccC-hHHHHHhhccccceeEEEecCCceee
Confidence            357899888888775    45788888 45666432   12223345779999 66778888888999999998876655


Q ss_pred             eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE----------------EeecCC
Q 012699          228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT----------------VLPLGE  291 (458)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~----------------~~~~~~  291 (458)
                      .....+.  .++..+.|+++|..++++..-             |.+.+|.......++                .+.+..
T Consensus        95 tv~~th~--a~i~~l~wS~~G~~l~t~d~~-------------g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~  159 (1416)
T KOG3617|consen   95 TVVETHP--APIQGLDWSHDGTVLMTLDNP-------------GSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY  159 (1416)
T ss_pred             eeccCCC--CCceeEEecCCCCeEEEcCCC-------------ceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC
Confidence            4444443  789999999999999998876             588888765211111                111100


Q ss_pred             ---------------CCCcEE------------EE--EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699          292 ---------------DPPAIT------------SL--CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL  342 (458)
Q Consensus       292 ---------------~~~~i~------------~~--~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~  342 (458)
                                     ....+-            ++  .-.|+|..++.++.+|+|+-.|-. +++....+.. +. ..+-
T Consensus       160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d-S~-vQmL  236 (1416)
T KOG3617|consen  160 DREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD-SE-VQML  236 (1416)
T ss_pred             ChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEcc-ch-HHHH
Confidence                           000000            00  012566778888888888888743 4444433321 11 1233


Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCCeeEE---------------eecC--------CcccCCCCCCCceeEEEEccCCC
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLW---------------TRNC--------SRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------~~~~--------~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      |.+-..-++..-.+-++.++-+...+....               ...|        +...........+.+++++..+.
T Consensus       237 f~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~  316 (1416)
T KOG3617|consen  237 FMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEI  316 (1416)
T ss_pred             HhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccce
Confidence            333322333222222222322221100000               0000        00001122455789999999999


Q ss_pred             EEEEEeCCccEEEEEccCC-C------cccccC---CCCCcEEEEEECCCCCeEEEec
Q 012699          400 RLLVTSGSVRAPIYQVRGH-A------SGMRTL---PHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       400 ~l~~~~~~~~i~i~~~~~~-~------~~~~~~---~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                      .|..|...|.+.+|---.. .      ....+.   .-.+.|+.+.|.|-.+.++.-+
T Consensus       317 ~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  317 RLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             EEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence            9999999999999964322 1      112222   2346899999999766555444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.76  E-value=4.5e-06  Score=81.46  Aligned_cols=240  Identities=14%  Similarity=0.156  Sum_probs=140.1

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      +.|.++.|..+...++.+..+|.|.+-|..+....   ........|.+++|+ ++++.++..+..+++.+-+- +-.++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e---ivg~vd~GI~aaswS-~Dee~l~liT~~~tll~mT~-~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE---IVGNVDNGISAASWS-PDEELLALITGRQTLLFMTK-DFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee---eeeeccCceEEEeec-CCCcEEEEEeCCcEEEEEec-cccch
Confidence            67999999999999999999999999887766543   233346789999999 78888888888777766532 11111


Q ss_pred             eeccCC---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEEEEcc
Q 012699          228 CDLNTT---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       228 ~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~  303 (458)
                      ......   ...+....+-|-.....+- |+.              |.....+...... ........|   =+.+.|--
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs~--------------gr~~~~~~~~~ek~~~~~~~~~~---~~~IsWRg  205 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFR-GSE--------------GRQAARQKIEKEKALEQIEQDDH---KTSISWRG  205 (1265)
T ss_pred             hccccccccccccccceecccccceeee-cch--------------hhhcccccccccccccchhhccC---CceEEEcc
Confidence            111110   0001112222222111111 000              1111111111000 011111222   36789999


Q ss_pred             CCCEEEEE-----ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeec
Q 012699          304 NGKILAAS-----AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       304 ~~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      ||.++++.     ...+.|+|||-+ +..-..-....+.=.+++|-|.|..+++-.   .|+.|.+|.-+.....     
T Consensus       206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-----  279 (1265)
T KOG1920|consen  206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-----  279 (1265)
T ss_pred             CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-----
Confidence            99999983     223789999976 443222222233446799999999888753   3667888886543211     


Q ss_pred             CCcccCCC-CCCCceeEEEEccCCCEEEE---EeCCccEEEEEccCC
Q 012699          376 CSRFCDPE-SSKSCRHEMALDVNGRRLLV---TSGSVRAPIYQVRGH  418 (458)
Q Consensus       376 ~~~~~~~~-~~~~~v~~~~~s~~g~~l~~---~~~~~~i~i~~~~~~  418 (458)
                        .+..+. .....+..++|+.++..|++   ......|++|...+.
T Consensus       280 --~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  280 --EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             --ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence              111111 22233889999999999998   444456999988654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=6.6e-06  Score=77.36  Aligned_cols=212  Identities=12%  Similarity=0.184  Sum_probs=137.5

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      +++..++.|+.+|.|.+++-. -+....++...+. .+..+....+...+++.+.|....        .-.+++|+++..
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~n--------p~llkiw~lek~  102 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGN--------PVLLKIWDLEKV  102 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCC--------ceEEEEeccccc
Confidence            678889999999999888632 3333555555432 345555555556788877775311        127999998643


Q ss_pred             ---c---ee---EEee--cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC----CceeeeeeCCCCCeEEEEEcCC
Q 012699          282 ---K---AM---TVLP--LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA----GLQITGWPAHDSAISSILFGPD  346 (458)
Q Consensus       282 ---~---~~---~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~~  346 (458)
                         .   +.   ..++  .+..+.++.+++.+.+-+.+|+|-.+|.|..+.-.-    +....-......+|+.+++..+
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence               1   22   1121  222456789999999999999999999999986321    2212222234679999999988


Q ss_pred             CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-
Q 012699          347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-  425 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-  425 (458)
                      ++.++....-..|.+|.+.... +       .......++..+.+..+++....+++++.+ .+++|+.++......+. 
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~-p-------~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~  253 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT-P-------SLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEV  253 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC-c-------ceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecC
Confidence            8873334445579999998543 1       122233566678888888876645555444 49999998877666665 


Q ss_pred             CCCCcEE
Q 012699          426 PHGAAIT  432 (458)
Q Consensus       426 ~h~~~v~  432 (458)
                      +|.....
T Consensus       254 g~kk~~~  260 (933)
T KOG2114|consen  254 GEKKEML  260 (933)
T ss_pred             CCeEEEE
Confidence            6655443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=4.8e-06  Score=71.34  Aligned_cols=250  Identities=12%  Similarity=0.075  Sum_probs=139.1

Q ss_pred             ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      ..++..|..++|+|.+..++..++.+..|++.|+++...+..+..+   ..+++++|..+....+.++..+         
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDlde~h~IYaGl~n---------  257 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLDERHVIYAGLQN---------  257 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccCCcceeEEeccC---------
Confidence            3455679999999877778999999999999999999888877766   5799999999988777777665         


Q ss_pred             ccceeEEEEECCCCcee-EEeecCCCCCcEEEEEE------ccCCCEEEEEecCCeEEEEeCCC--Cceeeeee-CCCCC
Q 012699          268 WGFASLTVWNMKTWKAM-TVLPLGEDPPAITSLCF------NHNGKILAASAVDGMIHMFDMSA--GLQITGWP-AHDSA  337 (458)
Q Consensus       268 ~~~g~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~-~~~~~  337 (458)
                         |.|.+||++..+.. ..+...-...+|..++.      .+.|.+|+....+  +..|++.-  +.....++ +..+.
T Consensus       258 ---G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~  332 (463)
T KOG1645|consen  258 ---GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI  332 (463)
T ss_pred             ---ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence               89999999864432 22211112223444332      2334455554443  45555432  22222222 22455


Q ss_pred             eEEEEEcCCCCEEE-EecCCCe------EEEE-eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE-EeCCc
Q 012699          338 ISSILFGPDETSIF-SLGSDGK------IIEW-SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV-TSGSV  408 (458)
Q Consensus       338 v~~~~~~~~~~~l~-~~~~dg~------i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~  408 (458)
                      ..++++.+-.+.++ +.-.+.+      +-.. |..++..+...+.. .+.........-..+.-.++.++++. +...+
T Consensus       333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~-~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT-YFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccc-ccCCcccccccccceeccccccEEEEecCCcc
Confidence            56666666444443 3222110      1110 11111111111000 00000000011112223445555554 44458


Q ss_pred             cEEEEEccCCCcccccCCCCCcEEEEEECCC-C-CeEEEecCCCcEEEEeC
Q 012699          409 RAPIYQVRGHASGMRTLPHGAAITTVDWHPT-L-PMFLTGSADHSVQVMSL  457 (458)
Q Consensus       409 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~-~~l~s~~~dg~v~iw~l  457 (458)
                      .+.+||..+.+... ..+-..+|.+++.... + .+|++-. |..++||..
T Consensus       412 ~lil~D~~s~evvQ-~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~  460 (463)
T KOG1645|consen  412 ELILQDPHSFEVVQ-TLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKN  460 (463)
T ss_pred             eeEEeccchhheee-ecccCcceeecceeecCCcchhhhee-cceEEEEec
Confidence            89999998875443 3345588888876543 2 3676666 447888764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=1.1e-07  Score=79.44  Aligned_cols=149  Identities=12%  Similarity=0.205  Sum_probs=108.6

Q ss_pred             EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-----eeeeccCCCCCC
Q 012699          163 ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-----VVCDLNTTDAFP  237 (458)
Q Consensus       163 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~~  237 (458)
                      ++.+.+-.|-+-|++++-..    .+...+.|.++.|. ..+++++.|+.+|.|..+|++.+.     +...+.   |.+
T Consensus       228 fs~G~sqqv~L~nvetg~~q----sf~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---h~S  299 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ----SFQSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---HDS  299 (425)
T ss_pred             ecccccceeEEEEeeccccc----ccccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---cCc
Confidence            55566777888898887543    33456788999998 778899999999999999998752     222222   236


Q ss_pred             ceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCce---eEEeecCCCCC--cEEEEEEccCCCEEEEE
Q 012699          238 SVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---MTVLPLGEDPP--AITSLCFNHNGKILAAS  311 (458)
Q Consensus       238 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---~~~~~~~~~~~--~i~~~~~~~~~~~l~~~  311 (458)
                      .|+++.... +++.+.+.+.+             |.|++||++--++   +..+  .+|..  .-.-+-..+....++++
T Consensus       300 svtslq~Lq~s~q~LmaS~M~-------------gkikLyD~R~~K~~~~V~qY--eGHvN~~a~l~~~v~~eeg~I~s~  364 (425)
T KOG2695|consen  300 SVTSLQILQFSQQKLMASDMT-------------GKIKLYDLRATKCKKSVMQY--EGHVNLSAYLPAHVKEEEGSIFSV  364 (425)
T ss_pred             chhhhhhhccccceEeeccCc-------------CceeEeeehhhhcccceeee--ecccccccccccccccccceEEEc
Confidence            788887777 67777777766             6999999987665   4444  45522  22233445667788889


Q ss_pred             ecCCeEEEEeCCCCceeeeeeCC
Q 012699          312 AVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       312 ~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      +.|...++|.++.+..+.+++..
T Consensus       365 GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  365 GDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             cCeeEEEEEecccCceeeccCCC
Confidence            99999999999999998887643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=7.1e-07  Score=83.44  Aligned_cols=115  Identities=21%  Similarity=0.252  Sum_probs=92.5

Q ss_pred             eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEE
Q 012699          239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH  318 (458)
Q Consensus       239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  318 (458)
                      .+-..|+|..++++.++....         ..|.+.||- .+|++....+.+-   .+++++|+|..-.|+.|-.-|.+.
T Consensus        18 sti~SWHPsePlfAVA~fS~e---------r~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPE---------RGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSD   84 (1416)
T ss_pred             ccccccCCCCceeEEEEecCC---------CCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeE
Confidence            445689999999998876532         226888873 4555555444333   368899999988899999999999


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      +|...+.+.......|..+|..+.|||+|..++++..-|.+.+|....
T Consensus        85 v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   85 VQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            999888777767778999999999999999999999999999998873

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.67  E-value=3.1e-08  Score=89.38  Aligned_cols=202  Identities=13%  Similarity=0.203  Sum_probs=134.7

Q ss_pred             CCCCeEEEEeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC----CCcEEEE
Q 012699          146 HTSPISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA----DGGIKAW  219 (458)
Q Consensus       146 h~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~w  219 (458)
                      ....+.|+++.-+  ...++.|..+|.|.+-.+..........+..+....++++|++-+.+.|++|-.    |..+.+|
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            3456778877654  346888999999999887765544344455566788999999888888888743    5689999


Q ss_pred             EcCCC--ceee--eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCC
Q 012699          220 NVDAK--RVVC--DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPP  294 (458)
Q Consensus       220 d~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~  294 (458)
                      |+.++  .+..  .+.. ........++|..+.+.+.+|...+             .++++|++..- ....+    ...
T Consensus       135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr-------------~~~ifdlRqs~~~~~sv----nTk  196 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSR-------------SVHIFDLRQSLDSVSSV----NTK  196 (783)
T ss_pred             ecccccCCCcccccccc-ccccCccccccccCcchhhcccccc-------------hhhhhhhhhhhhhhhhh----hhh
Confidence            99887  2221  1222 1123455788888888888888775             89999998422 22222    122


Q ss_pred             cEEEEEEcc-CCCEEEEEecCCeEEEEe-CCCC-ceeeeeeCCC----CCeEEEEEcCCCC-EEEEecC-CCeEEEEecc
Q 012699          295 AITSLCFNH-NGKILAASAVDGMIHMFD-MSAG-LQITGWPAHD----SAISSILFGPDET-SIFSLGS-DGKIIEWSLQ  365 (458)
Q Consensus       295 ~i~~~~~~~-~~~~l~~~~~dg~i~v~d-~~~~-~~~~~~~~~~----~~v~~~~~~~~~~-~l~~~~~-dg~i~iwd~~  365 (458)
                      .+..+..+| .+.|+++-. ||.|.+|| .++- .++..+...+    ..+..++|.|... .+++.+. .++|+++|+.
T Consensus       197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            456677888 677877754 99999999 4332 2333322222    2489999999433 4555555 6789999987


Q ss_pred             C
Q 012699          366 N  366 (458)
Q Consensus       366 ~  366 (458)
                      .
T Consensus       276 ~  276 (783)
T KOG1008|consen  276 V  276 (783)
T ss_pred             c
Confidence            4

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.66  E-value=1.7e-08  Score=91.06  Aligned_cols=233  Identities=16%  Similarity=0.236  Sum_probs=142.3

Q ss_pred             ceEEEEEecCC-CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccc
Q 012699          193 EIMSLEWECKS-DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       193 ~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      .+.|+++.... ...++.|..+|.|.+-.++...-...-..+.....+++++|.+-.. .++++ .+...        .+
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhr--------nd  128 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHR--------ND  128 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhc--------cc
Confidence            35566655333 3578889999999998877554332222233446788999998654 44444 33211        11


Q ss_pred             eeEEEEECCCC--ceeEEeecCC-CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-C
Q 012699          271 ASLTVWNMKTW--KAMTVLPLGE-DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-D  346 (458)
Q Consensus       271 g~i~i~d~~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~  346 (458)
                      -.+.|||+.++  .+.....+.. ......+++|..+.+++.+|.....+.++|++... .......+..+..+...| .
T Consensus       129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFS  207 (783)
T ss_pred             CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCC
Confidence            38999999876  3332222222 33456688999899999999999999999998422 111122244567788888 7


Q ss_pred             CCEEEEecCCCeEEEEe-ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEEEccCCCcc--
Q 012699          347 ETSIFSLGSDGKIIEWS-LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIYQVRGHASG--  421 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~~~~~~~~~--  421 (458)
                      +.++++.. ||.|.+|| .++-+.++..    ...........+..++|.|-.. .+++.. ..++|+++++......  
T Consensus       208 ~nY~cs~~-dg~iAiwD~~rnienpl~~----i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s  282 (783)
T KOG1008|consen  208 PNYFCSNS-DGDIAIWDTYRNIENPLQI----ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGS  282 (783)
T ss_pred             CCceeccc-cCceeeccchhhhccHHHH----HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccc
Confidence            77887665 99999999 4443333221    1112222334688999999543 344444 4578999987532110  


Q ss_pred             ------------cccCCCC--CcEEEEEECCCC
Q 012699          422 ------------MRTLPHG--AAITTVDWHPTL  440 (458)
Q Consensus       422 ------------~~~~~h~--~~v~~~~~~~~~  440 (458)
                                  ..+....  ..|.++.||+..
T Consensus       283 ~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s  315 (783)
T KOG1008|consen  283 ANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS  315 (783)
T ss_pred             ccccceeeecccccccccccccceeecCcCcCC
Confidence                        1111122  578888888766

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=1.7e-07  Score=78.22  Aligned_cols=144  Identities=16%  Similarity=0.259  Sum_probs=110.1

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA  223 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~  223 (458)
                      -.+.|.++.|...++++..|+.+|.|...|++....  ......+.|.+.|+++..-.-++++|++.+.+|.|++||.+.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            456789999998899999999999999999986522  223345678888888877634788999999999999999987


Q ss_pred             Cce---eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC--CcEEE
Q 012699          224 KRV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--PAITS  298 (458)
Q Consensus       224 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--~~i~~  298 (458)
                      -++   +.++..|-....-.-+...+....+++++.|             ...++|.++.+..+.++++....  ..+.+
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD-------------cytRiWsl~~ghLl~tipf~~s~~e~d~~s  397 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD-------------CYTRIWSLDSGHLLCTIPFPYSASEVDIPS  397 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCe-------------eEEEEEecccCceeeccCCCCccccccccc
Confidence            666   7777777655555556677777888888877             49999999999999888654322  23444


Q ss_pred             EEEc
Q 012699          299 LCFN  302 (458)
Q Consensus       299 ~~~~  302 (458)
                      ++|.
T Consensus       398 v~~~  401 (425)
T KOG2695|consen  398 VAFD  401 (425)
T ss_pred             eehh
Confidence            5554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1e-05  Score=76.10  Aligned_cols=182  Identities=10%  Similarity=0.127  Sum_probs=116.5

Q ss_pred             eeeeeccCCCC-eEEEEeCCCCCEEEEEeCCCc-----EEEEecCCCCCCC----c----ccc---ccCCCceEEEEEec
Q 012699          139 FLETFLGHTSP-ISCCRFSSSGNNIASASVDGT-----VRIWTYDSSTPAS----R----NAT---IYCGTEIMSLEWEC  201 (458)
Q Consensus       139 ~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~----~----~~~---~~~~~~v~~~~~~~  201 (458)
                      .++.++.+... |..+....+..+|++.+.|+.     ++||+++..+...    .    ...   .....++.+++.+ 
T Consensus        56 ~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-  134 (933)
T KOG2114|consen   56 LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-  134 (933)
T ss_pred             eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-
Confidence            44566677766 555555445578888887754     8999986542211    0    011   1124578888888 


Q ss_pred             CCCeEEEEEcCCCcEEEEEcC--CCceeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEEC
Q 012699          202 KSDRLLLIGTADGGIKAWNVD--AKRVVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      .+-..+++|-.+|.|..+.-+  ..+-.+....+....+|+.+++..++.. ++++...              .|.+|.+
T Consensus       135 ~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~--------------~V~~y~l  200 (933)
T KOG2114|consen  135 EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE--------------QVMLYSL  200 (933)
T ss_pred             ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc--------------eeEEEEe
Confidence            778889999999999988532  2222222333344478999999998886 3333332              8999999


Q ss_pred             CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCC
Q 012699          279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSA  337 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~  337 (458)
                      .... ...-....+...++|..+++....|++++ +..+.+||.....+-..+. +|...
T Consensus       201 ~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  201 SGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             cCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence            8444 22222455667789999987655466655 3469999988666666665 55543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.60  E-value=8.6e-05  Score=63.89  Aligned_cols=266  Identities=11%  Similarity=0.119  Sum_probs=158.4

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE----------cCCCcEEEEEcCCCceeeeccCCCC---
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG----------TADGGIKAWNVDAKRVVCDLNTTDA---  235 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~---  235 (458)
                      +.+.++|.++++.+....    .+-...+..+ ++++.++++          -..-.|.+||..+......+..+..   
T Consensus        17 ~rv~viD~d~~k~lGmi~----~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMID----TGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE----EESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEee----cccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            468888877765432111    1122334556 566666653          2344799999999888776655432   


Q ss_pred             --CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699          236 --FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV  313 (458)
Q Consensus       236 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (458)
                        ......+.++.++++++.......           ..|.+.|+...+.+.++...+.    ..+--+++ +-|.+-+.
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa-----------~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~-~~F~~lC~  155 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPA-----------TSVTVVDLAAKKVVGEIDTPGC----WLIYPSGN-RGFSMLCG  155 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSS-----------EEEEEEETTTTEEEEEEEGTSE----EEEEEEET-TEEEEEET
T ss_pred             eecccccceEEccCCcEEEEEccCCC-----------CeEEEEECCCCceeeeecCCCE----EEEEecCC-CceEEEec
Confidence              123345788889998877654432           4999999999999998876542    22222222 45777788


Q ss_pred             CCeEEEEeCC-CCceeeee----eCCCCCeE-EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC----CC
Q 012699          314 DGMIHMFDMS-AGLQITGW----PAHDSAIS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD----PE  383 (458)
Q Consensus       314 dg~i~v~d~~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~  383 (458)
                      ||.+.-..+. .|+...+.    ..-..++. .-++...+..++.-+.+|.|+--|+....... .........    ..
T Consensus       156 DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~  234 (342)
T PF06433_consen  156 DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADG  234 (342)
T ss_dssp             TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTT
T ss_pred             CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccC
Confidence            9999998887 45554322    11122222 33444455566668899999999998654322 111111100    01


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCC----------ccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEE-ecCCCc
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGS----------VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLT-GSADHS  451 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~~~dg~  451 (458)
                      -..+.-..+++++..+.|++.-..          ..|.++|+.+++.+.++.- ..++.+++.+.+.+ +|++ ...++.
T Consensus       235 WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~  313 (342)
T PF06433_consen  235 WRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT  313 (342)
T ss_dssp             EEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE
T ss_pred             cCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe
Confidence            112334458888877666654322          1578888888877666552 34688999999887 6654 456899


Q ss_pred             EEEEeC
Q 012699          452 VQVMSL  457 (458)
Q Consensus       452 v~iw~l  457 (458)
                      +.+||.
T Consensus       314 l~v~D~  319 (342)
T PF06433_consen  314 LDVYDA  319 (342)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            999985

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.60  E-value=0.00019  Score=58.31  Aligned_cols=261  Identities=15%  Similarity=0.173  Sum_probs=132.6

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      -|++++.|+..|.+.+-+.+++.........   ..|.+-+-...++.++..|+.|++.+..|..+..++...+...  .
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG--~  136 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG--G  136 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC--c
Confidence            3668999999999999999998765432222   2222211112568899999999999999999999888766554  2


Q ss_pred             ceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE--EEEccCCCEEEEEecC
Q 012699          238 SVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS--LCFNHNGKILAASAVD  314 (458)
Q Consensus       238 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d  314 (458)
                      .-.+.+..| ++.+.++...              |.+.--..+.... .++-......++.+  ++   -+..+..+.-|
T Consensus       137 ~f~sP~i~~g~~sly~a~t~--------------G~vlavt~~~~~~-~~~w~~~~~~PiF~splc---v~~sv~i~~Vd  198 (354)
T KOG4649|consen  137 TFVSPVIAPGDGSLYAAITA--------------GAVLAVTKNPYSS-TEFWAATRFGPIFASPLC---VGSSVIITTVD  198 (354)
T ss_pred             eeccceecCCCceEEEEecc--------------ceEEEEccCCCCc-ceehhhhcCCccccCcee---ccceEEEEEec
Confidence            233344555 3333333222              2222222222110 00000001111111  11   13456666778


Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEE-EEEc-CCCCEEEEecCCCeEE--------EEeccCCCeeEEeecCCcccCCCC
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISS-ILFG-PDETSIFSLGSDGKII--------EWSLQNQGQVLWTRNCSRFCDPES  384 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~-~~~~~l~~~~~dg~i~--------iwd~~~~~~~~~~~~~~~~~~~~~  384 (458)
                      |.+.-+| ..|+.+.++. ..++|.. -+-+ |..+.+..+..+..+.        +|..+.+........ ++      
T Consensus       199 G~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~-p~------  269 (354)
T KOG4649|consen  199 GVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS-PK------  269 (354)
T ss_pred             cEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC-cc------
Confidence            8888787 5566666543 2344321 1111 3334444444443332        344333211110000 00      


Q ss_pred             CCCceeEEEEc-c---CCCEEEEEeCCccEEEEEccCCCcccccCCCCCc---EEEEEE------CC---CCCeEEEecC
Q 012699          385 SKSCRHEMALD-V---NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA---ITTVDW------HP---TLPMFLTGSA  448 (458)
Q Consensus       385 ~~~~v~~~~~s-~---~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~---v~~~~~------~~---~~~~l~s~~~  448 (458)
                           ..++++ |   ..++|..++.||++.|.-...  .+.....|.+.   +..+..      +|   +| .|+.|+.
T Consensus       270 -----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcR  341 (354)
T KOG4649|consen  270 -----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCR  341 (354)
T ss_pred             -----cceeccCCCCcchhhhhhhcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEc
Confidence                 001111 1   145677888899888774432  22333333333   332222      22   34 4777888


Q ss_pred             CCcEEEEeCC
Q 012699          449 DHSVQVMSLS  458 (458)
Q Consensus       449 dg~v~iw~l~  458 (458)
                      |..|+-||++
T Consensus       342 DdYv~cldl~  351 (354)
T KOG4649|consen  342 DDYVRCLDLD  351 (354)
T ss_pred             cCeEEEEecc
Confidence            9999999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.59  E-value=0.00011  Score=66.92  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      .....+.+++++|+.+.|+.|+.||.|.+||...+-....           ...-.++.++|+|+|..+++|+..|.+.+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----------ka~~~P~~iaWHp~gai~~V~s~qGelQ~  325 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----------KAEFIPTLIAWHPDGAIFVVGSEQGELQC  325 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----------eecccceEEEEcCCCcEEEEEcCCceEEE
Confidence            4677899999999999999999999999999876532221           11233678999999999999999999999


Q ss_pred             EEccCCCcccc----------------cCCCCCcEEEEEECCCC
Q 012699          413 YQVRGHASGMR----------------TLPHGAAITTVDWHPTL  440 (458)
Q Consensus       413 ~~~~~~~~~~~----------------~~~h~~~v~~~~~~~~~  440 (458)
                      ||+.-......                ...+......+.|.+..
T Consensus       326 FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  326 FDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             EEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence            99864322111                12355677788888543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.58  E-value=0.00014  Score=68.75  Aligned_cols=205  Identities=12%  Similarity=0.144  Sum_probs=119.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccC---C-Cce--EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC---G-TEI--MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~v--~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  232 (458)
                      +..++.++.++.+.-.|..+++..........   . ..+  ..+..  .++..++.++.+|.|.-+|.++|+.+.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            34677777789999999888876543222111   0 000  01111  1226788888999999999999999887765


Q ss_pred             CCCCCc---e-eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC--------------
Q 012699          233 TDAFPS---V-LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP--------------  294 (458)
Q Consensus       233 ~~~~~~---v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--------------  294 (458)
                      ......   + ....+.  +..++.++.+...    ..+...|.+..+|..+++.+..+.......              
T Consensus       139 ~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~----~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~  212 (488)
T cd00216         139 NDQVPPGYTMTGAPTIV--KKLVIIGSSGAEF----FACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG  212 (488)
T ss_pred             CCCcCcceEecCCCEEE--CCEEEEecccccc----ccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence            532100   1 111122  1334444322100    001123689999999999888776532110              


Q ss_pred             ----cE-EEEEEccCCCEEEEEecCC------------------eEEEEeCCCCceeeeeeCCCCCeE------EEEEc-
Q 012699          295 ----AI-TSLCFNHNGKILAASAVDG------------------MIHMFDMSAGLQITGWPAHDSAIS------SILFG-  344 (458)
Q Consensus       295 ----~i-~~~~~~~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~~~~~~v~------~~~~~-  344 (458)
                          .+ ...++.+.+..+++++.++                  .|.-+|..+++.+-.++.-.....      ...+. 
T Consensus       213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~  292 (488)
T cd00216         213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD  292 (488)
T ss_pred             CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence                01 1345555667888887665                  799999999998877652111111      01111 


Q ss_pred             ---CCCC---EEEEecCCCeEEEEeccCCCeeE
Q 012699          345 ---PDET---SIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       345 ---~~~~---~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                         -++.   .++.++.+|.+...|.++++..-
T Consensus       293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             ccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence               1333   57888899999999999865443

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=1.2e-05  Score=75.19  Aligned_cols=185  Identities=15%  Similarity=0.233  Sum_probs=130.1

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      ...++|++++  +++|+-|.-+|.|++.+..... .   ....+...      . ..|.++++|+.||.+.+-.+-+.+.
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~---~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-K---TNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-c---cccccccc------c-cCCceEEEecCCCcEEEeeccCCcc
Confidence            4567777775  5689999999999999876542 1   12222222      3 6799999999999999999988887


Q ss_pred             eeeccCCCCCCceeeeeecCC-----CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          227 VCDLNTTDAFPSVLDLKCSPV-----EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      ..++..+   .++.+++++|+     .+.+++|+..             | +.++.-+-........+....++|.++.|
T Consensus       106 ~~~~df~---rpiksial~Pd~~~~~sk~fv~GG~a-------------g-lvL~er~wlgnk~~v~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen  106 ITQYDFK---RPIKSIALHPDFSRQQSKQFVSGGMA-------------G-LVLSERNWLGNKDSVVLSEGEGPIHSIKW  168 (846)
T ss_pred             ceeEecC---CcceeEEeccchhhhhhhheeecCcc-------------e-EEEehhhhhcCccceeeecCccceEEEEe
Confidence            7666555   47889999998     4567777664             4 66665432222222234456688999999


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCe------EEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAI------SSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      .  |+++|-++.+| |+|||+.+++.+..++.....+      ..+.|.++. .|+.|= ..+|++..++.
T Consensus       169 ~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~~  234 (846)
T KOG2066|consen  169 R--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIKK  234 (846)
T ss_pred             c--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEec
Confidence            6  77899888777 9999999988887776544433      356776665 454444 44788888873

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.57  E-value=8.8e-05  Score=67.04  Aligned_cols=277  Identities=13%  Similarity=0.089  Sum_probs=147.7

Q ss_pred             CCCCCEEEEEe---------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          156 SSSGNNIASAS---------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       156 ~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      |||+++++...         ..+.+.++|+.+++......   ....+....|+ ++++.++... ++.|.+++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---PPPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----EETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---Cccccccceee-cCCCeeEEEe-cCceEEEECCCCCe
Confidence            56776665532         24678899998865432111   14678889999 5566666654 56899999887754


Q ss_pred             eeeccCCCC---------------CCceeeeeecCCCCeEEEeecccCCCCcc------------------e---eecc-
Q 012699          227 VCDLNTTDA---------------FPSVLDLKCSPVEPIFVSAAASRRYGSSN------------------I---YSWG-  269 (458)
Q Consensus       227 ~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------~---~~~~-  269 (458)
                      .+.......               ...-..+-|+|+++.++....|...-...                  .   .+.. 
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n  155 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN  155 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence            432221100               12345688999999998877665311000                  0   0111 


Q ss_pred             -ceeEEEEECCCCceeEEeec---CCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceeeeeeC-CCC---
Q 012699          270 -FASLTVWNMKTWKAMTVLPL---GEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQITGWPA-HDS---  336 (458)
Q Consensus       270 -~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~-~~~---  336 (458)
                       .-.+.++|+.+++....-..   ......+..+.|.++++.|++.-.+     ..+.++|..++.....+.. ...   
T Consensus       156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~  235 (353)
T PF00930_consen  156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD  235 (353)
T ss_dssp             -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred             CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence             12566788887765432211   2334578999999999845444332     2577778877655333221 122   


Q ss_pred             CeEEEEEc-CCCC-EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce-eEEEEccCCCEEEE-EeCC--c--
Q 012699          337 AISSILFG-PDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR-HEMALDVNGRRLLV-TSGS--V--  408 (458)
Q Consensus       337 ~v~~~~~~-~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~-~~~~--~--  408 (458)
                      .-....|. +++. +|.....||.-.+|-+.........        .....-.| ..+.++++++.|+. +..+  .  
T Consensus       236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~--------lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r  307 (353)
T PF00930_consen  236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ--------LTSGDWEVTSILGWDEDNNRIYFTANGDNPGER  307 (353)
T ss_dssp             SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE--------SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred             eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec--------cccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence            22345554 6555 4445556776555555433322111        11223345 34788998877664 4432  2  


Q ss_pred             cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          409 RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       409 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      .++..++.....+..+......-..+.|||++++++-
T Consensus       308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            3444555512233333322222279999999997664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.57  E-value=2e-06  Score=81.23  Aligned_cols=192  Identities=12%  Similarity=0.204  Sum_probs=140.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      ++..++-|+-...+..+|+.+.+......  .....+.-+.   .+++.+.+|...|+|.+-|..+.+.++++..|.  +
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~--v~a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs--~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN--VSASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS--G  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeee--ccCCceEEEE---ecCcEEEeecccceEEeecCCcCceeeeeeccc--c
Confidence            34467777777778888888776543211  1222355555   568899999999999999999999999998886  4


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCe
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGM  316 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~  316 (458)
                      .+.+  |.-.|+.+++++...+.....++    ..|++||++..+.+.-+.+...+   .-+.|.|. ...+++.+..|.
T Consensus       219 siSD--fDv~GNlLitCG~S~R~~~l~~D----~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq  289 (1118)
T KOG1275|consen  219 SISD--FDVQGNLLITCGYSMRRYNLAMD----PFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQ  289 (1118)
T ss_pred             ceee--eeccCCeEEEeeccccccccccc----chhhhhhhhhhhccCCcccccCc---hhhhhcccccceEEEEecccc
Confidence            5554  45568899999987765555444    38999999998877766544332   45677884 457888889999


Q ss_pred             EEEEe---CCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          317 IHMFD---MSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       317 i~v~d---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      ..+.|   +.+. ..+..+......+..+.++++++.++.+..+|.|.+|.-.
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            99999   3332 1223333444559999999999999999999999999844

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.57  E-value=5.2e-06  Score=77.08  Aligned_cols=185  Identities=9%  Similarity=0.026  Sum_probs=118.9

Q ss_pred             CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      ..+.+.+.|.++.+...++....   ....+.++|+++++++.+.+...+         ..+...+..+......+....
T Consensus       213 y~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk~afvTsyNsE~G---------~tl~em~a~e~d~~vvfni~~  280 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNSEEG---------VTLAEMMAAERDWVVVFNIAR  280 (635)
T ss_pred             eeEEEEEEECccceEEEEEEeCC---CcccceECCCCCEEEEeccCcccC---------cceeeeccccCceEEEEchHH
Confidence            34667788888887777766653   456788999999998886432211         244444433322222222111


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-----CceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEecc
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-----GLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQ  365 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~  365 (458)
                          +  -++.++|++...+  ++.|.+.|.++     .+.+..+. -......+.++|||+++++++. +.++.+.|+.
T Consensus       281 ----i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~  351 (635)
T PRK02888        281 ----I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR  351 (635)
T ss_pred             ----H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence                0  1334578877763  67899999988     34455554 3556789999999998876665 8999999999


Q ss_pred             CCCeeEEeec--CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          366 NQGQVLWTRN--CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       366 ~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      +.+.......  .................+|+++|+...+-.-|.+|..|++..
T Consensus       352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            7654221100  000111112344566789999999888888899999999875

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.55  E-value=8.3e-05  Score=73.02  Aligned_cols=235  Identities=13%  Similarity=0.154  Sum_probs=138.4

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ..|.++.|. .+.+.++.+...|.|.+-|.++......-...   ..|.+++|+||+..++..+..              
T Consensus        69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~--------------  130 (1265)
T KOG1920|consen   69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGR--------------  130 (1265)
T ss_pred             cceEEEEEe-cccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCC--------------
Confidence            579999998 77778888899999999988877654332222   579999999999998888765              


Q ss_pred             eEEEEECCCCceeEEeecCCC---CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeeeeCCCCCeEEEEEcCCC
Q 012699          272 SLTVWNMKTWKAMTVLPLGED---PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAHDSAISSILFGPDE  347 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~  347 (458)
                      ..-++...+..++....+...   .+....+-|-.....| -|+ .|.....+....+. ...... .+.=++|.|--||
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~-~~~~~~IsWRgDg  207 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQ-DDHKTSISWRGDG  207 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhh-ccCCceEEEccCC
Confidence            333444444344333222110   1111222232211111 111 11111111111000 000011 2223568999999


Q ss_pred             CEEEEe-----cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccCCC
Q 012699          348 TSIFSL-----GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRGHA  419 (458)
Q Consensus       348 ~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~~~  419 (458)
                      +++++.     .....|++||-. + .+...        .+.....-.+++|-|.|..+++.-.   ++.|.++.-++..
T Consensus       208 ~~fAVs~~~~~~~~RkirV~drE-g-~Lns~--------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~  277 (1265)
T KOG1920|consen  208 EYFAVSFVESETGTRKIRVYDRE-G-ALNST--------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR  277 (1265)
T ss_pred             cEEEEEEEeccCCceeEEEeccc-c-hhhcc--------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence            999873     233789999987 2 11110        1122334567999999999988643   5679999887653


Q ss_pred             cccc---cCCCCCcEEEEEECCCCCeEEE---ecCCCcEEEEeC
Q 012699          420 SGMR---TLPHGAAITTVDWHPTLPMFLT---GSADHSVQVMSL  457 (458)
Q Consensus       420 ~~~~---~~~h~~~v~~~~~~~~~~~l~s---~~~dg~v~iw~l  457 (458)
                      .-..   ......+|..++|+.++..||.   ......|++|-+
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence            2211   1122344999999999999987   555666999975

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.4e-06  Score=74.51  Aligned_cols=168  Identities=15%  Similarity=0.215  Sum_probs=107.4

Q ss_pred             EEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC-CEE
Q 012699          273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE-TSI  350 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l  350 (458)
                      +++.+..+.+....+  ..+...|..++|+|... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. .++
T Consensus       175 v~~l~~~~fkssq~l--p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQIL--PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcc--cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence            777777776665533  45667899999999765 7888999999999999999888888887 889999998865 467


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc---ccCCC
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM---RTLPH  427 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~---~~~~h  427 (458)
                      +.|-..|.|.+||++....+...........+.-+-.++..-...+.|.+|+....+  ...|++.......   ...+.
T Consensus       252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~  329 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP  329 (463)
T ss_pred             EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence            788889999999999765443221111111110011111111334455566555444  4556554332211   22244


Q ss_pred             CCcEEEEEECCCCC-eEEE
Q 012699          428 GAAITTVDWHPTLP-MFLT  445 (458)
Q Consensus       428 ~~~v~~~~~~~~~~-~l~s  445 (458)
                      .+...+++.++..+ .|+|
T Consensus       330 pG~cismqy~~~snh~l~t  348 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLT  348 (463)
T ss_pred             CcceeeeeecCccceEEEE
Confidence            56777777777555 4444

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.52  E-value=4.2e-05  Score=70.63  Aligned_cols=167  Identities=16%  Similarity=0.158  Sum_probs=108.7

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      |+..|.--++ ...+++++-|+.-|.+.+++...+.....-  ..| ..+...+...+..+.++|.|+..|.|.++.+..
T Consensus        32 ~~~~v~lTc~-dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCV-DATEEYLAMGSSAGSVYLYNRHTGEMRKLK--NEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             CcceEEEEEe-ecCCceEEEecccceEEEEecCchhhhccc--ccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            5556666667 779999999999999999988877554111  111 345556667777889999999999999998877


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-  181 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-  181 (458)
                      ... +              +-.++..             .-..|...|+|++|++++..+++|...|+|..-.++.... 
T Consensus       108 ~~p-~--------------~~~~~t~-------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~  159 (726)
T KOG3621|consen  108 ELP-R--------------DLDYVTP-------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAF  159 (726)
T ss_pred             cCC-C--------------cceeecc-------------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhh
Confidence            331 1              1000000             0013889999999999999999999999999988876211 


Q ss_pred             -CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          182 -ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       182 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                       ...........+|..+...  .+.+|++...  .-.+.+.+.++
T Consensus       160 ~~~~q~il~~ds~IVQlD~~--q~~LLVStl~--r~~Lc~tE~et  200 (726)
T KOG3621|consen  160 LSKSQEILSEDSEIVQLDYL--QSYLLVSTLT--RCILCQTEAET  200 (726)
T ss_pred             ccccceeeccCcceEEeecc--cceehHhhhh--hhheeecchhH
Confidence             1112233345677777765  3334443332  23344554443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.4e-05  Score=74.70  Aligned_cols=186  Identities=12%  Similarity=0.114  Sum_probs=129.8

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ..+.+++++   +..++.|+.+|.+++++....-  .+...+.   +.     ...|.++++++.|             |
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s---~~-----~~~Gey~asCS~D-------------G   93 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHS---SS-----ILEGEYVASCSDD-------------G   93 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccc---cc-----ccCCceEEEecCC-------------C
Confidence            345666665   6789999999999999876442  1111111   11     5678899999988             5


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccC-----CCEEEEEecCCeEEEEeCCC---CceeeeeeCCCCCeEEEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-----GKILAASAVDGMIHMFDMSA---GLQITGWPAHDSAISSILF  343 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~  343 (458)
                      .+.|..+-+.+....+.+.   .++.+++++|+     .+.+++|+.-| +.++.-+-   ...+ .+....++|.++.|
T Consensus        94 kv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen   94 KVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW  168 (846)
T ss_pred             cEEEeeccCCccceeEecC---CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe
Confidence            9999998888877777543   56899999997     56899999888 77776432   1222 35566889999999


Q ss_pred             cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          344 GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       344 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .  |+++|-++++| |++||+...+.........   ...........+.|.++.+++ . +...+|+|..++
T Consensus       169 ~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  169 R--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIK  233 (846)
T ss_pred             c--CcEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEe
Confidence            6  77999888776 8999999876655433222   222233445668888776544 3 444568888776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.52  E-value=0.00026  Score=59.29  Aligned_cols=205  Identities=12%  Similarity=0.167  Sum_probs=114.0

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      ...+..++|+|.++.++++....+.|..++.+ |+.+..+.... ......+++..++.++++...+             
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~-------------   85 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERD-------------   85 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTT-------------
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCC-------------
Confidence            34589999997778889999999999999974 77777766543 3567889998888766655444             


Q ss_pred             eeEEEEECCCCc------eeEEeec--C-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC---Cceeee--------
Q 012699          271 ASLTVWNMKTWK------AMTVLPL--G-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITG--------  330 (458)
Q Consensus       271 g~i~i~d~~~~~------~~~~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~--------  330 (458)
                      +.+.++++....      ....+.+  . .+...+-.++|+|.++.|+++-...-..+|.+..   ...+..        
T Consensus        86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~  165 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD  165 (248)
T ss_dssp             TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred             CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence            488888773311      1122332  2 2345689999999888888877766666666543   111111        


Q ss_pred             eeCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCc-ccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          331 WPAHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-FCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                      .......+.+++++|. +.+++.+..+..+..+|.. ++ +........ .......-...-.++|.++|++. +.++-+
T Consensus       166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpN  242 (248)
T PF06977_consen  166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPN  242 (248)
T ss_dssp             HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTT
T ss_pred             ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCc
Confidence            1123346788999995 4566666778888888844 33 322222111 11111122346779999999554 455666


Q ss_pred             cEEEE
Q 012699          409 RAPIY  413 (458)
Q Consensus       409 ~i~i~  413 (458)
                      ..+++
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            66654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.52  E-value=7.8e-05  Score=62.39  Aligned_cols=204  Identities=10%  Similarity=0.149  Sum_probs=113.9

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                      ..+..++|.|+...+++.....            +.|..++. +++.+..+.+.+. .....+++..++.++++--.++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~------------~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~   87 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEP------------GEIYELSL-DGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQR   87 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTT------------TEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTE
T ss_pred             CCccccEEcCCCCeEEEEECCC------------CEEEEEcC-CCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCc
Confidence            4599999999877666665554            58888887 4788888887663 56889999888877776656899


Q ss_pred             EEEEeCCCCc------eeeeee-----CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC--CCeeEEeecCCcccCCC
Q 012699          317 IHMFDMSAGL------QITGWP-----AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN--QGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       317 i~v~d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~  383 (458)
                      +.++++....      ....+.     .++..+-.++|+|.++.|+.+-...-..+|.+..  .................
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~  167 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK  167 (248)
T ss_dssp             EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred             EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence            9999984321      111221     3455689999999887777776666677777764  11111111111111122


Q ss_pred             CCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcc-cccCC--C-----CCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          384 SSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASG-MRTLP--H-----GAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~-~~~~~--h-----~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      .....+.+++++|.. ++++....+..+..+|..+...- ..+..  |     -...-.|+|.++|++.+ .++-...++
T Consensus       168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~  246 (248)
T PF06977_consen  168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYR  246 (248)
T ss_dssp             --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEE
T ss_pred             ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEE
Confidence            334457889999964 55566666778888886554211 11111  1     13578899999997554 445555555


Q ss_pred             E
Q 012699          455 M  455 (458)
Q Consensus       455 w  455 (458)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.47  E-value=1.1e-05  Score=73.12  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=69.5

Q ss_pred             eEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699          272 SLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       272 ~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (458)
                      .-.+|+....+..  ....+ ..+..+.+.+++|+...|+.|+.||.|.+||...+...  +....-..+.++|+|+|..
T Consensus       237 d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  237 DSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcE
Confidence            3455665544332  22222 34467999999999999999999999999998765332  2234456789999999999


Q ss_pred             EEEecCCCeEEEEeccC
Q 012699          350 IFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~  366 (458)
                      +++|+..|.+.+||+.-
T Consensus       314 ~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCceEEEEEeec
Confidence            99999999999999874

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.47  E-value=0.00033  Score=61.63  Aligned_cols=288  Identities=13%  Similarity=0.108  Sum_probs=128.6

Q ss_pred             EEEeCCCCCEEEEEe-CCCc--EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          152 CCRFSSSGNNIASAS-VDGT--VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      .=+|.+||+.|+.++ .||.  +.+.|+.+++..+  .+...+.......++|. ++.++-......|+-.|+++.+...
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--LTdg~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--LTDGPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--CccCCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEE
Confidence            346778887665544 4555  5555676665442  12211222223455644 4555444455688999999988766


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCC---------cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS---------SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      .+..+......-....+.++..++.....+....         ....+...+.|.-.|+++++....+.   ....+..+
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH~  193 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGHV  193 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccCc
Confidence            6655553222222333455665544332221110         01122233678888999988877765   33568899


Q ss_pred             EEccCC-CEEEEEec---CC-eEEEEeCCC-CceeeeeeCCC--CCeEEEEEcCCCCEEEEe-----cCCCeEEEEeccC
Q 012699          300 CFNHNG-KILAASAV---DG-MIHMFDMSA-GLQITGWPAHD--SAISSILFGPDETSIFSL-----GSDGKIIEWSLQN  366 (458)
Q Consensus       300 ~~~~~~-~~l~~~~~---dg-~i~v~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~  366 (458)
                      .|+|.. .+|+.|.+   +. .-+||-+++ +...+.+..+.  ..+..=-|.|||+.|.--     +.+..|.-+|..+
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t  273 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT  273 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence            999954 45555443   11 124555433 33333333222  234445688999876542     2244577778877


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc----------------cEEEEEccCCCcc--c------
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV----------------RAPIYQVRGHASG--M------  422 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~----------------~i~i~~~~~~~~~--~------  422 (458)
                      .+..... ..          ..-..+..++||++++-=+.|.                -|++++++.....  .      
T Consensus       274 ~~~~~~~-~~----------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw  342 (386)
T PF14583_consen  274 GERRRLM-EM----------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSW  342 (386)
T ss_dssp             --EEEEE-EE-----------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-----
T ss_pred             CCceEEE-eC----------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcc
Confidence            6443211 10          0134566788998876433331                4566777654321  0      


Q ss_pred             ccC-CCCC-cEEEEEECCCCCeEE-EecCCCcEEEEe
Q 012699          423 RTL-PHGA-AITTVDWHPTLPMFL-TGSADHSVQVMS  456 (458)
Q Consensus       423 ~~~-~h~~-~v~~~~~~~~~~~l~-s~~~dg~v~iw~  456 (458)
                      ... ++.. .=-.+.|+||+++++ ++...|...||=
T Consensus       343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            011 1111 124579999999554 666778776663

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.46  E-value=1.3e-05  Score=73.09  Aligned_cols=185  Identities=17%  Similarity=0.187  Sum_probs=114.8

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCC
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDG  315 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  315 (458)
                      ..+....|+|++..++.........         ..+.++|+.+++........++   -...+|+|||++|+... .||
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~---------~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGC---------PRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCC---------ceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCC
Confidence            4577788999999877664432110         2799999999888887765544   35578999998876544 455


Q ss_pred             --eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCe--EEEEeccCCCeeEEeecCCcccCCCCCCCcee
Q 012699          316 --MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRH  390 (458)
Q Consensus       316 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  390 (458)
                        .|+++|+..+. +..+....+.-..=.|+|||++++..++ .|.  |.+++.........+.          ....-.
T Consensus       261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----------~~~~~~  329 (425)
T COG0823         261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF----------SGGGNS  329 (425)
T ss_pred             CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec----------cCCCCc
Confidence              57788887766 3334433444446789999998876655 555  5555555433211111          111112


Q ss_pred             EEEEccCCCEEEEEeCC-cc--EEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          391 EMALDVNGRRLLVTSGS-VR--APIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       391 ~~~~s~~g~~l~~~~~~-~~--i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      .-.|||||++|+..+.. |.  |.+.++.+... .+...+.......+|.|+++.+..
T Consensus       330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence            56799999999987753 43  66666655543 333334444445566677665443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.45  E-value=0.00017  Score=68.13  Aligned_cols=257  Identities=11%  Similarity=0.140  Sum_probs=140.6

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCC---Cce-EEEEEecCCCeEEEEEc---------CCCcEEEEEcCCCce
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCG---TEI-MSLEWECKSDRLLLIGT---------ADGGIKAWNVDAKRV  226 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~~~~  226 (458)
                      ..++.++.++.|.-+|.++++...........   ..+ ....+.  + .+++.++         .+|.+..+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            56777888899999999888765432221110   001 111222  2 3444443         467899999999998


Q ss_pred             eeeccCCCCCC------------------ce-eeeeecCCCCeEEEeecccCCCC-----cceeeccceeEEEEECCCCc
Q 012699          227 VCDLNTTDAFP------------------SV-LDLKCSPVEPIFVSAAASRRYGS-----SNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       227 ~~~~~~~~~~~------------------~v-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~i~i~d~~~~~  282 (458)
                      +..........                  .+ ...++.+.+..++.+..+.....     ........+.+.-+|.++++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            87765532100                  01 12344444555555554321000     00001112479999999999


Q ss_pred             eeEEeecCCCCC----cEEEEEEc----cCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699          283 AMTVLPLGEDPP----AITSLCFN----HNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       283 ~~~~~~~~~~~~----~i~~~~~~----~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      ....++...+..    ......+.    -++.   .+++++.+|.++.+|.++|+.+......   ...++.+|  ..++
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vy  342 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVY  342 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEE
Confidence            998876543311    00011111    1333   6788889999999999999988765421   11233444  2333


Q ss_pred             Ee------------------cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          352 SL------------------GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       352 ~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      .+                  ..+|.+.-.|+.+++ .+|...................-.....+..|++++.+|.++.+
T Consensus       343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al  421 (488)
T cd00216         343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF  421 (488)
T ss_pred             EccccccccCcccccCCCCCCCceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence            32                  236788888888764 44443322100000000011000112256788899999999999


Q ss_pred             EccCCCcccccC
Q 012699          414 QVRGHASGMRTL  425 (458)
Q Consensus       414 ~~~~~~~~~~~~  425 (458)
                      |..+++.+.+..
T Consensus       422 d~~tG~~lW~~~  433 (488)
T cd00216         422 DATTGKELWKFR  433 (488)
T ss_pred             ECCCCceeeEEE
Confidence            999998776654

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=4.6e-05  Score=69.79  Aligned_cols=227  Identities=13%  Similarity=0.093  Sum_probs=119.4

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      .+.+....-....+.++|+|++++.++ ||...|+.....+       ....+.-....|. .++ .+++-..++.|.++
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r-------~k~~G~g~~~vw~-~~n-~yAv~~~~~~I~I~   94 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR-------NKAFGSGLSFVWS-SRN-RYAVLESSSTIKIY   94 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTE-------EEEEEE-SEEEE--TSS-EEEEE-TTS-EEEE
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCc-------ccccCceeEEEEe-cCc-cEEEEECCCeEEEE
Confidence            344444556688999999999988854 7788888722211       1122444678898 444 46666668889996


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      .--.......+...   ..+..+..   |..+...+.+              .|.+||..+++.+..+...    +|..+
T Consensus        95 kn~~~~~~k~i~~~---~~~~~If~---G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v~----~vk~V  150 (443)
T PF04053_consen   95 KNFKNEVVKSIKLP---FSVEKIFG---GNLLGVKSSD--------------FICFYDWETGKLIRRIDVS----AVKYV  150 (443)
T ss_dssp             ETTEE-TT-----S---S-EEEEE----SSSEEEEETT--------------EEEEE-TTT--EEEEESS-----E-EEE
T ss_pred             EcCccccceEEcCC---cccceEEc---CcEEEEECCC--------------CEEEEEhhHcceeeEEecC----CCcEE
Confidence            32222222233322   12333433   7777776654              8999999999999988643    38999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCC-----------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAG-----------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      .|++++.+++..+.+ .+++++....           .....+..-...|.+.+|..+  .++-.+.. .++.  +.++.
T Consensus       151 ~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge  224 (443)
T PF04053_consen  151 IWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE  224 (443)
T ss_dssp             EE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE
T ss_pred             EEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC
Confidence            999999999988755 6788775432           023333332567888899766  44333333 6666  33332


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .....          ....++.-+.+.|..+.++....++.+..+.++
T Consensus       225 ~~~i~----------~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  225 TGIIA----------HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEE----------E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             cceEE----------EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            22111          112345667777877788888888888777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.41  E-value=0.00015  Score=65.48  Aligned_cols=223  Identities=14%  Similarity=0.147  Sum_probs=113.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccccc------CCCceEEEEEec----CCC---e
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIY------CGTEIMSLEWEC----KSD---R  205 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~----~~~---~  205 (458)
                      +...++...++|++++.|.-| ++|.|.++|.+.|.|++....+.......      ....+.++.|..    .++   -
T Consensus        78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            555566678999999998555 99999999999999998776554322222      234577888762    222   4


Q ss_pred             EEEEEcCCCcEEEEEcC--C-Cceeeecc-C-CCCCCceeeee-ecCCCCeEEEeec-------ccCCCCcceeecccee
Q 012699          206 LLLIGTADGGIKAWNVD--A-KRVVCDLN-T-TDAFPSVLDLK-CSPVEPIFVSAAA-------SRRYGSSNIYSWGFAS  272 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~--~-~~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~  272 (458)
                      .+++|+..|.+.+|.+.  . +.....+. . ..+..++..+. ++.+...-+.+..       .+..-...+.......
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            78899999999999874  1 21111111 0 01123343333 2222111111110       0001112233333458


Q ss_pred             EEEEECCCCceeEEeecCCCCCcEEEEEEc-----cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC----CCeEEEEE
Q 012699          273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFN-----HNGKILAASAVDGMIHMFDMSAGLQITGWPAHD----SAISSILF  343 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~v~~~~~  343 (458)
                      ++++...+.+......  ........+.+-     ..+..|++-..+|.+++|.+..-+.+..++-+.    ..+....+
T Consensus       237 irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             EEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             eEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            9999998877665443  222223334442     356678888899999999999888887766532    23445667


Q ss_pred             cCCCCEEEEecCCCeEEEEecc
Q 012699          344 GPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       344 ~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      +++|+.++-.+.. .+.++.+-
T Consensus       315 s~~Gdi~~~~gps-E~~l~sv~  335 (395)
T PF08596_consen  315 SRNGDIFYWTGPS-EIQLFSVW  335 (395)
T ss_dssp             -TTS-EEEE-SSS-EEEEEEEE
T ss_pred             CCCCCEEEEeCcc-cEEEEEEE
Confidence            8888877665543 44444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.0012  Score=60.22  Aligned_cols=239  Identities=12%  Similarity=0.188  Sum_probs=151.2

Q ss_pred             EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699          195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       195 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  274 (458)
                      ..+...+...+..++-.....+...+..............  .....++.++.+..+.....+.            +.+.
T Consensus        34 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~~~------------~~v~   99 (381)
T COG3391          34 GGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG--VYPAGVAVNPAGNKVYVTTGDS------------NTVS   99 (381)
T ss_pred             ceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC--ccccceeeCCCCCeEEEecCCC------------CeEE
Confidence            4455553333444443333345554444222222111111  2345678888888555554432            4999


Q ss_pred             EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699          275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      +.|..+.+.........   ....++++|+++.+.++..   ++.+.+.|..+.+.......-..+ ..++++|+|..++
T Consensus       100 vid~~~~~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vy  175 (381)
T COG3391         100 VIDTATNTVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVY  175 (381)
T ss_pred             EEcCcccceeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEE
Confidence            99988877777765433   4578999999988877766   689999999988888876554445 8999999999666


Q ss_pred             Eec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCC
Q 012699          352 SLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPH  427 (458)
Q Consensus       352 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h  427 (458)
                      ... .++.+.+.|........     ...............+.++|+|+++.+....   +.+...|..+.........-
T Consensus       176 v~~~~~~~v~vi~~~~~~v~~-----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~  250 (381)
T COG3391         176 VTNSDDNTVSVIDTSGNSVVR-----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV  250 (381)
T ss_pred             EEecCCCeEEEEeCCCcceec-----cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence            554 68999999976542221     0111122334456779999999988877665   48888888876544332211


Q ss_pred             CC-cEEEEEECCCCCeEEEecC-CCcEEEEe
Q 012699          428 GA-AITTVDWHPTLPMFLTGSA-DHSVQVMS  456 (458)
Q Consensus       428 ~~-~v~~~~~~~~~~~l~s~~~-dg~v~iw~  456 (458)
                      .. ....+..+|+|..+.+... .+.|.+-|
T Consensus       251 ~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         251 GSGAPRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             ccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            11 5667899999997776633 35555543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.36  E-value=0.00056  Score=61.86  Aligned_cols=228  Identities=15%  Similarity=0.147  Sum_probs=112.5

Q ss_pred             EEEEeCCCCCEEEEEeCC-CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          151 SCCRFSSSGNNIASASVD-GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      ..+-||||+++||....| ..|+.+.+........     ....+..+.+-.++... .    .-.+.++|+.+++....
T Consensus       104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YPk~G~~n-p----~v~l~v~~~~~~~~~~~  173 (353)
T PF00930_consen  104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYPKAGDPN-P----RVSLFVVDLASGKTTEL  173 (353)
T ss_dssp             BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE
T ss_pred             cceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccCCCCCcC-C----ceEEEEEECCCCcEEEe
Confidence            468999999999887543 4455444322111000     01123344432122111 1    11467788888775321


Q ss_pred             ccC---CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC--CCCCcEEEEEEc-c
Q 012699          230 LNT---TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG--EDPPAITSLCFN-H  303 (458)
Q Consensus       230 ~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~-~  303 (458)
                      -..   ......+..+.|.+++..++..-.++....        -.+.++|..++.........  .--.......+. +
T Consensus       174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~--------~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~  245 (353)
T PF00930_consen  174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR--------LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP  245 (353)
T ss_dssp             ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE--------EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred             eeccccCCCccCcccceecCCCcEEEEEEcccCCCE--------EEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence            111   122356889999999995555544432221        26777788776655444211  111112244554 5


Q ss_pred             CCC-EEEEEecCC--eEEEEeCCCCceeeeeeCCCCCeEE-EEEcCCCCEEE-EecCC--CeEEEEeccCC--CeeEEee
Q 012699          304 NGK-ILAASAVDG--MIHMFDMSAGLQITGWPAHDSAISS-ILFGPDETSIF-SLGSD--GKIIEWSLQNQ--GQVLWTR  374 (458)
Q Consensus       304 ~~~-~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~d--g~i~iwd~~~~--~~~~~~~  374 (458)
                      ++. ++.....+|  .|++++...+. ...+....-.|.. +.++++++.|+ ++..+  ..-.+|.+.-.  +.+. ..
T Consensus       246 ~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~L  323 (353)
T PF00930_consen  246 DGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CL  323 (353)
T ss_dssp             TSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ES
T ss_pred             CCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-ec
Confidence            554 444555666  56666766555 3455555566754 67788776554 44442  23444444332  2221 11


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      .+..     ...   ..+.|||+|++++....
T Consensus       324 T~~~-----~~~---~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  324 TCED-----GDH---YSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             STTS-----STT---EEEEE-TTSSEEEEEEE
T ss_pred             cCCC-----CCc---eEEEECCCCCEEEEEEc
Confidence            1111     111   68999999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=0.00031  Score=61.08  Aligned_cols=229  Identities=14%  Similarity=0.156  Sum_probs=132.7

Q ss_pred             EEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       198 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      .|.+..+.++.+--..+.|.-|+..+++... +..+   ..+.++..-..+..++++..               .+.+++
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p---~~~~~~~~~d~~g~Lv~~~~---------------g~~~~~   91 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSP---GGFSSGALIDAGGRLIACEH---------------GVRLLD   91 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECC---CCcccceeecCCCeEEEEcc---------------ccEEEe
Confidence            3554555567777778889999988665432 2222   22333333334444444432               566777


Q ss_pred             CCCCceeEEeec---CCCCCcEEEEEEccCCCEEEEEec-----------CCeEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 012699          278 MKTWKAMTVLPL---GEDPPAITSLCFNHNGKILAASAV-----------DGMIHMFDMSAGLQITGWPAHDSAISSILF  343 (458)
Q Consensus       278 ~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~  343 (458)
                      .+++.....+..   .......+.....|+|.+-+....           -|.++.+|. .+..++.+..+-..-+.|+|
T Consensus        92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~  170 (307)
T COG3386          92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF  170 (307)
T ss_pred             ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence            665555222211   112245677888999876654333           144555554 45666666665666788999


Q ss_pred             cCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEEccCCCcc
Q 012699          344 GPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQVRGHASG  421 (458)
Q Consensus       344 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~~~~~~~~  421 (458)
                      |||++.|+.+.. .+.|.-|++....-.....  .............-.++...+|.+.+.+...| .|..|+.+ ++.+
T Consensus       171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~--~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~  247 (307)
T COG3386         171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGR--RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL  247 (307)
T ss_pred             CCCCCEEEEEeCCCCeEEEEecCcccCccCCc--ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence            999988777655 5788888876311110000  01111112445566788889999886555554 89999998 4455


Q ss_pred             cccCCCCCcEEEEEEC-CCCC-eEEEecCC
Q 012699          422 MRTLPHGAAITTVDWH-PTLP-MFLTGSAD  449 (458)
Q Consensus       422 ~~~~~h~~~v~~~~~~-~~~~-~l~s~~~d  449 (458)
                      ....-+...+++++|- |+.+ +++|+...
T Consensus       248 ~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         248 GEIKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence            4444444678888884 4445 44444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.30  E-value=0.00024  Score=65.16  Aligned_cols=228  Identities=14%  Similarity=0.133  Sum_probs=111.0

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ..+..+.++ |+++.++. +.+|.-.+|.....+....       +......|.+.+. +++-...             .
T Consensus        33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~~~n~-yAv~~~~-------------~   89 (443)
T PF04053_consen   33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWSSRNR-YAVLESS-------------S   89 (443)
T ss_dssp             S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE-TSSE-EEEE-TT-------------S
T ss_pred             cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEecCcc-EEEEECC-------------C
Confidence            346788999 67776666 5678888887443333221       3456788888555 4444433             3


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      .|.++.--+.+....++.+.   .+..+-.   |.+|+..+. +.|.+||..+++.++++...  +|..+.|++++++++
T Consensus        90 ~I~I~kn~~~~~~k~i~~~~---~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen   90 TIKIYKNFKNEVVKSIKLPF---SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVA  160 (443)
T ss_dssp             -EEEEETTEE-TT-----SS----EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEE
T ss_pred             eEEEEEcCccccceEEcCCc---ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEE
Confidence            88886332323333343221   2344433   777777654 48999999999999988743  489999999999999


Q ss_pred             EecCCCeEEEEeccCCCeeEEe--ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699          352 SLGSDGKIIEWSLQNQGQVLWT--RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       352 ~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      ..+.+ .+.+++..........  .....+.........|.+.+|..+  .++..+.. .++.+ +.+.......  -..
T Consensus       161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl-~~Ge~~~i~~--ld~  233 (443)
T PF04053_consen  161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL-VNGETGIIAH--LDK  233 (443)
T ss_dssp             EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE-ETTEEEEEEE---SS
T ss_pred             EEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE-EcCCcceEEE--cCC
Confidence            88766 6777765432000000  000000000011334677777766  44444444 55552 2221111111  134


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ++.=+...|..+.+.....|+.|..+.++
T Consensus       234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  234 PLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             --EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            56666777877788888899998888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.29  E-value=1.6e-06  Score=81.70  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=111.6

Q ss_pred             CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--eEEEEeccCC
Q 012699          290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG--KIIEWSLQNQ  367 (458)
Q Consensus       290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~  367 (458)
                      ..+....+|++|+-+.++|++|+..|.|++|++.+|........|..+|+.+.-+.+|..+++.+.-.  -..+|++...
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence            35667899999999999999999999999999999999999999999999999999999877766533  4789998864


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMF  443 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l  443 (458)
                      ......            -..-.++.|+...+.-+.|+......+||+.++..+..++    +....-+...|+|+..++
T Consensus      1178 ~~~~Hs------------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1178 GGPRHS------------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             cCcccc------------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            332211            1123557788776666777777889999999987776644    233344778899998866


Q ss_pred             E
Q 012699          444 L  444 (458)
Q Consensus       444 ~  444 (458)
                      .
T Consensus      1246 l 1246 (1516)
T KOG1832|consen 1246 L 1246 (1516)
T ss_pred             e
Confidence            5

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.0027  Score=57.98  Aligned_cols=245  Identities=12%  Similarity=0.157  Sum_probs=157.0

Q ss_pred             CeEEEEeCCCCCEEEEEe-CCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          149 PISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      ....+...|++..+.... ....+..-+.. ....  ......+ .....++.++...+..+....+..|.+.|..+.+.
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~--~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTV--TQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-ccee--eeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            344567777775443332 22234444333 1111  1111111 33456677755555666666678999999888887


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK  306 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  306 (458)
                      ........   ....++++++++.+..+....          .++.+.+.|..+.+..........  + ..++++|+|.
T Consensus       109 ~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~----------~~~~vsvid~~t~~~~~~~~vG~~--P-~~~a~~p~g~  172 (381)
T COG3391         109 LGSIPVGL---GPVGLAVDPDGKYVYVANAGN----------GNNTVSVIDAATNKVTATIPVGNT--P-TGVAVDPDGN  172 (381)
T ss_pred             eeEeeecc---CCceEEECCCCCEEEEEeccc----------CCceEEEEeCCCCeEEEEEecCCC--c-ceEEECCCCC
Confidence            77666553   567899999998777766531          115999999999888888543332  2 8899999999


Q ss_pred             EEEEEe-cCCeEEEEeCCCCceee-----eeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCC
Q 012699          307 ILAASA-VDGMIHMFDMSAGLQIT-----GWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       307 ~l~~~~-~dg~i~v~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .+++.. .++.|.+.|........     .... ......+.++|+|..++..-..   +.+...|..+.........  
T Consensus       173 ~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~--  249 (381)
T COG3391         173 KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP--  249 (381)
T ss_pred             eEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc--
Confidence            776655 68899999976654442     1222 2344678999999976655443   5888888887543322111  


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcc
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASG  421 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~  421 (458)
                           .... ....+..+|+|+.+.+.... +.+.+.|..+....
T Consensus       250 -----~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         250 -----VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             -----cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence                 1112 45668999999999988554 78888888775433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.28  E-value=0.00057  Score=60.68  Aligned_cols=245  Identities=16%  Similarity=0.204  Sum_probs=112.5

Q ss_pred             CCCEEEEEe-CCCcEEEEecCCCCCCCcccc-cc-----------CCCceEEEEEecCCCeEEEEEcC------CCcEEE
Q 012699          158 SGNNIASAS-VDGTVRIWTYDSSTPASRNAT-IY-----------CGTEIMSLEWECKSDRLLLIGTA------DGGIKA  218 (458)
Q Consensus       158 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~-~~-----------~~~~v~~~~~~~~~~~~l~~~~~------dg~i~~  218 (458)
                      +.++|+..+ ..+.|.|.|+.+.....+... +.           ..+.+.|+    +++++++++-.      -|-+.+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl----p~G~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL----PDGRIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-----SS--EEEEEEEETTS-S--EEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec----CCccEEEEeccCCCCCCCCcEEE
Confidence            456676666 678899999875443222111 11           01122332    67777777522      256888


Q ss_pred             EEcCCCceeeeccCCCC-CCceeeeeecCCCCeEEEeecccCC----C---CcceeeccceeEEEEECCCCceeEEeecC
Q 012699          219 WNVDAKRVVCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRY----G---SSNIYSWGFASLTVWNMKTWKAMTVLPLG  290 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~g~i~i~d~~~~~~~~~~~~~  290 (458)
                      +|-++.+.......... ...-+++-+.|..+.+++.......    +   .......=..++.+||+.+.+.++++.+.
T Consensus       162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            88887777666555332 2346788899999988887643210    0   00000001159999999999999999887


Q ss_pred             CCCCcEEEEEEccC--CCEEEEE-ecCCeEEEEeC-CCCce----eeeeeCC-----------------CCCeEEEEEcC
Q 012699          291 EDPPAITSLCFNHN--GKILAAS-AVDGMIHMFDM-SAGLQ----ITGWPAH-----------------DSAISSILFGP  345 (458)
Q Consensus       291 ~~~~~i~~~~~~~~--~~~l~~~-~~dg~i~v~d~-~~~~~----~~~~~~~-----------------~~~v~~~~~~~  345 (458)
                      ........+.|..+  ..+=++| ....+|..|-- ..++.    +..+...                 ..-|+.|..|.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence            55445667777654  3333333 23445555443 33321    2222110                 24578999999


Q ss_pred             CCCEEEEecC-CCeEEEEeccCCCeeEEeecCC----------cccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          346 DETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCS----------RFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       346 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      |.++|+.+.. +|.|+.||+.+...+.......          .........+...-+..|.||+.|++.++
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            9999886655 9999999999876655432210          11112233455678999999999988753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.23  E-value=0.00048  Score=62.38  Aligned_cols=239  Identities=10%  Similarity=0.123  Sum_probs=118.6

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      .|..+.|. ....-|+++...|.|.+|.....+....    ....+-....+.+-+      ..+             +.
T Consensus         3 ~v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~----~~~~~~~~~~~~~~~------~~~-------------~~   58 (395)
T PF08596_consen    3 SVTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGN----REQPPDLDYNFRRFS------LNN-------------SP   58 (395)
T ss_dssp             -EEEEEEE-TTTTEEEEEETTS-EEEEEEEE----------------------S--------GGG-------------SS
T ss_pred             eEEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCc----cCCCcccCccccccc------ccC-------------CC
Confidence            47888998 5566688899999999998765543220    000011111110000      000             01


Q ss_pred             EEEEECCC---C----ceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--C------CCCC
Q 012699          273 LTVWNMKT---W----KAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--A------HDSA  337 (458)
Q Consensus       273 i~i~d~~~---~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~------~~~~  337 (458)
                      -.+-|+..   .    ......-++...++|++++.|.-| ++++|..+|.+.|.|++....+..-.  .      ....
T Consensus        59 ~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~  137 (395)
T PF08596_consen   59 GKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSY  137 (395)
T ss_dssp             -SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----
T ss_pred             cceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccC
Confidence            11111111   0    111222223446889999998555 99999999999999998877665422  1      2346


Q ss_pred             eEEEEEcC-----CC---CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE-EccC-----------
Q 012699          338 ISSILFGP-----DE---TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA-LDVN-----------  397 (458)
Q Consensus       338 v~~~~~~~-----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-----------  397 (458)
                      ++++.|+.     |+   -.+++|...|.+.+|.+.......+........  ..+...+..+. ++.+           
T Consensus       138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~  215 (395)
T PF08596_consen  138 VTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISA  215 (395)
T ss_dssp             EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHH
T ss_pred             eeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhH
Confidence            88888863     33   468889999999999886321111111100100  12223333322 2111           


Q ss_pred             ---------CCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC-----CCCCeEEEecCCCcEEEEeCC
Q 012699          398 ---------GRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH-----PTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       398 ---------g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~dg~v~iw~l~  458 (458)
                               -+-+++...+..++++...+.+...+.....-....+++-     ..+..|+.-..+|.|+++.|.
T Consensus       216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             hhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence                     1234555566779999988776655555333344455553     355688888899999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.20  E-value=0.00036  Score=62.33  Aligned_cols=224  Identities=12%  Similarity=0.107  Sum_probs=124.4

Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceee---eeecCC----CCeEEEeecccCCCCcceeeccceeEEEEECCCC----ce
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLD---LKCSPV----EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW----KA  283 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~----~~  283 (458)
                      .|++.|..+.+.+..+..... ..+.+   +.+..+    ..+++.|..-.....   .....|.|.++++...    ..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~---~~~~~Gri~v~~i~~~~~~~~~   78 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGED---PEPSSGRILVFEISESPENNFK   78 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTS---SS-S-EEEEEEEECSS-----E
T ss_pred             EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEeccccccc---ccccCcEEEEEEEEcccccceE
Confidence            577888777776665554433 23333   334432    456666654321110   0011289999999884    22


Q ss_pred             eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-eeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-QITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      +..+.....+++|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++...  +++++.|.....+.+
T Consensus        79 l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   79 LKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence            2222222345778888766 34 455543 5789999998777 332221 122355555554  569999988888888


Q ss_pred             EeccCCCe-eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC------c-cccc---CCCCCc
Q 012699          362 WSLQNQGQ-VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA------S-GMRT---LPHGAA  430 (458)
Q Consensus       362 wd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~------~-~~~~---~~h~~~  430 (458)
                      +....... .....       .......+.++.+-++++.++++..+|.+.++......      . ....   ......
T Consensus       154 ~~~~~~~~~l~~va-------~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~  226 (321)
T PF03178_consen  154 LRYDEENNKLILVA-------RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDI  226 (321)
T ss_dssp             EEEETTTE-EEEEE-------EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-
T ss_pred             EEEEccCCEEEEEE-------ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCc
Confidence            86664332 22111       11235568888888777899999999999999886321      0 1111   123467


Q ss_pred             EEEE---EECCC--CC------eEEEecCCCcEEE
Q 012699          431 ITTV---DWHPT--LP------MFLTGSADHSVQV  454 (458)
Q Consensus       431 v~~~---~~~~~--~~------~l~s~~~dg~v~i  454 (458)
                      |+++   ++.|.  +.      .++-++.+|.|.+
T Consensus       227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            8887   65562  22      3777888998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.18  E-value=0.00095  Score=57.68  Aligned_cols=274  Identities=14%  Similarity=0.132  Sum_probs=140.8

Q ss_pred             ceEEecccccccccc-----ceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC---------cccceee
Q 012699           48 SLLLSTNSSEACATT-----ATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG---------AGDIIQM  113 (458)
Q Consensus        48 ~~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~---------~~~~~~~  113 (458)
                      .+.+.|...++..+.     ..++.-+++++.+.++..- -..+.-|-....+.+||.......         .......
T Consensus        18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~-~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETF-YSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEE-EEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEE-EeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            577888877777643     3466667777766554211 000111222455667776543211         1112222


Q ss_pred             eccCCCCcCCCcceeccCCCeeee--------eeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCC-CCCCC
Q 012699          114 FNDGLYTENGRDAQGEEDFPEVKV--------DFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDS-STPAS  183 (458)
Q Consensus       114 ~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~-~~~~~  183 (458)
                      .+...++.+|+++.....-+...+        +.+..+.-   + -|.-.-|. .+.+.+-|.||.+.-..++. ++...
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---P-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---T-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC---C-CEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence            234457888888776544443332        12222110   0 12222232 24577788899998888874 33321


Q ss_pred             ccccccCC--Cce-EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCCC--------CCCceeeeeecCCCCe
Q 012699          184 RNATIYCG--TEI-MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTTD--------AFPSVLDLKCSPVEPI  250 (458)
Q Consensus       184 ~~~~~~~~--~~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~--------~~~~v~~~~~~~~~~~  250 (458)
                      +.....+.  .++ ..-++. ..+..++.-+.+|.|+--|+.......  .+....        ..+.-.-+++++..+.
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             eeccccCCCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            11111111  112 222333 344455667889999998887665321  111100        0112334677766655


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-EEEEE-ecCCeEEEEeCCCCcee
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAAS-AVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~v~d~~~~~~~  328 (458)
                      +......+..+...   ...-.|.++|+.+++.+..+.+..   ++.+++.+.+.+ +|++. ..++.+.+||..+++.+
T Consensus       252 lyvLMh~g~~gsHK---dpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  252 LYVLMHQGGEGSHK---DPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEEEE--TT-TT---S-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EEEEecCCCCCCcc---CCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            55443322211111   112478899999999999987642   477899998766 55444 45789999999999999


Q ss_pred             eeeeC
Q 012699          329 TGWPA  333 (458)
Q Consensus       329 ~~~~~  333 (458)
                      .++..
T Consensus       326 ~~~~~  330 (342)
T PF06433_consen  326 RSIEQ  330 (342)
T ss_dssp             EEE--
T ss_pred             eehhc
Confidence            88764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.0014  Score=60.00  Aligned_cols=189  Identities=17%  Similarity=0.206  Sum_probs=113.0

Q ss_pred             CceEEEEEecCCCeEEEEEc--CC-CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeec
Q 012699          192 TEIMSLEWECKSDRLLLIGT--AD-GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSW  268 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~--~d-g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (458)
                      ..+..-+|+|....+.+..-  .. ..+.++++++++........   ..-...+|+|+|+.++......          
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG~~l~f~~~rd----------  259 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDGSKLAFSSSRD----------  259 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCCCEEEEEECCC----------
Confidence            44555667733333222222  22 35899999988866655533   3445678999999888776543          


Q ss_pred             cceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699          269 GFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDMSAGLQITGWPAHDSAISSILFGP  345 (458)
Q Consensus       269 ~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  345 (458)
                      +.-.|.++|+..+.... +.  ...+.-..-.|+|+|++++..+.. |  .|.+++++.+.. ..+....+.-..-.|+|
T Consensus       260 g~~~iy~~dl~~~~~~~-Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp  335 (425)
T COG0823         260 GSPDIYLMDLDGKNLPR-LT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP  335 (425)
T ss_pred             CCccEEEEcCCCCccee-cc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC
Confidence            11378888888877444 32  222333477899999998876543 3  577777776544 44443333333778999


Q ss_pred             CCCEEEEecC-CCe--EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          346 DETSIFSLGS-DGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       346 ~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      ||++|+..+. +|.  |.+.|+.+.......          ........-.+.|+|+.+...+..
T Consensus       336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----------t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         336 DGDKIVFESSSGGQWDIDKNDLASGGKIRIL----------TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCEEEEEeccCCceeeEEeccCCCCcEEEc----------cccccCCCCCcCCCCceEEEeccC
Confidence            9999887765 344  666666554421111          111222335677788777665543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.13  E-value=0.0068  Score=55.80  Aligned_cols=198  Identities=16%  Similarity=0.139  Sum_probs=97.5

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee-----eeee
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL-----DLKC  244 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-----~~~~  244 (458)
                      .|+||+.... .+....  ...+.+.++.|+ . ...|+.-..||.+++||+.... ...+...-....|.     ...+
T Consensus        62 ~I~iys~sG~-ll~~i~--w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSSGK-LLSSIP--WDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCCCC-EeEEEE--ECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc
Confidence            4888876544 332211  223789999998 4 4456677799999999987443 11111111111222     2223


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEE-CCCCceeEEe-ecCC-------CCCcEEEEEEccCCCEEEEEecCC
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN-MKTWKAMTVL-PLGE-------DPPAITSLCFNHNGKILAASAVDG  315 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d-~~~~~~~~~~-~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg  315 (458)
                      ..+|-.+++..               +.+.+.. .........+ ....       .........++.+....+....++
T Consensus       136 ~~~GivvLt~~---------------~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~  200 (410)
T PF04841_consen  136 YKNGIVVLTGN---------------NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE  200 (410)
T ss_pred             CCCCEEEECCC---------------CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC
Confidence            33443333322               1333322 2211010110 0000       000000022344444445545555


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      .+.+.+-...+.   +. ..+++..|+.||+++++|.-..+|.+.+.+..-.+..... ...       ....+..+.|.
T Consensus       201 ~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~-~~~-------~~~~p~~~~WC  268 (410)
T PF04841_consen  201 TIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF-DTD-------SKSPPKQMAWC  268 (410)
T ss_pred             EEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe-ecC-------cCCCCcEEEEE
Confidence            666444332211   22 2468999999999999999999999988876433222211 111       22345667776


Q ss_pred             cCCCE
Q 012699          396 VNGRR  400 (458)
Q Consensus       396 ~~g~~  400 (458)
                      -+...
T Consensus       269 G~dav  273 (410)
T PF04841_consen  269 GNDAV  273 (410)
T ss_pred             CCCcE
Confidence            65443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.11  E-value=0.00021  Score=63.80  Aligned_cols=174  Identities=14%  Similarity=0.196  Sum_probs=110.7

Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEE---ccC----CCEEEEEec---------C-CeEEEEeCCCC----ceee
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCF---NHN----GKILAASAV---------D-GMIHMFDMSAG----LQIT  329 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~---~~~----~~~l~~~~~---------d-g~i~v~d~~~~----~~~~  329 (458)
                      ..|++.|..+.+.+..+.+... ..+.+++.   ..+    ..+|++|+.         . |.|.+|++...    ..+.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            3899999999998888877654 34555443   322    468888764         2 89999999874    1222


Q ss_pred             ee--eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          330 GW--PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       330 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      .+  ....++|++++-- +++ |+.+. .+.|.+|++...+.......         ........+....+.++++|...
T Consensus        81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~---------~~~~~~i~sl~~~~~~I~vgD~~  148 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF---------YDSPFYITSLSVFKNYILVGDAM  148 (321)
T ss_dssp             EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE---------E-BSSSEEEEEEETTEEEEEESS
T ss_pred             EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe---------ecceEEEEEEeccccEEEEEEcc
Confidence            11  2347889998865 444 44333 47899999998762222111         11112334444456799999988


Q ss_pred             ccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          408 VRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       408 ~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ..+.++..+.........   .....++++.|-++++.++.+..+|.+.++..
T Consensus       149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            888888665432211122   23456899999877778999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.11  E-value=0.0094  Score=56.77  Aligned_cols=162  Identities=12%  Similarity=0.111  Sum_probs=95.8

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCC--CceEE-EEEecCCCeEEEEEc------CCCcEEEEEcCCCceeeec
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEIMS-LEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~  230 (458)
                      ..++.++.|+.+.-.|..+++...........  ..+.+ -..  .++. ++.+.      .+|.|..+|.++|+.+..+
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--ECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence            35666777888888888888765432221111  11111 111  1333 44443      2689999999999988765


Q ss_pred             cCCCCC-----------------------------Ccee-eeeecCCCCeEEEeecccC-------CCCcceeeccceeE
Q 012699          231 NTTDAF-----------------------------PSVL-DLKCSPVEPIFVSAAASRR-------YGSSNIYSWGFASL  273 (458)
Q Consensus       231 ~~~~~~-----------------------------~~v~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~i  273 (458)
                      ......                             ..+. .+++.|...++..+..+..       .+....    ...|
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~----~~s~  273 (527)
T TIGR03075       198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY----TSSI  273 (527)
T ss_pred             cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc----ceeE
Confidence            543211                             0111 2466666666665553311       011111    1378


Q ss_pred             EEEECCCCceeEEeecCCCCC-------cEEEEEEccCCC---EEEEEecCCeEEEEeCCCCcee
Q 012699          274 TVWNMKTWKAMTVLPLGEDPP-------AITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~  328 (458)
                      .-.|+++++....++...|..       ...-+.+..+|+   .++.+..+|.+++.|.++++++
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            888999999998887655421       122233334665   7789999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.07  E-value=4.1e-05  Score=70.68  Aligned_cols=114  Identities=11%  Similarity=0.141  Sum_probs=87.3

Q ss_pred             CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       336 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ..|.--+++..+++++.|+.-|.+++|+-..+.....        ........+.....|++..++|+|+..|.|.++-+
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--------cccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence            3444445666788999999999999999876543221        12224455677889999999999999999999998


Q ss_pred             cCCCcccccC------CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          416 RGHASGMRTL------PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       416 ~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ....+.....      .|...|++++|++++..|++|...|+|..-.|
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            7754332222      37889999999999999999999999877554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.07  E-value=0.0034  Score=52.09  Aligned_cols=280  Identities=13%  Similarity=0.085  Sum_probs=148.1

Q ss_pred             CeEEEEe-CCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc-EEEEEcCCCc
Q 012699          149 PISCCRF-SSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG-IKAWNVDAKR  225 (458)
Q Consensus       149 ~v~~~~~-~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~  225 (458)
                      ++..-+| .+||++ +++.+.+|.+.- .+            .....-..++|+|....-++.+-.-|+ ..++|....+
T Consensus        36 avfasaf~~~dgs~g~a~~~eaGk~v~-~~------------~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~  102 (366)
T COG3490          36 AVFASAFDARDGSFGAATLSEAGKIVF-AT------------ALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQ  102 (366)
T ss_pred             chheeeeeccCCceeEEEEccCCceee-ee------------ecccccCCeecCCCCcceEEEEecCCceEEEECCCCCc
Confidence            3444444 457766 455666666532 11            112223456677666666666666554 4578888777


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ...++........--.-.|+|+|.+|.....|-.        .+.|.|-+||.+. ...+.-.+..|.-....+.+.+||
T Consensus       103 ~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd--------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DG  173 (366)
T COG3490         103 EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD--------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADG  173 (366)
T ss_pred             CcEEEecccCceeecccccCCCCcEEEeecCCCC--------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCC
Confidence            6665554432222223568999999988876632        2337999999984 333333334454456778999999


Q ss_pred             CEEEEEec------------------CCeEEEEeCCCCceeeee--e--CCCCCeEEEEEcCCCCEEEEecCCCe----E
Q 012699          306 KILAASAV------------------DGMIHMFDMSAGLQITGW--P--AHDSAISSILFGPDETSIFSLGSDGK----I  359 (458)
Q Consensus       306 ~~l~~~~~------------------dg~i~v~d~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~----i  359 (458)
                      +.++.+..                  .-++.+.|..+++.+.+.  +  .+.-.|+.++..+||..++.+-..|-    -
T Consensus       174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~p  253 (366)
T COG3490         174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLP  253 (366)
T ss_pred             cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCC
Confidence            99887632                  012333444444443322  2  23456888888888876655433221    0


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHP  438 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~  438 (458)
                      -+--.......+....... .........+-+++.+.+..+++..+- .+...+||..++..+....-  ..+..++  +
T Consensus       254 pLvg~~~~g~~l~~~~~pe-e~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva--~  328 (366)
T COG3490         254 PLVGHFRKGEPLEFLDLPE-EQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVA--A  328 (366)
T ss_pred             cceeeccCCCcCcccCCCH-HHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccce--e
Confidence            0000111111110000000 000112356777888877667666665 46788999998854322110  0111122  2


Q ss_pred             CCCeEEEecCCCcEEEE
Q 012699          439 TLPMFLTGSADHSVQVM  455 (458)
Q Consensus       439 ~~~~l~s~~~dg~v~iw  455 (458)
                      ...-++..+.+|.+..+
T Consensus       329 ~~~gf~vssg~G~~~~~  345 (366)
T COG3490         329 AKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             ccCceEEecCCceEEec
Confidence            23335555556666644

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.04  E-value=0.0033  Score=57.77  Aligned_cols=173  Identities=12%  Similarity=0.147  Sum_probs=93.7

Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEc
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFG  344 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~  344 (458)
                      .|.+|+... +.+..+....  +.+.++.|+.+..+ ++-..||.+++||+. |+.       +.........+....+.
T Consensus        62 ~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDEEL-VVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCC-CEeEEEEECC--CCEEEEEECCCCeE-EEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence            478887654 5566666655  67999999987654 455789999999986 333       11111112223333444


Q ss_pred             CCCCEEEEecCCCeEEEEeccCCCeeEEee---cCCcccCC-CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          345 PDETSIFSLGSDGKIIEWSLQNQGQVLWTR---NCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       345 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                      .+|-.++  ..++.+.+.  .+........   ..+..... ...........++.+....+....++.+++.+-.....
T Consensus       137 ~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~  212 (410)
T PF04841_consen  137 KNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ  212 (410)
T ss_pred             CCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence            4563333  334444333  3322221100   11111110 00111111134555666655556666666554433211


Q ss_pred             ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                          ....+++..++.||++++||.-..+|.+.|.+-
T Consensus       213 ----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  213 ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             ----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence                223468999999999999998888999887753

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.02  E-value=0.00069  Score=65.89  Aligned_cols=153  Identities=13%  Similarity=0.145  Sum_probs=97.7

Q ss_pred             CCCeEEEEE-cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          202 KSDRLLLIG-TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       202 ~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      .+..+|+.. .....|+-.|++.|+.+.....+.. .+|..++  |+.+.--..      ....+.+.++..+..||++-
T Consensus       491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~--p~~K~aqlt------~e~tflGls~n~lfriDpR~  561 (794)
T PF08553_consen  491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIA--PDSKFAQLT------NEQTFLGLSDNSLFRIDPRL  561 (794)
T ss_pred             cccceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeEec--ccccccccC------CCceEEEECCCceEEeccCC
Confidence            344444443 3457899999999999999888764 2344443  322110000      00111222224999999986


Q ss_pred             Cc--eeE-EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC
Q 012699          281 WK--AMT-VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG  357 (458)
Q Consensus       281 ~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  357 (458)
                      ..  .+. ...........+|++-+.+| +||+|+.+|.|++||--..+....+++-..+|..|..+.||+++++.+ +.
T Consensus       562 ~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~t  639 (794)
T PF08553_consen  562 SGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KT  639 (794)
T ss_pred             CCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cc
Confidence            43  221 11111233467888888777 899999999999999543344455667789999999999999987655 45


Q ss_pred             eEEEEecc
Q 012699          358 KIIEWSLQ  365 (458)
Q Consensus       358 ~i~iwd~~  365 (458)
                      .+.+++..
T Consensus       640 yLlLi~t~  647 (794)
T PF08553_consen  640 YLLLIDTL  647 (794)
T ss_pred             eEEEEEEe
Confidence            77777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.00  E-value=0.019  Score=56.14  Aligned_cols=274  Identities=15%  Similarity=0.179  Sum_probs=146.6

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecC--CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYD--SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      .|.-..|-.|..+|.++..||.+.-+-++  ++.............++.--.|+....+.++ +..|.-..+|.-+..-+
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf-a~sdrP~viY~~n~kLv  663 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF-ALSDRPTVIYSSNGKLV  663 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE-EeCCCCEEEEecCCcEE
Confidence            35555666678899999999998766554  3333222222233455555567634444444 44555555665433222


Q ss_pred             eeeccCCCCCCceeeee-ecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEE
Q 012699          227 VCDLNTTDAFPSVLDLK-CSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCF  301 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~  301 (458)
                      ...+...    .+..++ |+.  -...++++..              +.+++.-+..-+.+  +++....   ....+++
T Consensus       664 ~spls~k----ev~~~c~f~s~a~~d~l~~~~~--------------~~l~i~tid~iqkl~irtvpl~~---~prrI~~  722 (1096)
T KOG1897|consen  664 YSPLSLK----EVNHMCPFNSDAYPDSLASANG--------------GALTIGTIDEIQKLHIRTVPLGE---SPRRICY  722 (1096)
T ss_pred             EeccchH----HhhhhcccccccCCceEEEecC--------------CceEEEEecchhhcceeeecCCC---ChhheEe
Confidence            2222211    111111 111  1223444443              36666655543332  2233333   3566777


Q ss_pred             ccCCCEEEEEecC--------------CeEEEEeCCCCceeeeeeCC----CCCeEEEEEcCC-CCEEEEecC-------
Q 012699          302 NHNGKILAASAVD--------------GMIHMFDMSAGLQITGWPAH----DSAISSILFGPD-ETSIFSLGS-------  355 (458)
Q Consensus       302 ~~~~~~l~~~~~d--------------g~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~-------  355 (458)
                      .+....+++.+..              ..++++|-++-+.+...+..    .-.+.++.|..| +.++++|..       
T Consensus       723 q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~  802 (1096)
T KOG1897|consen  723 QESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN  802 (1096)
T ss_pred             cccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence            7644444443321              24677776665544332211    124555668776 667777652       


Q ss_pred             ---CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699          356 ---DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       356 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                         .|.|.++.+...+.+.....       ....+.+.++.. -+|++||.  -+..|++|+....+.+.....|..++.
T Consensus       803 ep~~GRIivfe~~e~~~L~~v~e-------~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~  872 (1096)
T KOG1897|consen  803 EPVNGRIIVFEFEELNSLELVAE-------TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPII  872 (1096)
T ss_pred             CcccceEEEEEEecCCceeeeee-------eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeE
Confidence               47788888776322211110       111222332221 26676654  445699999988866666667888899


Q ss_pred             EEEECCCCCeEEEecCCCcEEE
Q 012699          433 TVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      .+...-.|..++.|.-=+.+.+
T Consensus       873 aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  873 ALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             EEEEEecCcEEEEeeccceEEE
Confidence            9998888888888876665544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.96  E-value=0.01  Score=51.73  Aligned_cols=223  Identities=12%  Similarity=0.130  Sum_probs=120.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc------
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN------  231 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------  231 (458)
                      .++.|+.|..+| +.+++.......   .......+|..+...|.-+.+++.+  |+.+.++++..-.......      
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~---~~i~~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKP---TRILKLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccc---eeEeecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence            567899999988 889988322221   1222334488898884444444433  4999999987655443111      


Q ss_pred             ------CCCCCCceeeee---ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecCCCCCcEE
Q 012699          232 ------TTDAFPSVLDLK---CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLGEDPPAIT  297 (458)
Q Consensus       232 ------~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~~~~i~  297 (458)
                            .......+...+   -......++.+..              ..|.+|.....     +..+.+.+.   ..+.
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k--------------k~i~i~~~~~~~~~f~~~~ke~~lp---~~~~  142 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK--------------KKILIYEWNDPRNSFSKLLKEISLP---DPPS  142 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEEC--------------CEEEEEEEECCcccccceeEEEEcC---CCcE
Confidence                  001112233333   1122223333333              27777776542     455666544   4578


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC------------CCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH------------DSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      .++|.  ++.++.|..+ ...+.|+.++.....+...            ..++..+.. +++.+|++.  |..-.+.|..
T Consensus       143 ~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~  216 (275)
T PF00780_consen  143 SIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN  216 (275)
T ss_pred             EEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC
Confidence            89998  5578887755 4889999876554332211            123333444 345566543  3344444443


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      .. ...        .....-...+..+++  ...+|++... +.|.||++.+++.+
T Consensus       217 G~-~~r--------~~~i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  217 GE-PSR--------KSTIQWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELV  260 (275)
T ss_pred             CC-cCc--------ccEEEcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence            21 111        011112223455555  3457776655 44999999988543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.95  E-value=0.0064  Score=54.26  Aligned_cols=237  Identities=11%  Similarity=0.105  Sum_probs=112.6

Q ss_pred             CCeEEEEEc-CCCcEEEEEcCCC----ceeeeccC-----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          203 SDRLLLIGT-ADGGIKAWNVDAK----RVVCDLNT-----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       203 ~~~~l~~~~-~dg~i~~wd~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      ..++|+..+ ..+.|.+.|+.+.    +..+.+..     .........+.+.|+|..++++-.+..       +.+.|.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~-------G~g~Gg  158 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDAD-------GNGPGG  158 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETT-------S-S--E
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCC-------CCCCCc
Confidence            345566655 6789999998743    33333332     112234556778899999988766542       234478


Q ss_pred             EEEEECCCCceeEEeecCCC-CCcEEEEEEccCCCEEEEEe--------------------cCCeEEEEeCCCCceeeee
Q 012699          273 LTVWNMKTWKAMTVLPLGED-PPAITSLCFNHNGKILAASA--------------------VDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--------------------~dg~i~v~d~~~~~~~~~~  331 (458)
                      +.++|-++.+.......... ...-..+-+.|..+.+++..                    ...++.+||+.+.+.++++
T Consensus       159 f~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i  238 (461)
T PF05694_consen  159 FVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI  238 (461)
T ss_dssp             EEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred             EEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence            88999888777766654322 23456677888888888763                    2358999999999999988


Q ss_pred             eCCCC--CeEEEEEcC--CCCE-EEEecCCCeEEEEeccCCCe-----eEEeecCC-------c-ccCCCCCCCceeEEE
Q 012699          332 PAHDS--AISSILFGP--DETS-IFSLGSDGKIIEWSLQNQGQ-----VLWTRNCS-------R-FCDPESSKSCRHEMA  393 (458)
Q Consensus       332 ~~~~~--~v~~~~~~~--~~~~-l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-------~-~~~~~~~~~~v~~~~  393 (458)
                      .-...  ....+.|..  +..+ ++.+...++|..|--...+.     ++......       . +........-++.+.
T Consensus       239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred             ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence            75433  345666644  4444 33333455555554422221     11110000       0 000111145578999


Q ss_pred             EccCCCEEEEEeC-CccEEEEEccCCCcccccC----C---------------CCCcEEEEEECCCCCeEEEe
Q 012699          394 LDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL----P---------------HGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       394 ~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~----~---------------h~~~v~~~~~~~~~~~l~s~  446 (458)
                      +|.|.++|++.+. .|.++.||+.....+...-    +               -.+...-+..|-||+.|...
T Consensus       319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            9999999998886 7999999998754332111    1               12345778889999877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.94  E-value=0.021  Score=54.53  Aligned_cols=200  Identities=10%  Similarity=-0.006  Sum_probs=116.3

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCC--Cce-------EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEI-------MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v-------~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      +..|+.++.++.|.-.|..+++.+-........  ...       ..+++.   +..++.++.|+.+.-.|.++|+.+..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~  145 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWS  145 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEee
Confidence            346666777788888888887765432211100  000       112222   34677888899999999999999877


Q ss_pred             ccCCCCCC--ceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC-------------
Q 012699          230 LNTTDAFP--SVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP-------------  293 (458)
Q Consensus       230 ~~~~~~~~--~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-------------  293 (458)
                      ........  .+.+ ..+. ++ .++.+.....       ...+|.|.-+|.++++.+..+......             
T Consensus       146 ~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~-------~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~  216 (527)
T TIGR03075       146 KKNGDYKAGYTITAAPLVV-KG-KVITGISGGE-------FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG  216 (527)
T ss_pred             cccccccccccccCCcEEE-CC-EEEEeecccc-------cCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence            65432110  1111 1111 23 3333322100       011268999999999888765432211             


Q ss_pred             -----------------CcEEEEEEccCCCEEEEEecC-----C-----------eEEEEeCCCCceeeeeeCCCCCeE-
Q 012699          294 -----------------PAITSLCFNHNGKILAASAVD-----G-----------MIHMFDMSAGLQITGWPAHDSAIS-  339 (458)
Q Consensus       294 -----------------~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~~~v~-  339 (458)
                                       ..=..+++.|+..+++.+..+     +           .|.-.|+++|+..-.++.....+. 
T Consensus       217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD  296 (527)
T TIGR03075       217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD  296 (527)
T ss_pred             ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence                             001134677776777776522     2           677888999998777764322221 


Q ss_pred             --------EEEEcCCCC---EEEEecCCCeEEEEeccCCCee
Q 012699          340 --------SILFGPDET---SIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       340 --------~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                              -+....+|+   .++.+..+|.+.+.|..+++.+
T Consensus       297 ~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       297 YDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                    122224665   7889999999999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.94  E-value=0.0034  Score=50.50  Aligned_cols=214  Identities=10%  Similarity=0.110  Sum_probs=116.2

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeee-ccCCCCCCceeeeeecCCC--CeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVE--PIFVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      ..+.++.+--..|.|.-||..+++.... +...    +..++.+--.+  +.++.+...+            =.|--||.
T Consensus        25 ~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p----~~ag~ilpv~~~~q~~~v~~G~k------------f~i~nwd~   88 (310)
T KOG4499|consen   25 ERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP----PSAGFILPVEGGPQEFAVGCGSK------------FVIVNWDG   88 (310)
T ss_pred             ecceEEEEEeccCceehhhhhhhheEEEEEecC----cceeEEEEecCCCceEEEeecce------------EEEEEccc
Confidence            4456666666778888899887654332 2221    12222222111  1222222221            14555763


Q ss_pred             CC--CceeEE---eecCCCCCcEEEEEEccCCCEEEEEec-C---------CeEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 012699          279 KT--WKAMTV---LPLGEDPPAITSLCFNHNGKILAASAV-D---------GMIHMFDMSAGLQITGWPAHDSAISSILF  343 (458)
Q Consensus       279 ~~--~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~  343 (458)
                      ..  .....+   ........+.+.-..+|+|+++ .|.. |         |.++.|-..  ..+..+...-.--+.++|
T Consensus        89 ~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~W  165 (310)
T KOG4499|consen   89 VSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAW  165 (310)
T ss_pred             ccceeeeeeeccccCchHHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccc
Confidence            32  222222   1111223456677789999984 4432 2         334444332  112222222233467889


Q ss_pred             cCCCCEEEE-ecCCCeEEEEe--ccCC-----CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          344 GPDETSIFS-LGSDGKIIEWS--LQNQ-----GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       344 ~~~~~~l~~-~~~dg~i~iwd--~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      +.+.+.++. -+.+-+|.-||  ..++     +.+...+....+..     ...-.++...+|++.++.-..++|...|.
T Consensus       166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-----~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-----LEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-----CCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            887776554 45577787788  3332     22222222212111     12334566778999888888999999999


Q ss_pred             cCCCcccccCCCCCcEEEEEECCC
Q 012699          416 RGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       416 ~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      .+++.+..+.-....|++++|--.
T Consensus       241 ~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEecCC
Confidence            999887777666789999999543

>smart00320 WD40 WD40 repeats

Probab=97.91  E-value=4e-05  Score=43.44  Aligned_cols=37  Identities=46%  Similarity=0.888  Sum_probs=33.5

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      ....+..|...|.++.|.++++++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.89  E-value=0.022  Score=53.09  Aligned_cols=234  Identities=12%  Similarity=0.140  Sum_probs=122.1

Q ss_pred             EEEEEecCCCeEEEEE-cCCC----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699          195 MSLEWECKSDRLLLIG-TADG----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG  269 (458)
Q Consensus       195 ~~~~~~~~~~~~l~~~-~~dg----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (458)
                      ....++ +++++++.+ +..|    .++++|+++++.+...-..   .....+.|.+++..++....+......  ...-
T Consensus       127 ~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~  200 (414)
T PF02897_consen  127 GGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGY  200 (414)
T ss_dssp             EEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS---CCGC
T ss_pred             eeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccc--cCCC
Confidence            356677 556655543 4444    5999999999876432111   112239999999988777665422200  1111


Q ss_pred             ceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCC----ceeeeeeCCCCCeE
Q 012699          270 FASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAG----LQITGWPAHDSAIS  339 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~----~~~~~~~~~~~~v~  339 (458)
                      ...|+.|.+.+....  ..+...........+..++++++|+.....    ..+++.|+..+    .....+......+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            247899999876554  333322222226788999999998765432    45888888764    22333333333343


Q ss_pred             -EEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-C--ccEEE
Q 012699          340 -SILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-S--VRAPI  412 (458)
Q Consensus       340 -~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~--~~i~i  412 (458)
                       .+... .+.+++....   .+.|...++.+.....+..    .  ...+...+.-..+...+.+|+.... +  ..|++
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~----~--l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWT----V--LIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE----E--EE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccccee----E--EcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence             34333 4434333322   4567777777654311110    0  0112222233344445555555443 3  36889


Q ss_pred             EEcc-CCCcccccCCCCCcEEEEEECCCCC
Q 012699          413 YQVR-GHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       413 ~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      +++. +.........-.+.|..+...++++
T Consensus       354 ~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  354 YDLDDGKESREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred             EECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence            9998 4433333333445677777666666

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.88  E-value=0.00061  Score=66.23  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             ecCCeEEEEeCCCCceeeeeeCCCCC-eEEEEEcC-----CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          312 AVDGMIHMFDMSAGLQITGWPAHDSA-ISSILFGP-----DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       312 ~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      .....|+-.|++.|+.+..+..|... |..++-..     +...-+.|-.++.+..||.+-.+..+.......    -..
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~----Y~~  576 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ----YSS  576 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc----ccc
Confidence            34578999999999999999988754 55554221     123455677788899999986542211111111    123


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      .....+++-+.+| +||+|+.+|.|++||--+......+.+-..+|.+|..+.||++|++.+.. .+.+.+
T Consensus       577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID  645 (794)
T ss_pred             CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence            3446677766666 68899999999999965543333444667999999999999977766543 444443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.88  E-value=0.0012  Score=63.18  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=89.9

Q ss_pred             CcEEEEEEccCCCEEEEEe------cC--CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-CeEEEEec
Q 012699          294 PAITSLCFNHNGKILAASA------VD--GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-GKIIEWSL  364 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~------~d--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~  364 (458)
                      ..+...+++|+|+.++...      .|  ..|.+++.. +.. ..+.. ......-.|+|+|+.|++.+.. ..+++.+-
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            3578899999999887655      23  356666653 322 22222 2247889999999888877643 22333332


Q ss_pred             cCCCeeEEee-cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE---EEccCCCccc----ccC-CCCCcEEEEE
Q 012699          365 QNQGQVLWTR-NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI---YQVRGHASGM----RTL-PHGAAITTVD  435 (458)
Q Consensus       365 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i---~~~~~~~~~~----~~~-~h~~~v~~~~  435 (458)
                      ....++.... .......  .....|..+.|||||+.++.... ++|++   -....+....    .+. +-...+.++.
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence            2222221110 0001110  23456999999999999988774 67777   3333332111    111 2334468899


Q ss_pred             ECCCCCeEEEecCCCcEEEEeC
Q 012699          436 WHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       436 ~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      |.+++.++ .+..++...+|.+
T Consensus       504 W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        504 WRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EecCCEEE-EEecCCCCceEEE
Confidence            99999854 5555555555654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.018  Score=50.34  Aligned_cols=231  Identities=12%  Similarity=0.080  Sum_probs=126.5

Q ss_pred             EeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee---
Q 012699          154 RFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD---  229 (458)
Q Consensus       154 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---  229 (458)
                      .|.++.. ++.+--..+.|.-|+..++...    .......+.++... ..+..|+++..  -+.+++.+++.....   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~-d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI-DAGGRLIACEH--GVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee-cCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence            4666666 4455556778888887755432    23334444555544 44445555433  366667665554222   


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (458)
                      ..........++..+.|+|.+.+......  ..........|.++.+|. .+.....+.  .+-..-+.++||||++.|+
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~--~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~SpDg~tly  178 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYF--DLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCcc--ccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECCCCCEEE
Confidence            22222234577899999999888766510  000011112245555554 344444332  2233457899999998888


Q ss_pred             EEecC-CeEEEEeCCC--C----c-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCC-eEEEEeccCCCeeEEeecCCccc
Q 012699          310 ASAVD-GMIHMFDMSA--G----L-QITGWPAHDSAISSILFGPDETSIFSLGSDG-KIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       310 ~~~~d-g~i~v~d~~~--~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      .+... +.|.-|++..  +    + ....+....+..-.++...+|.+.+++-.+| .|..|+.. ++..... ..+   
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i-~lP---  253 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI-KLP---  253 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE-ECC---
Confidence            77654 7888887752  1    1 1122223345556677777887665444444 89999887 4333222 111   


Q ss_pred             CCCCCCCceeEEEEc-cCCCEEEEEeC
Q 012699          381 DPESSKSCRHEMALD-VNGRRLLVTSG  406 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s-~~g~~l~~~~~  406 (458)
                           ...+++++|- |+.+.|++.+.
T Consensus       254 -----~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         254 -----VKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             -----CCCCccceEeCCCcCEEEEEec
Confidence                 1234556663 45566655544

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=9.6e-05  Score=41.75  Aligned_cols=39  Identities=28%  Similarity=0.542  Sum_probs=34.4

Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      +++...+..|...|.++.|+|++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.76  E-value=0.0078  Score=57.82  Aligned_cols=194  Identities=12%  Similarity=0.031  Sum_probs=106.6

Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC---
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD---  314 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  314 (458)
                      .+.+.+++|++..++.........     ......|.+++... .. ..+. .+.  ......|+|+|+.+++....   
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~-----~d~~s~Lwv~~~gg-~~-~~lt-~g~--~~t~PsWspDG~~lw~v~dg~~~  420 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGA-----PDPASSLWVGPLGG-VA-VQVL-EGH--SLTRPSWSLDADAVWVVVDGNTV  420 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCC-----CCcceEEEEEeCCC-cc-eeee-cCC--CCCCceECCCCCceEEEecCcce
Confidence            577899999999887765311000     00113666666532 23 3332 222  37888999998877766422   


Q ss_pred             ---------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE---EeccCCCeeEEeecCCcccCC
Q 012699          315 ---------GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE---WSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       315 ---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~  382 (458)
                               +.+.+.++..++...   ...+.|..+.|||||..++... ++.|.+   -....+.  ........+  .
T Consensus       421 ~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l--~  492 (591)
T PRK13616        421 VRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREV--G  492 (591)
T ss_pred             EEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEe--e
Confidence                     234444444433322   2356799999999999888765 467776   3322222  111010011  1


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCcc--EEEEEccCCCcccccCC--CCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSVR--APIYQVRGHASGMRTLP--HGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~--i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                      ......+..+.|.+++.++ ++..++.  ++..++.+..... +..  ...++.+++=+++  .++....+|.+.
T Consensus       493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            1222335778999999965 5555444  4444455443221 122  3567888887763  355556666444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.75  E-value=0.017  Score=47.48  Aligned_cols=144  Identities=15%  Similarity=0.129  Sum_probs=97.7

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      ....+++.|+..+.+.--|..+|..........   ++.+-+.- -+..++.+...             |.+++.+.+++
T Consensus        21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~---RiE~sa~v-vgdfVV~GCy~-------------g~lYfl~~~tG   83 (354)
T KOG4649|consen   21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV---RIECSAIV-VGDFVVLGCYS-------------GGLYFLCVKTG   83 (354)
T ss_pred             CCceEEEEecCCceEEEecCCCCcEEeehhhCc---eeeeeeEE-ECCEEEEEEcc-------------CcEEEEEecch
Confidence            556788999999999999999999876544432   23322222 34556666655             69999999999


Q ss_pred             ceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      .....+...+.-  -......+++..+..|+.|++.+..|.++..++...+-..+...+-+..|....|+.+...|.+.-
T Consensus        84 s~~w~f~~~~~v--k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen   84 SQIWNFVILETV--KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             hheeeeeehhhh--ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence            887777543321  123456778999999999999999999998888887655544445556663334444555555444


Q ss_pred             Eec
Q 012699          362 WSL  364 (458)
Q Consensus       362 wd~  364 (458)
                      -..
T Consensus       162 vt~  164 (354)
T KOG4649|consen  162 VTK  164 (354)
T ss_pred             Ecc
Confidence            333

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.74  E-value=0.027  Score=49.94  Aligned_cols=225  Identities=12%  Similarity=0.139  Sum_probs=110.2

Q ss_pred             EEecCCC-eEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699          198 EWECKSD-RLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       198 ~~~~~~~-~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  274 (458)
                      +|. .++ ++|+.+..||  .+.+.|+.+++..+......  .......++|+.+.++.....+             .|+
T Consensus        42 ~ft-~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~-------------~l~  105 (386)
T PF14583_consen   42 CFT-DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGR-------------SLR  105 (386)
T ss_dssp             -B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTT-------------EEE
T ss_pred             CcC-CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCC-------------eEE
Confidence            456 445 4555555555  57777888888765544332  2233566778777766544332             899


Q ss_pred             EEECCCCceeEEeecCCCCCcEEEEEE--ccCCCEEEEEec----------------------CCeEEEEeCCCCceeee
Q 012699          275 VWNMKTWKAMTVLPLGEDPPAITSLCF--NHNGKILAASAV----------------------DGMIHMFDMSAGLQITG  330 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~----------------------dg~i~v~d~~~~~~~~~  330 (458)
                      -.|+++.+....+..+.  ..+....|  +.++..++-.-.                      ...|.-.|+.+|+....
T Consensus       106 ~vdL~T~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v  183 (386)
T PF14583_consen  106 RVDLDTLEERVVYEVPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV  183 (386)
T ss_dssp             EEETTT--EEEEEE--T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred             EEECCcCcEEEEEECCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence            99999988877776544  33433455  345655443211                      13466667777765544


Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEecCCC----e-EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          331 WPAHDSAISSILFGPDETSIFSLGSDG----K-IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg----~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      +. -...+..+.|+|....+++-+.+|    . -|||-++..+...+...      .......+..=-|.|||..|..-+
T Consensus       184 ~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~------~~~~~e~~gHEfw~~DG~~i~y~~  256 (386)
T PF14583_consen  184 FE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH------RRMEGESVGHEFWVPDGSTIWYDS  256 (386)
T ss_dssp             EE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---------TTEEEEEEEE-TTSS-EEEEE
T ss_pred             Ee-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee------cCCCCcccccccccCCCCEEEEEe
Confidence            44 356778899999655555443332    1 36777766554433221      112234455667899998776533


Q ss_pred             C-----CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          406 G-----SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       406 ~-----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      .     +..|.-+++.+.+...  .........+.-++||++++-=|.|
T Consensus       257 ~~~~~~~~~i~~~d~~t~~~~~--~~~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  257 YTPGGQDFWIAGYDPDTGERRR--LMEMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EETTT--EEEEEE-TTT--EEE--EEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred             ecCCCCceEEEeeCCCCCCceE--EEeCCceeeeEEcCCCCEEEecCCC
Confidence            2     2346666666654321  1222345566778999977753433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.73  E-value=0.039  Score=51.39  Aligned_cols=247  Identities=11%  Similarity=0.105  Sum_probs=126.5

Q ss_pred             eEEEEeCCCCCEEEEE-eCCC----cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----------C
Q 012699          150 ISCCRFSSSGNNIASA-SVDG----TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----------G  214 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g  214 (458)
                      +...+++|+++++|.+ +..|    ++++.|+.+++.+..  .+ .......+.|.+.+..++++...+          .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            4467889999998755 3333    599999998855421  11 111223389994444455554333          2


Q ss_pred             cEEEEEcCCCcee--eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEe
Q 012699          215 GIKAWNVDAKRVV--CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVL  287 (458)
Q Consensus       215 ~i~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~  287 (458)
                      .|+.|.+.+....  ..+...........+..++++++++........         ...+.+.|+...     ......
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~  273 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLS  273 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEe
Confidence            3778887766432  333333322225678899999988766554311         137888888874     222222


Q ss_pred             ecCCCCCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEec-CCC--e
Q 012699          288 PLGEDPPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLG-SDG--K  358 (458)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~  358 (458)
                      .  .. ..+....-+..+.+++....   .+.|...++.+...   ...+..+...+.-..+...+.+|+... .++  .
T Consensus       274 ~--~~-~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~  350 (414)
T PF02897_consen  274 P--RE-DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR  350 (414)
T ss_dssp             E--SS-SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred             C--CC-CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence            2  12 22333222234444443322   46787788877552   334555555333333334444555443 344  4


Q ss_pred             EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699          359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA  419 (458)
Q Consensus       359 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~  419 (458)
                      |+++++...........        ...+.+..+...+++..+.....    -.+++.||+.+++
T Consensus       351 l~v~~~~~~~~~~~~~~--------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  351 LRVYDLDDGKESREIPL--------PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEETT-TEEEEEEES--------SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EEEEECCCCcEEeeecC--------CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            88888872222221111        12233555666666665544332    2578888887764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.70  E-value=0.028  Score=48.79  Aligned_cols=277  Identities=11%  Similarity=0.112  Sum_probs=124.7

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccC----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      ..++..|.|..+..-++.| ..++|  +....+-..-.......    .....++.|. . ...+++|. .+ +.+...+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~-~~g~ivG~-~g-~ll~T~D   88 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-G-NEGWIVGE-PG-LLLHTTD   88 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEE-T-TEEEEEEE-TT-EEEEESS
T ss_pred             CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEec-C-CceEEEcC-Cc-eEEEecC
Confidence            4578899998555555655 45654  33333222111111111    1236677776 3 44555543 34 4444445


Q ss_pred             CCceeeeccCCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEE
Q 012699          223 AKRVVCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       223 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~  300 (458)
                      .|+.-..+..... ......+....++...+.+..              |  .+|...++. .-..+ .......+..+.
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------------G--~iy~T~DgG~tW~~~-~~~~~gs~~~~~  151 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR--------------G--AIYRTTDGGKTWQAV-VSETSGSINDIT  151 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT------------------EEEESSTTSSEEEE-E-S----EEEEE
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--------------C--cEEEeCCCCCCeeEc-ccCCcceeEeEE
Confidence            5554433322111 122333333333333332221              2  234333322 22222 234446788899


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      -+++|++++++.......-||--...-...-+.-...|.+|.|.|++...+.+ ..|.|++=+..... ..+..   ...
T Consensus       152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~-~~w~~---~~~  226 (302)
T PF14870_consen  152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG-ETWSE---PII  226 (302)
T ss_dssp             E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-EEE------B-
T ss_pred             ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-ccccc---ccC
Confidence            99999999888655555677754322222223346789999999998765544 78888887722211 11111   111


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      ........+..++|.+++...++|+.. .+ +...+.++.-.+..   .-...+..+.|.++.+-+| .+.+|.|.-|
T Consensus       227 ~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  227 PIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             CcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            122344558899999998887765544 33 33444443222221   3345788999977655454 5568887655

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.68  E-value=0.031  Score=48.74  Aligned_cols=228  Identities=18%  Similarity=0.195  Sum_probs=125.1

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      ..++.|+.|+.+| +.+++... .........    ..|..+...|+-+.++.-+.              +.+.++++..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLsd--------------~~l~~~~L~~   65 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLSD--------------GQLYVYDLDS   65 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEcC--------------CccEEEEchh
Confidence            3567899999998 99999832 222222222    34889999998887776654              3999999876


Q ss_pred             CceeEEee------------cCCCCCcEEEEE--EccCCCEEEEEecCCeEEEEeCCCC-----ceeeeeeCCCCCeEEE
Q 012699          281 WKAMTVLP------------LGEDPPAITSLC--FNHNGKILAASAVDGMIHMFDMSAG-----LQITGWPAHDSAISSI  341 (458)
Q Consensus       281 ~~~~~~~~------------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~~~  341 (458)
                      ........            .-.....+...+  -.+.+...++......|.+|.....     +..+.+.- ...+..+
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i  144 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI  144 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence            54443110            001122344444  1123333333444568888887653     34455543 4778899


Q ss_pred             EEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC-c--ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          342 LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS-R--FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       342 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      +|.  ++.++.+..+ ...+.|+.+........... .  +........++..+..+ ++.+|++-  +..-.+.+..+.
T Consensus       145 ~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~  218 (275)
T PF00780_consen  145 AFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGE  218 (275)
T ss_pred             EEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCC
Confidence            998  4567777654 47888998543321110000 0  00111112233333333 45666543  333444555544


Q ss_pred             CcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       419 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ........-...+.++++.  .++|+..+.+ .|.||++.
T Consensus       219 ~~r~~~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~  255 (275)
T PF00780_consen  219 PSRKSTIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLE  255 (275)
T ss_pred             cCcccEEEcCCchhEEEEE--CCEEEEECCC-EEEEEECc
Confidence            2221223344566777774  4577776665 59999873

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00024  Score=65.05  Aligned_cols=77  Identities=16%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeE-EEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAIS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      ..+.-+.|+|.-.++|.+..+|.|.++.++ .+.+.+++.|...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            457889999999999999999999999988 788888887888887 99999999999999999999999999875443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.66  E-value=0.025  Score=47.17  Aligned_cols=249  Identities=14%  Similarity=0.084  Sum_probs=143.3

Q ss_pred             EEEeCCCC-CEEEEEeCCCc-EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCC
Q 012699          152 CCRFSSSG-NNIASASVDGT-VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAK  224 (458)
Q Consensus       152 ~~~~~~~~-~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~  224 (458)
                      .++|+|.. .-++.+-.-|+ ..++|..+.+...........+-.-.-.|+ +++.+|+..-.|     |.|-+||.+.+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccc
Confidence            47788854 34666666665 467888777655332222222222233577 788888876443     78999998844


Q ss_pred             c-eeeeccCCCCCCceeeeeecCCCCeEEEeecccC----CCCc-ceeeccceeEEEEECCCCceeEEeecC--CCCCcE
Q 012699          225 R-VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR----YGSS-NIYSWGFASLTVWNMKTWKAMTVLPLG--EDPPAI  296 (458)
Q Consensus       225 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~i  296 (458)
                      - .+..+..+.  -....+.+.+||..++.+...-.    .++. +-.....-.+.+.|..++..+....+.  .+.-.+
T Consensus       151 fqrvgE~~t~G--iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi  228 (366)
T COG3490         151 FQRVGEFSTHG--IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI  228 (366)
T ss_pred             cceecccccCC--cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence            2 333344433  35677999999999887765211    1111 111122246777887888887776665  455678


Q ss_pred             EEEEEccCCCEEEEEecCCe-----EEEEeCCCCceeeeeeC-------CCCCeEEEEEcCCCCEEEEecC-CCeEEEEe
Q 012699          297 TSLCFNHNGKILAASAVDGM-----IHMFDMSAGLQITGWPA-------HDSAISSILFGPDETSIFSLGS-DGKIIEWS  363 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd  363 (458)
                      ..++..+||...+.+-..|.     -.+=-...++++.-+..       ....|-+++.+.+..+++..+- .+...+||
T Consensus       229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d  308 (366)
T COG3490         229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD  308 (366)
T ss_pred             eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence            89999999876665543331     11111123444433322       1245677888765555555544 55688999


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      ..++..+.....             .-+.-.-+...-+++.+..|.+.++.-.
T Consensus       309 a~tG~vv~~a~l-------------~daaGva~~~~gf~vssg~G~~~~~s~~  348 (366)
T COG3490         309 AATGAVVSEAAL-------------PDAAGVAAAKGGFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             cCCCcEEecccc-------------cccccceeccCceEEecCCceEEecccc
Confidence            998754432110             1112233445556777888888877443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.65  E-value=0.015  Score=48.79  Aligned_cols=166  Identities=12%  Similarity=0.125  Sum_probs=109.7

Q ss_pred             CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699          291 EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      +....+.++.|+|+.+.|++......-.|+=...|+.+.+++-. -...-.|.+..++.+.++--.++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            33455999999999998888776666666655668888887621 22345678888887777777799999998887655


Q ss_pred             eEEeecC-CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CC-------CCcEEEEEECC
Q 012699          370 VLWTRNC-SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PH-------GAAITTVDWHP  438 (458)
Q Consensus       370 ~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h-------~~~v~~~~~~~  438 (458)
                      ....... ..+......+...-.++|+|..+.|.++-+.+-+.||.+..........   .+       -..|.++.|++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            5433321 1122222235667889999999999999988878888776443221111   12       23477788887


Q ss_pred             CCC-eEEEecCCCcEEEEe
Q 012699          439 TLP-MFLTGSADHSVQVMS  456 (458)
Q Consensus       439 ~~~-~l~s~~~dg~v~iw~  456 (458)
                      ... +|+-+.+++.+.-.|
T Consensus       243 ~~~~LLVLS~ESr~l~Evd  261 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVD  261 (316)
T ss_pred             CCCcEEEEecCCceEEEEe
Confidence            544 666666666665444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.65  E-value=0.019  Score=55.13  Aligned_cols=193  Identities=12%  Similarity=0.102  Sum_probs=105.5

Q ss_pred             CCCEEEEEeCCC------cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-C-----cEEEEEcCCCc
Q 012699          158 SGNNIASASVDG------TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-G-----GIKAWNVDAKR  225 (458)
Q Consensus       158 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~~wd~~~~~  225 (458)
                      .+.+++.|+.++      .+..+|..++..... ........-.+++..  ++.+.++|+.| |     .+..||..+++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            455667777663      577888877644321 112222223444443  56888899988 3     57788988887


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ....-....  .+...-...-+|.+.+.|+.++...-        ..+..||..+.+....-..........  ...-+|
T Consensus       361 W~~~a~M~~--~R~~~~v~~l~g~iYavGG~dg~~~l--------~svE~YDp~~~~W~~va~m~~~r~~~g--v~~~~g  428 (571)
T KOG4441|consen  361 WTPVAPMNT--KRSDFGVAVLDGKLYAVGGFDGEKSL--------NSVECYDPVTNKWTPVAPMLTRRSGHG--VAVLGG  428 (571)
T ss_pred             eeccCCccC--ccccceeEEECCEEEEEecccccccc--------ccEEEecCCCCcccccCCCCcceeeeE--EEEECC
Confidence            544222221  12222222335677777777742211        378999998765544332222111122  222367


Q ss_pred             CEEEEEecCC------eEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCCCe-----EEEEeccCC
Q 012699          306 KILAASAVDG------MIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSDGK-----IIEWSLQNQ  367 (458)
Q Consensus       306 ~~l~~~~~dg------~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~  367 (458)
                      +..++|+.++      ++..||..+.+...  .+........ ++. -++...+.|+.|+.     +..||..+.
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence            7778887554      57888887754422  2221111222 222 35677888887763     666777654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.62  E-value=0.081  Score=51.98  Aligned_cols=288  Identities=12%  Similarity=0.122  Sum_probs=156.3

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-EEEec-CCCeEEEEEcCCCcEEEEEcCCC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWEC-KSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      +.|+.--.|+..++.-+-+..|+-..+|.-+. +........   ..+.. ..|+. .-...++++. .+.+++..++.-
T Consensus       629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~---kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i  703 (1096)
T KOG1897|consen  629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSL---KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEI  703 (1096)
T ss_pred             CCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccch---HHhhhhcccccccCCceEEEec-CCceEEEEecch
Confidence            45666666766544433344455555664332 221111111   11111 12221 1233455544 346777666543


Q ss_pred             ce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcc-eeeccceeEEEEECCCCceeEEeecCCCC--CcEEEE
Q 012699          225 RV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN-IYSWGFASLTVWNMKTWKAMTVLPLGEDP--PAITSL  299 (458)
Q Consensus       225 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--~~i~~~  299 (458)
                      +.  ++++..+   .....+++.+....+.+.+......... -....-..++++|.++.+.....++....  ..+.+.
T Consensus       704 qkl~irtvpl~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~  780 (1096)
T KOG1897|consen  704 QKLHIRTVPLG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISC  780 (1096)
T ss_pred             hhcceeeecCC---CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeee
Confidence            32  2333333   3567778877444444433221111100 00011147889999888877766654432  234455


Q ss_pred             EEccC-CCEEEEEec----------CCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          300 CFNHN-GKILAASAV----------DGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       300 ~~~~~-~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      .|..| +.++++|+.          .|.|.+|....+..+.....+  .+.+.++.. -+|+++|.-  ...|++|++.+
T Consensus       781 ~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~  857 (1096)
T KOG1897|consen  781 KFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTT  857 (1096)
T ss_pred             eecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccc
Confidence            58777 778888863          478888887764444433222  344444433 267777644  56899999987


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeE
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMF  443 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l  443 (458)
                      .+...         ....+..++..+...-.|..+++|.--+++.+...+..+......   -+....+++.+-.+.. +
T Consensus       858 ~~eLr---------~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-y  927 (1096)
T KOG1897|consen  858 ERELR---------IECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-Y  927 (1096)
T ss_pred             cceeh---------hhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-E
Confidence            64332         122355668889999999999999988888877766554222222   3556677777765444 4


Q ss_pred             EEecCCCcEEEE
Q 012699          444 LTGSADHSVQVM  455 (458)
Q Consensus       444 ~s~~~dg~v~iw  455 (458)
                      +.+..+|.+.+-
T Consensus       928 lgae~~gNlf~v  939 (1096)
T KOG1897|consen  928 LGAENSGNLFTV  939 (1096)
T ss_pred             EeecccccEEEE
Confidence            455566766654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.00036  Score=63.96  Aligned_cols=94  Identities=18%  Similarity=0.184  Sum_probs=71.1

Q ss_pred             CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce-eEEEEccCCCEEEEEeCCccEEEE
Q 012699          335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR-HEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      ...+.-+.|+|.-..+|.+..+|.+.+..+.  -+.+|..        ..++..+ .+++|.|||+.||+|-.||+|++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwti--------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTI--------PIPGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEec--------cCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            3457789999999999999999999988887  2223322        1123334 499999999999999999999999


Q ss_pred             EccCCCcccccC-CCCCcEEEEEECC
Q 012699          414 QVRGHASGMRTL-PHGAAITTVDWHP  438 (458)
Q Consensus       414 ~~~~~~~~~~~~-~h~~~v~~~~~~~  438 (458)
                      |++.+..+.... .....|.++-|+|
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            999887665432 3456777777863

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.57  E-value=0.036  Score=46.53  Aligned_cols=192  Identities=15%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             ceEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          193 EIMSLEWECKSDRLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      -...+.|. .++.++-+.+.-|  .|+.+|+.+++.......... ---..++...+.-+.+              .+.+
T Consensus        46 FTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qL--------------TWk~  109 (264)
T PF05096_consen   46 FTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQL--------------TWKE  109 (264)
T ss_dssp             EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEE--------------ESSS
T ss_pred             cCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEE--------------EecC
Confidence            35677775 5677788877766  799999999988766555432 1223344433322222              2333


Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcC
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGP  345 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~  345 (458)
                      +...+||..+.+.+..+...+.   -..++  .+++.|+.......++.+|..+.+...++....     ..++-+.|- 
T Consensus       110 ~~~f~yd~~tl~~~~~~~y~~E---GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  110 GTGFVYDPNTLKKIGTFPYPGE---GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             SEEEEEETTTTEEEEEEE-SSS-----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred             CeEEEEccccceEEEEEecCCc---ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence            6999999999999999987643   34455  456677776667789999988877766654322     245567774 


Q ss_pred             CCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc-------CCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          346 DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC-------DPESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       346 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      +|...|=.=....|...|..++....+.. ...+.       .......-.+.+|+.|..+.|.+.+..
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iD-ls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWID-LSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE--HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEE-hhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            66555555556677778877765443321 11111       111224567889999988877776653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=97.57  E-value=0.023  Score=54.71  Aligned_cols=224  Identities=8%  Similarity=0.025  Sum_probs=108.0

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC------CcEEEEEcCCCceeeeccCCCCCCceeeee
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD------GGIKAWNVDAKRVVCDLNTTDAFPSVLDLK  243 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  243 (458)
                      .+..||..+.+..... .......-.+++.  -++.+++.|+.+      ..+..||+.++.....-....  .......
T Consensus       273 ~v~~yd~~~~~W~~l~-~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVIS-TIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSL  347 (557)
T ss_pred             CEEEEeCCCCeEEECC-CCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeE
Confidence            4667787665432111 1111111122333  356777777754      347788988776432221111  1111222


Q ss_pred             ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--------
Q 012699          244 CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--------  315 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------  315 (458)
                      ..-++...+.|+.+...        ....+..||..+.+....-.+.........++  -+++..+.|+.++        
T Consensus       348 ~~~~g~IYviGG~~~~~--------~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~  417 (557)
T PHA02713        348 AVIDDTIYAIGGQNGTN--------VERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVH  417 (557)
T ss_pred             EEECCEEEEECCcCCCC--------CCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccc
Confidence            33456677777754211        01368999988755433222221111122222  2577777777542        


Q ss_pred             ---------------eEEEEeCCCCcee--eeeeCCCCCeEEEEEcCCCCEEEEecCCC------eEEEEeccC-CCeeE
Q 012699          316 ---------------MIHMFDMSAGLQI--TGWPAHDSAISSILFGPDETSIFSLGSDG------KIIEWSLQN-QGQVL  371 (458)
Q Consensus       316 ---------------~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~-~~~~~  371 (458)
                                     .+..||..+.+..  ..+.........++  -+++..+.|+.++      .+..||..+ .+   
T Consensus       418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---  492 (557)
T PHA02713        418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---  492 (557)
T ss_pred             ccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCC---
Confidence                           4778888765432  22211111111222  3566666776542      356788775 22   


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc--cEEEEEccCCC
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV--RAPIYQVRGHA  419 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--~i~i~~~~~~~  419 (458)
                      |.... .   ..........++  -+|+..++|+.++  .+..||..+.+
T Consensus       493 W~~~~-~---m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        493 WELIT-T---TESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eeEcc-c---cCcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence            21111 1   111111112222  2778888888777  67777776654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.04  Score=46.41  Aligned_cols=173  Identities=15%  Similarity=0.201  Sum_probs=108.7

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      +.|-+..|.++.|+|+.+.|++......-.||=...++.+.... ...-+....+.+. .++++.++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccCChhHeEEe-cCCEEEEEehhcceEEEEEEc
Confidence            44556669999999999999888877777777656666553322 2223445566776 778888887888899888877


Q ss_pred             CCceeeecc-------CCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCC-
Q 012699          223 AKRVVCDLN-------TTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGED-  292 (458)
Q Consensus       223 ~~~~~~~~~-------~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~-  292 (458)
                      .+.......       ...+ ...-..++|.|....++.+-+.+             -+.||...... .........+ 
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-------------P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-------------PIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-------------CcEEEEEecCCcccccccccCcc
Confidence            654322222       1111 24567899999998888877664             55555444222 1110000000 


Q ss_pred             ------CCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          293 ------PPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       293 ------~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                            -..+..+.|++ .+.+++.+.+++.+.-.|.. |.++..+
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence                  12467788887 46677777788888888865 4444443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0011  Score=64.79  Aligned_cols=92  Identities=18%  Similarity=0.366  Sum_probs=68.1

Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE---cCCC
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILF---GPDE  347 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~---~~~~  347 (458)
                      |.+...|+...-. +........++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+++-+   ..++
T Consensus       109 ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n  187 (1206)
T KOG2079|consen  109 GHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN  187 (1206)
T ss_pred             hhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC
Confidence            6787777765311 11222344578999999999999999999999999999999999988888777666554   3355


Q ss_pred             CEEEEecCCCeEEEEecc
Q 012699          348 TSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       348 ~~l~~~~~dg~i~iwd~~  365 (458)
                      ..++++..-|.  +|.+.
T Consensus       188 S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  188 SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cEEEEccCCCc--eEEEE
Confidence            56777777775  66654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.0022  Score=57.84  Aligned_cols=149  Identities=11%  Similarity=0.145  Sum_probs=98.8

Q ss_pred             EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--
Q 012699          206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--  283 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--  283 (458)
                      ++..+.....++-.|++.|+.+.....+..   |.-+.+.|+.+.--..+      ...+.+-.+..|.-||++-...  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~K~~Ql~~------e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD---INMVDITPDFKFAQLTS------EQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC---cceeeccCCcchhcccc------cccEEeecCCceEEecccccCcce
Confidence            444555667899999999999988887753   66667777654211111      1123344446899999874322  


Q ss_pred             eEEeec--CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          284 MTVLPL--GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       284 ~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      +...+.  ........|.+-..+| ++++|+.+|.|++||--..+....+++-..+|..+..+.+|++|+..+ +..+.+
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            111111  1112345666666565 899999999999999744444556788899999999999999887544 557777


Q ss_pred             Eecc
Q 012699          362 WSLQ  365 (458)
Q Consensus       362 wd~~  365 (458)
                      .++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            7764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.50  E-value=0.032  Score=47.68  Aligned_cols=146  Identities=14%  Similarity=0.103  Sum_probs=88.8

Q ss_pred             cEEEEEEccCCCEEEEEe---cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe-ccCCCee
Q 012699          295 AITSLCFNHNGKILAASA---VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS-LQNQGQV  370 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~  370 (458)
                      .+.+.+++++++.++...   ....++++...  ....... ....+..-.|++++...+....+...+++. ..+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            588999999999877655   33455665543  2222221 233788889999987776666666666664 2222111


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccCCCcc--ccc------C-CCCCcEEEEEECC
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRGHASG--MRT------L-PHGAAITTVDWHP  438 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~~~~~--~~~------~-~h~~~v~~~~~~~  438 (458)
                      .....      .......|..+.+||||..+|....   ++++++--+.....-  ..+      . .....+++++|.+
T Consensus       102 ~~~v~------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  102 PVEVD------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             eEEec------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            11000      0111117999999999999988773   467777765422111  111      1 2346899999999


Q ss_pred             CCCeEEEecCC
Q 012699          439 TLPMFLTGSAD  449 (458)
Q Consensus       439 ~~~~l~s~~~d  449 (458)
                      ++.+++.+...
T Consensus       176 ~~~L~V~~~~~  186 (253)
T PF10647_consen  176 DSTLVVLGRSA  186 (253)
T ss_pred             CCEEEEEeCCC
Confidence            99877765543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.47  E-value=0.017  Score=41.05  Aligned_cols=100  Identities=19%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             EEEEEEcc---C-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          296 ITSLCFNH---N-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       296 i~~~~~~~---~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      |+++++..   + .+.|++|+.|..|++|+-.  +.+..+.. .+.|.+++-... ..|+.+..+|+|-+|+-..   .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---ee
Confidence            55666654   2 2589999999999999854  56666654 456777777666 4788889999999987643   22


Q ss_pred             EeecCCcccCCCCCCCceeEEEEcc-C--C-CEEEEEeCCccEE
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDV-N--G-RRLLVTSGSVRAP  411 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~-~--g-~~l~~~~~~~~i~  411 (458)
                      |..+         .+..+.++++.. +  | .-|++|-.+|.|-
T Consensus        75 WRiK---------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIK---------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeec---------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2211         222244544433 3  3 3677888888764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.0002  Score=57.16  Aligned_cols=141  Identities=12%  Similarity=0.062  Sum_probs=86.0

Q ss_pred             EEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK  386 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  386 (458)
                      +..-+.+|.|.-++++..+.... -..|... ..  .-.-+..++.|+.+|.|.+|+....+....     .+..  ...
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-----~~~s--~~e  102 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSD-----RVCS--GEE  102 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-ee--ecccCceEEeecccceEEEecCCccchHHH-----hhhc--ccc
Confidence            33446678888887765332111 1112211 11  112345789999999999999873322110     1000  111


Q ss_pred             CceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEe--cCCCcEEEEeCC
Q 012699          387 SCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTG--SADHSVQVMSLS  458 (458)
Q Consensus       387 ~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~~dg~v~iw~l~  458 (458)
                      .....+.--.++.+..++..+|.|+.|++.-.+.+...-.|. .++..+..+..+++++.+  |.|..++.|++.
T Consensus       103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            112223333466688999999999999998776655555676 667777777777778877  888888888863

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0049  Score=55.68  Aligned_cols=136  Identities=20%  Similarity=0.191  Sum_probs=92.7

Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE-------EEEecCCCeEEEEeccCCCe-eEEeecCCc
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS-------IFSLGSDGKIIEWSLQNQGQ-VLWTRNCSR  378 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~  378 (458)
                      .|..+.....++-.|++.|+.+..+..+.. |+-+.+.|+.+.       =+.|-.|..|.-||.+-... .+.....+.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344555667799999999999999998777 777888885431       23455688899999985443 111111111


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      +    .......+.+-..+ -++++|+.+|.|++||--.......+.+-..+|..+..+.+|++|+..+.
T Consensus       427 y----~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  427 Y----STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             c----ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            1    11222344444444 47899999999999998655555566678899999999999997765553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.39  E-value=0.062  Score=45.12  Aligned_cols=192  Identities=14%  Similarity=0.118  Sum_probs=111.9

Q ss_pred             CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699          234 DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV  313 (458)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (458)
                      +...-...+.+..++.++.+.+..+.           ..|+.+|+.+++......++.. .--..++...+ +.....-.
T Consensus        42 d~~aFTQGL~~~~~g~LyESTG~yG~-----------S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d-~l~qLTWk  108 (264)
T PF05096_consen   42 DPTAFTQGLEFLDDGTLYESTGLYGQ-----------SSLRKVDLETGKVLQSVPLPPR-YFGEGITILGD-KLYQLTWK  108 (264)
T ss_dssp             -TT-EEEEEEEEETTEEEEEECSTTE-----------EEEEEEETTTSSEEEEEE-TTT---EEEEEEETT-EEEEEESS
T ss_pred             CCcccCccEEecCCCEEEEeCCCCCc-----------EEEEEEECCCCcEEEEEECCcc-ccceeEEEECC-EEEEEEec
Confidence            33345677888777888777776532           5999999999998888776543 23344555533 34444567


Q ss_pred             CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                      ++...+||..+.+.+.++.- .+.=+.++  .+++.|+.+.....+.++|..+.+........    .....-..++.+.
T Consensus       109 ~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~----~~g~pv~~LNELE  181 (264)
T PF05096_consen  109 EGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT----DNGRPVSNLNELE  181 (264)
T ss_dssp             SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E----ETTEE---EEEEE
T ss_pred             CCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE----ECCEECCCcEeEE
Confidence            89999999999888888764 34556777  45667777777778999998876554322111    0111122345555


Q ss_pred             EccCCCEEEEEeCCccEEEEEccCCCccccc---------------CCCCCcEEEEEECCCCC-eEEEe
Q 012699          394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRT---------------LPHGAAITTVDWHPTLP-MFLTG  446 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~-~l~s~  446 (458)
                      +- +|...|=.-....|...|..++.....+               .+-.+-.+.+||.|..+ +++||
T Consensus       182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            54 5555544444555666666655332111               01246789999998877 45554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.36  E-value=0.1  Score=46.73  Aligned_cols=253  Identities=13%  Similarity=0.128  Sum_probs=124.5

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc-----cccccCCCceEEEEEecC---CCeEEEEEcCC-------
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR-----NATIYCGTEIMSLEWECK---SDRLLLIGTAD-------  213 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d-------  213 (458)
                      .-+.|+|.|||+++++ ...|.|++++. .+.....     ............++++|.   ++.+.++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999987765 55999999983 3322111     111223456889999962   23333333321       


Q ss_pred             -CcEEEEEcCCC-------cee-eeccC-CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-
Q 012699          214 -GGIKAWNVDAK-------RVV-CDLNT-TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-  282 (458)
Q Consensus       214 -g~i~~wd~~~~-------~~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-  282 (458)
                       ..|.-|....+       +.+ ..+.. .........+.|.|++.+.++.+.........-.....|.|.-.+....- 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23444544433       111 11111 11123456799999998777766554311111111122455555543210 


Q ss_pred             -----------eeEEeecCCCCCcEEEEEEccC-CCEEEEE-ecCCeEEEEeCCCC------------------------
Q 012699          283 -----------AMTVLPLGEDPPAITSLCFNHN-GKILAAS-AVDGMIHMFDMSAG------------------------  325 (458)
Q Consensus       283 -----------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~v~d~~~~------------------------  325 (458)
                                 ....+. .++ .....++|+|. |.++++= +.++.=.|.-+..+                        
T Consensus       161 ~dnP~~~~~~~~~~i~A-~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYA-YGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             TTSTTTTSTTSTTTEEE-E---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCccccCCCceEEEEE-eCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                       011111 122 23568999998 6544432 11221222212111                        


Q ss_pred             -----ceeeeeeCCCCCeEEEEEcC-------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          326 -----LQITGWPAHDSAISSILFGP-------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       326 -----~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                           .++..+..| ..+..+.|.+       .+.+|++.-..+.|....+.............     ......+..++
T Consensus       239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~r~~~v~  312 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-----GGFGGRPRDVA  312 (331)
T ss_dssp             -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----TTSSS-EEEEE
T ss_pred             CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-----ccCCCCceEEE
Confidence                 122333333 4566677653       45566666667788888887554433222111     23344689999


Q ss_pred             EccCCCEEEEEeCCccEE
Q 012699          394 LDVNGRRLLVTSGSVRAP  411 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~~i~  411 (458)
                      +.|||.++++...+|.|+
T Consensus       313 ~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EETTSEEEEEE-TTTTEE
T ss_pred             EcCCCeEEEEECCCCeEe
Confidence            999999998888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.32  E-value=0.01  Score=42.15  Aligned_cols=100  Identities=10%  Similarity=0.045  Sum_probs=63.2

Q ss_pred             eEEEEEcC---CC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          338 ISSILFGP---DE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       338 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      |++|++..   +| +.|++|+.|..|++|+-...  ....          .....+..++-... ..++.+..+|+|-+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~Ei----------~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY   68 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAEI----------TETDKVTSLCSLGG-GRFAYALANGTVGVY   68 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEEE----------ecccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence            56676654   33 57999999999999986532  1111          23344677766666 568889999999888


Q ss_pred             EccCCCcccccCCCCCcEEEEEEC-CCC--C-eEEEecCCCcEE
Q 012699          414 QVRGHASGMRTLPHGAAITTVDWH-PTL--P-MFLTGSADHSVQ  453 (458)
Q Consensus       414 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~--~-~l~s~~~dg~v~  453 (458)
                      +-..  ...+.. .+..++++++. .++  . -|++|=.+|.|-
T Consensus        69 ~~~~--RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   69 DRSQ--RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eCcc--eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            7633  223333 22336666543 333  2 688888888774

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.29  E-value=0.069  Score=51.46  Aligned_cols=226  Identities=14%  Similarity=0.152  Sum_probs=116.8

Q ss_pred             CCCeEEEEEcCCC------cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE
Q 012699          202 KSDRLLLIGTADG------GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV  275 (458)
Q Consensus       202 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i  275 (458)
                      ..+.+++.|+.++      .+..||..++........... ..-.+++. -++...++|+.+.  +...+     ..+..
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~-~~~~lYv~GG~~~--~~~~l-----~~ve~  353 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAV-LNGKLYVVGGYDS--GSDRL-----SSVER  353 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEE-ECCEEEEEccccC--CCccc-----ceEEE
Confidence            3466777777763      678899888865544333322 12223333 3456777777762  11111     38899


Q ss_pred             EECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCC
Q 012699          276 WNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITG--WPAHDSAISSILFGPDET  348 (458)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~  348 (458)
                      ||....+....-.+...........  -+|...++|+.||     ++..||..+.+.-..  +.........+.  -+|.
T Consensus       354 YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~  429 (571)
T KOG4441|consen  354 YDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGK  429 (571)
T ss_pred             ecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCE
Confidence            9998877544333222221122122  2677888999886     478888876543222  211111222222  2677


Q ss_pred             EEEEecCCC------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----cEEEEEccC
Q 012699          349 SIFSLGSDG------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----RAPIYQVRG  417 (458)
Q Consensus       349 ~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~  417 (458)
                      ..++|+.++      .+..||..+..-   .... ...   .......  .-.-++.+.++|+.++     ++..||..+
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W---~~~~-~M~---~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTW---TLIA-PMN---TRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPET  500 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCce---eecC-Ccc---cccccce--EEEECCEEEEECCccCCCccceEEEEcCCC
Confidence            778887654      366777765421   1111 110   1111111  2334677778887765     367788776


Q ss_pred             CCccccc-CC-CCCcEEEEEECCCCCeEEEecCCCc
Q 012699          418 HASGMRT-LP-HGAAITTVDWHPTLPMFLTGSADHS  451 (458)
Q Consensus       418 ~~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~~~dg~  451 (458)
                      .+-...- .. ....+-...  -+++..+.|+.||.
T Consensus       501 ~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  501 NQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGN  534 (571)
T ss_pred             CceeEcccCccccccccEEE--ECCEEEEEecccCc
Confidence            5422111 11 112222222  24667788888864

>PHA02713 hypothetical protein; Provisional

Probab=97.11  E-value=0.038  Score=53.27  Aligned_cols=201  Identities=13%  Similarity=0.105  Sum_probs=100.2

Q ss_pred             CCCEEEEEeCC------CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----cEEEEEcCCCce
Q 012699          158 SGNNIASASVD------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-----GIKAWNVDAKRV  226 (458)
Q Consensus       158 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~  226 (458)
                      ++..++.||.+      ..+..||..+........ ......-.+++.  -++.+.+.|+.++     .+..||..+++.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-CcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            55666777653      346778876654321111 111111112222  3577778888764     478899988765


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC---cc---e----eeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS---SN---I----YSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~---~----~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      ...-.........  ....-++...+.|+.+.....   ..   +    .......+..||+.+.+....-.+.......
T Consensus       380 ~~~~~mp~~r~~~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~  457 (557)
T PHA02713        380 KMLPDMPIALSSY--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP  457 (557)
T ss_pred             EECCCCCcccccc--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence            4322222111111  112235677777765421100   00   0    0000247889998876544332221111111


Q ss_pred             EEEEEccCCCEEEEEecC------CeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCC--eEEEEecc
Q 012699          297 TSLCFNHNGKILAASAVD------GMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDG--KIIEWSLQ  365 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~d------g~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~  365 (458)
                       +++ .-+++..+.|+.+      ..+..||..+ .+.  +..++........+++  +++..++|+.|+  .+..||..
T Consensus       458 -~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        458 -GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             -cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence             122 2246666777654      2467899886 333  3333333333333333  677888998888  56667766


Q ss_pred             CC
Q 012699          366 NQ  367 (458)
Q Consensus       366 ~~  367 (458)
                      +.
T Consensus       534 ~~  535 (557)
T PHA02713        534 TY  535 (557)
T ss_pred             cc
Confidence            54

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.10  E-value=0.0018  Score=38.18  Aligned_cols=31  Identities=26%  Similarity=0.568  Sum_probs=28.3

Q ss_pred             CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          428 GAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       428 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ...|..++|+|...+||.+..||.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3579999999999999999999999999874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.03  Score=55.34  Aligned_cols=103  Identities=15%  Similarity=0.205  Sum_probs=73.1

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      ...++.|+..|.+...|+...-. ..........+|.+++|+.+|..++.|-.+             |.|.+||+.+++.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~-------------G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGD-------------GHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCC-------------CcEEEEEccCCcc
Confidence            45688888889998888765421 112222334789999999999999988877             6999999999999


Q ss_pred             eEEeecCCCCC-cEEEEEEccCCCEEEEEecCCeEEEEeC
Q 012699          284 MTVLPLGEDPP-AITSLCFNHNGKILAASAVDGMIHMFDM  322 (458)
Q Consensus       284 ~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~v~d~  322 (458)
                      .+.+...+++. .+..+.+..++..++++...|.  +|.+
T Consensus       165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            99887555432 2333444455667888777775  5554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.97  E-value=0.2  Score=42.87  Aligned_cols=154  Identities=12%  Similarity=0.083  Sum_probs=91.9

Q ss_pred             ceeeeeecCCCCeEEEee--cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699          238 SVLDLKCSPVEPIFVSAA--ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG  315 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  315 (458)
                      .+.+.++++++..++...  .+.            ..+.++...  ....... .+  ..+....|++++...++...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~------------~~L~~~~~~--~~~~~~~-~g--~~l~~PS~d~~g~~W~v~~~~~   87 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGG------------RSLYVGPAG--GPVRPVL-TG--GSLTRPSWDPDGWVWTVDDGSG   87 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCC------------CEEEEEcCC--Ccceeec-cC--CccccccccCCCCEEEEEcCCC
Confidence            578899999999887766  322            255555443  3222221 12  2578889999987777766666


Q ss_pred             eEEEEe-CCCCcee-eeeeCC--CCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699          316 MIHMFD-MSAGLQI-TGWPAH--DSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       316 ~i~v~d-~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      ..+++. ..++... ......  ...|..+.+||||..++...   .++.|.+=-+.....-..................
T Consensus        88 ~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~  167 (253)
T PF10647_consen   88 GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD  167 (253)
T ss_pred             ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence            666663 2333221 111211  22899999999999877655   3577777765532221000011111111233567


Q ss_pred             eeEEEEccCCCEEEEEeCCc
Q 012699          389 RHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~  408 (458)
                      +..++|.+++.+++.+...+
T Consensus       168 v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  168 VTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             ceeeeecCCCEEEEEeCCCC
Confidence            88999999999888776654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.19  Score=42.49  Aligned_cols=277  Identities=9%  Similarity=0.039  Sum_probs=149.3

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-  226 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-  226 (458)
                      +-+..+.++.+  +...+..+.-++|.|+.+.............+--.++..   .+++...+..|.-+.+.|+.+.+. 
T Consensus        87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence            44566677644  666677777899999988765433333333233344443   478888888677788888875432 


Q ss_pred             --eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          227 --VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       227 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                        ........  .....++.+.  +....+..+             +.+.+-|+........+........+.++..+++
T Consensus       162 ~lagrya~~~--~d~~~v~ISG--n~AYvA~~d-------------~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn  224 (370)
T COG5276         162 QLAGRYALPG--GDTHDVAISG--NYAYVAWRD-------------GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN  224 (370)
T ss_pred             eeeeeeccCC--CCceeEEEec--CeEEEEEeC-------------CCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence              11111111  1123344432  222233233             5888888876543333221122235788888877


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  382 (458)
                      ..+++..  +--+.+-|..+.+....+-  ....++.--.+.-.+++......+.-+.+-|+.+...+.....+..    
T Consensus       225 r~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t----  298 (370)
T COG5276         225 RAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDT----  298 (370)
T ss_pred             eeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccC----
Confidence            6666654  3347788877655333322  2222222212333566777777788888888887654432221111    


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                        ....-..+  ...+.++..+..+ ...+-+....+-.-...+...-+.+.+.+-+.+.+.+...++-+.||+.
T Consensus       299 --~g~~a~gi--~ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         299 --AGYQAAGI--RAYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             --CCccccce--EEecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence              11111122  2234455444444 3444454433322223333334455555556668888999999999985

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.96  E-value=0.29  Score=44.75  Aligned_cols=148  Identities=13%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEe---cCCCeEEEEEcCCCcEEEEEcCCCc--------
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWE---CKSDRLLLIGTADGGIKAWNVDAKR--------  225 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~--------  225 (458)
                      ...|+.|+..|.++||+........  .........+|..+..-   +......++.-.-..+.+|.+....        
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            4579999999999999985544221  22223345677777643   2223333333455678888773211        


Q ss_pred             -eeeeccCCCCCCceeeeeecCC-----CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          226 -VVCDLNTTDAFPSVLDLKCSPV-----EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       226 -~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                       .+..+..|.-......+++-|-     ...+...+.|             |.+.+|+-+.......+...-.   ...+
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~D-------------G~L~~feqe~~~f~~~lp~~ll---PgPl  180 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMD-------------GSLSFFEQESFAFSRFLPDFLL---PGPL  180 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecC-------------ceEEEEeCCcEEEEEEcCCCCC---CcCe
Confidence             0011111111112223333221     1234444444             7999999876444333332222   3447


Q ss_pred             EEccCCCEEEEEecCCeEEEEeC
Q 012699          300 CFNHNGKILAASAVDGMIHMFDM  322 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~  322 (458)
                      ++.+.-..|++++.+..+..|..
T Consensus       181 ~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  181 CYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             EEeecCCEEEEecCceeEEEecH
Confidence            78888888999998888988875

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.93  E-value=0.003  Score=50.70  Aligned_cols=143  Identities=13%  Similarity=0.174  Sum_probs=83.1

Q ss_pred             EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      .+..-+.+|.|+-++++..+........     +.+ .....-+..++.++.+             |.|.+|........
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-----~~e~~~v~~~~~~~~vG~~d-------------g~v~~~n~n~~g~~   93 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERF-----IDEGQRVVTASAKLMVGTSD-------------GAVYVFNWNLEGAH   93 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhh-----hhcceeecccCceEEeeccc-------------ceEEEecCCccchH
Confidence            3455567788887777654432211110     111 1112223344444444             79999887632211


Q ss_pred             EEeecCCCCCcEEE-EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-CCeEEEEEcCCCCEEEEe--cCCCeEE
Q 012699          285 TVLPLGEDPPAITS-LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-SAISSILFGPDETSIFSL--GSDGKII  360 (458)
Q Consensus       285 ~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~  360 (458)
                      ........ ..|.+ +.--.++.+..++..||.|+.|++.-.+.+.....|+ .++.....+..++.++.+  |.|..++
T Consensus        94 ~d~~~s~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k  172 (238)
T KOG2444|consen   94 SDRVCSGE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLK  172 (238)
T ss_pred             HHhhhccc-ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhh
Confidence            11111111 12222 2222345688899999999999998888877777777 566666666667777777  7788888


Q ss_pred             EEeccCC
Q 012699          361 EWSLQNQ  367 (458)
Q Consensus       361 iwd~~~~  367 (458)
                      .|++...
T Consensus       173 ~W~ve~~  179 (238)
T KOG2444|consen  173 KWNVEKI  179 (238)
T ss_pred             hcchhhh
Confidence            8888753

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.92  E-value=0.0046  Score=36.45  Aligned_cols=31  Identities=26%  Similarity=0.478  Sum_probs=28.5

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                      ...|.+++|+|...+||.+..+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999983

>PHA03098 kelch-like protein; Provisional

Probab=96.84  E-value=0.22  Score=48.21  Aligned_cols=194  Identities=12%  Similarity=0.110  Sum_probs=92.9

Q ss_pred             CCCEEEEEeCCC------cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCCce
Q 012699          158 SGNNIASASVDG------TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAKRV  226 (458)
Q Consensus       158 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~  226 (458)
                      ++..++.|+.++      .+..||..+.+............. .+++.  -++.+++.|+.+     ..+..||..+++.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-PGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-ceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            455666666542      466777766554321111111111 12222  357777888765     3577888887764


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK  306 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  306 (458)
                      ...-..+.  .........-++...+.|+.......       ...+..||+.+.+....-........ .+++ ..+++
T Consensus       371 ~~~~~lp~--~r~~~~~~~~~~~iYv~GG~~~~~~~-------~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~  439 (534)
T PHA03098        371 REEPPLIF--PRYNPCVVNVNNLIYVIGGISKNDEL-------LKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGK  439 (534)
T ss_pred             eeCCCcCc--CCccceEEEECCEEEEECCcCCCCcc-------cceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCE
Confidence            43222111  11111112235566666664321100       13788999887554332221111111 1222 23566


Q ss_pred             EEEEEecC--------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCC
Q 012699          307 ILAASAVD--------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQ  367 (458)
Q Consensus       307 ~l~~~~~d--------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  367 (458)
                      .++.|+.+        ..+.+||..+.+....  +.........+.+  +++.++.|+.+     +.+.+||..+.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            66666543        2388999877544321  1111111122222  56677777654     35777777654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.74  E-value=0.14  Score=46.65  Aligned_cols=148  Identities=9%  Similarity=0.062  Sum_probs=79.7

Q ss_pred             cEEEEEEccCCCEEEEEe-----------cCC-eEEEEeCCC--Cce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe
Q 012699          295 AITSLCFNHNGKILAASA-----------VDG-MIHMFDMSA--GLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGK  358 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~-----------~dg-~i~v~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  358 (458)
                      ....++|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+...-.....+++.+++ .++ ++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            357899999998776642           223 677776443  332  23333334456889999988 444 444433


Q ss_pred             EEEEeccCCCee----EEeecCCcccCC-CCCCCceeEEEEccCCCEEEEEeCC-------------------ccEEEEE
Q 012699          359 IIEWSLQNQGQV----LWTRNCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGS-------------------VRAPIYQ  414 (458)
Q Consensus       359 i~iwd~~~~~~~----~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~-------------------~~i~i~~  414 (458)
                      .++.|.......    .....  .+... .........++|.|||.+.++-+..                   +.+.-++
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~--~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLS--GFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEE--ccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            334354322111    00000  11111 1123457789999999876654421                   3355555


Q ss_pred             ccCCCcccccCCCCCcEEEEEECCCCCeEEEec
Q 012699          415 VRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       415 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                      ..+... ..+...-.....++|+|+|+++++-.
T Consensus       171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            544322 11111224467899999999877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=96.73  E-value=0.23  Score=48.10  Aligned_cols=193  Identities=11%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             CCeEEEEEcCCC------cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          203 SDRLLLIGTADG------GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       203 ~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      ++.+++.|+.++      .+..||..+++....-.....  ........-++..++.|+.+...        ....+..|
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~~~~lyv~GG~~~~~--------~~~~v~~y  363 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVFNNRIYVIGGIYNSI--------SLNTVESW  363 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEECCEEEEEeCCCCCE--------ecceEEEE
Confidence            566777776543      577888887776432222211  11111222356666666654210        11367889


Q ss_pred             ECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCC
Q 012699          277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDET  348 (458)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~  348 (458)
                      |..+.+....-.+... ..-.+++ .-+++..+.|+.+      ..+..||..+.+....  ++...... +++ ..+++
T Consensus       364 d~~~~~W~~~~~lp~~-r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~  439 (534)
T PHA03098        364 KPGESKWREEPPLIFP-RYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGK  439 (534)
T ss_pred             cCCCCceeeCCCcCcC-CccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCE
Confidence            9887654332222111 1111222 2356666777632      4688999876543221  11111111 222 23556


Q ss_pred             EEEEecCC--------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEc
Q 012699          349 SIFSLGSD--------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQV  415 (458)
Q Consensus       349 ~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~  415 (458)
                      .++.|+.+        ..+.+||..+.+-   .... ...   ........+.  .+++.++.|+.+     +.+.+||.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W---~~~~-~~~---~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKW---TELS-SLN---FPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCce---eeCC-CCC---cccccceEEE--ECCEEEEEcCCcCCcccceeEEEeC
Confidence            66666643        2377888775421   1111 110   0111111122  267777777654     46788887


Q ss_pred             cCC
Q 012699          416 RGH  418 (458)
Q Consensus       416 ~~~  418 (458)
                      .+.
T Consensus       511 ~~~  513 (534)
T PHA03098        511 KTN  513 (534)
T ss_pred             CCC
Confidence            654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.63  E-value=0.88  Score=45.52  Aligned_cols=210  Identities=9%  Similarity=0.100  Sum_probs=114.3

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCCC------ceEEEEEec---------------CCCeEEEEEcCCCcEE
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGT------EIMSLEWEC---------------KSDRLLLIGTADGGIK  217 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~---------------~~~~~l~~~~~dg~i~  217 (458)
                      +..|+.++.++.|.-.|..+++.+-+........      ....+++..               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            4466667777777777777766543221111000      012222221               1344788899999999


Q ss_pred             EEEcCCCceeeeccCCCCC------Cce----eeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          218 AWNVDAKRVVCDLNTTDAF------PSV----LDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~------~~v----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                      -.|.++|+.+..+......      ...    ..+.-.|  .+..++.++....   ........|.|+-+|.++++.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d---~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVAD---NYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccc---cccccCCCcEEEEEECCCCcEee
Confidence            9999999988765432110      000    0011111  1233444432110   00111124799999999999988


Q ss_pred             EeecCCC-------C---------CcEEEEEEccCCCEEEEEe------------------cCCeEEEEeCCCCceeeee
Q 012699          286 VLPLGED-------P---------PAITSLCFNHNGKILAASA------------------VDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       286 ~~~~~~~-------~---------~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~~~  331 (458)
                      .+.....       .         ..=..++++++..+++.+.                  ..+.|.-.|.++|+..-.+
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~  430 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF  430 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence            7753210       0         0012345555555555432                  1346777888888887776


Q ss_pred             eCCCCCeE---------EEEEcC-CCC---EEEEecCCCeEEEEeccCCCeeE
Q 012699          332 PAHDSAIS---------SILFGP-DET---SIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       332 ~~~~~~v~---------~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      +.....++         -+.+.. +|+   .++.++.+|.+.+.|.++++.+.
T Consensus       431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            64221111         122222 553   78899999999999999876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.62  E-value=0.9  Score=45.46  Aligned_cols=218  Identities=12%  Similarity=0.106  Sum_probs=110.5

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc------eeeeeecCCCCeEEEe---ecccCCCCcceeeccceeEE
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS------VLDLKCSPVEPIFVSA---AASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~i~  274 (458)
                      +..++.++.++.|.-.|..+|+.+..+........      ...+.+.....-....   ..-......++..+.++.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            44677778889999999999998887765432111      1222222110000000   00000112233444457999


Q ss_pred             EEECCCCceeEEeecCCC----------CCcEEEEEEcc--CCCEEEEEec----------CCeEEEEeCCCCceeeeee
Q 012699          275 VWNMKTWKAMTVLPLGED----------PPAITSLCFNH--NGKILAASAV----------DGMIHMFDMSAGLQITGWP  332 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~--~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~  332 (458)
                      -.|.++++....+...+.          ...-..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-.+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999999998876642211          00000111122  2346666643          6889999999999887764


Q ss_pred             CC---------CC--------Ce-EEEEEcCCCCEEEEecC------------------CCeEEEEeccCCCeeEEeecC
Q 012699          333 AH---------DS--------AI-SSILFGPDETSIFSLGS------------------DGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       333 ~~---------~~--------~v-~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      .-         .+        .+ ..+++.|+...++....                  .+.|.-.|.++++ ..|....
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk-~~W~~Q~  432 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK-ERWVFQT  432 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc-eEEEecc
Confidence            21         00        11 22344444444443221                  2345555555543 2332211


Q ss_pred             Cc--ccCCCCCCCceeEEEEcc-CCC---EEEEEeCCccEEEEEccCCCcccc
Q 012699          377 SR--FCDPESSKSCRHEMALDV-NGR---RLLVTSGSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       377 ~~--~~~~~~~~~~v~~~~~s~-~g~---~l~~~~~~~~i~i~~~~~~~~~~~  423 (458)
                      ..  .-.. .......-+.+.. +|+   .++.++.+|.++++|.++++.+..
T Consensus       433 ~~hD~WD~-D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       433 VHHDLWDM-DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cCCccccc-cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            00  0000 0111122222333 563   788899999999999998876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.59  E-value=0.2  Score=40.73  Aligned_cols=47  Identities=19%  Similarity=0.322  Sum_probs=41.3

Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP  345 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  345 (458)
                      +++..+|++.++.-..++|..+|..+|+.+..+.-....|++++|--
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            44566888888888899999999999999999998899999999953

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.43  E-value=0.56  Score=40.95  Aligned_cols=228  Identities=11%  Similarity=0.095  Sum_probs=102.0

Q ss_pred             CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC---CCceeeeeecCCCCeEEEeecccCCCCccee
Q 012699          190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA---FPSVLDLKCSPVEPIFVSAAASRRYGSSNIY  266 (458)
Q Consensus       190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (458)
                      ...++..+.|. ....-+++|. .+.| +-..+.|+.-........   ......+.+..+ ..++++ ..         
T Consensus        15 t~~~l~dV~F~-d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~---------   80 (302)
T PF14870_consen   15 TDKPLLDVAFV-DPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EP---------   80 (302)
T ss_dssp             -SS-EEEEEES-SSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ET---------
T ss_pred             CCCceEEEEEe-cCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CC---------
Confidence            45578899997 5555555554 4443 222233332222111111   123556666543 333433 22         


Q ss_pred             eccceeEEEEECCCCceeEEeecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEc
Q 012699          267 SWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFG  344 (458)
Q Consensus       267 ~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~  344 (458)
                           .+.+.-...++.-..+.+. .-+.....+....++..++ .+..|.|+.=. +.++ -......-.+.+..+.-+
T Consensus        81 -----g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~  153 (302)
T PF14870_consen   81 -----GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS  153 (302)
T ss_dssp             -----TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred             -----ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence                 3334444444444333221 1222333444434443333 34455444322 2232 223334455788899999


Q ss_pred             CCCCEEEEecCCCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCc--
Q 012699          345 PDETSIFSLGSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HAS--  420 (458)
Q Consensus       345 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~--  420 (458)
                      ++|+++++++.-....-||--.. -.+..          ......+..+.|+|++.+.+++ ..|.++.=+... ...  
T Consensus       154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~----------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHN----------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             TTS-EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             CCCcEEEEECcccEEEEecCCCccceEEc----------cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            99999988877666677775432 11111          1234568999999998887755 778888877221 111  


Q ss_pred             --ccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          421 --GMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       421 --~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                        ......-...+.+++|.+++...|+|+..
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence              11111233458999999998877776643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.38  E-value=0.49  Score=39.68  Aligned_cols=224  Identities=13%  Similarity=0.099  Sum_probs=135.4

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      .....++-. +++..-+++...+.|--.|..+|+....--...  .....+...|++...++-+..              
T Consensus        62 ~ap~dvapa-pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G--a~Phgiv~gpdg~~Witd~~~--------------  124 (353)
T COG4257          62 SAPFDVAPA-PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG--ASPHGIVVGPDGSAWITDTGL--------------  124 (353)
T ss_pred             CCccccccC-CCCceEEecCccccceecCCCCCceEEEecCCC--CCCceEEECCCCCeeEecCcc--------------
Confidence            334555655 677788888888888888999888654332222  456678888888877765543              


Q ss_pred             eEEEEECCCCceeE-EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCE
Q 012699          272 SLTVWNMKTWKAMT-VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETS  349 (458)
Q Consensus       272 ~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  349 (458)
                      .|.-.|.++.+... .+..+..........|.+.|++-+++.. |.---.|.. ...+..+... ...-..|+..|+|..
T Consensus       125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv  202 (353)
T COG4257         125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV  202 (353)
T ss_pred             eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE
Confidence            56666666544322 2222333456788999999998888753 211111211 1223333322 234567888999988


Q ss_pred             EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-ccccCCCC
Q 012699          350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-GMRTLPHG  428 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-~~~~~~h~  428 (458)
                      -++.-.++.|...|-.....       ..+..+.........+--+|.|+.-++....+.++-+|.....- ...+.+-+
T Consensus       203 wyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~  275 (353)
T COG4257         203 WYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSK  275 (353)
T ss_pred             EEEeccccceEEcccccCCc-------ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCC
Confidence            87777777787777765421       12233333344455566788898888888888888888765431 12222333


Q ss_pred             CcEEEEEECCCCC
Q 012699          429 AAITTVDWHPTLP  441 (458)
Q Consensus       429 ~~v~~~~~~~~~~  441 (458)
                      ....++.....++
T Consensus       276 arpys~rVD~~gr  288 (353)
T COG4257         276 ARPYSMRVDRHGR  288 (353)
T ss_pred             CCcceeeeccCCc
Confidence            4444555544444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.29  E-value=0.12  Score=50.09  Aligned_cols=152  Identities=13%  Similarity=0.134  Sum_probs=92.8

Q ss_pred             CCEEEEEecCCeEEEEeCCCCcee------eeee----------------CCCCCeEEEEEcC--CCCEEEEecCCCeEE
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQI------TGWP----------------AHDSAISSILFGP--DETSIFSLGSDGKII  360 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~------~~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  360 (458)
                      ..+++++. .+.|.||+.......      ..+.                .....|+.|....  +...|+.+.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56777755 778999997542211      1110                0112345554433  456889999999999


Q ss_pred             EEeccCCCe----e---E---EeecCCcccCCCCCCCceeEEEEc--cCCCEEEEEeCCccEEEEEccCCC-c--ccccC
Q 012699          361 EWSLQNQGQ----V---L---WTRNCSRFCDPESSKSCRHEMALD--VNGRRLLVTSGSVRAPIYQVRGHA-S--GMRTL  425 (458)
Q Consensus       361 iwd~~~~~~----~---~---~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~~~~i~i~~~~~~~-~--~~~~~  425 (458)
                      +|.++.--.    .   .   .........-........+.++++  ...++||+++....|.||-..... .  .....
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            998742100    0   0   000000001112234578889998  888999999988888888765421 1  11122


Q ss_pred             CCCCcEEEEEECCCC-----C-eEEEecCCCcEEEEeC
Q 012699          426 PHGAAITTVDWHPTL-----P-MFLTGSADHSVQVMSL  457 (458)
Q Consensus       426 ~h~~~v~~~~~~~~~-----~-~l~s~~~dg~v~iw~l  457 (458)
                      .|...|.+|+|-++.     . .|++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            466789999997654     2 7888999999999886

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02790 Kelch-like protein; Provisional

Probab=96.22  E-value=0.92  Score=43.13  Aligned_cols=145  Identities=9%  Similarity=-0.028  Sum_probs=72.1

Q ss_pred             CCeEEEEEcCCC-----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          203 SDRLLLIGTADG-----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       203 ~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      ++.++++|+.++     .+..||..+++....-....  .........-++...+.|+.+..           ..+..||
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~~-----------~sve~yd  337 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPNP-----------TSVERWF  337 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCCC-----------CceEEEE
Confidence            456677777543     46778888776543322221  11111122345666677765321           2678888


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC---eEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEE
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG---MIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFS  352 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~  352 (458)
                      ..+++....-.+..........  .-+|+..+.|+.++   .+..||.++.+....  +.........++  -+++..+.
T Consensus       338 p~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~  413 (480)
T PHA02790        338 HGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLV  413 (480)
T ss_pred             CCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEE
Confidence            8765443322222111111222  23576777777553   477888876543321  111111111222  35555555


Q ss_pred             ecCCCeEEEEeccCC
Q 012699          353 LGSDGKIIEWSLQNQ  367 (458)
Q Consensus       353 ~~~dg~i~iwd~~~~  367 (458)
                      |+   .+.+||..+.
T Consensus       414 GG---~~e~ydp~~~  425 (480)
T PHA02790        414 GR---NAEFYCESSN  425 (480)
T ss_pred             CC---ceEEecCCCC
Confidence            53   4677887653

>PHA02790 Kelch-like protein; Provisional

Probab=96.20  E-value=0.79  Score=43.59  Aligned_cols=188  Identities=9%  Similarity=-0.095  Sum_probs=90.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC--CcEEEEEcCCCceeeec
Q 012699          158 SGNNIASASVDG-----TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD--GGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       158 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~  230 (458)
                      ++..++.|+.++     ++..||..+............... .+++.  -++.+.+.|+.+  ..+..||..+++....-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            345567776543     466777766543211111111111 12222  357777777754  35788888766543322


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (458)
                      ....  .........-++...+.|+.+..          ...+..||.++.+-...-........ .+++ .-+++..+.
T Consensus       348 ~l~~--~r~~~~~~~~~g~IYviGG~~~~----------~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~  413 (480)
T PHA02790        348 SLLK--PRCNPAVASINNVIYVIGGHSET----------DTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLV  413 (480)
T ss_pred             CCCC--CCcccEEEEECCEEEEecCcCCC----------CccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEE
Confidence            2221  11112223345667777765421          12677899877554432222111111 1222 235655566


Q ss_pred             EecCCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCC
Q 012699          311 SAVDGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQ  367 (458)
Q Consensus       311 ~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~  367 (458)
                      |   |.+.+||.++.+...  .++........+.  -+++..+.|+.+     ..+..||..+.
T Consensus       414 G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        414 G---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             C---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            5   457889987654432  2221122222222  356677777754     24556666543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.18  E-value=1.1  Score=41.93  Aligned_cols=117  Identities=15%  Similarity=0.124  Sum_probs=68.4

Q ss_pred             CCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCC----ccccccC--CC--ceEEEEEecCCCeEEEEEcCCCc
Q 012699          148 SPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPAS----RNATIYC--GT--EIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       148 ~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~--~~--~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      ..|..+.|.|-    ...|+...-...|.||.+.-.....    ...+...  .-  -...+.|+ |....|+.-.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCce
Confidence            45889999984    3345556667899999875221100    0011111  11  13456799 44555555544444


Q ss_pred             EEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          216 IKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       216 i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      -.++++....  ....++..   +.|.+.+|.+||+.++.+-...            =.-++||-..
T Consensus       136 SV~~sV~~d~srVkaDi~~~---G~IhCACWT~DG~RLVVAvGSs------------LHSyiWd~~q  187 (671)
T PF15390_consen  136 SVLPSVHCDSSRVKADIKTS---GLIHCACWTKDGQRLVVAVGSS------------LHSYIWDSAQ  187 (671)
T ss_pred             eEeeeeeeCCceEEEeccCC---ceEEEEEecCcCCEEEEEeCCe------------EEEEEecCch
Confidence            4455655433  33333333   6799999999999888776553            1667888654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.16  E-value=0.2  Score=48.05  Aligned_cols=124  Identities=15%  Similarity=0.091  Sum_probs=78.0

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIK  217 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~  217 (458)
                      ...++..-.....-+.-+.-++.-+.-+...++.|||...+..... ........|.++.|.. ++++.+++.+....|.
T Consensus        21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~   99 (631)
T PF12234_consen   21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL   99 (631)
T ss_pred             EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eeecCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence            3334444444455555555554444444455799999988764432 2335578899999964 6778888888889999


Q ss_pred             EEEcCC---------CceeeeccCCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699          218 AWNVDA---------KRVVCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       218 ~wd~~~---------~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      +|.-..         -..+..+..... ..+|.+..|.++|..++.++.               .+.++|-
T Consensus       100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---------------qlfv~dk  155 (631)
T PF12234_consen  100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN---------------QLFVFDK  155 (631)
T ss_pred             EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC---------------EEEEECC
Confidence            985421         112233322221 146888999999988776663               7888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.14  E-value=0.3  Score=45.52  Aligned_cols=151  Identities=12%  Similarity=0.196  Sum_probs=89.4

Q ss_pred             cEEEEEEccCCCEEE-EEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC----CCEEEEecCCCeEEEEeccCC
Q 012699          295 AITSLCFNHNGKILA-ASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD----ETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~-~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      ++..++|. ||+.++ +.-  .+|.+++=|   .+.+..    -..|..+.|.|-    ...|.+......|.+|.+...
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            47788886 555444 321  233333322   222333    345899999983    345666778889999998632


Q ss_pred             C----eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc-ccCCCCCcEEEEEECCCCCe
Q 012699          368 G----QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM-RTLPHGAAITTVDWHPTLPM  442 (458)
Q Consensus       368 ~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~  442 (458)
                      .    +......|..   .+...--...+.|+|....|++-.....-.++++....... .-....+.|-|.+|.+||+.
T Consensus        93 ~~e~~K~l~sQtcEi---~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   93 TTERNKLLMSQTCEI---REPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             ccccccceeeeeeec---cCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence            1    1111111111   11222234568899999999988777655666665443222 22356688999999999997


Q ss_pred             EEEe-cCCCcEEEEe
Q 012699          443 FLTG-SADHSVQVMS  456 (458)
Q Consensus       443 l~s~-~~dg~v~iw~  456 (458)
                      |+.+ |..=.-+|||
T Consensus       170 LVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWD  184 (671)
T ss_pred             EEEEeCCeEEEEEec
Confidence            6654 3333466776

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.10  E-value=1.1  Score=41.10  Aligned_cols=184  Identities=11%  Similarity=0.070  Sum_probs=95.0

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-------------
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-------------  226 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------------  226 (458)
                      .+|..=+.||.+.+++-+.-...........+++   +.|. +..+.+++++.+..+.-|....-..             
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~-~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~  221 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYC-PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQ  221 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEe-ecCCEEEEecCceeEEEecHHHhhhccccccccccccc
Confidence            5677779999999998665432211122223344   4555 5566788888888888886421100             


Q ss_pred             ----------eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          227 ----------VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       227 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                                ..++...+..-.+..+.++.....++.-+..              .+.+.+.. |......+++..+  .
T Consensus       222 ~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger--------------~Lf~l~~~-G~l~~~krLd~~p--~  284 (418)
T PF14727_consen  222 DISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER--------------SLFCLKDN-GSLRFQKRLDYNP--S  284 (418)
T ss_pred             cccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc--------------eEEEEcCC-CeEEEEEecCCce--e
Confidence                      0111111111112222333233333333332              55555553 4444444443322  1


Q ss_pred             EEEEEcc----CC---CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE---cCCCCEEEEecCCCeEEEEeccC
Q 012699          297 TSLCFNH----NG---KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILF---GPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       297 ~~~~~~~----~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      ....|..    ++   ..+++++.++++.||.=.  +.+..-+....+| ++..   ..-...|++-+.+|.+.+--+.+
T Consensus       285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             eEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            1111211    22   248888999999999743  3333333223333 3333   22334888899999999988876


Q ss_pred             C
Q 012699          367 Q  367 (458)
Q Consensus       367 ~  367 (458)
                      .
T Consensus       362 d  362 (418)
T PF14727_consen  362 D  362 (418)
T ss_pred             C
Confidence            4

>PRK13684 Ycf48-like protein; Provisional

Probab=95.97  E-value=1.1  Score=40.13  Aligned_cols=152  Identities=13%  Similarity=0.065  Sum_probs=84.1

Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEE-eCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMF-DMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~-d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ...+..+.+.|++.+++++ ..|.+..- | ..++ .......-...++++.+.|+++.++.+ ..|.+++=....+ ..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G-~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL-ES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC-Cc
Confidence            4568899999998777665 45655432 2 1222 112222335678999999998876654 4566543222221 11


Q ss_pred             EEeecCCcccCC-CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEe
Q 012699          371 LWTRNCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       371 ~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~  446 (458)
                       |..    ...+ ......+..+.+.|+++.++++ .+|.+. ...+.++.-....   .-....+.+.|..+++.++ .
T Consensus       248 -W~~----~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~  319 (334)
T PRK13684        248 -WSK----PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L  319 (334)
T ss_pred             -ccc----ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence             110    0011 1122457788999988766544 556444 3444433222221   2224578888887776655 5


Q ss_pred             cCCCcEEEEe
Q 012699          447 SADHSVQVMS  456 (458)
Q Consensus       447 ~~dg~v~iw~  456 (458)
                      +..|.|.-|+
T Consensus       320 G~~G~il~~~  329 (334)
T PRK13684        320 GQRGVLLRYV  329 (334)
T ss_pred             CCCceEEEec
Confidence            5688887765

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.90  E-value=0.91  Score=42.13  Aligned_cols=53  Identities=15%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeee-----CCCCCeEEEEEcCCC
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWP-----AHDSAISSILFGPDE  347 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~-----~~~~~v~~~~~~~~~  347 (458)
                      ....|+|.|+|++|++--..|.|++++..++..  +..+.     ...+....|+++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            468899999998776654469999998654432  22111     135678899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.88  E-value=0.3  Score=48.21  Aligned_cols=72  Identities=18%  Similarity=0.301  Sum_probs=51.6

Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCC----------Cc--cccc---------CCCCCcEEEEEECCCC---C
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH----------AS--GMRT---------LPHGAAITTVDWHPTL---P  441 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~----------~~--~~~~---------~~h~~~v~~~~~~~~~---~  441 (458)
                      ...|..+.++|+|++|+..+..| |.|..+...          +.  ..+.         ..+...|..+.|+|.+   .
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34689999999999999988866 444444321          11  0010         0345689999999985   5


Q ss_pred             eEEEecCCCcEEEEeCC
Q 012699          442 MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       442 ~l~s~~~dg~v~iw~l~  458 (458)
                      .|+.-..|+++|+||+.
T Consensus       163 ~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             eEEEEecCCEEEEEecC
Confidence            88888899999999974

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.82  E-value=1.1  Score=38.56  Aligned_cols=206  Identities=14%  Similarity=0.115  Sum_probs=112.0

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCC----CCCCcccccc------CCCceEEEEEecCC-----------CeEEE
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSS----TPASRNATIY------CGTEIMSLEWECKS-----------DRLLL  208 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~------~~~~v~~~~~~~~~-----------~~~l~  208 (458)
                      -+.|+++|.+.+-++....+...+||....    ........+.      .....+.+.|+...           ...++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            467999999988787777889999998611    1111111111      12356677776211           13467


Q ss_pred             EEcCCCcEEEEEcCCCce---e--eeccCCCCCCcee-eeeec--CCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          209 IGTADGGIKAWNVDAKRV---V--CDLNTTDAFPSVL-DLKCS--PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       209 ~~~~dg~i~~wd~~~~~~---~--~~~~~~~~~~~v~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      .+++||+|.-|...-+..   .  ..+.... ...++ .+++.  ..+..|..+...            .++|.+||-.=
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavYkGLAi~~~~~~~~LYaadF~------------~g~IDVFd~~f  171 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVYKGLAVGPTGGGDYLYAANFR------------QGRIDVFKGSF  171 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCC-CcceeeeeEEeecCCCceEEEeccC------------CCceEEecCcc
Confidence            889999999998543322   1  1111111 12232 23333  234455444433            26999998543


Q ss_pred             CceeE--Eee---cCCC--CCcE---------EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEE
Q 012699          281 WKAMT--VLP---LGED--PPAI---------TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSIL  342 (458)
Q Consensus       281 ~~~~~--~~~---~~~~--~~~i---------~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~  342 (458)
                      .+...  .+.   +...  +-.|         +-..-.++.+.=+.|..-|.|-+||+. +..++++.  +.-..-+.|+
T Consensus       172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a  250 (336)
T TIGR03118       172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLA  250 (336)
T ss_pred             ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceee
Confidence            22110  010   0000  0011         111112222222233345789999976 77777763  3334567788


Q ss_pred             EcC------CCCEEEEecCCCeEEEEeccCCCe
Q 012699          343 FGP------DETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       343 ~~~------~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      ..|      .+.+|+---.||+|..||..++..
T Consensus       251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             eChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence            766      567777767799999999887643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=0.084  Score=52.72  Aligned_cols=142  Identities=11%  Similarity=0.051  Sum_probs=89.9

Q ss_pred             cEEEEEEccCCCEEEEEec--CCeEEEEeCCCCceee-----eee------CCCCCeEEEEEcCCCC-EEEEecCCCeEE
Q 012699          295 AITSLCFNHNGKILAASAV--DGMIHMFDMSAGLQIT-----GWP------AHDSAISSILFGPDET-SIFSLGSDGKII  360 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  360 (458)
                      ++..+...+|+...++...  +-.|+.||+++-..-.     -+.      ....-..++.|+|.-. ..+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            3556666777665554433  3478999987532111     111      1123455778888543 456677799998


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc--cccC-CCCCcEEEEEEC
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG--MRTL-PHGAAITTVDWH  437 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~h~~~v~~~~~~  437 (458)
                      +..+........         ........++++|+|.|+.+++|-.+|++.-|........  .... .....|.+++|-
T Consensus       182 V~~~~~~~~~v~---------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  182 VKSTKQLAQNVT---------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhhhhhhhhc---------ccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEe
Confidence            888764332211         1234556899999999999999999999988876544211  1111 124789999998


Q ss_pred             CCCCeEEE
Q 012699          438 PTLPMFLT  445 (458)
Q Consensus       438 ~~~~~l~s  445 (458)
                      ..-.+|++
T Consensus       253 ~t~eflvv  260 (1405)
T KOG3630|consen  253 STQEFLVV  260 (1405)
T ss_pred             cceeEEEE
Confidence            77776664

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.79  E-value=1.3  Score=39.54  Aligned_cols=162  Identities=14%  Similarity=0.150  Sum_probs=91.9

Q ss_pred             CcEEEEEEccCCCEEEEEecCCe------EEEEeCCC--C--cee-----eeeeCCCC--------CeEEEEEcCCCCEE
Q 012699          294 PAITSLCFNHNGKILAASAVDGM------IHMFDMSA--G--LQI-----TGWPAHDS--------AISSILFGPDETSI  350 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~------i~v~d~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~~~l  350 (458)
                      +.+..+.+.|++..+++.+.+|.      ++.+++..  +  ..+     ..+....+        ..-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45788899866556666677777      66666543  1  111     11111111        33478887788877


Q ss_pred             EEecCC------CeEEEEeccCCCeeEEeecCCccc-------CCCCCCCceeEEEEccCCCEEEEEeCCc-------c-
Q 012699          351 FSLGSD------GKIIEWSLQNQGQVLWTRNCSRFC-------DPESSKSCRHEMALDVNGRRLLVTSGSV-------R-  409 (458)
Q Consensus       351 ~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~-------~-  409 (458)
                      ++.-.+      ..|+.++.. + ........+...       .....+...-+++++|+|+.|+++.+..       . 
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            776666      778777765 2 222211111111       2234566788999999999777665422       1 


Q ss_pred             ------EEEEEccCC--C-ccccc----CC-----CCCcEEEEEECCCCCeEEEe-----cCCCcEEEEeC
Q 012699          410 ------APIYQVRGH--A-SGMRT----LP-----HGAAITTVDWHPTLPMFLTG-----SADHSVQVMSL  457 (458)
Q Consensus       410 ------i~i~~~~~~--~-~~~~~----~~-----h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~l  457 (458)
                            ++++.....  . ....+    ..     ....|+.+.+-+++++|+-=     +....++|+.+
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                  455544422  1 11111    11     45689999999999977641     13445666543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.77  E-value=0.0015  Score=58.39  Aligned_cols=148  Identities=14%  Similarity=0.233  Sum_probs=99.9

Q ss_pred             eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      .....|.|.+.+ ++.++.+..+..||-.. +........   ....+++|..++..++......            +.+
T Consensus        37 pi~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n~t---g~aldm~wDkegdvlavlAek~------------~pi   99 (615)
T KOG2247|consen   37 PIIHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELNPT---GKALDMAWDKEGDVLAVLAEKT------------GPI   99 (615)
T ss_pred             cceeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccCCc---hhHhhhhhccccchhhhhhhcC------------CCe
Confidence            345567755555 77778888888888543 333222222   4567788888887666554443            599


Q ss_pred             EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      .+||+.+..... +...+. ..-.-+.|++....++.|...|.+.+|+..+.+.+...-.|...++++++.+.+ +.+.+
T Consensus       100 ylwd~n~eytqq-LE~gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~  176 (615)
T KOG2247|consen  100 YLWDVNSEYTQQ-LESGGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILC  176 (615)
T ss_pred             eechhhhhhHHH-HhccCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeec
Confidence            999998643322 222221 112227899999999999999999999988877666655689999999999877 55556


Q ss_pred             cCCCeEEE
Q 012699          354 GSDGKIIE  361 (458)
Q Consensus       354 ~~dg~i~i  361 (458)
                      +.|..+.+
T Consensus       177 dcd~~L~v  184 (615)
T KOG2247|consen  177 DCDNTLSV  184 (615)
T ss_pred             CcHHHHHH
Confidence            66654433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.77  E-value=1  Score=43.45  Aligned_cols=181  Identities=12%  Similarity=0.173  Sum_probs=91.0

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee-ccCCCCCCceeeeeecC
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSP  246 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~  246 (458)
                      --.|+|++..+.. ...  ..-.+.++..+.|+  +...|++...+|++++|++-....... .........|..+.+..
T Consensus        63 ~~~I~If~~sG~l-L~~--~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~  137 (829)
T KOG2280|consen   63 RPYIRIFNISGQL-LGR--ILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH  137 (829)
T ss_pred             ceeEEEEeccccc-hHH--HHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec
Confidence            3568888875443 322  22233488899997  455677788999999999864432221 11111113455666666


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC---EEEEEe-cCC-eEEEEe
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK---ILAASA-VDG-MIHMFD  321 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~-~dg-~i~v~d  321 (458)
                      +|-.+.+.+..              .+.+-+.........-..+...-+-.|-...+++.   .++--. ..+ .+..-+
T Consensus       138 ~GVavlt~~g~--------------v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~  203 (829)
T KOG2280|consen  138 NGVAVLTVSGQ--------------VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE  203 (829)
T ss_pred             CceEEEecCCc--------------EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence            66666655543              33333333211111101011111112222222221   111110 011 111111


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      ....+ ...+....+.+..+..||+.++|+--..+|.|.+-++...+
T Consensus       204 ~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  204 ESRVQ-LHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             ccccc-ccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence            11122 22222224568889999999999999999999988877543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.72  E-value=1.6  Score=39.99  Aligned_cols=91  Identities=16%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEE---EecCCCC---CCCc---cccccCC--CceEEEEEec----------CCCeEEEEE
Q 012699          152 CCRFSSSGNNIASASVDGTVRI---WTYDSST---PASR---NATIYCG--TEIMSLEWEC----------KSDRLLLIG  210 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~~dg~v~i---wd~~~~~---~~~~---~~~~~~~--~~v~~~~~~~----------~~~~~l~~~  210 (458)
                      .++.+|+++.|+.+..+..+.+   |+.....   ....   ......+  ..|+++.|-|          ++...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4677889999888877766555   5432111   1100   0111111  4677777654          245789999


Q ss_pred             cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       211 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      ..+|.|++|.. +|..+..-..+.  .+|..+.+.
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~--~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHE--EPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCc--cceEEEEec
Confidence            99999999986 455443333332  456665554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.67  E-value=0.42  Score=45.97  Aligned_cols=118  Identities=11%  Similarity=0.145  Sum_probs=73.1

Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEc--CCCCEEEEecCCCeEEEEeccCC----
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFG--PDETSIFSLGSDGKIIEWSLQNQ----  367 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~----  367 (458)
                      .+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|.  |++..+++.+....|.+|--...    
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34455555556555555555689999998876544322 347789999985  58889999999999999864311    


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ..+.+. .............+|....|.++|.+++.+  ++.++|++-
T Consensus       111 ~~p~w~-~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWA-PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             CCcccc-eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            111111 000111111233568889999999877644  345777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.52  E-value=0.35  Score=44.22  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=89.0

Q ss_pred             CCCeEEE-EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          202 KSDRLLL-IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       202 ~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      .+..+++ .|.....++-.|++.|+.+.....+..   + -+.+.|..+.--..      ....+.+.++..|.-.|.+-
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd---v-vVqy~p~~kf~qmt------~eqtlvGlS~~svFrIDPR~  546 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD---V-VVQYNPYFKFQQMT------DEQTLVGLSDYSVFRIDPRA  546 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCc---c-eeecCCchhHHhcC------ccceEEeecccceEEecccc
Confidence            4444444 455566788889999999888877753   2 45566653311000      00011111123555556553


Q ss_pred             Cc-eeEEeecCC--CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC
Q 012699          281 WK-AMTVLPLGE--DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG  357 (458)
Q Consensus       281 ~~-~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  357 (458)
                      .. .+.......  ......+..-. ...++++|+..|.|++||.-..+....+++-...|..+..+.+|+++++.+. .
T Consensus       547 ~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~  624 (776)
T COG5167         547 RGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N  624 (776)
T ss_pred             cCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence            22 222221111  11222333322 3459999999999999996554555566777889999999999998776554 4


Q ss_pred             eEEEEecc
Q 012699          358 KIIEWSLQ  365 (458)
Q Consensus       358 ~i~iwd~~  365 (458)
                      .+.+-|++
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            67777775

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.61  Score=37.37  Aligned_cols=172  Identities=15%  Similarity=0.203  Sum_probs=92.3

Q ss_pred             CCCEEEEEeC--CCcEEEEecCCCCCCCcccccc---CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699          158 SGNNIASASV--DGTVRIWTYDSSTPASRNATIY---CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       158 ~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  232 (458)
                      +|.++.+.+.  ...|++||+.+++.+.......   .+..++.+     .+......-.+|.-..+|.++-+.+..+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccccc
Confidence            4566666654  3469999999877543222110   11122211     122233344578888899988877766654


Q ss_pred             CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc---EEEEEEccCCCEEE
Q 012699          233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA---ITSLCFNHNGKILA  309 (458)
Q Consensus       233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~  309 (458)
                      ..   .-+.++.  ++..++.+...             .+++.-|.++......+.......+   ++.+.|- +|...|
T Consensus       130 ~G---eGWgLt~--d~~~LimsdGs-------------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyA  190 (262)
T COG3823         130 EG---EGWGLTS--DDKNLIMSDGS-------------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYA  190 (262)
T ss_pred             CC---cceeeec--CCcceEeeCCc-------------eEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEE
Confidence            42   3344433  33334443333             3888888877655554433222222   3334443 454444


Q ss_pred             EEecCCeEEEEeCCCCceeeeee------------CCCCCeEEEEEcCCCC-EEEEe
Q 012699          310 ASAVDGMIHMFDMSAGLQITGWP------------AHDSAISSILFGPDET-SIFSL  353 (458)
Q Consensus       310 ~~~~dg~i~v~d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~-~l~~~  353 (458)
                      -.-.+..|...|..+|+.+..+.            .|.+..+.+++.|++. ++++|
T Consensus       191 NVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         191 NVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44444456666666666554432            3455678899999774 45544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.15  E-value=3.2  Score=40.28  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=46.8

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      ...++++.-+|.++.++.+..||.|++|++.......   ......+-..+.|. ..+  |++.+.|..+.-|.-
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk---i~~~~~p~~nlv~t-nhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK---ICEEAKPKENLVFT-NHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh---hhhhcCCccceeee-ccc--eEEEeccchhheeec
Confidence            3457778888999999999999999999986654321   11222334455665 333  677777777777753

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=2  Score=36.64  Aligned_cols=234  Identities=10%  Similarity=0.045  Sum_probs=123.6

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      -.++..  .|++...+..|.-+.+.|+.+.+........ ........++.+   +++.+.+..|+-+.+-|+.......
T Consensus       131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPv  205 (370)
T COG5276         131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPV  205 (370)
T ss_pred             EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCe
Confidence            344444  4678877776666778888765543211111 122233556655   7778888899999999987654322


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                      .+........+.++..+++..+++....               .+.+-|..+.+....+...+...++.--.+.-.+++.
T Consensus       206 li~~~n~g~g~~sv~vsdnr~y~vvy~e---------------gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~  270 (370)
T COG5276         206 LIGSYNTGPGTYSVSVSDNRAYLVVYDE---------------GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA  270 (370)
T ss_pred             EEEEEecCCceEEEEecCCeeEEEEccc---------------ceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence            2222222136777888877766666553               5666777665544444332222222211222345666


Q ss_pred             EEEecCCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          309 AASAVDGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       309 ~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      .....+.-+.+-|..+...   ...+......-..+..+  +.++..+..+ +..+-+....+..         ......
T Consensus       271 Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m---------~~~~g~  338 (370)
T COG5276         271 YVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMM---------DKRPGR  338 (370)
T ss_pred             eeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhc---------ccccCc
Confidence            6666666677777665321   11111111122333332  3344444433 3444444432211         011122


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ...+.+.+.+-+.+.+.....++.+.||+.
T Consensus       339 ~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         339 PTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             ceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            223444555556677778888888888875

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.83  E-value=1.9  Score=42.93  Aligned_cols=86  Identities=12%  Similarity=0.129  Sum_probs=56.3

Q ss_pred             CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC----------CeeE--EeecCCcccCCCCCCCceeEEEEccC---CC
Q 012699          335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ----------GQVL--WTRNCSRFCDPESSKSCRHEMALDVN---GR  399 (458)
Q Consensus       335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~---g~  399 (458)
                      .-.|..|.++|+|++|+..|..| |.|-.+...          +...  .........-.......|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34688999999999999888865 445555321          0100  00000111112234567899999996   58


Q ss_pred             EEEEEeCCccEEEEEccCCCcc
Q 012699          400 RLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       400 ~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      .|++-+.|+.+++||+.....+
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCC
Confidence            9999999999999999755433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.83  E-value=0.0058  Score=54.79  Aligned_cols=142  Identities=12%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeec
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      ....|-|.+.-++.++.+..+..||-. ++...... .++....++|..++..++. +-..+.+.+||+.+....     
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-----  110 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-----  110 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-----
Confidence            445677877778888889899999954 44444333 3455667888888876554 445788999999864211     


Q ss_pred             CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699          376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                        .+...  ....-.-+.|++.+..++.+...+.+.|++..........-.|...+++++|.+.+. .+.++.|.
T Consensus       111 --qLE~g--g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  111 --QLESG--GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             --HHhcc--CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence              11111  111112278999999999999899999999988765555555999999999999875 44455443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.81  E-value=0.15  Score=29.14  Aligned_cols=32  Identities=9%  Similarity=0.195  Sum_probs=27.5

Q ss_pred             ceEEEEEecCCC--eEEEEEcCCCcEEEEEcCCC
Q 012699          193 EIMSLEWECKSD--RLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       193 ~v~~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .+.++.|+|.++  .+|+.+-..|.+.++|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            578999997666  78999988999999999863

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.79  E-value=0.24  Score=49.76  Aligned_cols=161  Identities=10%  Similarity=0.096  Sum_probs=93.5

Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCC----------------ceeeeeeCC-CCCeEEEEEcCCCCEEE--EecCCC
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSAG----------------LQITGWPAH-DSAISSILFGPDETSIF--SLGSDG  357 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----------------~~~~~~~~~-~~~v~~~~~~~~~~~l~--~~~~dg  357 (458)
                      +.++.++.-..+++++..+.+.|+-..+-                .....+..| .-++..+...+|+...+  ..+.+-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            44555665555555555665665543211                011222222 23566667777866544  334455


Q ss_pred             eEEEEeccCCCeeEEeec--CCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699          358 KIIEWSLQNQGQVLWTRN--CSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV  434 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~  434 (458)
                      .|..||+++.........  ...............++.|.|.-. ..++...|+.|++..+...............++++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav  204 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV  204 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence            799999986533221100  000001112233456677887543 34555667888888776554444444566789999


Q ss_pred             EECCCCCeEEEecCCCcEEEEeC
Q 012699          435 DWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       435 ~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +|+|.|+.++.|-..|++.-|..
T Consensus       205 ~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  205 LWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             EeccccceeeEecCCCeEEEeec
Confidence            99999999999999999887753

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.71  E-value=2.7  Score=36.74  Aligned_cols=174  Identities=14%  Similarity=0.150  Sum_probs=96.0

Q ss_pred             eEEEEECCCCceeEEeecCCC----CCcEEEEEEccCC-----CEEEEEec-CCeEEEEeCCCCceeeeeeCC-------
Q 012699          272 SLTVWNMKTWKAMTVLPLGED----PPAITSLCFNHNG-----KILAASAV-DGMIHMFDMSAGLQITGWPAH-------  334 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~-----~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~-------  334 (458)
                      .|.+||+.+.+.++.+.++..    ...+..+.+....     .+++.... .+.|.|||+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            899999999999888877543    3467888887732     24444333 458999999987654433221       


Q ss_pred             ------------CCCeEEEEEcC---CCCEEEEecCCCeEEEEeccCCCe---eEEeec--CCcccCCCCCCCceeEEEE
Q 012699          335 ------------DSAISSILFGP---DETSIFSLGSDGKIIEWSLQNQGQ---VLWTRN--CSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       335 ------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~--~~~~~~~~~~~~~v~~~~~  394 (458)
                                  ...+..++.+|   ++++|+-....+ -++|.+.+.-.   ......  ...+...-........+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                        12356666655   556666554432 13343332100   000000  0000000001134567899


Q ss_pred             ccCCCEEEEEeCCccEEEEEccCCCcccc--cC---CC-CCcEEEEEECC--CCCeEEEe
Q 012699          395 DVNGRRLLVTSGSVRAPIYQVRGHASGMR--TL---PH-GAAITTVDWHP--TLPMFLTG  446 (458)
Q Consensus       395 s~~g~~l~~~~~~~~i~i~~~~~~~~~~~--~~---~h-~~~v~~~~~~~--~~~~l~s~  446 (458)
                      +++|.++++--..+.|..|+..+......  ..   .. -..+.++.+.+  +|.+.+.+
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            99999999989999999999987332211  11   22 35788999999  77755543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.65  E-value=3.4  Score=37.73  Aligned_cols=159  Identities=11%  Similarity=0.004  Sum_probs=81.3

Q ss_pred             CCeEEEEeCCCCCEEEEEe-----------CCC-cEEEEecCCCCCC--CccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          148 SPISCCRFSSSGNNIASAS-----------VDG-TVRIWTYDSSTPA--SRNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~-----------~dg-~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+.-.  ........-.....+++. +++  |++++..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC--EEEeCCC
Confidence            3455788999988776642           123 6666654322211  111112222345778887 555  4444544


Q ss_pred             CcEEEEEcCCC-----c--ee-eeccCCC--CCCceeeeeecCCCCeEEEeecccCCCC------cceeeccceeEEEEE
Q 012699          214 GGIKAWNVDAK-----R--VV-CDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGS------SNIYSWGFASLTVWN  277 (458)
Q Consensus       214 g~i~~wd~~~~-----~--~~-~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~i~i~d  277 (458)
                      ...++.|....     +  .+ ..+....  .......+.+.|++.+.++.+.......      ........|.+.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            43334454321     1  11 1122211  1234778999999987776653211000      000011225677777


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (458)
                      ...++. ..+. .+. .....++|+|+|+++++-.
T Consensus       171 pdg~~~-e~~a-~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       171 PDGGKL-RVVA-HGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCeE-EEEe-cCc-CCCccceECCCCCEEEEcc
Confidence            776543 3332 232 3457899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.54  E-value=0.23  Score=41.21  Aligned_cols=74  Identities=18%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC-----CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP-----ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      +..++.+|++.+.+|.+++||+.+.+..........+...     ......|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456889999999999999999987665443222222211     14566788899998988776654 57788888754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.46  E-value=5.5  Score=39.20  Aligned_cols=114  Identities=6%  Similarity=0.022  Sum_probs=75.7

Q ss_pred             cEEEEEEcc--CCCEEEEEecCCeEEEEeCCC-------C-------------ceeeeeeCCCCCeEEEEEc--CCCCEE
Q 012699          295 AITSLCFNH--NGKILAASAVDGMIHMFDMSA-------G-------------LQITGWPAHDSAISSILFG--PDETSI  350 (458)
Q Consensus       295 ~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l  350 (458)
                      .|+.+....  +...|+++..||.|.+|.+++       .             ++...+. -...+++++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence            355555443  345788899999999997631       0             1122222 24578999998  788899


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-----C-EEEEEeCCccEEEEEc
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-----R-RLLVTSGSVRAPIYQV  415 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~-~l~~~~~~~~i~i~~~  415 (458)
                      |+++....|.||-........      .......+...|.+++|-++.     . .|++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERF------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEecccccc------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            999988889888776531111      011122366778889987643     2 6777788899998888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.38  E-value=0.27  Score=28.09  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             cEEEEEEccCC---CEEEEEecCCeEEEEeCCC
Q 012699          295 AITSLCFNHNG---KILAASAVDGMIHMFDMSA  324 (458)
Q Consensus       295 ~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~  324 (458)
                      .+.++.|+|+.   .+|+..-..|.|.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.38  E-value=1.5  Score=32.52  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEec----CCCeEEEEEcCCCcEEEEEc
Q 012699          151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWEC----KSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~  221 (458)
                      ..-+|......|+.++.-|.|.|++.......     .......-...|.+++--+    .....|+.|+. ..+..||+
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34466666677888888999999987644321     1223344456677776443    23456777665 47999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeec---C-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCS---P-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      ..+..+..-..++   .+.++.+-   . ..++++.++.              ..|.-||....+....
T Consensus        81 ~~N~d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGGn--------------csi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   81 ENNSDLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGGN--------------CSIQGFDYEGNEIFWT  132 (136)
T ss_pred             ccCchhhhhhCcc---ceeEEEEEecCCCCCcEEEECce--------------EEEEEeCCCCcEEEEE
Confidence            9877665444443   34444442   2 2334444443              4777777766555443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.12  E-value=2  Score=39.54  Aligned_cols=134  Identities=13%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             CCCEEE-EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC--------CEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          304 NGKILA-ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE--------TSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       304 ~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      +..+|+ .|.....++-.|++-|+.+..+..|...  -+.|.|+.        ..|+ |-.+..|.-.|.+-.+..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence            344443 4555667888899999999999888775  47777742        2344 4444455555555433222111


Q ss_pred             cCCcccCCCCCCCceeEEEEc----cCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          375 NCSRFCDPESSKSCRHEMALD----VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      .         .....+.-.||    ....++|+++..|.|++||--+......+.+....|..+..+.+|+++++.+..
T Consensus       555 e---------sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         555 E---------SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             e---------ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            1         11122222333    245689999999999999987765556666777899999999999966655543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.12  E-value=0.81  Score=47.03  Aligned_cols=144  Identities=8%  Similarity=0.113  Sum_probs=88.6

Q ss_pred             ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE--------cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILF--------GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       312 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      +.|..+.+|+.+++.....+.+-...|..+..        .|.=++++..+.--.|.++-+.-.................
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35888999999997777777776667766653        3333455555555556666554322111110000111122


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEcc--CC-----C-----------------cccccC-CCCCcEEEEEECC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR--GH-----A-----------------SGMRTL-PHGAAITTVDWHP  438 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~--~~-----~-----------------~~~~~~-~h~~~v~~~~~~~  438 (458)
                      ..+..|.++....+|+.+++|- ||  .+|.+.  ..     +                 .+..+. .+.++|..+....
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            3456688888778888776554 44  445432  10     0                 011222 4678999999998


Q ss_pred             CCCeEEEecCCCcEEEEeCC
Q 012699          439 TLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       439 ~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ....|.+-++.|+|++|++.
T Consensus       253 SR~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             ccceeeeeccCceEEEEEcc
Confidence            88899999999999999973

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.98  E-value=8  Score=39.30  Aligned_cols=172  Identities=12%  Similarity=0.162  Sum_probs=90.8

Q ss_pred             eEEEEECCCCceeEEeecCCC--CCcEEEEEEccCCC--EEEEEec-----------CCeEEEEeCC-CCceeeeee--C
Q 012699          272 SLTVWNMKTWKAMTVLPLGED--PPAITSLCFNHNGK--ILAASAV-----------DGMIHMFDMS-AGLQITGWP--A  333 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~--~l~~~~~-----------dg~i~v~d~~-~~~~~~~~~--~  333 (458)
                      .|+++|..+++.+..+.+...  .-.+....|+....  ++++|..           +|.++.|++- .++.+.-+.  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            689999999888877765433  22456666665332  4444432           3457777753 344332222  1


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      -.+++.  +..|-..++++| ....+++||+.+.+....       .........|..+.+  .+..+++|.....++++
T Consensus       934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk-------~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRK-------CELKFIPNRISSIQT--YGARIVVGDIQESVHFV 1001 (1205)
T ss_pred             CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhh-------hhhccCceEEEEEee--cceEEEEeeccceEEEE
Confidence            233443  445655555544 456899999987543321       111112334454444  56677777766555555


Q ss_pred             EccCCC-cccccC--CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          414 QVRGHA-SGMRTL--PHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       414 ~~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ..+... .+..+.  .-...|+++.+-. -..+|.+..=|.+.+-.
T Consensus      1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELLD-YDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred             EEecCCCeEEEEeCCCccceeeEEEEec-CCceeeccccCcEEEEE
Confidence            443322 222222  2334566666543 33466666656665543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.95  E-value=0.47  Score=39.42  Aligned_cols=66  Identities=18%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             EEEccCCCEEEEEeCCccEEEEEccCCCccccc------C--------CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT------L--------PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~------~--------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +.+..++++|++.+.+|.+++||+...+.....      .        .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            345678999999999999999999887654332      1        2456789999999998777665 578888875


Q ss_pred             C
Q 012699          458 S  458 (458)
Q Consensus       458 ~  458 (458)
                      +
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.92  E-value=3.8  Score=35.35  Aligned_cols=182  Identities=15%  Similarity=0.205  Sum_probs=101.8

Q ss_pred             EEEEEeCCCcEEEEecCCCCC--CCccccccC--CCc-eEEEEEec-CCCeEEEEE-cCCCcEEEEEcCCCceeee--cc
Q 012699          161 NIASASVDGTVRIWTYDSSTP--ASRNATIYC--GTE-IMSLEWEC-KSDRLLLIG-TADGGIKAWNVDAKRVVCD--LN  231 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~--~~~-v~~~~~~~-~~~~~l~~~-~~dg~i~~wd~~~~~~~~~--~~  231 (458)
                      .++.+++||+|.-|...-...  .........  ... -..+++.+ ..+.+|+.+ -..++|.++|-.-.+....  +.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            367788999999998533322  011111111  122 33445442 223444444 4578999998554332110  11


Q ss_pred             CC---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-----
Q 012699          232 TT---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-----  303 (458)
Q Consensus       232 ~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-----  303 (458)
                      ..   ... ....+.- -.+.++++-............+.+.|.|-+||+.. +.++++...+.-.....|+..|     
T Consensus       182 DP~iPagy-APFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       182 DPALPAGY-APFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             CCCCCCCC-CCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCC
Confidence            00   000 0111111 12334444333333334556666778999999874 6677675555555567777766     


Q ss_pred             -CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC------CeEEEEEcC
Q 012699          304 -NGKILAASAVDGMIHMFDMSAGLQITGWPAHDS------AISSILFGP  345 (458)
Q Consensus       304 -~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~v~~~~~~~  345 (458)
                       .+.+|+---.||+|..||..+++.+-.+....+      .++.|+|-.
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence             456677666799999999999888777765433      467777754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.66  E-value=4.5  Score=35.36  Aligned_cols=175  Identities=12%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             cEEEEEcCCCceeeeccCCCC----CCceeeeeecCCCC-----eEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          215 GIKAWNVDAKRVVCDLNTTDA----FPSVLDLKCSPVEP-----IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                      .|.+||+.+++.++++..+..    .+...++.+.....     ++..+...            .+.|.++|+.+++..+
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~------------~~glIV~dl~~~~s~R  102 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG------------GPGLIVYDLATGKSWR  102 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT------------TCEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC------------cCcEEEEEccCCcEEE
Confidence            466677777777666554432    13455666655322     22222222            2589999999877655


Q ss_pred             EeecCCC-----------------CCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCC-----Cc---------eeeee
Q 012699          286 VLPLGED-----------------PPAITSLCFNH---NGKILAASAVDGMIHMFDMSA-----GL---------QITGW  331 (458)
Q Consensus       286 ~~~~~~~-----------------~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~-----~~---------~~~~~  331 (458)
                      .......                 ...+..++.+|   +++.|+-....+ -++|.+.+     ..         .+..+
T Consensus       103 v~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l  181 (287)
T PF03022_consen  103 VLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL  181 (287)
T ss_dssp             EETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE
T ss_pred             EecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec
Confidence            4421111                 12355666655   566666654433 23333321     10         11222


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc--CCCEEEEEe
Q 012699          332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV--NGRRLLVTS  405 (458)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~  405 (458)
                      -........++++++|..+++--..+.|..|+..+.-.....   ..+......-..+..+.+.+  +|.+.+...
T Consensus       182 G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~---~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  182 GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENF---EILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCE---EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccch---heeEEcCceeeccceeeeccccCceEEEEEC
Confidence            111235667889999988888888999999998862111000   00000111134577888888  776655543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK10115 protease 2; Provisional

Probab=93.65  E-value=8.6  Score=38.54  Aligned_cols=197  Identities=9%  Similarity=0.001  Sum_probs=97.5

Q ss_pred             CeEEEEeCCCCCEEEEEeC-----CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEE
Q 012699          149 PISCCRFSSSGNNIASASV-----DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKA  218 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~  218 (458)
                      .+..+.++||+++|+.+..     ..++++-|+.++..+..  .... .. ..++|.+.+..++++...+     ..|..
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            3667889999998876532     23588889987753321  1111 12 4589985444455554422     36777


Q ss_pred             EEcCCC--ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC--CCceeEEeecCCCCC
Q 012699          219 WNVDAK--RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK--TWKAMTVLPLGEDPP  294 (458)
Q Consensus       219 wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~--~~~~~~~~~~~~~~~  294 (458)
                      +++.++  +....+...... .-.....+.++..++.......          ++.+.+++..  .+.....+... . .
T Consensus       204 h~lgt~~~~d~lv~~e~~~~-~~~~~~~s~d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~-~-~  270 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDT-FYVSLHKTTSKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRR-K-D  270 (686)
T ss_pred             EECCCChhHCeEEEeeCCCC-EEEEEEEcCCCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECC-C-C
Confidence            888877  333333322211 1123334447776654443321          1477888843  33332222211 1 1


Q ss_pred             cEEEEEEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeCC-C-CCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          295 AITSLCFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPAH-D-SAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      ....+. +.. ..|..-+..    ..|...++........+-.+ . ..+..+.+.. +..+++...++.-+++-+.
T Consensus       271 ~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        271 HEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             CEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEc
Confidence            122222 223 333333322    23444455421122233334 3 3677788773 3455566667776655544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.62  E-value=2.8  Score=38.11  Aligned_cols=139  Identities=13%  Similarity=0.099  Sum_probs=84.4

Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCC---CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      +.+-|...++.|++. ..|.+.=|-...   .-++..-....++|.++.|++|.+.||.--.|.+|.+++..........
T Consensus        26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            445555444444443 334455554432   1222222345679999999999999999999999999998432211100


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeE
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMF  443 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  443 (458)
                           ..........|....|+.+ .-+|..+..| +.+|.....+...+.. .|...|+=..|.|+.+.+
T Consensus       105 -----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  105 -----TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI  168 (657)
T ss_pred             -----HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence                 0011123345888899877 4555555555 6777665554433333 688889999999988843

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=1.7  Score=40.10  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEE-----c----cCCCcc--cccC---------CCCCcEEEEEECCCC---CeEE
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQ-----V----RGHASG--MRTL---------PHGAAITTVDWHPTL---PMFL  444 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~-----~----~~~~~~--~~~~---------~h~~~v~~~~~~~~~---~~l~  444 (458)
                      .|..+..++.|..++.++.+|.+.++=     .    +.++..  .+..         ...-.+..++|||+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            467788899999999888888443322     1    112111  0111         122357788999987   4777


Q ss_pred             EecCCCcEEEEeCC
Q 012699          445 TGSADHSVQVMSLS  458 (458)
Q Consensus       445 s~~~dg~v~iw~l~  458 (458)
                      .-..|.+||+|+++
T Consensus       185 iL~sdnviRiy~lS  198 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLS  198 (741)
T ss_pred             EEecCcEEEEEecC
Confidence            77889999999975

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.43  E-value=1.8  Score=39.19  Aligned_cols=160  Identities=16%  Similarity=0.222  Sum_probs=93.9

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc----EE-EEEEccCCCEEEEE
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA----IT-SLCFNHNGKILAAS  311 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~----i~-~~~~~~~~~~l~~~  311 (458)
                      ..+..+-..|+++.+..-+..              .+.++++.+......--.+..++.    |+ .+..-..|.-+.++
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g~--------------~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~  286 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTGS--------------ELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVV  286 (733)
T ss_pred             cchHhhEECCCCCEEEEecCC--------------eEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEE
Confidence            567788899999988776664              888888765332221111111221    11 11122346678888


Q ss_pred             ecCCeEEEE-eCCC-Cce----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          312 AVDGMIHMF-DMSA-GLQ----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       312 ~~dg~i~v~-d~~~-~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      +.||.|.-| |.+. +.+    ++.++-...++..+.-..+.+-+++-+..|++.++.-...+.....          ..
T Consensus       287 ~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~----------~~  356 (733)
T COG4590         287 HEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE----------RA  356 (733)
T ss_pred             cCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh----------hh
Confidence            899988766 4443 221    2222222344444443334556777888888888776544333322          12


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      -..+..+++||.+.+|++- ..|.++++.+++..+.
T Consensus       357 ~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         357 YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             hcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence            2245678999999999764 3466999998876543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.25  E-value=2.9  Score=40.81  Aligned_cols=135  Identities=10%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             EEEEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-----EEEEeccCCC
Q 012699          298 SLCFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK-----IIEWSLQNQG  368 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~  368 (458)
                      -+.|.-|..+.+++...    ..+++|.-+ |+.-..-...++.-..+.|-|+|..+++-..||.     |+++.-+...
T Consensus       206 ~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr  284 (1243)
T COG5290         206 IIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR  284 (1243)
T ss_pred             EEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence            35666666677666543    346666532 3222111222333446899999999998876553     5555543211


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      .-       .+....+....+..++|+-....++++ ..+.+.+|....-.-..+..-.-..+.-+.|+|...
T Consensus       285 HG-------ef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~  349 (1243)
T COG5290         285 HG-------EFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK  349 (1243)
T ss_pred             cC-------CccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence            00       110111222334556666655555543 345688887654321111111223455667777644

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.06  E-value=6.4  Score=38.35  Aligned_cols=198  Identities=11%  Similarity=0.098  Sum_probs=96.8

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGED  292 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~~  292 (458)
                      -.|+||+.. |+.+..+....  +.+..+.|+.+..+++..-.              |.+.+|++-...... ..-.+..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~--~~lI~mgWs~~eeLI~v~k~--------------g~v~Vy~~~ge~ie~~svg~e~~  126 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKH--GELIGMGWSDDEELICVQKD--------------GTVHVYGLLGEFIESNSVGFESQ  126 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcC--CCeeeecccCCceEEEEecc--------------ceEEEeecchhhhcccccccccc
Confidence            357777764 44444433332  36888999988777665543              599999976422211 1111222


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCC--CeEEEEEcCCCC---EEEEec-CCCeEEEEecc
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-HDS--AISSILFGPDET---SIFSLG-SDGKIIEWSLQ  365 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~--~v~~~~~~~~~~---~l~~~~-~dg~i~iwd~~  365 (458)
                      ...|..+.+..+|-  ++-..+|.+.+-+-.....+.+++. ...  +-.|-...+++.   .++-.. ..+ ..++-..
T Consensus       127 ~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~  203 (829)
T KOG2280|consen  127 MSDIVECRFFHNGV--AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVE  203 (829)
T ss_pred             cCceeEEEEecCce--EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccccee
Confidence            33466666666663  3334455555544222222333322 111  112222222211   111110 000 0111111


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCC
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPT  439 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~  439 (458)
                      ....        ...........+..+..||+.++|+.-...|.+.+-+.+..+....+. +-..+...++|.-+
T Consensus       204 ~~~~--------q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  204 ESRV--------QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN  270 (829)
T ss_pred             cccc--------cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence            1100        111111224568889999999999999999999998887665444433 12223335555443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.96  E-value=5.2  Score=37.17  Aligned_cols=73  Identities=16%  Similarity=0.234  Sum_probs=43.8

Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeC---------CCCceeeeee-----------CCCCCeEEEEEcCCC---CEEE
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDM---------SAGLQITGWP-----------AHDSAISSILFGPDE---TSIF  351 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l~  351 (458)
                      .|..+..++.|..++..+.+|.+.++=.         +.++.....+           ...-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            5677888999999998888886554431         1222211100           111245566777754   4566


Q ss_pred             EecCCCeEEEEeccCC
Q 012699          352 SLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       352 ~~~~dg~i~iwd~~~~  367 (458)
                      .-+.|..|++||+...
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            6667777777777654

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.82  E-value=5.2  Score=37.42  Aligned_cols=29  Identities=31%  Similarity=0.399  Sum_probs=24.6

Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .|.+++..+..+.|++...+|.|.+|++.
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            39999999999999999999999999973

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PRK10115 protease 2; Provisional

Probab=92.64  E-value=12  Score=37.48  Aligned_cols=116  Identities=9%  Similarity=-0.007  Sum_probs=66.9

Q ss_pred             ceEEEEEecCCCeEEEEEc-CCC----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          193 EIMSLEWECKSDRLLLIGT-ADG----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~-~dg----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      .+..+.|+ +++++|+.+. .+|    .|++.|+.++..+......    .-..++|.++++.++....+....      
T Consensus       128 ~l~~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----~~~~~~w~~D~~~~~y~~~~~~~~------  196 (686)
T PRK10115        128 TLGGMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----VEPSFVWANDSWTFYYVRKHPVTL------  196 (686)
T ss_pred             EEeEEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----cceEEEEeeCCCEEEEEEecCCCC------
Confidence            45667788 5666665543 333    6889999888643221111    114599999998777766542100      


Q ss_pred             ccceeEEEEECCCC--ceeEEeecCCCCCcEE-EEEEccCCCEEEEEec---CCeEEEEeC
Q 012699          268 WGFASLTVWNMKTW--KAMTVLPLGEDPPAIT-SLCFNHNGKILAASAV---DGMIHMFDM  322 (458)
Q Consensus       268 ~~~g~i~i~d~~~~--~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~v~d~  322 (458)
                       ....|..+++.++  +....+.  +...... ....+.++++++..+.   ++.+.+++.
T Consensus       197 -~~~~v~~h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        197 -LPYQVWRHTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             -CCCEEEEEECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence             1137888999887  3334443  2212222 3344447887765544   357888885

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.63  E-value=2.3  Score=39.02  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=60.3

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC--------------
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS--------------  203 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------  203 (458)
                      .....|......+.+++.+|++++.|+...=|.|.++|+.++..+....-.. ...+.-+......              
T Consensus       298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~  376 (415)
T PF14655_consen  298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSS  376 (415)
T ss_pred             ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCC
Confidence            3445566677779999999999988888778999999998876553222111 1111111100000              


Q ss_pred             --C-eEEEEEcCCCcEEEEEcCCCceeeeccCC
Q 012699          204 --D-RLLLIGTADGGIKAWNVDAKRVVCDLNTT  233 (458)
Q Consensus       204 --~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  233 (458)
                        . -+++-+-.-|.|.+|.+++|..+..+...
T Consensus       377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             cceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence              1 13444666889999999998877665543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.54  E-value=3.1  Score=35.06  Aligned_cols=144  Identities=14%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-C--CeEEEEeCCCCceeeeee------CCCCCeEEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-D--GMIHMFDMSAGLQITGWP------AHDSAISSIL  342 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~------~~~~~v~~~~  342 (458)
                      .-.+||+.+++..... .. .......-++-+||++|.+|+. +  ..+++++.........+.      .....--.+.
T Consensus        47 ~s~~yD~~tn~~rpl~-v~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~  124 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLT-VQ-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT  124 (243)
T ss_pred             EEEEEecCCCcEEecc-CC-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence            5678898887665432 21 1122333457789999999875 2  357888754300000111      1112223344


Q ss_pred             EcCCCCEEEEecCCC-eEEEEeccCCC-eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          343 FGPDETSIFSLGSDG-KIIEWSLQNQG-QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg-~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                      .-|||+.|+.|+.+. +..+|.-.... ............. ......-..+...|+|++++.+..+.  .|||..+...
T Consensus       125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v  201 (243)
T PF07250_consen  125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV  201 (243)
T ss_pred             ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc-cCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence            457999999888864 34444432211 1111100000000 11222334577889999998888765  5567776643

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.51  E-value=8  Score=35.04  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCC
Q 012699          409 RAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       409 ~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                      .+.+||.++.+- ....... ..-...+..-++++++.||.+.
T Consensus       291 ~~e~yd~~~~~W-~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKW-SKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcc-cccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            467888765421 1111111 1112223445678888888763

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.43  E-value=0.22  Score=48.64  Aligned_cols=95  Identities=15%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             eeEEEEECC--CCceeEEeec---CCCCCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699          271 ASLTVWNMK--TWKAMTVLPL---GEDPPAITSLCFNH---NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL  342 (458)
Q Consensus       271 g~i~i~d~~--~~~~~~~~~~---~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~  342 (458)
                      |.+.+||+.  .|+....+..   ......+.-+.|.|   +.-++..+-.++.+++........ ..+..|...+..++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            588888875  3443332221   11223345556655   566778888889998887654322 33455766555543


Q ss_pred             -----------EcCCCCEEEEecCCCeEEEEeccC
Q 012699          343 -----------FGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       343 -----------~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                                 .+|||+.|++++.||.+++|.+.-
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence                       589999999999999999998753

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.16  E-value=8.5  Score=34.57  Aligned_cols=250  Identities=18%  Similarity=0.211  Sum_probs=115.1

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeecc--CCCCCCceeeeeecCC----CCeEEEeecc-cCCCC
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLN--TTDAFPSVLDLKCSPV----EPIFVSAAAS-RRYGS  262 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~--~~~~~~~v~~~~~~~~----~~~~~~~~~~-~~~~~  262 (458)
                      ..+.|+|. ++++++++ ...|.|++++ ..+..   +..+.  ..........++++|+    +.+.++.... .... 
T Consensus         3 ~P~~~a~~-pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~-   78 (331)
T PF07995_consen    3 NPRSMAFL-PDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG-   78 (331)
T ss_dssp             SEEEEEEE-TTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS-
T ss_pred             CceEEEEe-CCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC-
Confidence            35789999 56766554 5699999999 33332   22221  1122356788999994    3333333321 0000 


Q ss_pred             cceeeccceeEEEEECCCC-------cee-EEeec-CCCCCcEEEEEEccCCCEEEEEecC-------------CeEEEE
Q 012699          263 SNIYSWGFASLTVWNMKTW-------KAM-TVLPL-GEDPPAITSLCFNHNGKILAASAVD-------------GMIHMF  320 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~-------~~~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~v~  320 (458)
                           .....|.-|.....       +.+ ..+.. .........|+|.|+|.+.++.+..             |.|.-.
T Consensus        79 -----~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri  153 (331)
T PF07995_consen   79 -----DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRI  153 (331)
T ss_dssp             -----SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred             -----CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEe
Confidence                 00013433433322       111 11111 1122346779999999655554432             233333


Q ss_pred             eCCCCce-------------eeee-eCCCCCeEEEEEcCC-CCEEEEe-cCCCeEEEEeccCCCeeEEe-----------
Q 012699          321 DMSAGLQ-------------ITGW-PAHDSAISSILFGPD-ETSIFSL-GSDGKIIEWSLQNQGQVLWT-----------  373 (458)
Q Consensus       321 d~~~~~~-------------~~~~-~~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~-----------  373 (458)
                      +.. ++.             ...+ .++. ....++|+|. |+++++= +.|+.=.|--+..+..--|.           
T Consensus       154 ~~d-G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~  231 (331)
T PF07995_consen  154 DPD-GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP  231 (331)
T ss_dssp             ETT-SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS
T ss_pred             ccc-CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC
Confidence            322 110             0011 1222 2457899998 6544321 22332233333322211000           


Q ss_pred             -----ecCCcccCC---CCCCCceeEEEEcc-------CCCEEEEEeCCccEEEEEccCCCccc---ccC-CCCCcEEEE
Q 012699          374 -----RNCSRFCDP---ESSKSCRHEMALDV-------NGRRLLVTSGSVRAPIYQVRGHASGM---RTL-PHGAAITTV  434 (458)
Q Consensus       374 -----~~~~~~~~~---~~~~~~v~~~~~s~-------~g~~l~~~~~~~~i~i~~~~~~~~~~---~~~-~h~~~v~~~  434 (458)
                           ..+.....+   ..+...+..+.|-.       .|.+++..-..+.|....++....+.   .+. .....+.++
T Consensus       232 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v  311 (331)
T PF07995_consen  232 PIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV  311 (331)
T ss_dssp             -ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred             ccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence                 000000000   11224455566653       44566665556788888876443221   112 344589999


Q ss_pred             EECCCCCeEEEecCCCcEE
Q 012699          435 DWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       435 ~~~~~~~~l~s~~~dg~v~  453 (458)
                      ++.|||.++++-+.+|.|.
T Consensus       312 ~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEETTSEEEEEE-TTTTEE
T ss_pred             EEcCCCeEEEEECCCCeEe
Confidence            9999999888888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.12  E-value=5.4  Score=32.25  Aligned_cols=183  Identities=11%  Similarity=0.109  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCC--CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          203 SDRLLLIGTAD--GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       203 ~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      ++.++.+.+.-  ..|++||+.+++.+.......  ..+..--...-+..            .....+.+|.-..+|.++
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~------------~y~LTw~egvaf~~d~~t  120 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDY------------FYQLTWKEGVAFKYDADT  120 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccce------------EEEEEeccceeEEEChHH
Confidence            55666666553  379999999998776544331  11111111111111            122233346888899998


Q ss_pred             CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC--CC---CCeEEEEEcCCCCEEEEecC
Q 012699          281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA--HD---SAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~  355 (458)
                      .+.+..+..++..   ..++  .+++-|+.+.....++.-|.++.....+...  ..   ..++.+.| -+|...|-.=.
T Consensus       121 ~~~lg~~~y~GeG---WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~  194 (262)
T COG3823         121 LEELGRFSYEGEG---WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQ  194 (262)
T ss_pred             hhhhcccccCCcc---eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeee
Confidence            8888888765542   3343  3455566665555677767655433332221  11   12233444 24544443333


Q ss_pred             CCeEEEEeccCCCeeEEeecCC---cccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          356 DGKIIEWSLQNQGQVLWTRNCS---RFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       356 dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      +..|...+..+++...+.....   .......+..-.+.+++.|++..++..+
T Consensus       195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            4445555555544433322111   1111122344577899999885554443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.88  E-value=16  Score=37.22  Aligned_cols=132  Identities=16%  Similarity=0.208  Sum_probs=80.4

Q ss_pred             CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699          190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG  269 (458)
Q Consensus       190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (458)
                      .+.+...++|+|.+...|+.....|...||++.......        .....+.....                      
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~--------~~~~~~~~~~~----------------------  193 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK--------SSNLRLSRNIS----------------------  193 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccC--------CcceeeccCCC----------------------
Confidence            345788999999888899999999999999992211100        11111111111                      


Q ss_pred             ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCC
Q 012699          270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDE  347 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~  347 (458)
                       |.| ++|..           .+ ..-..+.|.++...|++++ ...+.++|+++.....  ........|..+.-+|..
T Consensus       194 -gsi-~~d~~-----------e~-s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~  258 (765)
T PF10214_consen  194 -GSI-IFDPE-----------EL-SNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDN  258 (765)
T ss_pred             -ccc-cCCCc-----------cc-CcceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCc
Confidence             233 12211           11 3456788988877888765 4569999998765522  122345678888888862


Q ss_pred             -CEEEEecCCCeEEEEeccCC
Q 012699          348 -TSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       348 -~~l~~~~~dg~i~iwd~~~~  367 (458)
                       .+++.-+ ...|...++...
T Consensus       259 ~~~~FiLT-s~eiiw~~~~~~  278 (765)
T PF10214_consen  259 PSHVFILT-SKEIIWLDVKSS  278 (765)
T ss_pred             cceEEEEe-cCeEEEEEccCC
Confidence             2333332 357888888763

These proteins are found in fungi.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.70  E-value=6.4  Score=32.17  Aligned_cols=49  Identities=8%  Similarity=0.211  Sum_probs=36.9

Q ss_pred             CEEEEEecCCeEEEEeCCC--CceeeeeeCCCCCeEEEEEcCCCCEEEEecC
Q 012699          306 KILAASAVDGMIHMFDMSA--GLQITGWPAHDSAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  355 (458)
                      +.|+.+.....|.+|++.+  .+.+.++.. -+.|..+.++..|++|+|--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence            4555546678899999883  455666654 478999999999999998754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.70  E-value=9.5  Score=34.14  Aligned_cols=63  Identities=8%  Similarity=0.179  Sum_probs=33.7

Q ss_pred             CCCEEEEEec-----CCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCCCe----EEEEeccCC
Q 012699          304 NGKILAASAV-----DGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSDGK----IIEWSLQNQ  367 (458)
Q Consensus       304 ~~~~l~~~~~-----dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~~  367 (458)
                      +++..+.|+.     ...+..||+.+.+...  .+.. .......+...+++..+.|+.++.    +..||..+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            4566666664     2368889987654332  1221 111122222345667777776543    457777654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.61  E-value=6.6  Score=35.85  Aligned_cols=102  Identities=13%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe--ecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL--PLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                      ++|.++.|++|.+.++..-.+.             .|.+++....+.....  +.......|....|+.+ .-+|.-+..
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~-------------~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~  132 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSK-------------TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ  132 (657)
T ss_pred             CceeEEEeccCcceEEEEecCc-------------eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC
Confidence            6899999999999999988874             9999987543333222  22233345888999876 445555544


Q ss_pred             CeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          315 GMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       315 g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      | +.+|.... .+.++..+.|...|.--.|.++.+.+.-+
T Consensus       133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            4 66776543 33455556677788888888877654433

>PLN02193 nitrile-specifier protein

Probab=91.49  E-value=13  Score=35.35  Aligned_cols=154  Identities=12%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             CCeEEEEEcCC-----CcEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          203 SDRLLLIGTAD-----GGIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       203 ~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      ++.+++.|+.+     ..+..||+.+.+......... ........+..-++++++.++.+....        ...+..|
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~--------~~~~~~y  299 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATAR--------LKTLDSY  299 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCC--------cceEEEE
Confidence            56677777754     357889988876543222110 001111112223455666666542110        1367888


Q ss_pred             ECCCCceeEEeecC---CCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeC---CC-CCeEEEEEcC
Q 012699          277 NMKTWKAMTVLPLG---EDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPA---HD-SAISSILFGP  345 (458)
Q Consensus       277 d~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~---~~-~~v~~~~~~~  345 (458)
                      |+.+.+-...-...   ...... .++. -+++.++.++.+    ..+.+||+.+.+....-..   .. ....+++ .-
T Consensus       300 d~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~  376 (470)
T PLN02193        300 NIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AV  376 (470)
T ss_pred             ECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EE
Confidence            88775543221100   011111 1222 256677777655    4689999987654322110   11 1111222 23


Q ss_pred             CCCEEEEecCC--------------CeEEEEeccCC
Q 012699          346 DETSIFSLGSD--------------GKIIEWSLQNQ  367 (458)
Q Consensus       346 ~~~~l~~~~~d--------------g~i~iwd~~~~  367 (458)
                      ++++++.|+.+              ..+.+||+.+.
T Consensus       377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             CCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence            56677777753              24778887654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.46  E-value=1.7  Score=39.38  Aligned_cols=175  Identities=14%  Similarity=0.147  Sum_probs=96.0

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCC----ceE-EEEEecCCCeEEEEEcCCCc
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT----EIM-SLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~  215 (458)
                      +.+..--.+|..+-..|||+.|+.-+. .++.++++.+.....+......++    .|. .+..- ..+.-++.+..||.
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~  291 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL  291 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc
Confidence            335555677888889999998876554 678899887665433222111111    122 11111 35667888999999


Q ss_pred             EEEE-EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          216 IKAW-NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       216 i~~w-d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      |.-| |++.+...       +..-+....+.|....++.....+   ..++.-..+|++.++.....+..-.-   .-..
T Consensus       292 vsQWFdvr~~~~p-------~l~h~R~f~l~pa~~~~l~pe~~r---kgF~~l~~~G~L~~f~st~~~~lL~~---~~~~  358 (733)
T COG4590         292 VSQWFDVRRDGQP-------HLNHIRNFKLAPAEVQFLLPETNR---KGFYSLYRNGTLQSFYSTSEKLLLFE---RAYQ  358 (733)
T ss_pred             eeeeeeeecCCCC-------cceeeeccccCcccceeecccccc---ceEEEEcCCCceeeeecccCcceehh---hhhc
Confidence            9877 44432210       111233333333333333222221   11122222357777665443333221   1123


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      .+.-+++||++.++++- ..|.++++.+++..+..++
T Consensus       359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             CcceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence            46778999999998874 4678999999876654443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.31  E-value=12  Score=34.52  Aligned_cols=153  Identities=14%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-  225 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-  225 (458)
                      .+....+..++++.+++.+..-..++-||  .+..............+..+.|. +++..++++...+  .++....++ 
T Consensus       238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~-~dg~l~l~g~~G~--l~~S~d~G~~  312 (398)
T PLN00033        238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWR-ADGGLWLLTRGGG--LYVSKGTGLT  312 (398)
T ss_pred             ccceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEc-CCCCEEEEeCCce--EEEecCCCCc


Q ss_pred             ----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-cCCCCCcEEEEE
Q 012699          226 ----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLC  300 (458)
Q Consensus       226 ----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~  300 (458)
                          .............+.++.+.+++..++++..               -+.+.....++.-.... ...-......+.
T Consensus       313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~---------------G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~  377 (398)
T PLN00033        313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS---------------GILLRSTDGGKSWKRDKGADNIAANLYSVK  377 (398)
T ss_pred             ccccceeecccCCCCcceEEEEEcCCCcEEEEECC---------------CcEEEeCCCCcceeEccccCCCCcceeEEE


Q ss_pred             EccCCCEEEEEecCCeEEEE
Q 012699          301 FNHNGKILAASAVDGMIHMF  320 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~  320 (458)
                      |.++++.+++|. +|.|.-|
T Consensus       378 f~~~~~g~~~G~-~G~il~~  396 (398)
T PLN00033        378 FFDDKKGFVLGN-DGVLLRY  396 (398)
T ss_pred             EcCCCceEEEeC-CcEEEEe

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.14  E-value=1.5  Score=24.85  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=27.7

Q ss_pred             cCCCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 012699          303 HNGKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILF  343 (458)
Q Consensus       303 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~  343 (458)
                      |++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5677776655 4789999999988888877653 33334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.94  E-value=4.4  Score=32.31  Aligned_cols=28  Identities=7%  Similarity=0.336  Sum_probs=24.2

Q ss_pred             CcEEEEEECCCCC------eEEEecCCCcEEEEe
Q 012699          429 AAITTVDWHPTLP------MFLTGSADHSVQVMS  456 (458)
Q Consensus       429 ~~v~~~~~~~~~~------~l~s~~~dg~v~iw~  456 (458)
                      ..+.+++|||.|-      +||+...+|.|.||.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            4899999999652      899999999999996

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.86  E-value=21  Score=36.57  Aligned_cols=73  Identities=25%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             CCCeEEEEeCCCC------CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEec--CC------CeEEEEEcC
Q 012699          147 TSPISCCRFSSSG------NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC--KS------DRLLLIGTA  212 (458)
Q Consensus       147 ~~~v~~~~~~~~~------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~------~~~l~~~~~  212 (458)
                      +..|.|+++.++.      ++++.++.|+++++..+.....+.......-+.++.++.+-+  ..      .-+|.+|-.
T Consensus       582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~  661 (1205)
T KOG1898|consen  582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR  661 (1205)
T ss_pred             ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence            4668899998864      579999999999999988555443333333344444444432  11      235667777


Q ss_pred             CCcEEEE
Q 012699          213 DGGIKAW  219 (458)
Q Consensus       213 dg~i~~w  219 (458)
                      +|.+.-.
T Consensus       662 NGvllR~  668 (1205)
T KOG1898|consen  662 NGVLLRF  668 (1205)
T ss_pred             ccEEEEE
Confidence            7765543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.83  E-value=0.14  Score=49.87  Aligned_cols=139  Identities=8%  Similarity=0.014  Sum_probs=79.6

Q ss_pred             CCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          314 DGMIHMFDMSAGL-QITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       314 dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                      .+.+++-+..+.- ....+++..+.+-.+.|.. +...+.  -.-|.+.+||+.--.-.+....  .+.........+.-
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l--~v~~~~p~gs~~~~  185 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQL--EVTPITPYGSDPQL  185 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccce--EEeecCcCCCCcce
Confidence            4556776654422 1122355667777788733 222222  3346788998864211100000  00011112233344


Q ss_pred             EEEcc---CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEE-----------ECCCCCeEEEecCCCcEEEEeC
Q 012699          392 MALDV---NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD-----------WHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       392 ~~~s~---~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +.|.|   +.-++..+-.++.+++...+.... .-+.+|...+++++           .||||..+|+++.||.++.|.+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            55554   667777777888888887765533 22235776666655           4899999999999999999975

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.79  E-value=12  Score=33.59  Aligned_cols=162  Identities=13%  Similarity=0.111  Sum_probs=87.2

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCc------EEEEecCCC--CCC-----CccccccC--------CCceEEEEEecCCCe
Q 012699          147 TSPISCCRFSSSGNNIASASVDGT------VRIWTYDSS--TPA-----SRNATIYC--------GTEIMSLEWECKSDR  205 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~------v~iwd~~~~--~~~-----~~~~~~~~--------~~~v~~~~~~~~~~~  205 (458)
                      -+.+..+.+.|++..+++.+.+|.      +...++...  ...     ........        .....++++ +.++.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence            355677888865556666666666      554444331  000     00000000        113447777 47888


Q ss_pred             EEEEEcCC------CcEEEEEcCCCceeeeccCC-------------CCCCceeeeeecCCCCeEEEeecccCCCCcce-
Q 012699          206 LLLIGTAD------GGIKAWNVDAKRVVCDLNTT-------------DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNI-  265 (458)
Q Consensus       206 ~l~~~~~d------g~i~~wd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-  265 (458)
                      ++++.-.+      ..|..++.. |+....+..+             ........++++|++..+++............ 
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88877777      788888876 5554443221             12245778999999996666655432111100 


Q ss_pred             --eeccceeEEEEECCC-CceeEE--eecCC-----CCCcEEEEEEccCCCEEEE
Q 012699          266 --YSWGFASLTVWNMKT-WKAMTV--LPLGE-----DPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       266 --~~~~~g~i~i~d~~~-~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~  310 (458)
                        .....-.|..||..+ ++....  +.+..     ....+..+.+-+++++|+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence              011112445556655 323332  33332     3456888888888876664

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.71  E-value=5.5  Score=33.61  Aligned_cols=132  Identities=17%  Similarity=0.168  Sum_probs=70.8

Q ss_pred             EEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCCEEEEecC-C--CeEEEEeccC-CCeeEEeecCCcccCCCCCCCceeE
Q 012699          317 IHMFDMSAGLQITGWPA-HDSAISSILFGPDETSIFSLGS-D--GKIIEWSLQN-QGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                      -.+||+.+++... +.. ...-..+=.+-|||++|.+|+. +  ..+++++..+ .....+...    ...-....+-..
T Consensus        48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~----~~~m~~~RWYpT  122 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES----PNDMQSGRWYPT  122 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC----cccccCCCcccc
Confidence            4688988765432 222 1222233456789999999887 3  3477777544 111111111    111234455666


Q ss_pred             EEEccCCCEEEEEeCCc-cEEEEEccCC-Ccccc--cCCC------CCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          392 MALDVNGRRLLVTSGSV-RAPIYQVRGH-ASGMR--TLPH------GAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~~-~i~i~~~~~~-~~~~~--~~~h------~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                      ...-|||+.|++|+... ...+|.-... .....  +...      ..-=--+...|+|++++.+..++.|.
T Consensus       123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~  194 (243)
T PF07250_consen  123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY  194 (243)
T ss_pred             ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence            77788999999998874 3344443211 11111  1110      00111345679999999888765443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.53  E-value=9.9  Score=33.17  Aligned_cols=121  Identities=11%  Similarity=0.021  Sum_probs=78.9

Q ss_pred             EEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699          173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       173 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      ++|+.+++.+..-....     .+-.|+  ++++.++-+..|.+..+|.++|+........   +....+.|.  |.+++
T Consensus       189 vidv~s~evl~~GLsmP-----hSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f~--G~llv  256 (335)
T TIGR03032       189 VIDIPSGEVVASGLSMP-----HSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAFA--GDFAF  256 (335)
T ss_pred             EEEeCCCCEEEcCccCC-----cCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCccccee--CCEEE
Confidence            35666665442222222     233454  6788888888999999999888765544443   356788888  77776


Q ss_pred             EeecccCCCCcc----e---eeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          253 SAAASRRYGSSN----I---YSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       253 ~~~~~~~~~~~~----~---~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ++....+....+    +   .....+.|.+.|++++..+..+.+++.-..+..++.-|+-
T Consensus       257 VgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~  316 (335)
T TIGR03032       257 VGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV  316 (335)
T ss_pred             EEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence            665443322110    1   0111268899999999999988888877788888888863

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=89.63  E-value=30  Score=36.51  Aligned_cols=281  Identities=11%  Similarity=0.057  Sum_probs=0.0

Q ss_pred             ccCCCCeEEEEeCC--CCCEE-----EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEE-EecCCCeEEEEEcCCCc
Q 012699          144 LGHTSPISCCRFSS--SGNNI-----ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE-WECKSDRLLLIGTADGG  215 (458)
Q Consensus       144 ~~h~~~v~~~~~~~--~~~~l-----~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~  215 (458)
                      .||..+|.|....-  ++..|     +..+.||.+.|=|.   ..+.+...-..-..|..+. -+|...-+++..--||+
T Consensus       344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf---NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgt  420 (1899)
T KOG4659|consen  344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF---NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGT  420 (1899)
T ss_pred             CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc---hheeeecCCCceEEEEEecCCCccceeEEEecCcCce


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      +.+=|..+.+....-........-..=....+|...+.+......+.....                        ..-..
T Consensus       421 lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~d------------------------A~L~~  476 (1899)
T KOG4659|consen  421 LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQD------------------------AQLIF  476 (1899)
T ss_pred             EEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhccc------------------------ceecc


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCC------------------CCceeeeeeCCCCCeEEEEEcC--------CCCE
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMS------------------AGLQITGWPAHDSAISSILFGP--------DETS  349 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~~~--------~~~~  349 (458)
                      ...++|+.+|.+.++  ....|++.|..                  -........-|-...+.++.+|        |.+.
T Consensus       477 PkGIa~dk~g~lYfa--D~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nv  554 (1899)
T KOG4659|consen  477 PKGIAFDKMGNLYFA--DGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNV  554 (1899)
T ss_pred             CCceeEccCCcEEEe--cccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecce


Q ss_pred             EEEecCCCeEEEEeccCCCeeEEe-ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEcc---------
Q 012699          350 IFSLGSDGKIIEWSLQNQGQVLWT-RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVR---------  416 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~---------  416 (458)
                      ++-.+.++.|+|--=+........ .................+++++++|.+.++-+..   ++|+....+         
T Consensus       555 vlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa  634 (1899)
T KOG4659|consen  555 VLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGA  634 (1899)
T ss_pred             EEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCC


Q ss_pred             ---------------CCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          417 ---------------GHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       417 ---------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                                     +........+|-..+.+++.+|||...++-..+-.||
T Consensus       635 ~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr  686 (1899)
T KOG4659|consen  635 KSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR  686 (1899)
T ss_pred             CCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.52  E-value=21  Score=35.31  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=54.2

Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC---CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT---WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                      ..+.|-|+|..+++-+.|+....        -.+.++....   |+.-...   +....+...+|+-....++++ ....
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S--------~~ViFfErNGLrHGef~lr~---~~dEk~~~~~wn~~s~vlav~-~~n~  317 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTS--------ESVIFFERNGLRHGEFDLRV---GCDEKAFLENWNLLSTVLAVA-EGNL  317 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCc--------ceEEEEccCCcccCCccccC---CchhhhhhhhhhHHHHHHHHh-hcce
Confidence            34899999999998876542221        2555554332   2221111   112335566776655555553 4567


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEcCCC
Q 012699          317 IHMFDMSAGLQITGWPAHDSAISSILFGPDE  347 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  347 (458)
                      +.+|-..+-.........-..+.-+.|+|..
T Consensus       318 ~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         318 LKLWTTKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             EEEEEccceEEEEEEeecCCCcceeeecccc
Confidence            9999876644333322233456678999954

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.10  E-value=7.3  Score=40.62  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=84.9

Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEE--------ccCCCEEEEEecCCeEEEEeCCCCce---------eeeeeC
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCF--------NHNGKILAASAVDGMIHMFDMSAGLQ---------ITGWPA  333 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~  333 (458)
                      +.+.+|+..++.....+..-.  ..|..+..        -|.=+++++-..--.|.++-+.-.+.         ..++..
T Consensus        99 n~L~lWny~~~~e~~~~d~~s--htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   99 NNLFLWNYESDNELAEYDGLS--HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             CeEEEEEcCCCCccccccchh--hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            499999999876666554222  33544432        22223444444445566665432111         122223


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec-CCc--------------ccCCC-CCCCceeEEEEccC
Q 012699          334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN-CSR--------------FCDPE-SSKSCRHEMALDVN  397 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--------------~~~~~-~~~~~v~~~~~s~~  397 (458)
                      ....|+++....+|+.+++|- ||  .+|.+.-....-|... |.+              +.... .+..+|..++....
T Consensus       177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            355788999888998777654 55  5666542222212111 111              12222 55678999999999


Q ss_pred             CCEEEEEeCCccEEEEEccC
Q 012699          398 GRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       398 g~~l~~~~~~~~i~i~~~~~  417 (458)
                      -..|++-++.+.|.+|++..
T Consensus       254 R~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cceeeeeccCceEEEEEccC
Confidence            99999999999999999976

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.63  E-value=8.4  Score=28.78  Aligned_cols=110  Identities=13%  Similarity=0.173  Sum_probs=62.9

Q ss_pred             EEecCCCeEEEEEcCCCcEEEEEcCCCc--------eeeeccCCCCCCceeeeeecC-----CCCeEEEeecccCCCCcc
Q 012699          198 EWECKSDRLLLIGTADGGIKAWNVDAKR--------VVCDLNTTDAFPSVLDLKCSP-----VEPIFVSAAASRRYGSSN  264 (458)
Q Consensus       198 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~  264 (458)
                      .|. .....|++++.-|.|.+++.....        .+..+...   ..|++++-.+     ....|+.++..       
T Consensus         5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-------   73 (136)
T PF14781_consen    5 KFD-GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-------   73 (136)
T ss_pred             EeC-CCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-------
Confidence            444 334467777888889998876432        22222222   2344443332     23455555554       


Q ss_pred             eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc----CCCEEEEEecCCeEEEEeCCCCceee
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH----NGKILAASAVDGMIHMFDMSAGLQIT  329 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~  329 (458)
                             .+..||+.....+...   +-+..++++.+-.    ...++++| .+..|.-||.+-.+...
T Consensus        74 -------~llaYDV~~N~d~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   74 -------SLLAYDVENNSDLFYK---EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             -------eEEEEEcccCchhhhh---hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEE
Confidence                   9999999876655432   3345677777643    23455554 46678888866444443

>PRK13615 lipoprotein LpqB; Provisional

Probab=88.63  E-value=24  Score=34.10  Aligned_cols=151  Identities=9%  Similarity=0.043  Sum_probs=89.2

Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      .+++.++++..++....++.++++... +.....+.  ...++.-.|.+++ .+.+.-.+...++......+..... . 
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v-~-  410 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV-A-  410 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe-e-
Confidence            678999999998888777878887655 22222222  2346667788877 6666554444555554433332211 1 


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccC-CCccccc-------CCCCCcEEEEEECCCCCeEEE
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRG-HASGMRT-------LPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~-~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s  445 (458)
                          ..-.....|..+..|+||-.+++..+   .++|++--+.. ...+..+       ..-...+.++.|..++.+.+.
T Consensus       411 ----v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl  486 (557)
T PRK13615        411 ----VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATL  486 (557)
T ss_pred             ----ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEE
Confidence                11123467999999999998887643   35566543322 2211122       112348999999999986555


Q ss_pred             e---cCCCcEEEEeC
Q 012699          446 G---SADHSVQVMSL  457 (458)
Q Consensus       446 ~---~~dg~v~iw~l  457 (458)
                      +   +.+..+++-.+
T Consensus       487 ~~~~~~~~~v~~v~v  501 (557)
T PRK13615        487 TLAPDGERQVELHQV  501 (557)
T ss_pred             eccCCCCceEEEEEC
Confidence            4   33345655544

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.24  E-value=20  Score=32.61  Aligned_cols=195  Identities=9%  Similarity=0.069  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeecc
Q 012699          156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLN  231 (458)
Q Consensus       156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~  231 (458)
                      .|...+++....++-+.+||+..........-.... .-...+.+.-..-.++++...+   ..|++|.+.......+.-
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             CcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc


Q ss_pred             CC------CCCCceeeeeec---CCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCCCc
Q 012699          232 TT------DAFPSVLDLKCS---PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDPPA  295 (458)
Q Consensus       232 ~~------~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~~~  295 (458)
                      ..      .....++.+++.   .++...+......            |.+..|.+..       .+.++.|.....   
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~------------G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ---  209 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKD------------GRVEQYELTDDGDGKVSATLVREFKVGSQ---  209 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETT------------SEEEEEEEEE-TTSSEEEEEEEEEE-SS----
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCC------------ceEEEEEEEeCCCCcEeeEEEEEecCCCc---


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCCC-----CceeeeeeC--CCCCeEEEEEcC----CCCEEEEecCCCeEEEEec
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMSA-----GLQITGWPA--HDSAISSILFGP----DETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~--~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~  364 (458)
                      +..++......+|+.|-++.-|.-|+.+.     ++.+....+  ....|-.|++-.    .|-+|++.-.+++..+|+.
T Consensus       210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             ceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec


Q ss_pred             c
Q 012699          365 Q  365 (458)
Q Consensus       365 ~  365 (458)
                      .
T Consensus       290 ~  290 (381)
T PF02333_consen  290 E  290 (381)
T ss_dssp             S
T ss_pred             C

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.04  E-value=13  Score=30.40  Aligned_cols=145  Identities=11%  Similarity=0.180  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCcEEEEEcC--CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE---ECC
Q 012699          205 RLLLIGTADGGIKAWNVD--AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW---NMK  279 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~---d~~  279 (458)
                      +.|+.+.....|.+|++.  ..+....+.+-   +.|..+.++..|+++++--........       ..+++|   +..
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~-------~fvR~Y~NWr~~   98 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPV-------DFVRAYFNWRSQ   98 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccc-------eEEEEEEEhhhh
Confidence            455555667789999988  33455566555   579999999999999998766532200       133443   111


Q ss_pred             --C---------------------CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-ee-----e
Q 012699          280 --T---------------------WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-IT-----G  330 (458)
Q Consensus       280 --~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~-----~  330 (458)
                        .                     +.....+.++- ...+.+++-.|-..-|++|+ ++.+.+|.+..... ..     .
T Consensus        99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD  176 (215)
T PF14761_consen   99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD  176 (215)
T ss_pred             cccCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence              0                     11122222221 24567788888544455555 55788988754322 11     1


Q ss_pred             ee----CC-C-CCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          331 WP----AH-D-SAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       331 ~~----~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      +.    .| . -....+++.  +.++|..+. -.+++..+
T Consensus       177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  177 FERSLIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             chhhhhheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence            11    11 1 123445554  457776654 46666654

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=88.01  E-value=37  Score=35.51  Aligned_cols=177  Identities=15%  Similarity=0.186  Sum_probs=100.4

Q ss_pred             eccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc---------CCCEEEEEec---------CCeEEEEeCCC----
Q 012699          267 SWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH---------NGKILAASAV---------DGMIHMFDMSA----  324 (458)
Q Consensus       267 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~l~~~~~---------dg~i~v~d~~~----  324 (458)
                      ......|.+....+++.+..+.+... .-+.++....         ...||++|..         .|.+.+||+-.    
T Consensus      1000 ~~~~f~i~LisP~sw~vi~~iefq~~-E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 1000 EGEQFSIQLISPESWEVIDKIEFQEN-EHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred             ccccceeEEecCCccccccccccCcc-ceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence            34446888888888888877665433 2345544431         1247888753         48899999732    


Q ss_pred             -Cceeeee-------eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          325 -GLQITGW-------PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       325 -~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                       +++....       +.-.++|..++= -+| +|+++ ...+|.+|++.....+....-         ..-++.......
T Consensus      1079 pgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~l~r~~~ligVaF---------iD~~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRKLDRDSELIGVAF---------IDLPLYVHSMKV 1146 (1366)
T ss_pred             CCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEEeccCCcceeeEE---------eccceeEEehhh
Confidence             3332211       234567766653 456 44444 345799999954433321110         111122233333


Q ss_pred             CCCEEEEEeCCccEEEEEccCCCcccccCC---CCCcEEEEEECCCCC--eEEEecCCCcEEEEe
Q 012699          397 NGRRLLVTSGSVRAPIYQVRGHASGMRTLP---HGAAITTVDWHPTLP--MFLTGSADHSVQVMS  456 (458)
Q Consensus       397 ~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~  456 (458)
                      -+++|+.|.--..|.+...........+..   ..-.+.++.|--||.  .++.+..|++|+++-
T Consensus      1147 vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred             hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence            445666665555566665554332222222   234678888877776  778889999999874

>PLN02193 nitrile-specifier protein

Probab=87.60  E-value=26  Score=33.33  Aligned_cols=154  Identities=7%  Similarity=0.080  Sum_probs=73.2

Q ss_pred             CCeEEEEEcCC-------CcEEEEEcCCCceeeeccCCCCCC--ceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          203 SDRLLLIGTAD-------GGIKAWNVDAKRVVCDLNTTDAFP--SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       203 ~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      ++.+++.|+.+       ..+.+||+.+.+....-.......  ........-++.+++.++.+...        ....+
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~--------~~ndv  246 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR--------QYNGF  246 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC--------CCccE
Confidence            45666666643       247788888766442111111101  01111222345566666544210        11378


Q ss_pred             EEEECCCCceeEEeecC--CCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeeeee-----CCCCCeEEE
Q 012699          274 TVWNMKTWKAMTVLPLG--EDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITGWP-----AHDSAISSI  341 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~-----~~~~~v~~~  341 (458)
                      ..||+.+.+....-...  ..+..-.+++. -++++.+.|+.++     .+..||+.+.+....-.     ........+
T Consensus       247 ~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~  325 (470)
T PLN02193        247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE  325 (470)
T ss_pred             EEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence            88999876544322211  11111122222 2456666666543     46788887654322110     111111122


Q ss_pred             EEcCCCCEEEEecCC----CeEEEEeccCC
Q 012699          342 LFGPDETSIFSLGSD----GKIIEWSLQNQ  367 (458)
Q Consensus       342 ~~~~~~~~l~~~~~d----g~i~iwd~~~~  367 (458)
                      .  -+++.++.++.+    ..+.+||+.+.
T Consensus       326 ~--~~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        326 V--VQGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             E--ECCcEEEEECCCCCccCceEEEECCCC
Confidence            2  256677777655    45888888765

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.54  E-value=2.4  Score=23.62  Aligned_cols=30  Identities=17%  Similarity=0.240  Sum_probs=19.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEecC-C--CeEEEE
Q 012699          333 AHDSAISSILFGPDETSIFSLGS-D--GKIIEW  362 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iw  362 (458)
                      .....-....|+|||++|+-++. +  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34556778999999998876654 4  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.26  E-value=9.5  Score=30.40  Aligned_cols=32  Identities=25%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             CCceeEEEEccCC------CEEEEEeCCccEEEEEccC
Q 012699          386 KSCRHEMALDVNG------RRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       386 ~~~v~~~~~s~~g------~~l~~~~~~~~i~i~~~~~  417 (458)
                      ...+..++|||.|      -+|++-+.++.+.||....
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3478999999954      3788889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.19  E-value=22  Score=31.86  Aligned_cols=115  Identities=8%  Similarity=0.119  Sum_probs=55.5

Q ss_pred             CCeEEEEEcCCC-----cEEEEEcCCCcee---eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699          203 SDRLLLIGTADG-----GIKAWNVDAKRVV---CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       203 ~~~~l~~~~~dg-----~i~~wd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  274 (458)
                      ++.+++.|+.++     .+..||+.+.+..   ..+..... ......+..-++.+.+.++.....        ....+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~-~~~~~~~~~~~~~iYv~GG~~~~~--------~~~~v~  142 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF-TFENGSACYKDGTLYVGGGNRNGK--------PSNKSY  142 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc-CccCceEEEECCEEEEEeCcCCCc--------cCceEE
Confidence            456777777543     5667777766531   11111110 111111222345566666542110        013788


Q ss_pred             EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC----eEEEEeCCCCce
Q 012699          275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG----MIHMFDMSAGLQ  327 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~  327 (458)
                      .||+.+.+-...-.+.... .....+...++++.+.|+.++    .+.+||..+.+.
T Consensus       143 ~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       143 LFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             EEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            9998875543322222111 112222234566777777653    356889876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=86.89  E-value=29  Score=33.11  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=65.8

Q ss_pred             CCeEEEEEcCCC------cEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE
Q 012699          203 SDRLLLIGTADG------GIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV  275 (458)
Q Consensus       203 ~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i  275 (458)
                      +..+++.|+.+.      .+..+|+.+.+......... ........+..-+..+++.|+.+....       ....+.+
T Consensus       122 ~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~-------~~ndl~i  194 (482)
T KOG0379|consen  122 GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD-------SLNDLHI  194 (482)
T ss_pred             CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc-------ceeeeee
Confidence            467777788775      78999999887655444333 222223333333455666666654322       2258999


Q ss_pred             EECCCCceeEEeecCCCCC--cEEEEEEccCCCEEEEEecC------CeEEEEeCCCCcee
Q 012699          276 WNMKTWKAMTVLPLGEDPP--AITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQI  328 (458)
Q Consensus       276 ~d~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~  328 (458)
                      +|+.+.+-.........+.  .-..++.. ..++++.++.+      +.+.++|+.+.+..
T Consensus       195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~  254 (482)
T KOG0379|consen  195 YDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLSTWEWK  254 (482)
T ss_pred             eccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeecccceee
Confidence            9998876444332222111  12223322 35566666665      25777888774433

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=86.72  E-value=31  Score=33.23  Aligned_cols=261  Identities=12%  Similarity=0.141  Sum_probs=113.3

Q ss_pred             cCCCceeeeeecCcceEEeccccccccccceeeee-ccCCceeeeeCCccceeEeeccCCCcccccccccccCCccccee
Q 012699           34 QTKNSTLASGVNEESLLLSTNSSEACATTATHMGS-AEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQ  112 (458)
Q Consensus        34 s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~  112 (458)
                      ..++..++-+..+|.+....+......-.+..++. .+-..-+.....+ +.+++.|+.-|.-.+..+..          
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs~~gds~l~~~~~----------  287 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG-GDYLFVGSEFGDSQLLQISL----------  287 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT---EEEEEESSS-EEEEEEES----------
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEEecCCcEEEEEeC----------
Confidence            66777788888899888877665442101222222 2222223333333 45777777665555544431          


Q ss_pred             eeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC----CC------EEEEEe---CCCcEEEEecCCC
Q 012699          113 MFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS----GN------NIASAS---VDGTVRIWTYDSS  179 (458)
Q Consensus       113 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~------~l~s~~---~dg~v~iwd~~~~  179 (458)
                                            ..++.+..+. .-+||..+++.+.    ..      .|++++   .+|.+++..-.-+
T Consensus       288 ----------------------~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~  344 (504)
T PF10433_consen  288 ----------------------SNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIG  344 (504)
T ss_dssp             ----------------------ESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBE
T ss_pred             ----------------------CCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCC
Confidence                                  0111222232 3466777766421    11      455543   5678888642111


Q ss_pred             CCCCcccccc--CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---CCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          180 TPASRNATIY--CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       180 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      -.........  .-..++.+.....+..+++.+..+ .-+++.+.   ..+.+......         .|..+.+.++++
T Consensus       345 ~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~---------~f~~~~~Tl~~~  414 (504)
T PF10433_consen  345 IEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED---------GFDTDEPTLAAG  414 (504)
T ss_dssp             EE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE------------TS-SSS-EEEEE
T ss_pred             ceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc---------cCCCCCCCeEEE
Confidence            0000111111  122344444332224566665554 34455543   22222111100         122223333332


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--  332 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--  332 (458)
                      .-.    ...+...-...|++.+....+........ ....|.+.+.+  +.+++.+..++.+..+.+..........  
T Consensus       415 ~~~----~~~ivQVt~~~i~l~~~~~~~~~~~w~~~-~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~  487 (504)
T PF10433_consen  415 NVG----DGRIVQVTPKGIRLIDLEDGKLTQEWKPP-AGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDE  487 (504)
T ss_dssp             EET----TTEEEEEESSEEEEEESSSTSEEEEEE-T-TS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred             EcC----CCeEEEEecCeEEEEECCCCeEEEEEeCC-CCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecc
Confidence            221    00111111137899998877777665443 33446555554  4567777778899999887655432222  


Q ss_pred             ---CCCCCeEEEEEcC
Q 012699          333 ---AHDSAISSILFGP  345 (458)
Q Consensus       333 ---~~~~~v~~~~~~~  345 (458)
                         .....|.|+...|
T Consensus       488 ~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  488 TILELDNEISCLSIEP  503 (504)
T ss_dssp             --EE-SS-EEEEE---
T ss_pred             ccccCCCceEEEEeCC
Confidence               1467788888766

...

>PRK05560 DNA gyrase subunit A; Validated

Probab=86.63  E-value=41  Score=34.54  Aligned_cols=243  Identities=11%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             CCCeEEEEEcCCCcEEEEEc-------CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699          202 KSDRLLLIGTADGGIKAWNV-------DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  274 (458)
                      ++...++.-+.+|.|+--.+       ..+.-...+...........+..+.....++..+..+             .++
T Consensus       496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Gr-------------v~~  562 (805)
T PRK05560        496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGR-------------VYR  562 (805)
T ss_pred             CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCe-------------EEE


Q ss_pred             E--EECCCCc-------eeEEeecCCCCCcEEEEEEc--cCCCEEEEEecCCeEEEEeC-------CCCceeeeeeCCCC
Q 012699          275 V--WNMKTWK-------AMTVLPLGEDPPAITSLCFN--HNGKILAASAVDGMIHMFDM-------SAGLQITGWPAHDS  336 (458)
Q Consensus       275 i--~d~~~~~-------~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~v~d~-------~~~~~~~~~~~~~~  336 (458)
                      +  +++....       ....+.+.....-+..+.+.  ++..+++..+.+|.++--++       +.+.....+. -.+
T Consensus       563 l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLk-e~D  641 (805)
T PRK05560        563 LKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLD-EGD  641 (805)
T ss_pred             EEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccC-CCC


Q ss_pred             CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .+..+........++..+..|.+..+.+..-....................-+..+.+.++..+++..+..|.++...+.
T Consensus       642 ~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~  721 (805)
T PRK05560        642 ELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVS  721 (805)
T ss_pred             EEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH


Q ss_pred             ---------CCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          417 ---------GHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       417 ---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                               .+.....+....+.+..+........++..+.+|.+..++++
T Consensus       722 e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~  772 (805)
T PRK05560        722 EYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS  772 (805)
T ss_pred             HhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.49  E-value=3.4  Score=22.95  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=19.3

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEe-CC--CcEEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASAS-VD--GTVRIW  174 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~-~d--g~v~iw  174 (458)
                      ...+.-....|+|||+.|+-++ .+  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455677889999999876654 34  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PLN02153 epithiospecifier protein

Probab=86.07  E-value=26  Score=31.67  Aligned_cols=116  Identities=9%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             CCeEEEEEcCC-------CcEEEEEcCCCceeeeccCCCCCC-ce-eeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          203 SDRLLLIGTAD-------GGIKAWNVDAKRVVCDLNTTDAFP-SV-LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       203 ~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      ++.+++.|+.+       ..+.+||+.+.+-........... .. ......-++.+++.++.+...        ....+
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--------~~~~v  103 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--------EFSDF  103 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--------ccCcE
Confidence            34555555542       257788887765432211111000 00 111122245566666654211        01368


Q ss_pred             EEEECCCCceeEEeecC----CCCCcEEEEEEccCCCEEEEEecC-----------CeEEEEeCCCCce
Q 012699          274 TVWNMKTWKAMTVLPLG----EDPPAITSLCFNHNGKILAASAVD-----------GMIHMFDMSAGLQ  327 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~  327 (458)
                      .+||+.+.+-...-.+.    .....-.+++ .-+++.++.|+.+           ..+.+||..+.+-
T Consensus       104 ~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W  171 (341)
T PLN02153        104 YSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW  171 (341)
T ss_pred             EEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence            88998875543321111    1111112222 2345666666643           2477889876543

>PLN02153 epithiospecifier protein

Probab=85.54  E-value=27  Score=31.50  Aligned_cols=123  Identities=14%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             CCeEEEEEcCC-----CcEEEEEcCCCceeeeccCCC---CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699          203 SDRLLLIGTAD-----GGIKAWNVDAKRVVCDLNTTD---AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT  274 (458)
Q Consensus       203 ~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  274 (458)
                      ++.+++.|+.+     ..+.+||+.+.+-...-....   ........+..-++++++.++.+......  .......+.
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~v~  162 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK--TPERFRTIE  162 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC--CCcccceEE
Confidence            56677777753     257789988766433211100   11112222233445666666654210000  000013678


Q ss_pred             EEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEecC-------------CeEEEEeCCCCcee
Q 012699          275 VWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAVD-------------GMIHMFDMSAGLQI  328 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~v~d~~~~~~~  328 (458)
                      +||+++.+-...-....  ....-.+++. -++++++.|+.+             ..+.+||+.+.+..
T Consensus       163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        163 AYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             EEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            89988755433211110  1111112222 255555555432             35888998876543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.53  E-value=30  Score=31.84  Aligned_cols=241  Identities=7%  Similarity=-0.008  Sum_probs=0.0

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----------cEEEEEcCCCceeee
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-----------GIKAWNVDAKRVVCD  229 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~~wd~~~~~~~~~  229 (458)
                      +++.|..+..+.++|+................+-........++.+.+.|+.+.           .+..||..+++....
T Consensus        42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~  121 (376)
T PRK14131         42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL  121 (376)
T ss_pred             EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeC


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecc---------------------------------------cCCCCcceeeccc
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAAS---------------------------------------RRYGSSNIYSWGF  270 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~  270 (458)
                      -........-......-++.+.+.|+.+                                       .            
T Consensus       122 ~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------  189 (376)
T PRK14131        122 DTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNK------------  189 (376)
T ss_pred             CCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCc------------


Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE-----ecCCeEEEEeC----CCCceeeeeeC------CC
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS-----AVDGMIHMFDM----SAGLQITGWPA------HD  335 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~v~d~----~~~~~~~~~~~------~~  335 (458)
                       .+.+||..+.+-...-.+......-.+++...+.-+++-|     .....++.+++    .....+..++.      +.
T Consensus       190 -~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~  268 (376)
T PRK14131        190 -EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE  268 (376)
T ss_pred             -eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC


Q ss_pred             CCeEEEEEcCCCCEEEEecCC----------------------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          336 SAISSILFGPDETSIFSLGSD----------------------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       336 ~~v~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                      ......+...++++++.|+.+                      ..+.+||..+.       .................+.
T Consensus       269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-------~W~~~~~lp~~r~~~~av~  341 (376)
T PRK14131        269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG-------KWQKVGELPQGLAYGVSVS  341 (376)
T ss_pred             ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC-------cccccCcCCCCccceEEEE


Q ss_pred             EccCCCEEEEEeCCc------cEEEEEccCCCcccc
Q 012699          394 LDVNGRRLLVTSGSV------RAPIYQVRGHASGMR  423 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~------~i~i~~~~~~~~~~~  423 (458)
                      +  ++++++.|+...      .|..+..+.......
T Consensus       342 ~--~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~~  375 (376)
T PRK14131        342 W--NNGVLLIGGETAGGKAVSDVTLLSWDGKKLTVE  375 (376)
T ss_pred             e--CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEEe

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=85.52  E-value=45  Score=34.00  Aligned_cols=69  Identities=9%  Similarity=-0.069  Sum_probs=51.7

Q ss_pred             CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc----C---------------CCCCcEEEEEECCCCCeEEE
Q 012699          385 SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT----L---------------PHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       385 ~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~----~---------------~h~~~v~~~~~~~~~~~l~s  445 (458)
                      ....|.++....-+.+++.+..||+|.++|-.+.+.+...    .               ++...+..++|||.+..++.
T Consensus       258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~  337 (753)
T PF11635_consen  258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ  337 (753)
T ss_pred             cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence            3456777888888889999999999999998776443332    1               12234556899999999998


Q ss_pred             ecCCCcEE
Q 012699          446 GSADHSVQ  453 (458)
Q Consensus       446 ~~~dg~v~  453 (458)
                      -..||.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=84.58  E-value=52  Score=33.82  Aligned_cols=160  Identities=7%  Similarity=0.021  Sum_probs=78.7

Q ss_pred             cEEEEEEc--cCCCEEEEEecCCeEEEEeCCCCc-------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          295 AITSLCFN--HNGKILAASAVDGMIHMFDMSAGL-------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       295 ~i~~~~~~--~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      -+.++...  .+..+++..+.+|.++-.++..-.       ....+.. .+.+..+........++..+..|.+..+.+.
T Consensus       590 Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~  668 (800)
T TIGR01063       590 ITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEE  668 (800)
T ss_pred             EEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhh
Confidence            34455543  245678888999999988765421       1122233 3344444443444566667777877666654


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-------c--cccCCCCCcEEEEEE
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-------G--MRTLPHGAAITTVDW  436 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-------~--~~~~~h~~~v~~~~~  436 (458)
                      .-...-........... .....|..+..-.+...++..+..|.++...+..-..       .  ..+....+.+..+..
T Consensus       669 eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~  747 (800)
T TIGR01063       669 DVRPMGRAARGVRGIKL-KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIA  747 (800)
T ss_pred             hcCCcCCCCCCeecccC-CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEE
Confidence            32111000000011111 1223344444444556788888888877776542211       1  111122234444433


Q ss_pred             CCCCCeEEEecCCCcEEEEe
Q 012699          437 HPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       437 ~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ..+...++..+.+|.+..+.
T Consensus       748 v~~~~~v~liT~~G~~lrf~  767 (800)
T TIGR01063       748 VDDDDELMLITSAGKLIRTS  767 (800)
T ss_pred             ecCCCeEEEEecCCeEEEee
Confidence            33334455556677665554

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=83.99  E-value=34  Score=31.25  Aligned_cols=170  Identities=8%  Similarity=-0.037  Sum_probs=84.8

Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC--CCCE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP--DETS  349 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~  349 (458)
                      .+.++|-. ....-.++.-+...+|.++.|..|--++++=-.-.-+.+.|+.+.+.-+.+-.-.-+=.+--.+|  .+..
T Consensus       407 ~vYilDe~-lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~  485 (603)
T COG4880         407 AVYILDEN-LNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL  485 (603)
T ss_pred             eeEEEcCC-CcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence            44454432 23333443334446788888887766777765555688888877544332211111112223455  4556


Q ss_pred             EEEecCCCe--EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE-EeCCccEEEEEccCCCcccccCC
Q 012699          350 IFSLGSDGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV-TSGSVRAPIYQVRGHASGMRTLP  426 (458)
Q Consensus       350 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~~i~i~~~~~~~~~~~~~~  426 (458)
                      |-.|..+|.  |.++|+.+...+..........--...-..-+++.|.|.-..++. +...|.  |+.++.+.++.....
T Consensus       486 lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~~e  563 (603)
T COG4880         486 LGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKRAE  563 (603)
T ss_pred             EEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCceeeehhh
Confidence            777777776  567888765443321110000000000011233445555444433 333343  566665555555556


Q ss_pred             CCCcEEEEEECCCCCeEE
Q 012699          427 HGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       427 h~~~v~~~~~~~~~~~l~  444 (458)
                      |...+...-|..|--+++
T Consensus       564 ~k~na~RA~fi~dylY~v  581 (603)
T COG4880         564 RKLNADRAFFIKDYLYLV  581 (603)
T ss_pred             hcccceeeEEecceEEEe
Confidence            776666666665533333

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.93  E-value=26  Score=30.45  Aligned_cols=116  Identities=9%  Similarity=0.082  Sum_probs=63.6

Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec------CCCeEEEEeccCCCeeEEeecCCcccC-C-CCCC
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG------SDGKIIEWSLQNQGQVLWTRNCSRFCD-P-ESSK  386 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~  386 (458)
                      ..|++||..+.+...--.+-.+.|+.+.|..+.+.++.|.      ....+..||+.+..-.       .+.. . ....
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-------~~~~~~s~~ip   88 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-------SLGGGSSNSIP   88 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-------ecCCcccccCC
Confidence            3589999887666554445567899999986666666553      3556889998865211       1111 0 2234


Q ss_pred             CceeEEEEcc-CC-CEEEEEe-CCcc--EEEEEccCCCcccc-cCCCCCcEEEEEEC
Q 012699          387 SCRHEMALDV-NG-RRLLVTS-GSVR--APIYQVRGHASGMR-TLPHGAAITTVDWH  437 (458)
Q Consensus       387 ~~v~~~~~s~-~g-~~l~~~~-~~~~--i~i~~~~~~~~~~~-~~~h~~~v~~~~~~  437 (458)
                      .++..+.+.. |+ ++.+.|. .++.  +..||-.....+.. .......|.++.+-
T Consensus        89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~  145 (281)
T PF12768_consen   89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL  145 (281)
T ss_pred             CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence            5677776643 33 3444443 3333  55554433322222 22233456665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	458
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-11
2h9l_A	329	Wdr5delta23 Length = 329		5e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-06
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-04
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-04

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 14  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 68
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 69  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 125
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 126 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 170
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 229
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 230 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 285 VISTACHPT 293

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 14  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 68
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 69  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 125
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 126 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 170
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 229
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 230 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 285 VISTACHPT 293

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 28  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 82
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 83  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 139
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 140 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 184
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 243
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 244 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 299 VISTACHPT 307

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 16  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 70
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 71  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 127
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 128 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 172
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 231
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 232 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 287 VISTACHPT 295

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 17  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 71
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 72  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 128
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 129 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 173
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 232
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 233 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 288 VISTACHPT 296

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 17  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 71
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 72  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 128
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 129 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 173
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 232
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 233 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 288 VISTACHPT 296

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 10  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 64
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 65  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 121
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 122 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 166
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 167 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 225
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 226 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 280
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 281 VISTACHPT 289

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 17  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 71
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 72  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 128
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 129 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 173
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 232
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 233 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 288 VISTACHPT 296

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 12  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 66
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 67  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 123
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 124 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 168
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 227
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 228 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 283 VISTACHPT 291

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 11  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 65
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 66  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 122
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 123 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 167
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 226
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 227 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 282 VISTACHPT 290

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 11  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 65
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 66  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 122
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 123 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 167
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 226
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 227 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 282 VISTACHPT 290

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 7   PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 61
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 62  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 118
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 119 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 163
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 222
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 223 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 278 VISTACHPT 286

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 33  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 87
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 88  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 144
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 145 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 189
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 248
Query: 371 LWT 373
           L T
Sbjct: 249 LKT 251

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +      
Sbjct: 35  PNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---K 89
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 90  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 146
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 147 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 191
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 250
Query: 371 LWT 373
           L T
Sbjct: 251 LKT 253

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 132/309 (42%), Gaps = 31/309 (10%)
Query: 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCG 191
           P   + F  T  GHT  +S  +FS +G  +A++S D  ++IW  YD     + +      
Sbjct: 14  PNYALKF--TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH---K 68
Query: 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251
             I  + W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + 
Sbjct: 69  LGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLI 125
Query: 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311
           VS +                S+ +W++KT K +  LP   DP  ++++ FN +G ++ +S
Sbjct: 126 VSGSFDE-------------SVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSS 170
Query: 312 AVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
           + DG+  ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ 
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKC 229
Query: 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430
           L T     +   ++ K C         G+ ++  S      I+ ++      +   H   
Sbjct: 230 LKT-----YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 431 ITTVDWHPT 439
           + +   HPT
Sbjct: 285 VISTACHPT 293

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCGTEIMSL 197
            + T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +        I  +
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDV 74
Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
            W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + VS +  
Sbjct: 75  AWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGSFD 131
Query: 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317
                         S+ +W++KT   +  LP   DP  ++++ FN +G ++ +S+ DG+ 
Sbjct: 132 E-------------SVRIWDVKTGMCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYDGLC 176
Query: 318 HMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
            ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ L T   
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY-SKGKCLKT--- 232
Query: 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436
             +   ++ K C         G+ ++  S      I+ ++      +   H   + +   
Sbjct: 233 --YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 437 HPT 439
           HPT
Sbjct: 291 HPT 293

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW-TYDSSTPASRNATIYCGTEIMSL 197
            + T  GHT  +S  +FS +G  +AS+S D  ++IW  YD     + +        I  +
Sbjct: 18  LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDV 74
Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
            W   S+ LL+  + D  +K W+V + + +  L     +  V     +P   + VS +  
Sbjct: 75  AWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGSFD 131
Query: 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317
                         S+ +W++KT   +  LP   DP  ++++ FN +G ++ +S+ DG+ 
Sbjct: 132 E-------------SVRIWDVKTGMCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYDGLC 176
Query: 318 HMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
            ++D ++G  +      D+  +S + F P+   I +   D  +  W   ++G+ L T   
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY-SKGKCLKT--- 232
Query: 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436
             +   ++ K C         G+ ++  S      I+ ++      +   H   + +   
Sbjct: 233 --YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 437 HPT 439
           HPT
Sbjct: 291 HPT 293

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 41/255 (16%)
Query: 119 YTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
           ++ +G+      D   VK+       L+T  GH+S +    FS  G  IASAS D TV++
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 174 WTYDSSTPASRNATIYCG-TEIMSLEWECK---SDRLLLIGTADGGIKAWNVDAKRVVCD 229
           W        +RN  +    T   S  W       D+ +   + D  +K WN + + +   
Sbjct: 412 W--------NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQT- 462
Query: 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289
              T    SV  +  SP      SA+  +             ++ +WN        +  L
Sbjct: 463 --LTGHSSSVRGVAFSPDGQTIASASDDK-------------TVKLWNR---NGQLLQTL 504
Query: 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDE 347
                ++  + F+ +G+ +A+++ D  + +++ +  L   +TG   H S++  + F PD 
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAFSPDG 561
Query: 348 TSIFSLGSDGKIIEW 362
            +I S  SD  +  W
Sbjct: 562 QTIASASSDKTVKLW 576

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/348 (21%), Positives = 139/348 (39%), Gaps = 54/348 (15%)
Query: 119 YTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
           ++ +G+      D   VK+       L+T  GH+S +    FS  G  IASAS D TV++
Sbjct: 65  FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 174 WTYDSSTPASRNATIYCG-TEIMSLEWECK---SDRLLLIGTADGGIKAWNVDAKRVVCD 229
           W        +RN  +    T   S  W        + +   + D  +K WN + + +   
Sbjct: 125 W--------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT- 175
Query: 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289
              T    SV  +  SP      SA+  +             ++ +WN        +  L
Sbjct: 176 --LTGHSSSVWGVAFSPDGQTIASASDDK-------------TVKLWNR---NGQLLQTL 217
Query: 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDE 347
                ++  + F+ +G+ +A+++ D  + +++ +  L   +TG   H S+++ + F PD 
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVNGVAFRPDG 274
Query: 348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS 407
            +I S  SD K ++         LW RN           S    +A   +G+ +   S  
Sbjct: 275 QTIAS-ASDDKTVK---------LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 408 VRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQV 454
               ++   G    ++TL  H +++  V + P      + S D +V++
Sbjct: 325 KTVKLWNRNGQH--LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
           F D  Y   G D +    +  +   FL    GH   +   +++  G  + S S D TVR+
Sbjct: 130 FEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRV 187
Query: 174 WTYD----SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229
           W       +      N+T+ C   +     E K+ + ++ G+ D  +  W +  +  V D
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 230 LNTTDAFPSVLDLKCSPVE-PIFVS------AAASRRYGSSNIYSWGFA--SLTVWNMKT 280
                 +P V     +P E P FV       A+     G  NI   G    +L VW++  
Sbjct: 243 HGEEHDYPLVFH---TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISS 340
            K + +L    D   I S  ++H  K   ++++D  I ++D+  G  +     H + +  
Sbjct: 300 MKCLYILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG- 356
Query: 341 ILFGPDETSIFSLGSDGKIIEW 362
            L    +  + S  +DG I  W
Sbjct: 357 -LLRLSDKFLVSAAADGSIRGW 377

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 27/262 (10%)
Query: 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173
           F D  Y   G D +    +  +   FL    GH   +   +++  G  + S S D TVR+
Sbjct: 130 FEDN-YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRV 187
Query: 174 WTYD----SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229
           W       +      N+T+ C  +I+    E K+ + ++ G+ D  +  W +  +  V D
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRC-LDIV----EYKNIKYIVTGSRDNTLHVWKLPKESSVPD 242
Query: 230 LNTTDAFPSVLDLKCSPVE-PIFV------SAAASRRYGSSNIYSWGFA--SLTVWNMKT 280
                 +P V     +P E P FV       A+     G  NI   G    +L VW++  
Sbjct: 243 HGEEHDYPLVFH---TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISS 340
            K + +L    D   I S  ++H  K   +++ D  I ++D+  G        H + +  
Sbjct: 300 XKCLYILSGHTD--RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVG- 356
Query: 341 ILFGPDETSIFSLGSDGKIIEW 362
            L    +  + S  +DG I  W
Sbjct: 357 -LLRLSDKFLVSAAADGSIRGW 377

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           L   +GH + + C ++   G  + S + D  V++W  D  T    +        + SL++
Sbjct: 232 LHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVW--DPETETCLHTLQGHTNRVYSLQF 287
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           +      ++ G+ D  I+ W+V+    +  L    +  S ++LK    + I VS  A   
Sbjct: 288 DGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSGNAD-- 338
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLCFNHNGKILAASAVDGMIH 318
                      +++ +W++KT + +  L    +   A+T L FN N   +  S+ DG + 
Sbjct: 339 -----------STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVK 385
Query: 319 MFDMSAG 325
           ++D+  G
Sbjct: 386 LWDLKTG 392

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS 355
           I S+ ++ +GK LA+ A+DG+I++FD++ G  +     H   I S+ F PD   + +   
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 356 DGKIIEWSLQN-------QGQVLWTRNCSRFC 380
           DG I  + +Q+        G   W  N + FC
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVA-FC 257

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 65/267 (24%)
Query: 134 EVKVDFLETFLGHTSPISCCRFSSSGNNIASAS---------VDGTVRIWTYDSS----- 179
           E+ V+ L   L HTS + C +FS+ G  +A+            DG++     D S     
Sbjct: 52  EIDVE-LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 110
Query: 180 -----TPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC------ 228
                T +S ++ +Y  +   S +      + L  G  D  I+ W+++ +++V       
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPD-----GKFLATGAEDRLIRIWDIENRKIVMILQGHE 165
Query: 229 -DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL 287
            D+ + D FPS   L         VS +  R             ++ +W+++T +    L
Sbjct: 166 QDIYSLDYFPSGDKL---------VSGSGDR-------------TVRIWDLRTGQCSLTL 203
Query: 288 PLGEDPPAITSLCFN-HNGKILAASAVDGMIHMFDMSAGLQITGWPA-------HDSAIS 339
            + ED   +T++  +  +GK +AA ++D  + ++D   G  +    +       H  ++ 
Sbjct: 204 SI-ED--GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260
Query: 340 SILFGPDETSIFSLGSDGKIIEWSLQN 366
           S++F  D  S+ S   D  +  W+LQN
Sbjct: 261 SVVFTRDGQSVVSGSLDRSVKLWNLQN 287

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)
Query: 139 FLETFLGHTSPISCCRFSSSGNN--IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
            + T+  H+  ++CC F++  N+  +A+ S D  +++W  D +    RN T++  T  ++
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--DLNQKECRN-TMFGHTNSVN 747
Query: 197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
                  D LL   +ADG ++ W+V +      +N    F S  D    P +   +    
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED---PPEDVEVIVKCC 804
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
           S       I       + ++++ T   +  +  G     I    F+    +   +     
Sbjct: 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYC 863
Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
           + ++++ + L++     H S +  ++F PD +S  +   D  I  W 
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336
           N KT K ++ L +     A+   CF+ +G+ +A+   D  + +F    G ++    AH+ 
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 658
Query: 337 AISSILFGPDETSIFSLGSDGKIIEW 362
            +    F  D++ I +  +D K+  W
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIW 684

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 14/218 (6%)
Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI--YCGTEIMSLEWECK 202
           GH  P++  +++  G+ + S S D +  +W    S    R  T+  + GT I S++ +C 
Sbjct: 30  GHERPLTQVKYNKEGDLLFSCSKDSSASVWY---SLNGERLGTLDGHTGT-IWSIDVDCF 85
Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS--RRY 260
           + +  + G+AD  IK W+V   + V    T  +   V  ++ SP    F++   +  +  
Sbjct: 86  T-KYCVTGSADYSIKLWDVSNGQCVA---TWKSPVPVKRVEFSPCGNYFLAILDNVMKNP 141
Query: 261 GSSNIYSWGFASLTVWNMK-TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
           GS NIY     S T    K + + +  +   E   A T   ++  GK + A   DG I  
Sbjct: 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201
Query: 320 FDMSAGLQ-ITGWPAHDSAISSILFGPDETSIFSLGSD 356
           +D+S   + +     H+ +IS + F PD T   +   D
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%)
Query: 139 FLETFLGHTSPISCCRFSSSGNN--IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
            + T+  H+  ++CC F++  N+  +A+ S D  +++W  D +    RN T++  T  ++
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW--DLNQKECRN-TMFGHTNSVN 754
Query: 197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
                  D LL   +ADG ++ W+V +      +N    F S  D    P +   +    
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED---PPEDVEVIVKCC 811
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
           S       I       + ++++ T   +  +  G     I    F+    +   +     
Sbjct: 812 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYC 870
Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
           + ++++ + L++     H S +  ++F PD +S  +   D  I  W 
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336
           N KT K ++ L +     A+   CF+ +G+ +A+   D  + +F    G ++    AH+ 
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 665
Query: 337 AISSILFGPDETSIFSLGSDGKIIEW 362
            +    F  D++ I +  +D K+  W
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIW 691

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           + +F GH+  +  C  ++ G    SAS D T+R+W  D +T  +    +   +++MS++ 
Sbjct: 52  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 109
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           + K+  +++ G+ D  IK W +  + +   L   D    V   +  P E     +     
Sbjct: 110 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 165
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
            G+  +       +  WN+  ++      +G +   I +L  + +G ++A++  DG I +
Sbjct: 166 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 216
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
           ++++A   +    A D  + S+ F P+ 
Sbjct: 217 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 243

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           + +F GH+  +  C  ++ G    SAS D T+R+W  D +T  +    +   +++MS++ 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           + K+  +++ G+ D  IK W +  + +   L   D    V   +  P E     +     
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
            G+  +       +  WN+  ++      +G +   I +L  + +G ++A++  DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
           ++++A   +    A D  + S+ F P+ 
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           + +F GH+  +  C  ++ G    SAS D T+R+W  D +T  +    +   +++MS++ 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           + K+  +++ G+ D  IK W +  + +   L   D    V   +  P E     +     
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
            G+  +       +  WN+  ++      +G +   I +L  + +G ++A++  DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
           ++++A   +    A D  + S+ F P+ 
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           + +F GH+  +  C  ++ G    SAS D T+R+W  D +T  +    +   +++MS++ 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           + K+  +++ G+ D  IK W +  + +   L   D    V   +  P E     +     
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
            G+  +       +  WN+  ++      +G +   I +L  + +G ++A++  DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
           ++++A   +    A D  + S+ F P+ 
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           + +F GH+  +  C  ++ G    SAS D T+R+W  D +T  +    +   +++MS++ 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW--DVATGETYQRFVGHKSDVMSVDI 115
Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           + K+  +++ G+ D  IK W +  + +   L   D    V   +  P E     +     
Sbjct: 116 DKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV---RVVPNEKADDDSVTIIS 171
Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
            G+  +       +  WN+  ++      +G +   I +L  + +G ++A++  DG I +
Sbjct: 172 AGNDKM-------VKAWNLNQFQIEADF-IGHNSN-INTLTASPDGTLIASAGKDGEIML 222
Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDE 347
           ++++A   +    A D  + S+ F P+ 
Sbjct: 223 WNLAAKKAMYTLSAQDE-VFSLAFSPNR 249

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330
           A++ VW+ +T      L    D  ++  + F+H+GK+LA+ + D  I ++D      I  
Sbjct: 130 ATIKVWDYETGDFERTLKGHTD--SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 187
Query: 331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365
              HD  +SS+   P+   I S   D  I  W +Q
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
           +TF GH   + C  F+    +  AS  +D TV++W+   STP   N T+  G E  +  +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
           ++    D+  +I  +D   IK W+   K  V  L       +V      P  PI +S + 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
                          +L +WN  T+K    L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 21/248 (8%)
Query: 137 VDFLETFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPASRNAT-------I 188
           ++ +  F  H+S +   +F++  +N+ AS   +G + IW  +  T +  N T       +
Sbjct: 103 INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162
Query: 189 YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE 248
               E++SL W      +     +      W++ AK+ V  L+ T    S +  + S VE
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSP-NSGIKQQLSVVE 221
Query: 249 --PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNHNG 305
             P   +  A+   GS N       S+ +W+++     +  L  G     I SL + H  
Sbjct: 222 WHPKNSTRVATAT-GSDND-----PSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQD 274
Query: 306 K-ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWS 363
           + +L +S  D  + +++  +  Q++ +PA  +      F P+   +F+  S D KI   +
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334
Query: 364 LQNQGQVL 371
           LQN    L
Sbjct: 335 LQNLTNTL 342

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
           +TF GH   + C  F+    +  AS  +D TV++W+   STP   N T+  G E  +  +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
           ++    D+  +I  +D   IK W+   K  V  L       +V      P  PI +S + 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
                          +L +WN  T+K    L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
           +TF GH   + C  F+    +  AS  +D TV++W+   STP   N T+  G E  +  +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
           ++    D+  +I  +D   IK W+   K  V  L       +V      P  PI +S + 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
                          +L +WN  T+K    L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTE--IMSL 197
           +TF GH   + C  F+    +  AS  +D TV++W+   STP   N T+  G E  +  +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYV 190
Query: 198 EWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256
           ++    D+  +I  +D   IK W+   K  V  L       +V      P  PI +S + 
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSE 248
Query: 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290
                          +L +WN  T+K    L +G
Sbjct: 249 D-------------GTLKIWNSSTYKVEKTLNVG 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.63
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.62
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.44
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.37
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.36
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.32
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.3
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.21
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.19
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.17
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.05
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.03
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.03
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.0
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.99
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.95
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.93
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.91
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.9
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.87
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.83
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.82
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.8
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.63
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.57
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.57
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.55
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.54
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.5
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.42
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.4
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.39
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.33
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.2
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.19
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.13
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.1
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.08
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.05
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.87
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.73
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.69
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.62
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.59
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.59
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.53
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.51
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.46
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.46
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.43
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.32
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.3
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.15
3ott_A	758	Two-component system sensor histidine kinase; beta	97.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.06
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.93
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.87
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.77
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.42
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.31
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.27
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.88
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.84
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.81
3ott_A	758	Two-component system sensor histidine kinase; beta	95.79
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.42
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.19
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	92.94
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.13
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.62
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.5
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.29
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	90.63
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.66
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	89.09
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	86.81
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	85.05
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	84.24
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	81.77
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	81.05
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.68

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.4e-58  Score=444.59  Aligned_cols=419  Identities=15%  Similarity=0.174  Sum_probs=321.7

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCC--
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGN--   92 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--   92 (458)
                      +..+.|.+|...|++++| +|||++||||+.|++++|||...+.....  ..-....+....+.++++++++++++.+  
T Consensus        50 ~~~~~~~~h~~~v~~~~~-spdg~~lasg~~d~~v~lWd~~~~~~~~~--~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHILK--TTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             SCCEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEESSSTTCCEE--EEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             ccCeEecCCCCceEEEEE-CCCCcEEEEEeCCCCEEEeECCCCcceee--EeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            356788999999999999 99999999999999999999865432100  0000112233445566666677766654  


Q ss_pred             --CcccccccccccCCcccceeeeccCCCCcCCCc-ceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699           93 --DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRD-AQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNIA  163 (458)
Q Consensus        93 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~  163 (458)
                        +.+.+|+..................+|+|++.. +++++.++.+++      +....+.+|.+.|++++|+|++++|+
T Consensus       127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence              478888854322222222334456779999974 899999988887      45678899999999999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccc-----cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC------
Q 012699          164 SASVDGTVRIWTYDSSTPASRNA-----TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT------  232 (458)
Q Consensus       164 s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------  232 (458)
                      +|+.|++|++||+.+++......     ...|...|.+++|+ +++++|++++.|++|++||+.+++....+..      
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            99999999999998776542211     11577899999999 7889999999999999999998876554321      


Q ss_pred             -----------------------------------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          233 -----------------------------------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       233 -----------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                                                         ..|...|.+++|+|+++.+++++.|+             .|++||
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~-------------~v~~Wd  352 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG-------------HINSWD  352 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEE
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC-------------cEEEEE
Confidence                                               13446799999999999999999874             555555


Q ss_pred             CCCCceeEEe-------------------------------------------------------ec--C----------
Q 012699          278 MKTWKAMTVL-------------------------------------------------------PL--G----------  290 (458)
Q Consensus       278 ~~~~~~~~~~-------------------------------------------------------~~--~----------  290 (458)
                      +.+++....+                                                       .+  .          
T Consensus       353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~  432 (611)
T 1nr0_A          353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK  432 (611)
T ss_dssp             TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred             CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence            5443221110                                                       00  0          


Q ss_pred             -------------CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCCEEEEecC
Q 012699          291 -------------EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       291 -------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~  355 (458)
                                   .+...+.+++|+|+|++|++|+.|+.|++||+.++..  +.. .+|...|++++|+|++++|++++.
T Consensus       433 ~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~  511 (611)
T 1nr0_A          433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQ  511 (611)
T ss_dssp             EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcC
Confidence                         1234578999999999999999999999999987643  233 679999999999999999999999


Q ss_pred             CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc--cccCCC-CCcEE
Q 012699          356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG--MRTLPH-GAAIT  432 (458)
Q Consensus       356 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~~h-~~~v~  432 (458)
                      |++|++||+.+.....      .......|...|.+++|+|||++|++++.|++|++|++......  ....+| ...|+
T Consensus       512 d~~v~~w~~~~~~~~~------~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~  585 (611)
T 1nr0_A          512 SRKVIPYSVANNFELA------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN  585 (611)
T ss_dssp             TSCEEEEEGGGTTEES------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred             CCCEEEEEcCCCCcee------eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCee
Confidence            9999999998733321      11112247889999999999999999999999999999876533  344589 89999


Q ss_pred             EEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          433 TVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +++|+|+++ |++++.|++|++|+++
T Consensus       586 ~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          586 SVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             EEEEcCCCE-EEEecCCCCEEEEecc
Confidence            999999998 9999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.5e-56  Score=429.21  Aligned_cols=408  Identities=19%  Similarity=0.172  Sum_probs=320.3

Q ss_pred             ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccc-eeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTA-THMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      ...+...+.+++| +|||++||+++ ++++++|+...+.....+ .|.     ....+++++++++++++++.|+++++|
T Consensus        14 ~~~~~g~~~~~~~-spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~-----~~v~~~~~spdg~~lasg~~d~~v~lW   86 (611)
T 1nr0_A           14 PRTARGTAVVLGN-TPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS-----HQTTVAKTSPSGYYCASGDVHGNVRIW   86 (611)
T ss_dssp             CCCCTTCCCCCEE-CTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS-----SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCcccCceeEEee-CCCCCEEEeCC-CCEEEEecCCCcccCeEecCCC-----CceEEEEECCCCcEEEEEeCCCCEEEe
Confidence            3456777899999 99999999998 579999999765444222 222     234458888889999999999999999


Q ss_pred             ccccccCCcccce----eeeccCCCCcCCCcceeccCCC----eeee----eeeeeeccCCCCeEEEEeCCCCC-EEEEE
Q 012699           99 KLEFEDVGAGDII----QMFNDGLYTENGRDAQGEEDFP----EVKV----DFLETFLGHTSPISCCRFSSSGN-NIASA  165 (458)
Q Consensus        99 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~----~~~~----~~~~~~~~h~~~v~~~~~~~~~~-~l~s~  165 (458)
                      ++...........    ......+|+|+|+.++++..+.    .+.+    .....+.+|.+.|++++|+|+++ .|++|
T Consensus        87 d~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~  166 (611)
T 1nr0_A           87 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG  166 (611)
T ss_dssp             ESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             ECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence            9864321111111    2235668999999998876543    3333    34567889999999999999987 59999


Q ss_pred             eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC-----CCCCcee
Q 012699          166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT-----DAFPSVL  240 (458)
Q Consensus       166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-----~~~~~v~  240 (458)
                      +.|++|++||..+.+...  ....|...|.+++|+ +++++|++++.|++|++||+.+++....+...     .|...|.
T Consensus       167 s~D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          167 SDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             ETTSCEEEEETTTBEEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             eCCCeEEEEECCCCeEee--eeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence            999999999987654432  344577899999999 68899999999999999999999888776421     3457899


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--------------------------------
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP--------------------------------  288 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~--------------------------------  288 (458)
                      +++|+|++..+++++.|+             .|++||+++++....+.                                
T Consensus       244 ~v~~spdg~~l~s~s~D~-------------~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~  310 (611)
T 1nr0_A          244 GLTWSPDGTKIASASADK-------------TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  310 (611)
T ss_dssp             EEEECTTSSEEEEEETTS-------------EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             EEEECCCCCEEEEEeCCC-------------eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence            999999999999999884             88888877765544332                                


Q ss_pred             ---------cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee-e--------------------------
Q 012699          289 ---------LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW-P--------------------------  332 (458)
Q Consensus       289 ---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~--------------------------  332 (458)
                               +.+|...|.+++|+|++++|++++.|+.|++||+.+++....+ .                          
T Consensus       311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v  390 (611)
T 1nr0_A          311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL  390 (611)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred             CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCce
Confidence                     2468889999999999999999999999999998765443221 0                          


Q ss_pred             -------------------------------------------------------CCCCCeEEEEEcCCCCEEEEecCCC
Q 012699          333 -------------------------------------------------------AHDSAISSILFGPDETSIFSLGSDG  357 (458)
Q Consensus       333 -------------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg  357 (458)
                                                                             .|...+.+++|+|+|++|++++.|+
T Consensus       391 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~  470 (611)
T 1nr0_A          391 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS  470 (611)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             EEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCC
Confidence                                                                   1234577899999999999999999


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCcccc-cC-CCCCcEEEE
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HASGMR-TL-PHGAAITTV  434 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~~~~-~~-~h~~~v~~~  434 (458)
                      +|++||+.+.......       . ..|...|.+++|+|+|++|++++.|++|++|++.+ .+.... .. +|...|+++
T Consensus       471 ~v~lwd~~~~~~~~~~-------~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v  542 (611)
T 1nr0_A          471 KVHVYKLSGASVSEVK-------T-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV  542 (611)
T ss_dssp             EEEEEEEETTEEEEEE-------E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             eEEEEEccCCceeeee-------c-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE
Confidence            9999999864321110       0 24677899999999999999999999999999987 333222 23 499999999


Q ss_pred             EECCCCCeEEEecCCCcEEEEeCC
Q 012699          435 DWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       435 ~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +|+|++++||+|+.|++|++|+++
T Consensus       543 ~fspdg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          543 SWSPDNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETT
T ss_pred             EECCCCCEEEEEECCCcEEEEECC
Confidence            999999999999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.1e-54  Score=414.43  Aligned_cols=408  Identities=17%  Similarity=0.284  Sum_probs=331.8

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeee----------
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASS----------   78 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~----------   78 (458)
                      +.+++|.+|...|++++| +|||++||+++.|++++|||.......      ..+..++|+|+++.++.+          
T Consensus        48 ~~~~~l~gh~~~V~~l~f-spdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~  126 (577)
T 2ymu_A           48 QLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  126 (577)
T ss_dssp             CEEEEEECCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CEEEEEeCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecc
Confidence            457789999999999999 999999999999999999997543322      345566777776655432          


Q ss_pred             -------------------------------------------------------------CCccceeEeeccCCCcccc
Q 012699           79 -------------------------------------------------------------RPALSRFATNMSGNDSISP   97 (458)
Q Consensus        79 -------------------------------------------------------------~~~~~~~l~~~~~~~~i~~   97 (458)
                                                                                   +.+++.++++++.|+.+++
T Consensus       127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~  206 (577)
T 2ymu_A          127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  206 (577)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             cccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEE
Confidence                                                                         2334567888888999999


Q ss_pred             cccccccCCcc-cceeeeccCCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699           98 SKLEFEDVGAG-DIIQMFNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTV  171 (458)
Q Consensus        98 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  171 (458)
                      |+......... .........+|+|+++.++++..++.+++     +.+..+.+|...|.+++|+|+++.|++++.|++|
T Consensus       207 w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV  286 (577)
T ss_dssp             ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            98543211100 01112245578999999999988888877     4677889999999999999999999999999999


Q ss_pred             EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeE
Q 012699          172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF  251 (458)
Q Consensus       172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  251 (458)
                      ++||.... ..  .....|...|.+++|+ +++.++++++.|+.|++||..... ...+..+.  ..+.+++++|++..+
T Consensus       287 ~~w~~~~~-~~--~~~~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~--~~v~~~~~s~~g~~l  359 (577)
T 2ymu_A          287 KLWNRNGQ-LL--QTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQH-LQTLTGHS--SSVWGVAFSPDGQTI  359 (577)
T ss_dssp             EEEETTSC-EE--EEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCE-EEEECCCS--SCEEEEEECTTSSEE
T ss_pred             EEEeCCCc-EE--EEEecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCC--CCEEEEEECCCCCEE
Confidence            99996543 22  2334567899999999 788899999999999999987554 34444433  689999999999999


Q ss_pred             EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      ++++.+             |.+++||. +++....+.  .|...|.+++|+|++++|++++.|+.|++||. +++.+..+
T Consensus       360 ~~~~~d-------------g~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~  422 (577)
T 2ymu_A          360 ASASDD-------------KTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  422 (577)
T ss_dssp             EEEETT-------------SEEEEEET-TCCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE
T ss_pred             EEEeCC-------------CEEEEEcC-CCCEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe
Confidence            999988             59999996 456666554  67788999999999999999999999999995 57888899


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEE
Q 012699          332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAP  411 (458)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~  411 (458)
                      .+|...|.+++|+|++++|++++.|+.|++||... +....         ...+...+.+++|+|++++|++++.|+.|+
T Consensus       423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~---------~~~~~~~v~~~~~spd~~~las~~~d~~i~  492 (577)
T 2ymu_A          423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQT---------LTGHSSSVRGVAFSPDGQTIASASDDKTVK  492 (577)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEE---------EECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEE---------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence            99999999999999999999999999999999753 22211         124677899999999999999999999999


Q ss_pred             EEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          412 IYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       412 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +|+.. ++.+..+.+|...|++++|+|++++||+++.||.|++||++
T Consensus       493 iw~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          493 LWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEETT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEcCC-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            99964 44566677999999999999999999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-53  Score=412.63  Aligned_cols=399  Identities=17%  Similarity=0.268  Sum_probs=328.8

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ......|...|.++++ ++++++|++++.|+.+++|+..........     ........+++++++.++++++.|+.++
T Consensus       173 ~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d~~i~  246 (577)
T 2ymu_A          173 LQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVK  246 (577)
T ss_dssp             EEEEECCSSCEEEEEE-CTTSSCEEEEETTSEEEEECTTSCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             eeeccCCCcceeeeee-cCCCCEEEEEcCCCEEEEEeCCCcEEEEEe-----cCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            4456779999999999 999999999999999999996543222111     1223344577777889999999999999


Q ss_pred             ccccccccCCcc-cceeeeccCCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699           97 PSKLEFEDVGAG-DIIQMFNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGT  170 (458)
Q Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  170 (458)
                      +|+......... .........+|+|+++.++++..++.+.+     +.+..+.+|...|.+++|+|++++|++++.|++
T Consensus       247 ~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~  326 (577)
T 2ymu_A          247 LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT  326 (577)
T ss_dssp             EECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence            999653221110 01112345578999999999998888876     456788999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699          171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      |++||.......   ....+...+.+++|+ +++.++++++.||.+++||. +++.+..+..+.  ..|.+++|+|+++.
T Consensus       327 i~~w~~~~~~~~---~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~  399 (577)
T 2ymu_A          327 VKLWNRNGQHLQ---TLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQT  399 (577)
T ss_dssp             EEEEETTSCEEE---EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--SCEEEEEECTTSSC
T ss_pred             EEEEeCCCCeeE---EEeCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--CCeEEEEECCCCCE
Confidence            999998654332   234567889999999 78899999999999999995 456666666554  68999999999999


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG  330 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  330 (458)
                      +++++.+             +.|++||.. ++....+.  .|...|.+++|+|++++|++++.|+.|++||. +++.+..
T Consensus       400 l~~~~~d-------------~~v~~~~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~  462 (577)
T 2ymu_A          400 IASASDD-------------KTVKLWNRN-GQLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQT  462 (577)
T ss_dssp             EEEEETT-------------SEEEEECTT-CCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEE
T ss_pred             EEEEeCC-------------CEEEEEeCC-CCEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEE
Confidence            9999988             499999964 45655554  67788999999999999999999999999996 5778888


Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699          331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA  410 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i  410 (458)
                      +.+|...|.+++|+|++++|++++.|+.|++||... +....         ...|...|.+++|+|+|++|++++.|+.|
T Consensus       463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~~---------~~~h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT---------LTGHSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEEE---------EECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEEE---------EeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence            999999999999999999999999999999999643 22221         22577889999999999999999999999


Q ss_pred             EEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          411 PIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       411 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ++||.. ++.+..+.+|...|++++|+||+++|+|++.|++|++||
T Consensus       533 ~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          533 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEeCC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999975 446666779999999999999999999999999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-50  Score=402.26  Aligned_cols=429  Identities=9%  Similarity=0.012  Sum_probs=313.1

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      ...||...|++++| +|++++||+|+.|++++||+....+......+     ......+.+++ +++|++++.|+++++|
T Consensus        12 ~~~gh~~~V~~laf-spdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~-----~~~V~~l~fsp-g~~L~S~s~D~~v~lW   84 (902)
T 2oaj_A           12 NKYGMSSKPIAAAF-DFTQNLLAIATVTGEVHIYGQQQVEVVIKLED-----RSAIKEMRFVK-GIYLVVINAKDTVYVL   84 (902)
T ss_dssp             EEEECSSCEEEEEE-ETTTTEEEEEETTSEEEEECSTTCEEEEECSS-----CCCEEEEEEET-TTEEEEEETTCEEEEE
T ss_pred             cccCCCCCcEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCC-----CCCEEEEEEcC-CCEEEEEECcCeEEEE
Confidence            44589999999999 99999999999999999999876654322222     23344566666 6699999999999999


Q ss_pred             ccccccCC-cccceeeeccCCCCcCCCcceeccCCCeeeeeee-----------------eeeccCCCCeEEEEeCCC-C
Q 012699           99 KLEFEDVG-AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFL-----------------ETFLGHTSPISCCRFSSS-G  159 (458)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~-~  159 (458)
                      ++...... ...........+|+|+++.++++..++.++++.+                 ..+.+|.++|++++|+|+ +
T Consensus        85 d~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           85 SLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             ETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             ECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            98753311 0001112345679999999999999998887322                 345789999999999996 5


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCcccc----------------ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNAT----------------IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA  223 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~  223 (458)
                      ..|++|+.||+| +||+.+++.......                ..|...|.+++|+ +++.+|++++.||.|++||+++
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTT
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCC
Confidence            789999999999 999988764321111                1123679999999 6789999999999999999999


Q ss_pred             Cceeee--cc---CC-----------CCCCceeeeeec----CCC-CeEEEeecccCC----------------------
Q 012699          224 KRVVCD--LN---TT-----------DAFPSVLDLKCS----PVE-PIFVSAAASRRY----------------------  260 (458)
Q Consensus       224 ~~~~~~--~~---~~-----------~~~~~v~~~~~~----~~~-~~~~~~~~~~~~----------------------  260 (458)
                      ++++..  +.   .+           .+...|.+++|+    |++ ..+++++.+...                      
T Consensus       243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~  322 (902)
T 2oaj_A          243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE  322 (902)
T ss_dssp             CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred             CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence            887653  21   11           123469999995    443 355555433100                      


Q ss_pred             -------------------C----------------------CcceeeccceeEEEEECCCCceeEE-----ee------
Q 012699          261 -------------------G----------------------SSNIYSWGFASLTVWNMKTWKAMTV-----LP------  288 (458)
Q Consensus       261 -------------------~----------------------~~~~~~~~~g~i~i~d~~~~~~~~~-----~~------  288 (458)
                                         +                      ..++....+|.|++||+.++.....     ..      
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~  402 (902)
T 2oaj_A          323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP  402 (902)
T ss_dssp             HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred             hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence                               0                      0122333458899999977643221     01      


Q ss_pred             ----------------------------cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee--eee----e--
Q 012699          289 ----------------------------LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI--TGW----P--  332 (458)
Q Consensus       289 ----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~----~--  332 (458)
                                                  +.+|...+.+++|+|++++|++|+.|++|++||+.++...  ..+    .  
T Consensus       403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~  482 (902)
T 2oaj_A          403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT  482 (902)
T ss_dssp             BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred             CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence                                        1223333444556789999999999999999999887432  111    1  


Q ss_pred             ---CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE------------eec----------------------
Q 012699          333 ---AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW------------TRN----------------------  375 (458)
Q Consensus       333 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~~----------------------  375 (458)
                         +|...|.+++|+|++++||+|+.||+|++||+.+.+....            ...                      
T Consensus       483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (902)
T 2oaj_A          483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR  562 (902)
T ss_dssp             TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred             cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence               7899999999999999999999999999999986531000            000                      


Q ss_pred             --CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-----cccC-CCCCcEEEEEEC-----CCC--
Q 012699          376 --CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-----MRTL-PHGAAITTVDWH-----PTL--  440 (458)
Q Consensus       376 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-----~~~~-~h~~~v~~~~~~-----~~~--  440 (458)
                        .........|...|++++||||| +||+|+.|++|++||+++...+     ..+. +|...|++++|+     |||  
T Consensus       563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~  641 (902)
T 2oaj_A          563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS  641 (902)
T ss_dssp             EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred             CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence              00012234588899999999999 9999999999999999876433     2333 899999999999     886  


Q ss_pred             -CeEEEecCCCcEEEEeC
Q 012699          441 -PMFLTGSADHSVQVMSL  457 (458)
Q Consensus       441 -~~l~s~~~dg~v~iw~l  457 (458)
                       ++|++|+.|++|++||+
T Consensus       642 ~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          642 SILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEETTSEEEEEEE
T ss_pred             ceEEEEEecCCcEEEEEE
Confidence             79999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-49  Score=352.10  Aligned_cols=293  Identities=15%  Similarity=0.282  Sum_probs=259.2

Q ss_pred             eeeeeccCCCCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          139 FLETFLGHTSPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      ..+.+++|.+.|++++|+|+    +++|+||+.|++|++|++.............|...|.+++|+ +++.++++++.|+
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~-~~~~~l~s~s~D~  102 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDA  102 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-SSSSEEEEEETTS
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC-CCCCEEEEEeCCC
Confidence            45677899999999999985    678999999999999999876543333345677899999999 7788999999999


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      +|++||+.+++.+..+..+.  ..+..++|+|+++.+++++.+             |.+++||+++++....+.  .+..
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~g~~d-------------g~v~i~~~~~~~~~~~~~--~~~~  165 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHV-------------GKVNIFGVESGKKEYSLD--TRGK  165 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCT--TCCCCEEECTTSSEEEEECTT-------------SEEEEEETTTCSEEEEEE--CSSS
T ss_pred             cEEEEECCCCCEEEEEeCCC--ccEEEEEECCCCCEEEEEcCC-------------CcEEEEEcCCCceeEEec--CCCc
Confidence            99999999999888876654  578899999999999999988             599999999988877765  4567


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      .+.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++......  
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--  243 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--  243 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--
Confidence            799999999999999999999999999999999999999999999999999999999999999999999987654332  


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                             ...|...|.+++|+|++++|++++.|++|++||+.+...+..+.+|...|++++|+|++++|++++.||.|+|
T Consensus       244 -------~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v  316 (321)
T 3ow8_A          244 -------LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI  316 (321)
T ss_dssp             -------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             -------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence                   2357778999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             EeCC
Q 012699          455 MSLS  458 (458)
Q Consensus       455 w~l~  458 (458)
                      ||+.
T Consensus       317 wd~p  320 (321)
T 3ow8_A          317 YDCP  320 (321)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.3e-48  Score=378.11  Aligned_cols=410  Identities=13%  Similarity=0.093  Sum_probs=314.7

Q ss_pred             HhhccccCCCcc-eeeeeeccC--CCceeeeeecCcceEEeccccc--------cccccceeeeeccCCceeeeeCCccc
Q 012699           15 AQLSRLKNNSET-IKYANIGQT--KNSTLASGVNEESLLLSTNSSE--------ACATTATHMGSAEMGQTWASSRPALS   83 (458)
Q Consensus        15 ~~~~~l~~h~~~-i~~~~~~s~--~~~~l~s~~~d~~~~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (458)
                      +.++.+.+|... |++++| +|  ++++|++|+.|+++++|+...+        .....+.    ........+.+++++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~-sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~  128 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKF-SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ----VLAGPISDISWDFEG  128 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEE-CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE----CCSSCEEEEEECTTS
T ss_pred             ccceEEecCCCceEEEEEE-CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh----cccccEEEEEEeCCC
Confidence            466789999999 999999 99  9999999999999999999755        1111111    123344556667778


Q ss_pred             eeEeeccCC----CcccccccccccCCcccceeeeccCCCCcCCC-cceeccCCCeeee------eeeeeeccCCC---C
Q 012699           84 RFATNMSGN----DSISPSKLEFEDVGAGDIIQMFNDGLYTENGR-DAQGEEDFPEVKV------DFLETFLGHTS---P  149 (458)
Q Consensus        84 ~~l~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~------~~~~~~~~h~~---~  149 (458)
                      +++++++.+    +.+.+|+...................|+|+++ .++++..++.+.+      +.+..+.+|..   .
T Consensus       129 ~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~  208 (615)
T 1pgu_A          129 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF  208 (615)
T ss_dssp             SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred             CEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence            888888877    68888984322211112222345667999998 6888888888877      46678889999   9


Q ss_pred             eEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          150 ISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       150 v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      |.+++|+|+ +++|++++.||.|++||+.+++...... .   .+...|.+++|+  ++.+|++++.||.|++||+++++
T Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec-ccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCc
Confidence            999999999 9999999999999999998877653221 2   677899999998  78899999999999999999999


Q ss_pred             eeeeccCCC--CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec--------------
Q 012699          226 VVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL--------------  289 (458)
Q Consensus       226 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~--------------  289 (458)
                      ....+..+.  ....+..+.+. ++..+++++.++             .|++||+.+++....+..              
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g-------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~  351 (615)
T 1pgu_A          286 CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG-------------TLNFYELGHDEVLKTISGHNKGITALTVNPLI  351 (615)
T ss_dssp             EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS-------------CEEEEETTEEEEEEEECCCSSCEEEEETTTTE
T ss_pred             EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC-------------CEEEEECCCCcEEEEEeCCCCCEEEEEecCcE
Confidence            888776652  12456777775 888888888774             555555444333222210              


Q ss_pred             -----------------CCC------------------------------------------------------------
Q 012699          290 -----------------GED------------------------------------------------------------  292 (458)
Q Consensus       290 -----------------~~~------------------------------------------------------------  292 (458)
                                       ..|                                                            
T Consensus       352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  431 (615)
T 1pgu_A          352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI  431 (615)
T ss_dssp             EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred             EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence                             112                                                            


Q ss_pred             --------------CCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          293 --------------PPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       293 --------------~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                                    ...+.+++|+  +++|++++. |+.|++||+.+++.. ..+..|...|.+++|+|++++|++++.|
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d  509 (615)
T 1pgu_A          432 LQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM  509 (615)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence                          2234444444  556666776 777777777766554 6667899999999999999999999999


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCC-CCCceeEEEEcc----------CCCEEEEEeCCccEEEEEccCC-Cccccc
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPES-SKSCRHEMALDV----------NGRRLLVTSGSVRAPIYQVRGH-ASGMRT  424 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~----------~g~~l~~~~~~~~i~i~~~~~~-~~~~~~  424 (458)
                      |.|++||+.+.+....         ... |...|.+++|+|          ++++|++++.|+.|++|++.+. .....+
T Consensus       510 g~i~iw~~~~~~~~~~---------~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  580 (615)
T 1pgu_A          510 GKILLYDLQSREVKTS---------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL  580 (615)
T ss_dssp             SCEEEEETTTTEEEEC---------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             CeEEEeeCCCCcceeE---------eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence            9999999987654321         223 778899999999          9999999999999999999987 555666


Q ss_pred             CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          425 LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       425 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+|...|++++|+|+++ |++++.||.|++|+++
T Consensus       581 ~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          581 NAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             hcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            78999999999999999 9999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-48  Score=358.18  Aligned_cols=289  Identities=18%  Similarity=0.312  Sum_probs=261.5

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      ...+.+|.++|++++|+|++++|++|+.||+|++||+.+++...  ....|...|.+++|+ +++.+|++|+.|++|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--~l~~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFD-HSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCCCEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeccCCcEEEEEEc-CCCCEEEEEeCCCeEEEE
Confidence            34678999999999999999999999999999999999887653  344577899999999 678899999999999999


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      |+.+++++..+..+.  ..|.+++|+|++..+++++.|             +.|++||++++.+...+.  +|...|.++
T Consensus       178 d~~~~~~~~~~~~h~--~~V~~v~~~p~~~~l~s~s~D-------------~~i~~wd~~~~~~~~~~~--~h~~~v~~~  240 (410)
T 1vyh_C          178 DFQGFECIRTMHGHD--HNVSSVSIMPNGDHIVSASRD-------------KTIKMWEVQTGYCVKTFT--GHREWVRMV  240 (410)
T ss_dssp             ETTSSCEEECCCCCS--SCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEE--CCSSCEEEE
T ss_pred             eCCCCceeEEEcCCC--CCEEEEEEeCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEe--CCCccEEEE
Confidence            999999888887665  689999999999999999998             599999999999888775  677889999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC--------------------CCEEEEecCCCeE
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD--------------------ETSIFSLGSDGKI  359 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i  359 (458)
                      .++|++.+|++|+.|+.|++||+++++....+.+|...|.+++|+|+                    +.+|++++.|+.|
T Consensus       241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999999999996                    6789999999999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      ++||++++......         ..|...|.+++|+|+|++|++++.|+.|++||+.+......+.+|...|++++|+|+
T Consensus       321 ~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~  391 (410)
T 1vyh_C          321 KMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT  391 (410)
T ss_dssp             EEEETTTTEEEEEE---------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred             EEEECCCCceEEEE---------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence            99999976544322         247778999999999999999999999999999988877778899999999999999


Q ss_pred             CCeEEEecCCCcEEEEeC
Q 012699          440 LPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       440 ~~~l~s~~~dg~v~iw~l  457 (458)
                      +++|++|+.||+|+||++
T Consensus       392 ~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          392 APYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEETTSEEEEEC-
T ss_pred             CCEEEEEeCCCcEEEEeC
Confidence            999999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-48  Score=349.00  Aligned_cols=291  Identities=16%  Similarity=0.237  Sum_probs=253.8

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..+++++|.++|++++|+|++++|++|+.||+|++||+.+++...  ....+...|.+++|+ ++++++++++.|+.++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYA-PSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--EEECSSSCEEEEEEC-TTSSEEEEEETTCEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--EeecCCccEEEEEEC-CCCCEEEEEeCCCeEE
Confidence            3677899999999999999999999999999999999998876543  234567789999999 6889999999999999


Q ss_pred             EEEcCCCc----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          218 AWNVDAKR----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       218 ~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +|++.++.    ....+..+  ...+.++.|++++. +++++.|             +.|++||+++++....+.  +|.
T Consensus       123 iw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~s~d-------------~~i~~wd~~~~~~~~~~~--~h~  184 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGH--TGYLSCCRFLDDNQ-IVTSSGD-------------TTCALWDIETGQQTTTFT--GHT  184 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECC--SSCEEEEEEEETTE-EEEEETT-------------SCEEEEETTTTEEEEEEC--CCS
T ss_pred             EEECccCCCcceeEEEecCC--CccEEEEEECCCCc-EEEEECC-------------CcEEEEECCCCcEEEEEc--CCC
Confidence            99998753    33334333  36899999998876 6777777             599999999988877764  788


Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      ..|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+++.......
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  264 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999876544321


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                             ........+.+++|+|+|++|++|+.|+.|++||+........+.+|...|++++|+|++++|++|+.||.|+
T Consensus       265 -------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~  337 (340)
T 1got_B          265 -------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             -------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             -------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence                   1123345699999999999999999999999999998877777789999999999999999999999999999


Q ss_pred             EEe
Q 012699          454 VMS  456 (458)
Q Consensus       454 iw~  456 (458)
                      |||
T Consensus       338 iWd  340 (340)
T 1got_B          338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-48  Score=409.93  Aligned_cols=419  Identities=16%  Similarity=0.203  Sum_probs=343.9

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      .+.+|...|++++| +++|++|++|+.|+++++|+..++.....+.    ...+....+.+++++.++++++.|+++++|
T Consensus       610 ~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          610 VVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETGEKLLDIK----AHEDEVLCCAFSSDDSYIATCSADKKVKIW  684 (1249)
T ss_dssp             EECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEecccccEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCEEEEec----cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            56789999999999 9999999999999999999999886553222    123344557778889999999999999999


Q ss_pred             ccccccCCc--ccceeeeccCCCCc--CCCcceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEEEEEeCC
Q 012699           99 KLEFEDVGA--GDIIQMFNDGLYTE--NGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNIASASVD  168 (458)
Q Consensus        99 ~~~~~~~~~--~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  168 (458)
                      ++.......  ...........|+|  ++..+++++.++.+.+      ..+..+.+|.+.|++++|+|++++|++++.|
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            987533110  00111223456888  4557888888888877      3567788999999999999999999999999


Q ss_pred             CcEEEEecCCCCCCCcc-----------------------------------------------------ccccCCCceE
Q 012699          169 GTVRIWTYDSSTPASRN-----------------------------------------------------ATIYCGTEIM  195 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~-----------------------------------------------------~~~~~~~~v~  195 (458)
                      |+|++||+.++......                                                     ....+...+.
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence            99999998765321100                                                     0013456788


Q ss_pred             EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC----------------
Q 012699          196 SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR----------------  259 (458)
Q Consensus       196 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------------  259 (458)
                      +++|+ +++.++++++.||.|++||+.++.....+..+.  ..|.+++|+|++..+++++.++.                
T Consensus       845 ~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~  921 (1249)
T 3sfz_A          845 YCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV  921 (1249)
T ss_dssp             EEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred             EEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeec
Confidence            99999 688899999999999999999999888877655  78999999999999999987742                


Q ss_pred             --------------------------------------------------CCCcceeeccceeEEEEECCCCceeEEeec
Q 012699          260 --------------------------------------------------YGSSNIYSWGFASLTVWNMKTWKAMTVLPL  289 (458)
Q Consensus       260 --------------------------------------------------~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~  289 (458)
                                                                        .+..++.+..+|.|++||+.+++....+  
T Consensus       922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~--  999 (1249)
T 3sfz_A          922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG--  999 (1249)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--
T ss_pred             ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--
Confidence                                                              1223455667789999999888877655  


Q ss_pred             CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699          290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      ..|...|.+++|+|++++|++++.||.|++||+.+++... +..|...|.+++|+|++ .+++++.|+.|++||+.++..
T Consensus      1000 ~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A         1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp             CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce
Confidence            4778889999999999999999999999999999887664 56899999999999976 678899999999999987654


Q ss_pred             eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          370 VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      ....         ..+...+.+++|+|++++|++++.|+.|++||+.+......+.+|...|++++|+|++++|++++.|
T Consensus      1078 ~~~~---------~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A         1078 ERDF---------TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp             CEEE---------ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             eEEE---------cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence            3322         2466779999999999999999999999999999988888888999999999999999999999999


Q ss_pred             CcEEEEeCC
Q 012699          450 HSVQVMSLS  458 (458)
Q Consensus       450 g~v~iw~l~  458 (458)
                      |.|++||+.
T Consensus      1149 g~i~vwd~~ 1157 (1249)
T 3sfz_A         1149 GEIRIWNVS 1157 (1249)
T ss_dssp             SCCCEEESS
T ss_pred             CEEEEEECC
Confidence            999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.4e-49  Score=413.56  Aligned_cols=436  Identities=11%  Similarity=0.119  Sum_probs=345.9

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-------ccceeeeeccCC---------------
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-------TTATHMGSAEMG---------------   72 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-------~~~~~~~~~~~~---------------   72 (458)
                      +.+..+.+|...|.+++| +++|++|++|+.|+++++||..++...       ..+..+.|++++               
T Consensus       648 ~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~  726 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK  726 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred             CEEEEeccCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence            346788899999999999 999999999999999999999877654       233345555421               


Q ss_pred             ------------------ceeeeeCCccceeEeeccCCCcccccccccccCCcc--------------------------
Q 012699           73 ------------------QTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAG--------------------------  108 (458)
Q Consensus        73 ------------------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~--------------------------  108 (458)
                                        ....+.+++++.++++++.|+++++|++........                          
T Consensus       727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence                              122345566788999999999999999864321000                          


Q ss_pred             -------------------------------cceeeeccCCCCcCCCcceeccCCCeeee------eeeeeeccCCCCeE
Q 012699          109 -------------------------------DIIQMFNDGLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPIS  151 (458)
Q Consensus       109 -------------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~  151 (458)
                                                     ..........|+|+++.++++..++.+.+      ..+..+.+|.+.|.
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH  886 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence                                           00001122346777777777777777766      45677889999999


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-----------------------------------ccccccCCCceEE
Q 012699          152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-----------------------------------RNATIYCGTEIMS  196 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----------------------------------~~~~~~~~~~v~~  196 (458)
                      +++|+|++++|++++.||+|++|++.+.....                                   ..........+.+
T Consensus       887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  966 (1249)
T 3sfz_A          887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC  966 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence            99999999999999999999999975321100                                   0011123457899


Q ss_pred             EEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCC----------------
Q 012699          197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY----------------  260 (458)
Q Consensus       197 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------  260 (458)
                      ++|+ +++.++++|+.+|.|++||+.+++....+..+.  ..|.+++|+|+++.+++++.++..                
T Consensus       967 ~~~s-p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A          967 CCLS-PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK--KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp             EEEC-TTSSEEEEEETTSCCEEEETTTTSCEEECCCCS--SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred             EEEc-CCCCEEEEEcCCCCEEEEEcCCCceeeecccCC--CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence            9999 788899999999999999999999888777655  689999999999999999877521                


Q ss_pred             -----------CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee
Q 012699          261 -----------GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT  329 (458)
Q Consensus       261 -----------~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  329 (458)
                                 +..++.+..+|.|++||+.+++....+.  .|...|.+++|+|++++|++++.||.|++||+.+++++.
T Consensus      1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A         1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp             SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB
T ss_pred             CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee
Confidence                       2234556677899999999988887775  577789999999999999999999999999999999999


Q ss_pred             eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCcc
Q 012699          330 GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVR  409 (458)
Q Consensus       330 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~  409 (458)
                      .+.+|...|++++|+|++++|++++.||.|++||+.++.................+...|.+++|+|+|++|++++  |.
T Consensus      1122 ~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~ 1199 (1249)
T 3sfz_A         1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY 1199 (1249)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS
T ss_pred             eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce
Confidence            9999999999999999999999999999999999997654332111111112245778899999999999999885  89


Q ss_pred             EEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          410 APIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       410 i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |++||+.++.....+..|...|++++|+|++++|++++.||.|++|++.
T Consensus      1200 v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1200 LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             EEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             EEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence            9999999998888888899999999999999999999999999999973

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.3e-47  Score=343.85  Aligned_cols=292  Identities=16%  Similarity=0.255  Sum_probs=253.7

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..+.+.+|.++|++++|+|++++|+||+.||+|++||..++....  ....+...|.+++|+ +++.++++++.|+.++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~~~~~~v~~~~~s-p~g~~lasg~~d~~i~  131 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AVTMPCTWVMACAYA-PSGCAIACGGLDNKCS  131 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEECSSSCCCEEEEC-TTSSEEEEESTTSEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EEecCCCCEEEEEEC-CCCCEEEEeeCCCCEE
Confidence            3677899999999999999999999999999999999988776543  233456789999999 7889999999999999


Q ss_pred             EEEcCCCc------eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          218 AWNVDAKR------VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       218 ~wd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      +|++....      ....+..  |...+.++.|+|++..+++++.|             |.|++||+++++....+.  +
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~D-------------~~v~lwd~~~~~~~~~~~--~  194 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGD-------------GTCALWDVESGQLLQSFH--G  194 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEE--CSSCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEE--C
T ss_pred             EEEEeccccccccccceeeec--cCCcEEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCeEEEEEc--C
Confidence            99986542      2222333  33689999999999999999988             599999999999888775  6


Q ss_pred             CCCcEEEEEEcc--CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699          292 DPPAITSLCFNH--NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       292 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      |...|.+++|+|  ++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++....
T Consensus       195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~  274 (354)
T 2pbi_B          195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE  274 (354)
T ss_dssp             CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            778899999988  478999999999999999999999999999999999999999999999999999999999987644


Q ss_pred             eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          370 VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      ....       ........+.+++|+|+|++|++++.|+.|++||+.++..+..+.+|...|++++|+|++++|++|+.|
T Consensus       275 ~~~~-------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          275 VAIY-------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             EEEE-------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEE-------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            3221       112234568899999999999999999999999998887777788999999999999999999999999


Q ss_pred             CcEEEEe
Q 012699          450 HSVQVMS  456 (458)
Q Consensus       450 g~v~iw~  456 (458)
                      |+|+||+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.8e-47  Score=370.62  Aligned_cols=415  Identities=11%  Similarity=0.136  Sum_probs=323.1

Q ss_pred             ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccc----cccccceeeeeccCCc-eeeeeCCc--cceeEeeccCC
Q 012699           20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSE----ACATTATHMGSAEMGQ-TWASSRPA--LSRFATNMSGN   92 (458)
Q Consensus        20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~   92 (458)
                      -..|...|++++| +|+|++|++++ ++.+.+|+...+    .....+   . ..... ...+.+++  +++++++++.|
T Consensus        14 ~~~~~~~v~~~~~-spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~---~-~h~~~~v~~~~~sp~~~~~~l~s~~~d   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSY-DPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF---T-GHGSSVVTTVKFSPIKGSQYLCSGDES   87 (615)
T ss_dssp             CCCCTTCCCCCEE-ETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE---C-TTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred             CCCccCceeEEEE-CCCCCEEEEec-CCeEEEEECCCCCCccccceEE---e-cCCCceEEEEEECcCCCCCEEEEecCC
Confidence            3568999999999 99999999998 889999999876    332111   1 11223 44566777  78999999999


Q ss_pred             Ccccccccccc------cCCcccc----eeeeccCCCCcCCCcceeccCC----Ceeee----eeeeeeccCCCCeEEEE
Q 012699           93 DSISPSKLEFE------DVGAGDI----IQMFNDGLYTENGRDAQGEEDF----PEVKV----DFLETFLGHTSPISCCR  154 (458)
Q Consensus        93 ~~i~~~~~~~~------~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~----~~~~~----~~~~~~~~h~~~v~~~~  154 (458)
                      +.+++|++...      .......    .......+|+|+++.++++..+    ..+.+    +.+..+.+|...|.+++
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH  167 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE
Confidence            99999999642      1111111    1223456799999999888765    23333    56778889999999999


Q ss_pred             eCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCC---ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          155 FSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       155 ~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      |+|+++ ++++++.|+.|++||+.+.+...  ....+..   .|.+++|+|.++++|++++.||.|++||+.+++.+..+
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            999998 79999999999999988766543  2334556   89999999433899999999999999999999988887


Q ss_pred             cCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC--CCCcEEEEEEccCCC
Q 012699          231 NTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGK  306 (458)
Q Consensus       231 ~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  306 (458)
                      ...  .+...+.+++|+ ++..+++++.+             |.|++||+++++....+....  ....+.++.|+ +++
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  310 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGAD-------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG  310 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETT-------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCC-------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence            321  233789999999 99999999988             599999999999888876432  23567888885 889


Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC---------------------------------CCEEEEe
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD---------------------------------ETSIFSL  353 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~l~~~  353 (458)
                      ++++++.||.|++||+.+++.+..+.+|...|.+++| |+                                 +..|+++
T Consensus       311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~  389 (615)
T 1pgu_A          311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI  389 (615)
T ss_dssp             EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred             eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence            9999999999999999998888888777777766666 54                                 5667777


Q ss_pred             cCCCeEEEEeccCCCe---------------------------------e------------------------------
Q 012699          354 GSDGKIIEWSLQNQGQ---------------------------------V------------------------------  370 (458)
Q Consensus       354 ~~dg~i~iwd~~~~~~---------------------------------~------------------------------  370 (458)
                      +.|+.+++||+.+...                                 .                              
T Consensus       390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i  469 (615)
T 1pgu_A          390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI  469 (615)
T ss_dssp             ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred             eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeE
Confidence            7777777777653110                                 0                              


Q ss_pred             -EEeecCCcc--cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECC--------
Q 012699          371 -LWTRNCSRF--CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHP--------  438 (458)
Q Consensus       371 -~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~--------  438 (458)
                       .+.......  .....+...+.+++|+|++++|++++.|+.|++|++.+.+.+..+.+ |...|++++|+|        
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence             000000000  33456788899999999999999999999999999999887777777 999999999999        


Q ss_pred             --CCCeEEEecCCCcEEEEeCC
Q 012699          439 --TLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       439 --~~~~l~s~~~dg~v~iw~l~  458 (458)
                        ++++|++++.||.|++|+++
T Consensus       550 ~~~~~~l~~~~~dg~i~iw~~~  571 (615)
T 1pgu_A          550 EIEEDLVATGSLDTNIFIYSVK  571 (615)
T ss_dssp             CCSCCEEEEEETTSCEEEEESS
T ss_pred             ccCCCEEEEEcCCCcEEEEECC
Confidence              99999999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.1e-47  Score=347.04  Aligned_cols=301  Identities=16%  Similarity=0.240  Sum_probs=251.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      .+.++|.+|.++|++++|+|++++|++|+.||+|++||+.+++...  ....|...|.+++|+ +++++|++|+.|+.++
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~~h~~~v~~~~~s-~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIKLHCPWVMECAFA-PNGQSVACGGLDSACS  133 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEECCCTTCCCCEEC-TTSSEEEECCSSSCCE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEecCCCCEEEEEEC-CCCCEEEEeeCCCcEE
Confidence            4678899999999999999999999999999999999998776543  334567789999999 7889999999999999


Q ss_pred             EEEcCCCce-------eeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699          218 AWNVDAKRV-------VCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL  289 (458)
Q Consensus       218 ~wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~  289 (458)
                      +||+.+...       ...+.  .|...+.++.|.|++ ..+++++.|             +.|++||+++++....+..
T Consensus       134 iw~~~~~~~~~~~~~~~~~~~--gh~~~v~~~~~~~~~~~~l~s~s~D-------------~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          134 IFNLSSQADRDGNMPVSRVLT--GHKGYASSCQYVPDQETRLITGSGD-------------QTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             EEECCCCSSCCCSSTTCCBCC--CCSSCCCCCBCCSSSSSCEEEECTT-------------SCEEEECTTTCCEEEEECC
T ss_pred             EEECCCCccccCCccceeecc--CCCcceEEEEEecCCCCEEEEECCC-------------CcEEEEEcCCCcEEEEeec
Confidence            999975421       12233  334678899999975 468888888             5999999999988876632


Q ss_pred             ---CCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCC-CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          290 ---GEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMS-AGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       290 ---~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                         .+|...|.+++|+| ++.+|++|+.|+.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence               46778899999987 78999999999999999998 45778889999999999999999999999999999999999


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc----CCCCCcEEEEEECCCC
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT----LPHGAAITTVDWHPTL  440 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~----~~h~~~v~~~~~~~~~  440 (458)
                      +++..........  .....+...+.+++|+|+|++|++|+.||.|++||+...+....+    .+|...|++++|+|++
T Consensus       279 ~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          279 RTGHQLQVYNREP--DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             TTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             CCCcEEEEecccc--cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            9865543322111  111223345899999999999999999999999999877655444    4799999999999999


Q ss_pred             CeEEEecCCCcEEEEeCC
Q 012699          441 PMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       441 ~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|++|+.||+|+||+++
T Consensus       357 ~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          357 SALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SEEEEECTTSCEEEEECC
T ss_pred             CEEEEeeCCCCEEEEecC
Confidence            999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-46  Score=345.30  Aligned_cols=290  Identities=17%  Similarity=0.273  Sum_probs=254.9

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ...|.+|...|++++| +|++++|++|+.|+++++||.+++.                                      
T Consensus       101 ~~~l~gh~~~V~~~~~-~p~~~~l~s~s~Dg~i~vwd~~~~~--------------------------------------  141 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGD--------------------------------------  141 (410)
T ss_dssp             SCEEECCSSCEEEEEE-CSSSSEEEEEESSSCEEEEETTTCC--------------------------------------
T ss_pred             eEeecccCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc--------------------------------------
Confidence            3467789999999999 9999999999999999999876551                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                ..+.+.+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus       142 ------------------------------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          142 ------------------------------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             ------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ------------------------------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence                                                      23356789999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      .+.+...  ....|...|.+++|+ +++.+|++++.|++|++||++++.++..+..+.  ..+..+.++|++..+++++.
T Consensus       180 ~~~~~~~--~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~g~~l~s~s~  254 (410)
T 1vyh_C          180 QGFECIR--TMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSN  254 (410)
T ss_dssp             TSSCEEE--CCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSEEEEEET
T ss_pred             CCCceeE--EEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC--ccEEEEEECCCCCEEEEEcC
Confidence            8776543  234577899999999 678899999999999999999999988887665  67999999999999999999


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--------------------CCEEEEEecCCe
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--------------------GKILAASAVDGM  316 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~  316 (458)
                      |             |.|++||+.+++....+.  .|...|.+++|+|+                    +.+|++|+.|+.
T Consensus       255 D-------------~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~  319 (410)
T 1vyh_C          255 D-------------QTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  319 (410)
T ss_dssp             T-------------SCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             C-------------CeEEEEECCCCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence            8             599999999988877664  67788999999996                    678999999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                      |++||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||+.+.+....         ...|...|.+++|+|
T Consensus       320 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~---------~~~h~~~v~~l~~~~  390 (410)
T 1vyh_C          320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT---------LNAHEHFVTSLDFHK  390 (410)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE---------EECCSSCEEEEEECS
T ss_pred             EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE---------EcCCCCcEEEEEEcC
Confidence            99999999999999999999999999999999999999999999999987654332         235777899999999


Q ss_pred             CCCEEEEEeCCccEEEEEcc
Q 012699          397 NGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       397 ~g~~l~~~~~~~~i~i~~~~  416 (458)
                      ++++|++|+.|+.|++|+++
T Consensus       391 ~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          391 TAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SSSCEEEEETTSEEEEEC--
T ss_pred             CCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-46  Score=335.34  Aligned_cols=305  Identities=15%  Similarity=0.235  Sum_probs=247.3

Q ss_pred             eeeeeeccCCC-CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc-ccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          138 DFLETFLGHTS-PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       138 ~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      ..+.++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++...... ....|...|.+++|+ +++++|++++.|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-TTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-CCCCEEEEEECCCc
Confidence            47788999988 9999999999999999999999999999876532211 223577899999999 68899999999999


Q ss_pred             EEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCCC
Q 012699          216 IKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGED  292 (458)
Q Consensus       216 i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~~  292 (458)
                      +++||+..+.  ....+..+  ...|.+++|+|+++.+++++.|             +.|++||+++..... ...+..|
T Consensus        85 v~iw~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRD-------------KSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETT-------------SCEEEEEECTTSCEEEEEEECCC
T ss_pred             EEEEEccCCCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECC-------------CeEEEEECCCCCCeEEEEEecCc
Confidence            9999998775  34455544  4789999999999999999998             599999998765432 2234678


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ...|.+++|+|++++|++|+.|+.|++||.++++  +...+.+|...|.+++|+|++++|++++.|++|++||.......
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            8899999999999999999999999999998765  45678899999999999999999999999999999997543211


Q ss_pred             EEeecC------Ccc-cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc---------ccCCCCCcEEEE
Q 012699          371 LWTRNC------SRF-CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM---------RTLPHGAAITTV  434 (458)
Q Consensus       371 ~~~~~~------~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~---------~~~~h~~~v~~~  434 (458)
                      ......      ... .....+...|..++|+|++..|++++.|+.|++|+........         ...+|...|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence            000000      000 0011366789999999999999999999999999987653211         123799999999


Q ss_pred             EECCCCC-eEEEecCCCcEEEEeCC
Q 012699          435 DWHPTLP-MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       435 ~~~~~~~-~l~s~~~dg~v~iw~l~  458 (458)
                      +|+|++. +||+|+.||+|++|++.
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEec
Confidence            9999985 99999999999999973

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-46  Score=331.59  Aligned_cols=294  Identities=19%  Similarity=0.286  Sum_probs=253.4

Q ss_pred             HhhccccCCCcceeeeeeccCC----CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699           15 AQLSRLKNNSETIKYANIGQTK----NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS   90 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~----~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (458)
                      ..++++++|...|.+++| +++    +.+|+||+.|+++++|+...+..                               
T Consensus        23 ~~~~~~~~H~~~V~~v~~-~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------------   70 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAW-GTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------------   70 (321)
T ss_dssp             EEEEETTSSSSCEEEEEE-C-------CEEEEEETTSCEEEEEEETTEE-------------------------------
T ss_pred             heeeecccCCCcEEEEEE-ecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------------
Confidence            345678899999999999 764    67899999999999998643310                               


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGT  170 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  170 (458)
                                                                     .....+.+|...|.+++|+|++.++++++.|++
T Consensus        71 -----------------------------------------------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           71 -----------------------------------------------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             -----------------------------------------------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             -----------------------------------------------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence                                                           023356799999999999999999999999999


Q ss_pred             EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699          171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      |++||+.+++...  ....+...+.+++|+ +++++|++++.||.|++||+++++....+..+.  ..+.+++|+|++++
T Consensus       104 i~lWd~~~~~~~~--~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~  178 (321)
T 3ow8_A          104 IRLWDLENGKQIK--SIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKY  178 (321)
T ss_dssp             EEEEETTTTEEEE--EEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSE
T ss_pred             EEEEECCCCCEEE--EEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCE
Confidence            9999998876543  233456678899999 788999999999999999999998887776654  67999999999999


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG  330 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  330 (458)
                      +++++.+             |.|++||+++++.+..+.  .|...|.+++|+|++++|++|+.|+.|++||+++++....
T Consensus       179 lasg~~d-------------g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~  243 (321)
T 3ow8_A          179 LASGAID-------------GIINIFDIATGKLLHTLE--GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT  243 (321)
T ss_dssp             EEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             EEEEcCC-------------CeEEEEECCCCcEEEEEc--ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE
Confidence            9999988             599999999998887764  6778899999999999999999999999999999999999


Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699          331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA  410 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i  410 (458)
                      +.+|...|.+++|+|++++|++++.|++|++||+.+.......         ..+...|.+++|+|++++|++++.|+.|
T Consensus       244 ~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~s~~g~~l~s~~~d~~i  314 (321)
T 3ow8_A          244 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---------FDHQDQVWGVKYNGNGSKIVSVGDDQEI  314 (321)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---------cCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            9999999999999999999999999999999999876544322         2467789999999999999999999999


Q ss_pred             EEEEcc
Q 012699          411 PIYQVR  416 (458)
Q Consensus       411 ~i~~~~  416 (458)
                      ++||..
T Consensus       315 ~vwd~p  320 (321)
T 3ow8_A          315 HIYDCP  320 (321)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.8e-45  Score=330.40  Aligned_cols=296  Identities=15%  Similarity=0.215  Sum_probs=244.7

Q ss_pred             eeeeeeeeeccCCCCeEEEEe-----CC-CCCEEEEEeCCCcEEEEecCCCCCCC-----ccccccCCCceEEEEEecCC
Q 012699          135 VKVDFLETFLGHTSPISCCRF-----SS-SGNNIASASVDGTVRIWTYDSSTPAS-----RNATIYCGTEIMSLEWECKS  203 (458)
Q Consensus       135 ~~~~~~~~~~~h~~~v~~~~~-----~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~  203 (458)
                      ........+++|.+.|++++|     ++ ++++|++|+.|++|++||+...+...     ......|...|.+++|+ ++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~-~~   87 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS-QE   87 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC-SS
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC-CC
Confidence            344577889999999999999     76 89999999999999999997654211     12234577889999999 67


Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      +.++++++.|++|++||+++++....+..+.  ..|.+++|+|++..+++++.|             +.|++||+.....
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~  152 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECK  152 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCC--SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCce
Confidence            8899999999999999999999888887665  689999999999999999988             5999999985433


Q ss_pred             eEEeecCCCCCcEEEEEEccCC----------CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          284 MTVLPLGEDPPAITSLCFNHNG----------KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      ........|...|.+++|+|++          .+|++++.||.|++||. ..+....+.+|...|.+++|+|++++|+++
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence            3333334677889999999987          79999999999999994 467778889999999999999999999999


Q ss_pred             cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc--cc-------
Q 012699          354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM--RT-------  424 (458)
Q Consensus       354 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~--~~-------  424 (458)
                      +.|+.|++||+.+........         .+...+.+++|+|++++++++ .++.+++|++.+.....  .+       
T Consensus       232 s~dg~v~iwd~~~~~~~~~~~---------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          232 GKDKKLLIWDILNLTYPQREF---------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             ETTCEEEEEESSCCSSCSEEE---------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             cCCCeEEEEECCCCcccceee---------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            999999999996443222111         123459999999999988755 57779999998764332  22       


Q ss_pred             ----CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          425 ----LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       425 ----~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                          .+|...|++++|+|++++|++|+.||.|++|++
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence                268889999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-46  Score=375.29  Aligned_cols=410  Identities=11%  Similarity=0.124  Sum_probs=292.9

Q ss_pred             cCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccc
Q 012699           21 KNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKL  100 (458)
Q Consensus        21 ~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  100 (458)
                      ..|...|.+++| ++ |++|++++.|+++++||...+.....+.     ..+....+.+++++.++++++.||++++|++
T Consensus        55 ~~~~~~V~~l~f-sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~  127 (902)
T 2oaj_A           55 LEDRSAIKEMRF-VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDI  127 (902)
T ss_dssp             CSSCCCEEEEEE-ET-TTEEEEEETTCEEEEEETTTCSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEET
T ss_pred             cCCCCCEEEEEE-cC-CCEEEEEECcCeEEEEECCCCcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            358889999999 88 8899999999999999999876554332     2245567888889999999999999999998


Q ss_pred             ccccCCc-------------ccceeeeccCCCCcC-CCcceeccCCCeeee------eeeeeeccC--------------
Q 012699          101 EFEDVGA-------------GDIIQMFNDGLYTEN-GRDAQGEEDFPEVKV------DFLETFLGH--------------  146 (458)
Q Consensus       101 ~~~~~~~-------------~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~------~~~~~~~~h--------------  146 (458)
                      .......             ........+.+|+|+ +..++++..++.+ +      +.++.+.+|              
T Consensus       128 ~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~  206 (902)
T 2oaj_A          128 DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKT  206 (902)
T ss_dssp             TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCT
T ss_pred             CCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccc
Confidence            7543210             011123345678896 4678888888887 6      344555555              


Q ss_pred             ----CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----c-----------cCCCceEEEEEecC---C
Q 012699          147 ----TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----I-----------YCGTEIMSLEWECK---S  203 (458)
Q Consensus       147 ----~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~-----------~~~~~v~~~~~~~~---~  203 (458)
                          ...|++++|+|+|++|++|+.||+|++||+.+++.+.....     .           .+...|.+++|++.   +
T Consensus       207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd  286 (902)
T 2oaj_A          207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE  286 (902)
T ss_dssp             TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred             ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence                67899999999999999999999999999988765321000     0           12346888888642   1


Q ss_pred             -CeEEEEEcCC-----CcEEEEE---------------------------------------------------------
Q 012699          204 -DRLLLIGTAD-----GGIKAWN---------------------------------------------------------  220 (458)
Q Consensus       204 -~~~l~~~~~d-----g~i~~wd---------------------------------------------------------  220 (458)
                       +.++++|+.+     ..+.+|+                                                         
T Consensus       287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~  366 (902)
T 2oaj_A          287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL  366 (902)
T ss_dssp             EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred             CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence             2455555443     1444444                                                         


Q ss_pred             --------------cCCCceeee-------ccCC--------------------------------CCCCceeeeeecCC
Q 012699          221 --------------VDAKRVVCD-------LNTT--------------------------------DAFPSVLDLKCSPV  247 (458)
Q Consensus       221 --------------~~~~~~~~~-------~~~~--------------------------------~~~~~v~~~~~~~~  247 (458)
                                    +.++.....       +..+                                .+...+..++|+|+
T Consensus       367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd  446 (902)
T 2oaj_A          367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY  446 (902)
T ss_dssp             EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred             EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence                          333321110       0000                                00112333455677


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEee--c-----CCCCCcEEEEEEccCCCEEEEEecCCeEE
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLP--L-----GEDPPAITSLCFNHNGKILAASAVDGMIH  318 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~--~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  318 (458)
                      ++.+++++.|             |+|++||+.++...  ..+.  +     .+|...|.+++|+|++++||+|+.||+|+
T Consensus       447 g~~laSgs~D-------------gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~  513 (902)
T 2oaj_A          447 GTAFITGHSN-------------GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV  513 (902)
T ss_dssp             EEEEEEEETT-------------SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CcEEEEecCC-------------CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence            7777777777             69999999887432  1111  1     16778899999999999999999999999


Q ss_pred             EEeCCCCc---------------------------------------------eeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          319 MFDMSAGL---------------------------------------------QITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       319 v~d~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      +||+.+++                                             ++..+.+|.+.|++++|+|+| +||+|
T Consensus       514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg  592 (902)
T 2oaj_A          514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA  592 (902)
T ss_dssp             EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred             EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence            99997652                                             366788999999999999999 99999


Q ss_pred             cCCCeEEEEeccCCCeeEEeecCCcccCC-CCCCCceeEEEEc-----cCC---CEEEEEeCCccEEEEEc---cCCCcc
Q 012699          354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDP-ESSKSCRHEMALD-----VNG---RRLLVTSGSVRAPIYQV---RGHASG  421 (458)
Q Consensus       354 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s-----~~g---~~l~~~~~~~~i~i~~~---~~~~~~  421 (458)
                      +.|++|++||+++..... ...+   ... ..|...|++++|+     |||   ++|++|+.|++|++||+   .++...
T Consensus       593 s~D~tv~lwd~~~~~~~~-~~~~---~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          593 YAAGSLMLIDRRGPAIIY-MENI---REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEEG---GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred             eCCCcEEEEECCCCeEEE-Eeeh---hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence            999999999987654322 1111   122 2688889999999     885   89999999999999999   555544


Q ss_pred             cccCCC-----CCcEEEEE-EC----------------------CCCCeEEEecCCCcEEEEeCC
Q 012699          422 MRTLPH-----GAAITTVD-WH----------------------PTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       422 ~~~~~h-----~~~v~~~~-~~----------------------~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ..+.+|     .++|.+++ |+                      +++.+|+++  +..||||++.
T Consensus       669 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~  731 (902)
T 2oaj_A          669 VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLG  731 (902)
T ss_dssp             EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTT
T ss_pred             EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCc
Confidence            454444     57787777 65                      455555544  7789999873

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=330.26  Aligned_cols=206  Identities=16%  Similarity=0.264  Sum_probs=176.8

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc--ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN--ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      .|...|.+++|+|++ .|++|+.||+|+|||+.+++.....  ....|...|.+++|+ +++++|++|+.|++|++||++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECC
Confidence            467789999999985 6889999999999999988765322  233577899999999 788999999999999999999


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      +++.+..+..|.  ..|.+++|+|++. .+++++.|             |.|++||+++++....+....+...+.+++|
T Consensus       158 ~~~~~~~~~~h~--~~V~~~~~~~~~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  222 (344)
T 4gqb_B          158 QQVVLSSYRAHA--AQVTCVAASPHKDSVFLSCSED-------------NRILLWDTRCPKPASQIGCSAPGYLPTSLAW  222 (344)
T ss_dssp             TTEEEEEECCCS--SCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred             CCcEEEEEcCcC--CceEEEEecCCCCCceeeeccc-------------cccccccccccceeeeeecceeeccceeeee
Confidence            999998887765  7899999999986 67888887             5999999999999888766666677999999


Q ss_pred             ccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCC
Q 012699          302 NHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       302 ~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  367 (458)
                      +|+ +++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|++||+.++
T Consensus       223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            995 6788999999999999999999999999999999999999998 57999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.1e-45  Score=324.41  Aligned_cols=291  Identities=15%  Similarity=0.241  Sum_probs=246.6

Q ss_pred             eeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCC---CccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          137 VDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPA---SRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       137 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      +....+|.+|.++|++++|+|++ ++|++|+.|++|++|++......   .......|...|.+++|+ +++.+|++++.
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~   85 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASW   85 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEET
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC-CCCCEEEEEeC
Confidence            34677899999999999999965 89999999999999998654321   112334577899999999 78899999999


Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      |++|++||+.+++....+..+.  ..|.+++|+|++..+++++.|             +.|++||++. +....+  .+|
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D-------------~~i~vwd~~~-~~~~~~--~~h  147 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRD-------------KTIKVWTIKG-QCLATL--LGH  147 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETT-------------SCEEEEETTS-CEEEEE--CCC
T ss_pred             CCEEEEEECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCC-------------CeEEEEECCC-CeEEEE--ecc
Confidence            9999999999999988887665  789999999999999999998             5999999975 444443  478


Q ss_pred             CCcEEEEEEccC------CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          293 PPAITSLCFNHN------GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       293 ~~~i~~~~~~~~------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      ...+.+++|+|.      +.+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            889999999985      44899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc--------CCCCCcEEEEEECC
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--------LPHGAAITTVDWHP  438 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--------~~h~~~v~~~~~~~  438 (458)
                      .+......          ....+.+++|+|++.+|++++.++ +++|+++.......+        ..|...+.+++|+|
T Consensus       228 ~~~~~~~~----------~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          228 KKAMYTLS----------AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             TEEEEEEE----------CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred             CcEEEEec----------CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence            65443321          234699999999999999887665 999998765433222        13567899999999


Q ss_pred             CCCeEEEecCCCcEEEEeC
Q 012699          439 TLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       439 ~~~~l~s~~~dg~v~iw~l  457 (458)
                      +|++|++|+.||.|+||++
T Consensus       297 dg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          297 DGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             TSSEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEeecCceEEEEEE
Confidence            9999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-45  Score=335.64  Aligned_cols=302  Identities=17%  Similarity=0.274  Sum_probs=251.2

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      +.|++|...|++++| +|++++|+||+.|++++||+..++.                                       
T Consensus        60 ~~l~gH~~~V~~~~~-sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------------------   99 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDW-TPEKNWIVSASQDGRLIVWNALTSQ---------------------------------------   99 (380)
T ss_dssp             EEECCCSSCEEEEEE-CTTSSCEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred             ecccccccEEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence            458899999999999 9999999999999999999875541                                       


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                                                               ....+.+|...|.+++|+|++++|++|+.|+.+++|++.
T Consensus       100 -----------------------------------------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a          100 -----------------------------------------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             -----------------------------------------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             -----------------------------------------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence                                                     233556789999999999999999999999999999987


Q ss_pred             CCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC---CCCCCceeeeeecC-CC
Q 012699          178 SSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT---TDAFPSVLDLKCSP-VE  248 (458)
Q Consensus       178 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~  248 (458)
                      +...     ........|...+.++.|.|.++..|++|+.|++|++||+.+++.+..+..   ..+...+.++.+++ ++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence            5321     112233456778999999977778899999999999999999988776632   23446899999987 78


Q ss_pred             CeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce
Q 012699          249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ  327 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  327 (458)
                      ..+++++.|             |.|++||++. .+....+  .+|...|.+++|+|++++|++|+.||.|++||+++++.
T Consensus       219 ~~l~sgs~D-------------~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          219 NMFISGSCD-------------TTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             CEEEEEETT-------------SCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred             CEEEEEECC-------------CeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence            899999988             5999999984 4555554  47888999999999999999999999999999999988


Q ss_pred             eeeeeCCCC-------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          328 ITGWPAHDS-------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       328 ~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +..+..+..       .|.+++|+|+|++|++++.||.|++||+...+.......     ....|...|.+++|+|+|++
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~h~~~v~~l~~s~dg~~  358 (380)
T 3iz6_a          284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-----LQNSHEGRISCLGLSSDGSA  358 (380)
T ss_dssp             EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC-----SCSSCCCCCCEEEECSSSSE
T ss_pred             EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec-----ccCCCCCceEEEEECCCCCE
Confidence            887765432       489999999999999999999999999987655443211     12367888999999999999


Q ss_pred             EEEEeCCccEEEEEccCCCc
Q 012699          401 LLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       401 l~~~~~~~~i~i~~~~~~~~  420 (458)
                      |++|+.|+.|++|++.+...
T Consensus       359 l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          359 LCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             EEEECTTSCEEEEECCSSSS
T ss_pred             EEEeeCCCCEEEEecCCCcc
Confidence            99999999999999987643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.7e-45  Score=322.45  Aligned_cols=291  Identities=15%  Similarity=0.232  Sum_probs=249.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..++|.+|.+.|++++|+|++++|++++.||+|++||+.++....  ....+..+|.+++|+ +++++|++|+.|+.|+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGKFI-ARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEE-GGGTEEEEEETTSEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--EeeccCCcEEEEEEe-CCCCEEEEECCCCEEE
Confidence            4667899999999999999999999999999999999998876543  334567789999999 6788999999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +||+.+++.+..+..+.  ..|.+++|+|+++++++++.|             |.|++||++++...... +.+|...|.
T Consensus        81 vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D-------------~~v~lWd~~~~~~~~~~-~~~h~~~v~  144 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQT-FEGHEHFVM  144 (304)
T ss_dssp             EEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETT-------------SCEEEEEGGGTTEEEEE-ECCCCSCEE
T ss_pred             EEECCCCcEEEEEeCCC--CcEEEEEEcCCCCEEEEECCC-------------CeEEEEECCCCcchhhh-hcccCCcEE
Confidence            99999999988887665  689999999999999999998             59999999887444322 357888999


Q ss_pred             EEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          298 SLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       298 ~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      +++|+| ++.+|++|+.|+.|++||++++.+...+. .|...+..+.|+|  ++++|++++.|++|++||+++.......
T Consensus       145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (304)
T ss_dssp             EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence            999999 67899999999999999998877666554 5668899999987  7789999999999999999976543322


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC--eEEEecCCCc
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP--MFLTGSADHS  451 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~  451 (458)
                               ..|...|..++|+|++++|++++.|+.|++||+.+.+....+..|...+.+++|+|++.  ++++|+.|| 
T Consensus       225 ---------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-  294 (304)
T 2ynn_A          225 ---------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-  294 (304)
T ss_dssp             ---------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-
T ss_pred             ---------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-
Confidence                     25777899999999999999999999999999999887777778999999999999986  577777664 


Q ss_pred             EEEEeC
Q 012699          452 VQVMSL  457 (458)
Q Consensus       452 v~iw~l  457 (458)
                      +.+|++
T Consensus       295 ~~~~~~  300 (304)
T 2ynn_A          295 FTVLSL  300 (304)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            677765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-45  Score=332.22  Aligned_cols=288  Identities=17%  Similarity=0.244  Sum_probs=232.4

Q ss_pred             ccCCCCeEEEEeCCCCCEEEEEeC------CCcEEEEecCCCCCCCc--cccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          144 LGHTSPISCCRFSSSGNNIASASV------DGTVRIWTYDSSTPASR--NATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      .+|...|++++|+|||++|++|+.      |++|++|+..++.....  .....+...|.+++|+ +++. +++++.||+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~d~~-~l~~s~dg~  116 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV-SEKG-ILVASDSGA  116 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE-TTTE-EEEEETTSC
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc-CCCC-EEEEECCCE
Confidence            479999999999999999999997      77899999877654322  2234567789999999 4554 566788999


Q ss_pred             EEEEEcCCCceeeec--cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          216 IKAWNVDAKRVVCDL--NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       216 i~~wd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      |++||+.+++.....  ....+...|.+++|+|+++.+++++.+             |.|++||+++++....+.  .|.
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~--~h~  181 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYN--AHS  181 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCS
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEc--CCC
Confidence            999999988755432  233455789999999999999999988             599999999998888774  678


Q ss_pred             CcEEEEEEccCCC-EEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCe
Q 012699          294 PAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       294 ~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                      ..|.+++|+|++. ++++++.||.|++||++++++...+.  .|...+.+++|+|+ +.+|++++.|+.|++||+++.+.
T Consensus       182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence            8999999999874 78999999999999999988776554  56778999999997 46889999999999999987654


Q ss_pred             eEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECC-CCCeEEEec
Q 012699          370 VLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP-TLPMFLTGS  447 (458)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~  447 (458)
                      ...         ...+...|.+++|+|++ ++|++++.|++|+|||+++++ +....+|.+.|++++|+| ++.+|++++
T Consensus       262 ~~~---------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s  331 (357)
T 4g56_B          262 AQT---------SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVG  331 (357)
T ss_dssp             CEE---------ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEE---------EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEc
Confidence            332         23567789999999987 579999999999999998874 445668999999999999 788999999


Q ss_pred             CCCcEEEEeCC
Q 012699          448 ADHSVQVMSLS  458 (458)
Q Consensus       448 ~dg~v~iw~l~  458 (458)
                      .||+|++|+++
T Consensus       332 ~Dg~v~iW~~~  342 (357)
T 4g56_B          332 WDHKVLHHHLP  342 (357)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCeEEEEECC
Confidence            99999999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=332.21  Aligned_cols=315  Identities=17%  Similarity=0.177  Sum_probs=248.0

Q ss_pred             HhhccccCCCc-ceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           15 AQLSRLKNNSE-TIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        15 ~~~~~l~~h~~-~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      +.+.+|.+|.. .|.+++| +|+|++||+|+.|++++||+.+.+...                          .      
T Consensus         6 ~~~~~~~~h~~~~v~~l~~-sp~g~~las~~~D~~i~iw~~~~~~~~--------------------------~------   52 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAW-NPAGTLLASCGGDRRIRIWGTEGDSWI--------------------------C------   52 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEE-CTTSSCEEEEETTSCEEEEEEETTEEE--------------------------E------
T ss_pred             EEeeeecCCCCCcEEEEEE-CCCCCEEEEEcCCCeEEEEEcCCCcce--------------------------e------
Confidence            45778999998 8999999 999999999999999999986544100                          0      


Q ss_pred             cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699           94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI  173 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  173 (458)
                                                                   ......+|.+.|.+++|+|++++|++|+.|+++++
T Consensus        53 ---------------------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i   87 (345)
T 3fm0_A           53 ---------------------------------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI   87 (345)
T ss_dssp             ---------------------------------------------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ---------------------------------------------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence                                                         11123589999999999999999999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCCe
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      |++.............|...|.+++|+ +++++|++++.|+.|++||+.++..   ...+..+  ...|.+++|+|++.+
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC--CSCEEEEEECSSSSC
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc--CCCeEEEEECCCCCE
Confidence            998876543233345677899999999 6889999999999999999987643   3344443  368999999999999


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-----
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG-----  325 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----  325 (458)
                      +++++.|             +.|++||.++++......+.+|...|.+++|+|++++|++|+.|+.|++||....     
T Consensus       165 l~s~s~d-------------~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          165 LASASYD-------------DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             EEEEETT-------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred             EEEEeCC-------------CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence            9999988             5999999998776655566789899999999999999999999999999996432     


Q ss_pred             ----------ceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          326 ----------LQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       326 ----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                                +++..+.+ |...|.+++|+|++..|++++.|+.|++|+.....................|...|.+++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  311 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW  311 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence                      22334444 8889999999999999999999999999998754321000000000112357888999999


Q ss_pred             ccCC-CEEEEEeCCccEEEEEccCCCcccc
Q 012699          395 DVNG-RRLLVTSGSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       395 s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~  423 (458)
                      +|++ .+|++++.||+|++|++...+.+..
T Consensus       312 ~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          312 NPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             CSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             eCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            9998 5999999999999999988765443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-45  Score=338.25  Aligned_cols=347  Identities=17%  Similarity=0.233  Sum_probs=275.2

Q ss_pred             hccccC--CCcceeeeeeccCCCc-eeeeeecCcceEEecc----ccccccccceeeeeccCCceeeeeCCccceeEeec
Q 012699           17 LSRLKN--NSETIKYANIGQTKNS-TLASGVNEESLLLSTN----SSEACATTATHMGSAEMGQTWASSRPALSRFATNM   89 (458)
Q Consensus        17 ~~~l~~--h~~~i~~~~~~s~~~~-~l~s~~~d~~~~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (458)
                      ...+..  |...|++++| +|+|+ +||+|+.|+.+++|+.    ..+...                             
T Consensus        36 ~~~~~~~~~~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------------------------   85 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTW-NPLDESILAYGEKNSVARLARIVETDQEGKKY-----------------------------   85 (425)
T ss_dssp             CEECEEEEECSCCSEEEE-CSSCTTEEEEEETBTEEEEEEEEEC------C-----------------------------
T ss_pred             hhheeeeeccCceEEEEE-CCCCCcEEEEecCCceEEEEEEecccCCcccc-----------------------------
Confidence            344554  5589999999 99999 9999999999999998    544211                             


Q ss_pred             cCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCC
Q 012699           90 SGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDG  169 (458)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  169 (458)
                              |++....     .+..       +..               ......+|.+.|++++|+|++++|++++.||
T Consensus        86 --------~~~~~~~-----~~~~-------~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  130 (425)
T 1r5m_A           86 --------WKLTIIA-----ELRH-------PFA---------------LSASSGKTTNQVTCLAWSHDGNSIVTGVENG  130 (425)
T ss_dssp             --------EEEEEEE-----EEEC-------CCC---------------CC------CBCEEEEEECTTSSEEEEEETTS
T ss_pred             --------ccccccc-----cccc-------ccc---------------ccccccCCCCceEEEEEcCCCCEEEEEeCCC
Confidence                    1110000     0000       000               0012346889999999999999999999999


Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc-----------
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS-----------  238 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-----------  238 (458)
                      .|++||. ++...  .....+...|.+++|+ +++++|++++.||.|++||+.+++....+..+.....           
T Consensus       131 ~i~i~~~-~~~~~--~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (425)
T 1r5m_A          131 ELRLWNK-TGALL--NVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG  206 (425)
T ss_dssp             CEEEEET-TSCEE--EEECCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred             eEEEEeC-CCCee--eeccCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence            9999993 33332  2334577899999999 6788999999999999999999998887776542211           


Q ss_pred             --eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          239 --VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       239 --v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                        +.++.|+|++. +++++.+             |.|++||+++++....+.  .|...|.+++|+|++++|++++.||.
T Consensus       207 ~~~~~~~~~~~~~-~~~~~~~-------------g~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          207 SLGVDVEWVDDDK-FVIPGPK-------------GAIFVYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             CCBSCCEEEETTE-EEEECGG-------------GCEEEEETTCSSCSEEEC--CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ceeeEEEEcCCCE-EEEEcCC-------------CeEEEEEcCCCceeeeec--cCCCceEEEEECCCCCEEEEEcCCCE
Confidence              88899998755 6666666             599999999988877764  67788999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                      |++||+++++.+..+..|...|.+++|+|++ ++++++.|+.|++||+.+........         .+...+.+++|+|
T Consensus       271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~i~~~~~s~  340 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---------VDGVPIFAGRISQ  340 (425)
T ss_dssp             EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---------CTTCCEEEEEECT
T ss_pred             EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---------cCCccEEEEEEcC
Confidence            9999999999999999999999999999999 99999999999999998765443221         3566799999999


Q ss_pred             CCCEEEEEeCCccEEEEEccCCC--------------------cccccCCCCC--cEEEEEECCCCCeEEEecCCCcEEE
Q 012699          397 NGRRLLVTSGSVRAPIYQVRGHA--------------------SGMRTLPHGA--AITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       397 ~g~~l~~~~~~~~i~i~~~~~~~--------------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      ++++|++++.++.|++|++.+..                    ....+.+|..  .|++++|+|++++|++++.||.|++
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  420 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV  420 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred             CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence            99999999999999999998776                    5556667866  9999999999999999999999999


Q ss_pred             EeCC
Q 012699          455 MSLS  458 (458)
Q Consensus       455 w~l~  458 (458)
                      |+++
T Consensus       421 w~~~  424 (425)
T 1r5m_A          421 VAIP  424 (425)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3e-44  Score=319.63  Aligned_cols=294  Identities=20%  Similarity=0.364  Sum_probs=251.8

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ...++.+|.++|++++|+|++++|++++.||.|++|++.+++...  ....|...|.+++|+ +++++|++++.|+.|++
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWS-SDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhccCCCceEEEEEc-CCCCEEEEECCCCEEEE
Confidence            566788999999999999999999999999999999998776543  334577889999999 68899999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||+++++.+..+..+.  ..+.++.|+|++..+++++.+             |.|++||+++++....+.  .|...|.+
T Consensus        92 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~--~~~~~v~~  154 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFD-------------ESVRIWDVKTGKCLKTLP--AHSDPVSA  154 (312)
T ss_dssp             EETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETT-------------SCEEEEETTTCCEEEEEC--CCSSCEEE
T ss_pred             EECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCEEEEEec--CCCCcEEE
Confidence            9999999888887665  689999999999999999988             599999999988877764  67788999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      ++|+|++++|++++.||.|++||+++++.+..+. .+..++..++|+|++++|++++.|+.|++||+++.+.......  
T Consensus       155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--  232 (312)
T 4ery_A          155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG--  232 (312)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS--
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe--
Confidence            9999999999999999999999999988877664 5567899999999999999999999999999997654432211  


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec--CCCcEEEE
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS--ADHSVQVM  455 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iw  455 (458)
                          .......+......+++++|++++.|+.|++||+.+.+....+.+|...|.+++|+|++++|++++  .|++|++|
T Consensus       233 ----~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W  308 (312)
T 4ery_A          233 ----HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW  308 (312)
T ss_dssp             ----SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred             ----cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence                111112223333446889999999999999999999888778889999999999999999999986  69999999


Q ss_pred             eCC
Q 012699          456 SLS  458 (458)
Q Consensus       456 ~l~  458 (458)
                      +.+
T Consensus       309 ~~d  311 (312)
T 4ery_A          309 KSD  311 (312)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.4e-44  Score=323.96  Aligned_cols=285  Identities=15%  Similarity=0.237  Sum_probs=244.9

Q ss_pred             ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      .+|.++|++++|+|++++|++++ ||.|++||+.++.........   .+...|.+++|+ +++++|++++.||.|++||
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEE
Confidence            37999999999999999999999 999999999877644322221   467889999999 6888999999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      +.+++.........+...+.+++|+|+++.+++++.+             |.|++||+++++....+.  .|...+.+++
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~v~~~d~~~~~~~~~~~--~~~~~i~~~~  190 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQ--GHTDGASCID  190 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEE
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-------------CcEEEEeCCCCceeeeee--cccCceEEEE
Confidence            9988743333333334689999999999999999888             599999999988877764  5778899999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      |+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||+.+.....         
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------  260 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------  260 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------
Confidence            99999999999999999999999998887764 78889999999999999999999999999998764321         


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                       ...+...+.+++|+|++++|++++.++.|++|++.+.+.. ....|...|.+++|+|++++|++++.||.|++|++
T Consensus       261 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          261 -LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence             2346778999999999999999999999999999987654 44568899999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.5e-45  Score=327.89  Aligned_cols=292  Identities=17%  Similarity=0.250  Sum_probs=251.1

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      ++|++|...|.+++| ++++++|++|+.|+++++|+...+.....+.    ........+.+++++.++++++.|+.+++
T Consensus        49 ~~l~gH~~~v~~~~~-s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           49 RTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHAIP----LRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             EEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             eeecCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEECCCCCcceEee----cCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            357899999999999 9999999999999999999988776542222    12233455777788899999999999999


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                      |++.....                              .......+.+|.+.|.++.|++++. +++++.|++|++||+.
T Consensus       124 w~~~~~~~------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~  172 (340)
T 1got_B          124 YNLKTREG------------------------------NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE  172 (340)
T ss_dssp             EETTTCSB------------------------------SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT
T ss_pred             EECccCCC------------------------------cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC
Confidence            99865220                              0114556789999999999998874 8899999999999998


Q ss_pred             CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecc
Q 012699          178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS  257 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  257 (458)
                      +++...  ....|...|.+++|+ +++.++++|+.|+.|++||++++.....+..+.  ..|.+++|+|++..+++++.|
T Consensus       173 ~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          173 TGQQTT--TFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             TTEEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEE--EEcCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc--CCEEEEEEcCCCCEEEEEcCC
Confidence            876543  334577889999999 678899999999999999999999888887665  689999999999999999988


Q ss_pred             cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCC
Q 012699          258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSA  337 (458)
Q Consensus       258 ~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~  337 (458)
                                   |.|++||+++++....+....+...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..+
T Consensus       248 -------------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~  314 (340)
T 1got_B          248 -------------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR  314 (340)
T ss_dssp             -------------SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             -------------CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc
Confidence                         5999999999888877765555567999999999999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          338 ISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       338 v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      |.+++|+|++.+|++++.|+.|++||
T Consensus       315 v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          315 VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.1e-45  Score=329.03  Aligned_cols=296  Identities=17%  Similarity=0.256  Sum_probs=252.1

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      +.|.+|...|+|++| ++++++||||+.|+++++||...+.....+.    .+.....++.+++++.++++++.|+.+++
T Consensus        58 ~~l~gH~~~V~~~~~-s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~----~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----MPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             EEEECCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             EEecCCCCeEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCcceEEe----cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            467899999999999 9999999999999999999987765442221    22333455777888999999999999999


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD  177 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~  177 (458)
                      |++.......                .            ......+.+|.+.|.+++|+|+++.|++++.|++|++||+.
T Consensus       133 ~~~~~~~~~~----------------~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~  184 (354)
T 2pbi_B          133 YPLTFDKNEN----------------M------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE  184 (354)
T ss_dssp             EECCCCTTCC----------------S------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             EEEecccccc----------------c------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Confidence            9986532100                0            01334567899999999999999999999999999999999


Q ss_pred             CCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          178 SSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       178 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      +++...  ....|...|.+++|+|. ++.+|++|+.||.|++||+++++++..+..+.  ..|.+++|+|++..+++++.
T Consensus       185 ~~~~~~--~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          185 SGQLLQ--SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             TCCEEE--EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred             CCeEEE--EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeC
Confidence            887543  33457788999999864 46899999999999999999999988887655  68999999999999999998


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                      |             +.|++||++..+....+....+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|.+
T Consensus       261 D-------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~  327 (354)
T 2pbi_B          261 D-------------ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN  327 (354)
T ss_dssp             T-------------SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred             C-------------CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence            8             599999999988777775445556799999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          337 AISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      .|.+++|+|++++|++++.|++|++|+
T Consensus       328 ~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          328 RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-44  Score=324.12  Aligned_cols=299  Identities=17%  Similarity=0.257  Sum_probs=233.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-cc-CCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-IY-CGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      +.++.+.+|.++|++++|+|+  +|++|+.|++|++||+..+........ .. |...|.+++|+ +++++|++++.|++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D~~   81 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFDST   81 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETTSC
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCCCc
Confidence            367788999999999999988  999999999999999987543211111 23 77889999999 67889999999999


Q ss_pred             EEEEEcCC-------CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ce-eEE
Q 012699          216 IKAWNVDA-------KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KA-MTV  286 (458)
Q Consensus       216 i~~wd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~-~~~  286 (458)
                      |++||++.       .+....+..+.  ..|.+++|+|+++++++++.|             +.|++||++.. .. ...
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp~g~~las~s~D-------------~~v~iwd~~~~~~~~~~~  146 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSNDGYYLATCSRD-------------KSVWIWETDESGEEYECI  146 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETT-------------SCEEEEECCTTCCCCEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECCCCCEEEEEeCC-------------CEEEEEeccCCCCCeEEE
Confidence            99999853       23444455444  789999999999999999998             59999999532 21 122


Q ss_pred             eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC--ceeeeeeCCCCCeEEEEEcCC--CCEEEEecCCCeEEEE
Q 012699          287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG--LQITGWPAHDSAISSILFGPD--ETSIFSLGSDGKIIEW  362 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw  362 (458)
                      ..+.+|...|.+++|+|++.+|++|+.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++.|++|++|
T Consensus       147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            234578889999999999999999999999999998766  678889999999999999998  6789999999999999


Q ss_pred             eccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC--cccc-cCCCCC-cEEEEE
Q 012699          363 SLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA--SGMR-TLPHGA-AITTVD  435 (458)
Q Consensus       363 d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~--~~~~-~~~h~~-~v~~~~  435 (458)
                      |+.....   ..+.  + .......|...|.+++|++++ +|++++.|+.|++|+..++.  .... ..+|.. .|++++
T Consensus       227 ~~~~~~~~~~~~~~--~-~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~  302 (330)
T 2hes_X          227 KYMGDDEDDQQEWV--C-EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK  302 (330)
T ss_dssp             EEEEECTTSCEEEE--E-EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred             EecCCCccccceeE--E-eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence            9975321   0000  0 000112367789999999765 89999999999999997653  2222 347877 899999


Q ss_pred             ECC--CCCeEEEecCCCcEEEEeCC
Q 012699          436 WHP--TLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       436 ~~~--~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |+|  ++++||+|+.||+|+||+++
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC-
T ss_pred             EecCCCceEEEEecCCCcEEEEEec
Confidence            999  68899999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.5e-45  Score=329.54  Aligned_cols=305  Identities=13%  Similarity=0.124  Sum_probs=238.1

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      ...+|...|++++| +|||++||+|+.|. +++||                                       +++++|
T Consensus        37 ~p~~H~~~V~~v~f-SpDG~~las~s~d~-~~~wd---------------------------------------~~v~~~   75 (357)
T 4g56_B           37 APACMEVQIGAVRY-RRDGALLLAASSLS-SRTWG---------------------------------------GSIWVF   75 (357)
T ss_dssp             ---CCCSEEEEEEE-CSSSCEEEEEECSS-SSSCC---------------------------------------EEEEEE
T ss_pred             CcccccCCEEEEEE-CCCCCEEEEEcCCC-Ccccc---------------------------------------CeEEEE
Confidence            44679999999999 99999999999764 35553                                       223344


Q ss_pred             ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699           99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS  178 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  178 (458)
                      +.....                +...              ......+|...|++++|+|+++ +++++.||+|++||+.+
T Consensus        76 ~~~~~~----------------~~~~--------------~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           76 KDPEGA----------------PNES--------------LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILE  124 (357)
T ss_dssp             SSCC-------------------CGG--------------GCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC----
T ss_pred             ECCCCC----------------ccee--------------EecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccc
Confidence            332211                0000              1123347899999999999985 55678899999999988


Q ss_pred             CCCCCcc--ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEee
Q 012699          179 STPASRN--ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAA  255 (458)
Q Consensus       179 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~  255 (458)
                      ++.....  ....|...|.+++|+ +++++|++++.|+.|++||+++++.+..+..+.  ..|.+++|+|++. .+++++
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS--SEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTCSSCEEEEE
T ss_pred             cceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCceeeeec
Confidence            7654322  233567899999999 788999999999999999999999998887665  6899999999886 677888


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      .+             |.|++||++++++...+....+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|
T Consensus       202 ~d-------------g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~  268 (357)
T 4g56_B          202 ED-------------GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH  268 (357)
T ss_dssp             TT-------------SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC
T ss_pred             cC-------------CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc
Confidence            77             5999999999988887777777788999999997 568999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEE
Q 012699          335 DSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPI  412 (458)
Q Consensus       335 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i  412 (458)
                      ...|++++|+|++ ++|++++.|++|++||+++.+...          ...|...|++++|+| ++++|++++.|++|++
T Consensus       269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~----------~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR----------DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH  338 (357)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----------ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence            9999999999987 579999999999999998764322          125778899999999 8999999999999999


Q ss_pred             EEccCCCcc
Q 012699          413 YQVRGHASG  421 (458)
Q Consensus       413 ~~~~~~~~~  421 (458)
                      |++....+.
T Consensus       339 W~~~~~~~~  347 (357)
T 4g56_B          339 HHLPSEGRT  347 (357)
T ss_dssp             EECC-----
T ss_pred             EECCCCCcc
Confidence            999765443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-44  Score=363.00  Aligned_cols=379  Identities=14%  Similarity=0.142  Sum_probs=304.3

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..+.|.+|...|++++| +|+|++|++|+.|+.++||+...+.....+.    ...+....+.+++++.++++++.|+.+
T Consensus         5 ~~~~~~~h~~~v~~i~~-sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDF-HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ----VTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CEEEEEEECSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEE----CCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             cceeeecCCCceEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEEEEe----cCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            45688999999999999 9999999999999999999998876543222    123334456667778899999999999


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                      ++|++....                                  .+..+.+|.+.|++++|+|++++|++++.||+|++||
T Consensus        80 ~vw~~~~~~----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           80 RVFNYNTGE----------------------------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEEETTTCC----------------------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEEECCCCc----------------------------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence            999986532                                  5567789999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC--CCCeEEE
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP--VEPIFVS  253 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~  253 (458)
                      +.++... ......+...|.+++|+|.++..+++++.||.|++||+.++.....+..+. ...+..++|+|  ++..+++
T Consensus       126 ~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~  203 (814)
T 3mkq_A          126 WENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMIT  203 (814)
T ss_dssp             GGGTSEE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEE
T ss_pred             CCCCceE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEE
Confidence            9876332 223345678899999996588999999999999999999887766665443 25789999999  8999999


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  333 (458)
                      ++.+             |.|++||+.+++....+.  .|...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus       204 ~~~d-------------g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  268 (814)
T 3mkq_A          204 ASDD-------------LTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV  268 (814)
T ss_dssp             ECTT-------------SEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             EeCC-------------CEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence            9888             599999999988877775  5677899999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCE-EEEecCCCeEEEEeccCCCeeEEeecCC---------c-------------------------
Q 012699          334 HDSAISSILFGPDETS-IFSLGSDGKIIEWSLQNQGQVLWTRNCS---------R-------------------------  378 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~-------------------------  378 (458)
                      |...+.+++|+|++.. +++++.++.+.+|++.............         .                         
T Consensus       269 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (814)
T 3mkq_A          269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQ  348 (814)
T ss_dssp             SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCC
T ss_pred             CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceee
Confidence            9999999999999873 3445557778999987543222111000         0                         


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ......+...+.+++|+|+|+++++++ ++.+.+|++....     ..+.+.+.+++|+|++++|++++.||.|++|+
T Consensus       349 ~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~-----~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~  420 (814)
T 3mkq_A          349 TKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR-----NKAFGKCQDFVWGPDSNSYALIDETGQIKYYK  420 (814)
T ss_dssp             CEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE-----EEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred             eecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc-----ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence            000122345678999999999999988 8999999975432     12456788889999988888888888898886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-45  Score=341.69  Aligned_cols=375  Identities=16%  Similarity=0.206  Sum_probs=278.2

Q ss_pred             CCcceeeeeeccCCCc-eeeee----------ecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccC
Q 012699           23 NSETIKYANIGQTKNS-TLASG----------VNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSG   91 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~-~l~s~----------~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (458)
                      +...|.+++| +|+|+ +|++|          +.|+.+++|+...+.....+...  ........+.+++++.+|++++.
T Consensus        11 ~~~~v~~~~~-sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A           11 EFSRTATFAW-SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             EEEESCBCCB-CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEES
T ss_pred             hhhhcceEee-CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEcc
Confidence            4567999999 99997 99999          89999999999887533111111  12334455777778899999999


Q ss_pred             CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCc
Q 012699           92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGT  170 (458)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~  170 (458)
                      |+.+++|++.....                 +             ...+..+.+|.+.|++++|+|+ +++|++++.|++
T Consensus        88 dg~v~vw~~~~~~~-----------------~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~  137 (416)
T 2pm9_A           88 NGSLELYSTNEANN-----------------A-------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE  137 (416)
T ss_dssp             SSCEEEECCSSTTS-----------------C-------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred             CCeEEEeecccccc-----------------c-------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence            99999999865220                 0             0145567899999999999998 899999999999


Q ss_pred             EEEEecCCCC------CCCc-cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC----CCce
Q 012699          171 VRIWTYDSST------PASR-NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA----FPSV  239 (458)
Q Consensus       171 v~iwd~~~~~------~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~v  239 (458)
                      |++||+.+.+      .... .....+...|.+++|+|.++.++++++.||.|++||+++++....+..+..    ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999998876      2211 122356788999999965588999999999999999999998888776531    3689


Q ss_pred             eeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecC-CCCCcEEEEEEcc-CCCEEEEEecCC
Q 012699          240 LDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLG-EDPPAITSLCFNH-NGKILAASAVDG  315 (458)
Q Consensus       240 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg  315 (458)
                      .+++|+|++ ..+++++.++.          .+.|++||++++ .+...+  . .|...|.+++|+| ++++|++++.||
T Consensus       218 ~~~~~~~~~~~~l~~~~~d~~----------~~~i~~~d~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~l~s~~~dg  285 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATATGSDN----------DPSILIWDLRNANTPLQTL--NQGHQKGILSLDWCHQDEHLLLSSGRDN  285 (416)
T ss_dssp             EEEEECSSCTTEEEEEECCSS----------SCCCCEEETTSTTSCSBCC--CSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred             EEEEECCCCCCEEEEEECCCC----------CceEEEEeCCCCCCCcEEe--ecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence            999999997 57777776610          029999999986 344433  3 6778899999999 899999999999


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      .|++||+++++++..+..|...|.+++|+|++ .+|++++.|+.|++||+.+.........       ...........+
T Consensus       286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~  358 (416)
T 2pm9_A          286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE-------TETKQQESETDF  358 (416)
T ss_dssp             EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred             CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccc-------ccccccCCcccc
Confidence            99999999999999999999999999999998 8999999999999999987543211000       001111222333


Q ss_pred             ccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          395 DVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       395 s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+.+..++.++..+.+.   +      .....|..++++++|+|+|++|++++.||.|+||+++
T Consensus       359 ~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          359 WNNVSREESKEKPSVFH---L------QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             --------CCSCCCSSC---C------CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             ccccccccccccccccc---c------cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence            33444443333222111   1      1112367788899999999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.1e-44  Score=315.44  Aligned_cols=292  Identities=15%  Similarity=0.187  Sum_probs=246.1

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..++|.+|...|++++| +|++++|++|+.|+++++|+.+++.                                     
T Consensus         5 ~~~~~~~h~~~V~~~~f-sp~~~~l~s~~~dg~v~lWd~~~~~-------------------------------------   46 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDF-HPTEPWVLTTLYSGRVELWNYETQV-------------------------------------   46 (304)
T ss_dssp             CEEEEEEECSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTE-------------------------------------
T ss_pred             eEEeecCCCCceEEEEE-CCCCCEEEEEcCCCcEEEEECCCCc-------------------------------------
Confidence            45679999999999999 9999999999999999999976551                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                                                                 .++.+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus        47 -------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A           47 -------------------------------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             -------------------------------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             -------------------------------------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence                                                       3345667899999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecC-CCCeEEE
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSP-VEPIFVS  253 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~  253 (458)
                      +.+++...  ....|...|.+++|+ +++.+|++|+.||+|++||++++. ....+..+.  ..|.+++|+| ++..+++
T Consensus        84 ~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~s  158 (304)
T 2ynn_A           84 YNTGEKVV--DFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFAS  158 (304)
T ss_dssp             TTTCCEEE--EEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEE
T ss_pred             CCCCcEEE--EEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEE
Confidence            99887643  344577899999999 678899999999999999999874 444555544  6899999999 5788999


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc--CCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--NGKILAASAVDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~  331 (458)
                      ++.|             |.|++||+++......+. ..+...+..+.|+|  ++.+|++|+.|+.|++||+++++++..+
T Consensus       159 gs~D-------------~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~  224 (304)
T 2ynn_A          159 GCLD-------------RTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL  224 (304)
T ss_dssp             EETT-------------SEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EeCC-------------CeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence            9988             599999999887766664 34557799999987  6789999999999999999999999999


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC--EEEEEeCCcc
Q 012699          332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR--RLLVTSGSVR  409 (458)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~  409 (458)
                      .+|...|.+++|+|++++|++++.||+|++||+.+.+.....         ..+...+.+++++|++.  ++++|+.+| 
T Consensus       225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~asg~~~g-  294 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL---------NVGLERSWCIATHPTGRKNYIASGFDNG-  294 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------CCSSSSEEEEEECTTCGGGCEEEEETTE-
T ss_pred             CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec---------cCCCccEEEEEECCCCCceEEEEecCCc-
Confidence            999999999999999999999999999999999976544322         23556789999999885  466666555 


Q ss_pred             EEEEEccC
Q 012699          410 APIYQVRG  417 (458)
Q Consensus       410 i~i~~~~~  417 (458)
                      +.+|++..
T Consensus       295 ~~~~~~~~  302 (304)
T 2ynn_A          295 FTVLSLGN  302 (304)
T ss_dssp             EEEEECC-
T ss_pred             eEEEEecc
Confidence            77777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-43  Score=314.08  Aligned_cols=303  Identities=18%  Similarity=0.274  Sum_probs=246.5

Q ss_pred             hhccccCCCcceeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           16 QLSRLKNNSETIKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ...+|.+|...|++++| ++++ ++|+||+.|+++++|+......                        .          
T Consensus         9 l~~~l~gH~~~V~~l~~-~~~~~~~l~s~s~D~~v~~W~~~~~~~------------------------~----------   53 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLAT-SAGQPNLLLSASRDKTLISWKLTGDDQ------------------------K----------   53 (319)
T ss_dssp             EEEEECCCSSCEEEEEE-CSSCTTEEEEEETTSEEEEEEEEEETT------------------------E----------
T ss_pred             EEEEEccccceEEEEEc-cCCCccEEEEecCCccEEEecCCCCCc------------------------c----------
Confidence            34588999999999999 7754 8999999999999998754310                        0          


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                               ....+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus        54 -----------------------------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           54 -----------------------------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             -----------------------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             -----------------------------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence                                                     001456788999999999999999999999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC------
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE------  248 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~------  248 (458)
                      |+.+++...  ....|...|.+++|+ +++.+|++++.|++|++||++. +.+..+..+.  ..+.++.+.|..      
T Consensus        93 d~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~--~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           93 DVATGETYQ--RFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKG-QCLATLLGHN--DWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             ETTTTEEEE--EEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTS-CEEEEECCCS--SCEEEEEECCC------C
T ss_pred             ECCCCCeeE--EEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCC-CeEEEEeccC--CcEEEEEEccCCCCCCCc
Confidence            998876543  345678899999999 7888999999999999999974 4555555444  679999999854      


Q ss_pred             CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee
Q 012699          249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  328 (458)
                      ..+++++.+             +.|++||+++.+....+  .+|...|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus       167 ~~l~s~~~d-------------~~i~~wd~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          167 VTIISAGND-------------KMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             CEEEEEETT-------------SCEEEEETTTTEEEEEE--CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             cEEEEEeCC-------------CEEEEEECCcchhheee--cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            478888887             59999999988777665  478889999999999999999999999999999999998


Q ss_pred             eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                      ..+.. ...|.+++|+|++.+|++++.+ .+++|++......... ..........+...+.+++|+|||++|++|+.|+
T Consensus       232 ~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          232 YTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDL-RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEE-CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeecc-CccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            88875 4689999999999999887755 5999999864333222 1111112223456789999999999999999999


Q ss_pred             cEEEEEccCC
Q 012699          409 RAPIYQVRGH  418 (458)
Q Consensus       409 ~i~i~~~~~~  418 (458)
                      .|++|++.+.
T Consensus       309 ~i~vWd~~t~  318 (319)
T 3frx_A          309 VIRVWQVMTA  318 (319)
T ss_dssp             CEEEEEEEEC
T ss_pred             eEEEEEEeec
Confidence            9999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8e-44  Score=326.78  Aligned_cols=293  Identities=19%  Similarity=0.335  Sum_probs=244.0

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc----------------cCCCceEEEEEecCCCeEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI----------------YCGTEIMSLEWECKSDRLLL  208 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~  208 (458)
                      +|.+.|++++|+|+|++||+|+ ++++++|++.+++........                .+...|.+++|+ +++++|+
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEE
Confidence            6999999999999999999986 789999999887654221110                112248999999 7889999


Q ss_pred             EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699          209 IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP  288 (458)
Q Consensus       209 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~  288 (458)
                      +|+.|+.|++||+.+++....+..+.  ..|.+++|+|++..+++++.|             +.|++||+++++....+.
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEE
Confidence            99999999999999999888877665  689999999999999999988             599999999998877775


Q ss_pred             cCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee-------eCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          289 LGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW-------PAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                         +...+.+++|+| ++++|++|+.||.|++||+++++.+..+       .+|...|.+++|+|++++|++++.|+.|+
T Consensus       205 ---~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          205 ---IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             ---CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ---cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence               335699999999 8999999999999999999998887766       57999999999999999999999999999


Q ss_pred             EEeccCCCeeEEeec---CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699          361 EWSLQNQGQVLWTRN---CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH  437 (458)
Q Consensus       361 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~  437 (458)
                      +||+++.........   .........|...|.+++|+|++++|++++.|+.|++||+.++.....+.+|...|.+++|+
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~  361 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  361 (393)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence            999986432211000   00011223577789999999999999999999999999999988777788999999999998


Q ss_pred             C------CCCeEEEecCCCcEEEEeC
Q 012699          438 P------TLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       438 ~------~~~~l~s~~~dg~v~iw~l  457 (458)
                      |      ++++|++|+.||+|+||++
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECcc
Confidence            6      6789999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.3e-43  Score=314.58  Aligned_cols=309  Identities=18%  Similarity=0.249  Sum_probs=239.8

Q ss_pred             hhccccCCCcceeeeee-----ccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699           16 QLSRLKNNSETIKYANI-----GQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS   90 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~-----~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (458)
                      ....|++|...|++++|     ..+++++|+||+.|+++++|+...+....                             
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-----------------------------   63 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-----------------------------   63 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-----------------------------
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-----------------------------
Confidence            35679999999999998     44589999999999999999875431000                             


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGT  170 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  170 (458)
                                                                  ........+.+|...|.+++|+|++.+|++|+.|++
T Consensus        64 --------------------------------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~   99 (343)
T 2xzm_R           64 --------------------------------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT   99 (343)
T ss_dssp             --------------------------------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred             --------------------------------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence                                                        000144567899999999999999999999999999


Q ss_pred             EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC--
Q 012699          171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE--  248 (458)
Q Consensus       171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  248 (458)
                      |++||+.+++...  ....|...|.+++|+ +++++|++++.|+.|++||+.............+...+.+++|+|++  
T Consensus       100 v~lwd~~~~~~~~--~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (343)
T 2xzm_R          100 LRLWDLRTGTTYK--RFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS  176 (343)
T ss_dssp             EEEEETTSSCEEE--EEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred             EEEEECCCCcEEE--EEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccc
Confidence            9999998876543  344578899999999 67889999999999999999854443333333455789999999987  


Q ss_pred             --------CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699          249 --------PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF  320 (458)
Q Consensus       249 --------~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~  320 (458)
                              ..+++++.+             |.|++||.. .+....+  ..|...|.+++|+|++++|++|+.||.|++|
T Consensus       177 ~~~~~~~~~~l~s~~~d-------------~~i~iwd~~-~~~~~~~--~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw  240 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWD-------------GRLKVWNTN-FQIRYTF--KAHESNVNHLSISPNGKYIATGGKDKKLLIW  240 (343)
T ss_dssp             CSCCCSSCCEEEEEETT-------------SEEEEEETT-TEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             ccccCCCCCEEEEEcCC-------------CEEEEEcCC-CceeEEE--cCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence                    678888887             599999943 4444444  4677899999999999999999999999999


Q ss_pred             eCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE-eecC---CcccCCCCCCCceeEEEEc
Q 012699          321 DMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW-TRNC---SRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       321 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~---~~~~~~~~~~~~v~~~~~s  395 (458)
                      |+.. ......+ .+...|.+++|+|++.++++ +.|+.|++||+.+...... ....   ........+...+.+++|+
T Consensus       241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          241 DILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             ESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             ECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            9954 3444443 35667999999999987765 4678899999987543211 1010   0111223567789999999


Q ss_pred             cCCCEEEEEeCCccEEEEEccCC
Q 012699          396 VNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      |+|++|++|+.||.|++|+++++
T Consensus       319 p~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          319 ALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCeEEEecCCceEEEEEEEcc
Confidence            99999999999999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-42  Score=311.91  Aligned_cols=293  Identities=16%  Similarity=0.259  Sum_probs=246.3

Q ss_pred             eeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          138 DFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      ++..+|+||++.|++++|+|+ +++|+||+.|++|+|||+...+...   ......|...|.+++|+ +++++|++++.|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s-~dg~~l~s~~~d  107 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-SDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC-CCCCEEEEEccc
Confidence            456789999999999999997 6899999999999999998765432   11234567899999999 788999999999


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +.|++|+..............  ..+....+.+++..+++++.+             +.+++||+....... .....|.
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~-~~~~~~~  171 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYT-VQDESHS  171 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEE-ECSSSCS
T ss_pred             ccceEEeecccceeeeecCCC--CceeEEEEeecCccceeecCC-------------CeEEEEEeCCCceEE-EEecccc
Confidence            999999999988777666554  578889999999999999988             599999998755443 3456788


Q ss_pred             CcEEEEEEccCC--CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699          294 PAITSLCFNHNG--KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       294 ~~i~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      ..+..++|++++  .++++++.|+.|++||+++++.+..+.+|.++|++++|+|++++|++++.|+.|++||+++.....
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~  251 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY  251 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee
Confidence            899999999864  578899999999999999999999999999999999999999999999999999999999865544


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc---------cCCCCCcEEEEEECCCCCe
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR---------TLPHGAAITTVDWHPTLPM  442 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~  442 (458)
                      ...          ....+..++|+|++.++ +++.|+.|++||+++......         ..+|...|++++|+|++++
T Consensus       252 ~~~----------~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          252 TLD----------GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             EEE----------CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             eec----------CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence            321          33468999999998765 456789999999987643322         2268899999999999999


Q ss_pred             EEEecCCCcEEEEeCC
Q 012699          443 FLTGSADHSVQVMSLS  458 (458)
Q Consensus       443 l~s~~~dg~v~iw~l~  458 (458)
                      |++|+.||.|+|||++
T Consensus       321 l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          321 LFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEEETTSCEEEEEEE
T ss_pred             EEEEeCCCEEEEEeCC
Confidence            9999999999999973

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-44  Score=340.42  Aligned_cols=321  Identities=11%  Similarity=0.127  Sum_probs=229.2

Q ss_pred             ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC--
Q 012699           81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS--  158 (458)
Q Consensus        81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--  158 (458)
                      ++..++++++.|++|++|++......                              ......+.+|.+.|.+++|+|+  
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~------------------------------~~~~~~l~~~~~~V~~v~wsp~~~  220 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLH------------------------------CVKVQTIVHSFGEVWDLKWHEGCH  220 (524)
T ss_dssp             -----------CEEEEEEEEETTTCC------------------------------EEEEEEEEECCCSEEEEEECSSCC
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCC------------------------------ceEEEEEEecCCcEEEEEECCCCC
Confidence            45667899999999999997542200                              0023346678999999999996  


Q ss_pred             ----CCEEEEEeCCCcEEEEecCCCCCCC---------ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          159 ----GNNIASASVDGTVRIWTYDSSTPAS---------RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       159 ----~~~l~s~~~dg~v~iwd~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                          +.+||+++.||+|++||+..+....         ......|...|.+++|++ + ..|++|+.||+|++||++++.
T Consensus       221 ~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~  298 (524)
T 2j04_B          221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPE  298 (524)
T ss_dssp             CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCS
T ss_pred             CCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCC
Confidence                5799999999999999998764320         112234668899999984 3 479999999999999999764


Q ss_pred             -eeeeccCCCCCCceeee--eecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          226 -VVCDLNTTDAFPSVLDL--KCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       226 -~~~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                       +...+..+.  ..|.++  .++|++ .++++++.|             ++|++||+++++....+........|.+++|
T Consensus       299 ~~~~~~~~H~--~~V~sv~~~~s~~g~~~laS~S~D-------------~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          299 VPSFYDQVHD--SYILSVSTAYSDFEDTVVSTVAVD-------------GYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             SCSEEEECSS--SCEEEEEEECCTTSCCEEEEEETT-------------SEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             CceEEeeccc--ccEEEEEEEcCCCCCeEEEEeccC-------------CeEEEEECCCCCcccccccccccCcccceEe
Confidence             333344444  689998  578887 889999998             5999999998877665542222134788999


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      +|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.|++|++||+...  ..     .....
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~-----~~~~~  436 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LL-----HGIKN  436 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TT-----TCC--
T ss_pred             CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hc-----ccccc
Confidence            999999999999999999999999988889999999999999999999999999999999998642  10     00000


Q ss_pred             C--CCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc-CCCcccccCCCCCcEEEEEECCCCC---eEEEecCCCcEEEE
Q 012699          382 P--ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR-GHASGMRTLPHGAAITTVDWHPTLP---MFLTGSADHSVQVM  455 (458)
Q Consensus       382 ~--~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~dg~v~iw  455 (458)
                      .  ......+..++|+|+++.+.. ..+  ..+|+.. ++..+..+.+|...|++++|+|+++   +||+|+.||.||||
T Consensus       437 ~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          437 SSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             ----CCCCEEEECBCCSSSCEEEE-CCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             CccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence            0  012224778999999985532 222  2333332 2335566778999999999999965   99999999999999


Q ss_pred             eCC
Q 012699          456 SLS  458 (458)
Q Consensus       456 ~l~  458 (458)
                      ++.
T Consensus       514 ~l~  516 (524)
T 2j04_B          514 YLS  516 (524)
T ss_dssp             ECS
T ss_pred             Ecc
Confidence            974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.9e-43  Score=323.33  Aligned_cols=333  Identities=15%  Similarity=0.144  Sum_probs=269.7

Q ss_pred             eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC
Q 012699           27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG  106 (458)
Q Consensus        27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~  106 (458)
                      +++++| +|+|++|++++.|+.+++|+...+.....+...     .......++.++.++++++.|+.+++|++....  
T Consensus        59 ~~~~~~-s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--  130 (420)
T 3vl1_A           59 GKGNTF-EKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--  130 (420)
T ss_dssp             CTTCEE-EEEETTEEEEEETTEEEEEECCSEETTTTSCSC-----CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--
T ss_pred             ccceee-eecCCeEEEEEcCCcEEEEEecccceeeEEecC-----CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--
Confidence            458999 999999999999999999999887665333211     112224566778899999999999999975422  


Q ss_pred             cccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc
Q 012699          107 AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA  186 (458)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  186 (458)
                                                      ....+.+|.+.|++++|+|++++|++|+.|++|++||+.+++...  .
T Consensus       131 --------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~  176 (420)
T 3vl1_A          131 --------------------------------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--T  176 (420)
T ss_dssp             --------------------------------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE--E
T ss_pred             --------------------------------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce--E
Confidence                                            445667999999999999999999999999999999999877653  3


Q ss_pred             cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC----------------------CCCceeeeee
Q 012699          187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD----------------------AFPSVLDLKC  244 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----------------------~~~~v~~~~~  244 (458)
                      ...|...|.+++|+ +++.+|++++.||.|++||+++++....+..+.                      +...+.+++|
T Consensus       177 ~~~h~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~  255 (420)
T 3vl1_A          177 LIGHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF  255 (420)
T ss_dssp             EECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred             EcCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence            34578899999999 678899999999999999999999888776532                      1245666778


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCC
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMS  323 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~  323 (458)
                      +|++..+++++.+             |.|++||+++++....+. ..|...+.+++|+|+++ +|++|+.||.|++||++
T Consensus       256 s~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          256 GTYGKYVIAGHVS-------------GVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             SCTTEEEEEEETT-------------SCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEcCC-------------CeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            8999999999888             599999999988877764 45778899999999998 99999999999999999


Q ss_pred             CCce-eeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC--
Q 012699          324 AGLQ-ITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR--  399 (458)
Q Consensus       324 ~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--  399 (458)
                      +++. +..+.. |...|.++.+ |++++|++++.|+.|++|++....................+...+..++|+|+++  
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  400 (420)
T 3vl1_A          322 SPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN  400 (420)
T ss_dssp             CTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred             CCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence            8754 667766 6778888855 5778999999999999999987544332222222222345677899999999999  


Q ss_pred             -EEEEEeCCccEEEEEccC
Q 012699          400 -RLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       400 -~l~~~~~~~~i~i~~~~~  417 (458)
                       .|++++.+|.+.+|+++.
T Consensus       401 g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          401 GEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CEEEEEETTTEEEEEESCC
T ss_pred             ceEEEEcCCceEEEEeccC
Confidence             788888899999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-42  Score=311.41  Aligned_cols=296  Identities=18%  Similarity=0.224  Sum_probs=254.5

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ....+.+|.++|++++|+|++++|++++.||.|++||+.+++...  ....|...|.+++|+ +++++|++++.||.|++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~i  100 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--TLDGHTGTIWSIDVD-CFTKYCVTGSADYSIKL  100 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTTEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--hhhhcCCcEEEEEEc-CCCCEEEEEeCCCeEEE
Confidence            455688999999999999999999999999999999998876543  334577899999999 68889999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-----------eEEe
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-----------MTVL  287 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-----------~~~~  287 (458)
                      ||+.+++....+..   ...+.+++|+|++..++++..+.        ...+|.|++||+.....           ...+
T Consensus       101 wd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~--------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~  169 (369)
T 3zwl_B          101 WDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNV--------MKNPGSINIYEIERDSATHELTKVSEEPIHKI  169 (369)
T ss_dssp             EETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCB--------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred             EECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCc--------cCCCCEEEEEEecCCccceeecccccceeeec
Confidence            99999998888772   36899999999999999988761        11124999999876542           2222


Q ss_pred             ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          288 PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      ........+.+++|+|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence            2222223899999999999999999999999999998 788889999999999999999999999999999999999998


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc--------------cEEEEEccCCCcccccCCCCCcEE
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV--------------RAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------------~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                      ........          +...+..++|+|+++++++++.++              .+++||+.+......+.+|...|+
T Consensus       250 ~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~  319 (369)
T 3zwl_B          250 LQVLKKYE----------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN  319 (369)
T ss_dssp             CCEEEEEE----------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             Cceeeeec----------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE
Confidence            65544322          456689999999999999999988              899999999988888889999999


Q ss_pred             EEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          433 TVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +++|+|++++|++++.||.|++|+++
T Consensus       320 ~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          320 TVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECc
Confidence            99999999999999999999999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.8e-42  Score=316.18  Aligned_cols=301  Identities=12%  Similarity=0.144  Sum_probs=243.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699          138 DFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI  216 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  216 (458)
                      ...+.+.+|.+.|++++|+|++ ++|++|+.||+|++||+.+++.........+...|.+++|+|.++.+|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            3566888999999999999998 999999999999999999877654333345788999999996578999999999999


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      ++||+.+...........+...+.+++|+|++..+++++.+             |.|++||++ ++....+.  .|...|
T Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~--~h~~~v  207 (383)
T 3ei3_B          144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-------------GRLLLLGLD-GHEIFKEK--LHKAKV  207 (383)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-------------SEEEEEETT-SCEEEEEE--CSSSCE
T ss_pred             EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-------------CCEEEEECC-CCEEEEec--cCCCcE
Confidence            99999964443333333344679999999999999999988             599999994 56666554  677889


Q ss_pred             EEEEEccCCC-EEEEEecCCeEEEEeCCC----CceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCee
Q 012699          297 TSLCFNHNGK-ILAASAVDGMIHMFDMSA----GLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       297 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      .+++|+|+++ +|++++.|+.|++||+++    +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++....
T Consensus       208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP  286 (383)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred             EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            9999999998 999999999999999998    5566665 6999999999999 9999999999999999999976553


Q ss_pred             EEeecCCcc-cC-------CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC--CCCcEEEEEECCCC
Q 012699          371 LWTRNCSRF-CD-------PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP--HGAAITTVDWHPTL  440 (458)
Q Consensus       371 ~~~~~~~~~-~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~  440 (458)
                      ......... ..       .......+..++|+|++++  +++.|+.|++||+.+++.+..+.+  |...+..++|+|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g  364 (383)
T 3ei3_B          287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG  364 (383)
T ss_dssp             SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred             cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence            322211100 00       0011234555777777777  778899999999998877777765  56788888999999


Q ss_pred             CeEEEecCCCcEEEEeCC
Q 012699          441 PMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       441 ~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|++|+ ||.|+||+++
T Consensus       365 ~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          365 DVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             SEEEEEE-TTEEEEEECC
T ss_pred             cEEEEec-CCcEEEEecC
Confidence            9999997 9999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.6e-42  Score=309.51  Aligned_cols=307  Identities=18%  Similarity=0.251  Sum_probs=244.2

Q ss_pred             hhccccCCCcceeeeeeccCC-CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           16 QLSRLKNNSETIKYANIGQTK-NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~-~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ...+|+||...|++++| +|+ +++||||+.|++++||++......                                  
T Consensus        30 l~~tL~GH~~~V~~v~~-sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------------------   74 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIAT-TPQFPDMILSASRDKTIIMWKLTRDETN----------------------------------   74 (340)
T ss_dssp             EEEEECCCSSCEEEEEE-CTTCTTEEEEEETTSCEEEEEECCSSSC----------------------------------
T ss_pred             EEEEECCccCCEEEEEE-eCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------------------
Confidence            34579999999999999 887 689999999999999997654100                                  


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                               ...+.+.+++|...|.+++|+|++++|++++.|+.|++|
T Consensus        75 -----------------------------------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           75 -----------------------------------------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             -----------------------------------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             -----------------------------------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence                                                     001445678999999999999999999999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC--CeEE
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE--PIFV  252 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~  252 (458)
                      +........  ....+...+....+. +++.+|++++.|+.+++||+........ ....+...+..+++++++  ..++
T Consensus       114 ~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          114 DLTTGTTTR--RFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             ETTTTEEEE--EEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             eecccceee--eecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEE-EeccccCcccceEEccCCCCcEEE
Confidence            987765432  333455667777887 7788899999999999999886654432 223344678888888765  4567


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP  332 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  332 (458)
                      +++.+             +.|++||+++++....+.  +|...|++++|+|++++|++|+.||.|++||+++.+++..+.
T Consensus       190 s~~~d-------------~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  254 (340)
T 4aow_A          190 SCGWD-------------KLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD  254 (340)
T ss_dssp             EEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             EEcCC-------------CEEEEEECCCCceeeEec--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec
Confidence            77777             599999999988877764  678899999999999999999999999999999999988887


Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      . ...|.+++|+|++. +++++.|+.|++||+++..................+...|.+++|+|+|++|++|+.||.|+|
T Consensus       255 ~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i  332 (340)
T 4aow_A          255 G-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV  332 (340)
T ss_dssp             C-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             C-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            5 46799999999885 556677999999999876554443333333344567889999999999999999999999999


Q ss_pred             EEccCCC
Q 012699          413 YQVRGHA  419 (458)
Q Consensus       413 ~~~~~~~  419 (458)
                      ||+.++.
T Consensus       333 W~~~tGt  339 (340)
T 4aow_A          333 WQVTIGT  339 (340)
T ss_dssp             EEEEC--
T ss_pred             EeCCCcC
Confidence            9998864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-43  Score=327.08  Aligned_cols=323  Identities=12%  Similarity=0.232  Sum_probs=256.7

Q ss_pred             CCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCC---CCCCCccccccCCC
Q 012699          118 LYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDS---STPASRNATIYCGT  192 (458)
Q Consensus       118 ~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~  192 (458)
                      .|+|++..++....+. ...+.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +..........|..
T Consensus        34 ~f~~~~~~~~~~~~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~  112 (437)
T 3gre_A           34 EFGPIQEIVRSPNMGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSS  112 (437)
T ss_dssp             GGCCCCCCCCCCCGGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSS
T ss_pred             hcCCcccccccccccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCC
Confidence            4677777777655433 334567778 89999999999999 999999999999999999876   44222233445788


Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcC---CCceeeeccCC--------C--CCCceeeee--ecCCCCeEEEeecc
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVD---AKRVVCDLNTT--------D--AFPSVLDLK--CSPVEPIFVSAAAS  257 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~--------~--~~~~v~~~~--~~~~~~~~~~~~~~  257 (458)
                      .|.+++|+ +++.+|++++.||.|++||++   +++.......+        .  +...+.++.  +++++..+++++.+
T Consensus       113 ~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence            99999999 688899999999999999995   44443322211        1  223455555  55778888888887


Q ss_pred             cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCC
Q 012699          258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDS  336 (458)
Q Consensus       258 ~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~  336 (458)
                                   |.|++||+++++....+....|...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..
T Consensus       192 -------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  258 (437)
T 3gre_A          192 -------------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA  258 (437)
T ss_dssp             -------------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred             -------------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence                         59999999999998888754477899999999999999999999999999999999988886 7888


Q ss_pred             CeEEEEEcC----CCCEEEEecCCCeEEEEeccCCCeeEEeecCCc-----ccC----------C--CCCCCceeEEEEc
Q 012699          337 AISSILFGP----DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-----FCD----------P--ESSKSCRHEMALD  395 (458)
Q Consensus       337 ~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~----------~--~~~~~~v~~~~~s  395 (458)
                      +|.+++|+|    ++.+|++++.||.|++||+++............     ...          .  ..+...|.+++|+
T Consensus       259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence            999996654    678999999999999999997765443321110     000          1  1267789999999


Q ss_pred             cCCCEEEEEeCCccEEEEEccCCCcccccCC-------------------------------------CCCcEEEEEECC
Q 012699          396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-------------------------------------HGAAITTVDWHP  438 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~  438 (458)
                       ++++|++++.|+.|++||+.+.+....+.+                                     |...|++++|++
T Consensus       339 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~  417 (437)
T 3gre_A          339 -NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE  417 (437)
T ss_dssp             -TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred             -CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence             889999999999999999988765554443                                     899999999999


Q ss_pred             C--CCeEEEecCCCcEEEEe
Q 012699          439 T--LPMFLTGSADHSVQVMS  456 (458)
Q Consensus       439 ~--~~~l~s~~~dg~v~iw~  456 (458)
                      +  +.+|++|+.||.|+||+
T Consensus       418 ~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          418 VDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SSSSEEEEEEETTSCEEEEC
T ss_pred             cCCceEEEEEcCCceEEEeC
Confidence            8  77999999999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.6e-41  Score=299.78  Aligned_cols=291  Identities=18%  Similarity=0.271  Sum_probs=248.8

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ...+.+|...|++++| +|++++|++|+.|+.+++|+...+.                                      
T Consensus        16 ~~~~~gh~~~v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~--------------------------------------   56 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGK--------------------------------------   56 (312)
T ss_dssp             EEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCC--------------------------------------
T ss_pred             EEEEcccCCcEEEEEE-CCCCCEEEEeeCCCeEEEEeCCCcc--------------------------------------
Confidence            4578899999999999 9999999999999999999865431                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                ....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        57 ------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           57 ------------------------------------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ------------------------------------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence                                                      22345689999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA  256 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  256 (458)
                      .+++...  ....+...|.+++|+ +++++|++++.||.|++||+++++....+..+.  .++.+++|+|++..+++++.
T Consensus        95 ~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           95 SSGKCLK--TLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             TTCCEEE--EEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred             CCCcEEE--EEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC--CcEEEEEEcCCCCEEEEEeC
Confidence            8876543  334567889999999 678899999999999999999999888877654  68999999999999999998


Q ss_pred             ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699          257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                      +             |.|++||+++++....+. ..+...+..++|+|++++|++++.||.|++||+++++.+..+.+|..
T Consensus       170 d-------------~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          170 D-------------GLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             T-------------SCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred             C-------------CcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence            8             599999999988877764 34556799999999999999999999999999999999999988876


Q ss_pred             CeEE---EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe--CCccEE
Q 012699          337 AISS---ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS--GSVRAP  411 (458)
Q Consensus       337 ~v~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~  411 (458)
                      ...+   ....+++.+|++++.||.|++||+.+......         ...|...+.+++|+|++++|++++  .|+.|+
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---------~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~  306 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK---------LQGHTDVVISTACHPTENIIASAALENDKTIK  306 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE---------ECCCSSCEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh---------hhccCCcEEEEeecCcCCceEEEEccCCccEE
Confidence            5432   23346788999999999999999987654332         235777899999999999999987  689999


Q ss_pred             EEEcc
Q 012699          412 IYQVR  416 (458)
Q Consensus       412 i~~~~  416 (458)
                      +|+.+
T Consensus       307 ~W~~d  311 (312)
T 4ery_A          307 LWKSD  311 (312)
T ss_dssp             EEECC
T ss_pred             EecCC
Confidence            99864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-42  Score=307.16  Aligned_cols=298  Identities=15%  Similarity=0.212  Sum_probs=227.5

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      .++.|.+|...|.+++| +++  +||+|+.|+++++|+...+..                                    
T Consensus         6 ~~~~~~~h~~~v~~~~~-s~~--~las~~~D~~i~lw~~~~~~~------------------------------------   46 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDF-SQG--ILATGSTDRKIKLVSVKYDDF------------------------------------   46 (330)
T ss_dssp             EEEEEECCSSCEEEEEE-ETT--EEEEEESSSCEEEEECSSSCC------------------------------------
T ss_pred             cceeeccCCCceeeecc-CCC--EEEEEcCCCEEEEEEecCCCe------------------------------------
Confidence            46789999999999999 877  999999999999998754310                                    


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee-c-cCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF-L-GHTSPISCCRFSSSGNNIASASVDGTVRI  173 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  173 (458)
                                                                .....+ . +|.+.|++++|+|++++|++|+.|++|++
T Consensus        47 ------------------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i   84 (330)
T 2hes_X           47 ------------------------------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI   84 (330)
T ss_dssp             ------------------------------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ------------------------------------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence                                                      011122 2 49999999999999999999999999999


Q ss_pred             EecCCCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC----ceeeeccCCCCCCceeeeee
Q 012699          174 WTYDSSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK----RVVCDLNTTDAFPSVLDLKC  244 (458)
Q Consensus       174 wd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~v~~~~~  244 (458)
                      ||+.....     ........|...|.+++|+ +++++|++++.|++|++||+...    +++..+..+.  ..|.+++|
T Consensus        85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~--~~v~~v~~  161 (330)
T 2hes_X           85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS--QDVKHVIW  161 (330)
T ss_dssp             EEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS--SCEEEEEE
T ss_pred             EEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC--CceEEEEE
Confidence            99864321     1111234577899999999 67899999999999999999532    3444555444  68999999


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeC
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDM  322 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~  322 (458)
                      +|++..+++++.|             +.|++||..++.......+.+|...|.+++|+|+  +.+|++|+.|+.|++||+
T Consensus       162 ~p~~~~l~s~s~D-------------~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          162 HPSEALLASSSYD-------------DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             CSSSSEEEEEETT-------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             CCCCCEEEEEcCC-------------CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            9999999999998             5999999987643333345688899999999998  778999999999999998


Q ss_pred             CCC--------ceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC-ceeEE
Q 012699          323 SAG--------LQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS-CRHEM  392 (458)
Q Consensus       323 ~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  392 (458)
                      +.+        .....+.. |...|.+++|++++ +|++++.||.|++||..++.......      ....|.. .+.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~------~~~~h~~~~v~~v  301 (330)
T 2hes_X          229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK------RALCHGVYEINVV  301 (330)
T ss_dssp             EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE------ESCTTTTSCEEEE
T ss_pred             cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec------cccccccceEEEE
Confidence            764        34445554 89999999999766 89999999999999987653111110      0123444 79999


Q ss_pred             EEcc--CCCEEEEEeCCccEEEEEccC
Q 012699          393 ALDV--NGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       393 ~~s~--~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      +|+|  ++++|++++.|+.|++|+++.
T Consensus       302 ~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          302 KWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEecCCCceEEEEecCCCcEEEEEecc
Confidence            9999  789999999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-42  Score=322.69  Aligned_cols=299  Identities=12%  Similarity=0.153  Sum_probs=236.0

Q ss_pred             eeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          140 LETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      .....+|...|+||+|+| ++++||+|+.||+|+|||+.+++.........|...|.+++|+|.++.+|++++.||+|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            345668999999999999 5678999999999999999887665444455688899999999778899999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||++++........+.....+.+++|+|++.++++++.+             |.|++||++. +.+..  +..|...|.+
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-------------g~i~~wd~~~-~~~~~--~~~h~~~v~~  255 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-------------GNVILLNMDG-KELWN--LRMHKKKVTH  255 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-------------SBEEEEESSS-CBCCC--SBCCSSCEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-------------CcEeeeccCc-ceeEE--EecccceEEe
Confidence            999887655544444444568899999999999999988             5999999975 33333  4578889999


Q ss_pred             EEEccCCC-EEEEEecCCeEEEEeCCCCceee---eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          299 LCFNHNGK-ILAASAVDGMIHMFDMSAGLQIT---GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       299 ~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      ++|+|++. +|++|+.|+.|++||+++.+...   ...+|...|++++|+|++++|++++.||.|++||+.+........
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence            99999876 78899999999999998865443   335799999999999999999999999999999999876554332


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEe------------CCccEEEEEccCCCcccccC-CCCCcEEEE-EECCCC
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTS------------GSVRAPIYQVRGHASGMRTL-PHGAAITTV-DWHPTL  440 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~-~~~~~~  440 (458)
                      ....   .......+....|+|++.+++++.            .++.|++||..++.....+. +|...|.++ +|+|+|
T Consensus       336 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg  412 (435)
T 4e54_B          336 PHPH---RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG  412 (435)
T ss_dssp             CCCC---CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS
T ss_pred             cccc---cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC
Confidence            1111   001111233455666666665553            23579999999887766655 688889887 699999


Q ss_pred             CeEEEecCCCcEEEEeCC
Q 012699          441 PMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       441 ~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|++|+ |+.|+||++.
T Consensus       413 ~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          413 DTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SCEEEEC-SSEEEECCCC
T ss_pred             CEEEEEc-CCcEEEEECC
Confidence            9999876 8899999974

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-41  Score=335.20  Aligned_cols=294  Identities=17%  Similarity=0.240  Sum_probs=244.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          138 DFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      .....+++|++.|++++|+|++ ++|+||+.|++|++|++.......   ......|...|.+++|+ +++++|++|+.|
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~l~sgs~D  451 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWD  451 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCEEEEEeCC
Confidence            3456789999999999999864 789999999999999997654321   12344577899999999 788999999999


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGED  292 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~~  292 (458)
                      |.|++||+.+++....+..|.  ..|.+++|+|++..+++++.|             +.|++||.......... ...+|
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~~~h  516 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHT--KDVLSVAFSLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGGEGH  516 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSTTSC
T ss_pred             CcEEEEECCCCcceeEEeCCC--CCEEEEEEeCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCCCCC
Confidence            999999999999888877665  689999999999999999998             59999998764433322 12467


Q ss_pred             CCcEEEEEEccCC--CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          293 PPAITSLCFNHNG--KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       293 ~~~i~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ...|.+++|+|++  ..|++|+.|+.|++||+++++....+.+|.+.|++++|+|++++|++++.||.|++||+.+.+..
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            7889999999986  68999999999999999999999999999999999999999999999999999999999986543


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-------------------CCCcE
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-------------------HGAAI  431 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-------------------h~~~v  431 (458)
                      ...          .....+.+++|+|++.+|++++. +.|++||+.+...+..+..                   +...+
T Consensus       597 ~~~----------~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (694)
T 3dm0_A          597 YSL----------EANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC  665 (694)
T ss_dssp             ECC----------BCSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred             EEe----------cCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence            311          13456999999999998887765 4599999988754433321                   11247


Q ss_pred             EEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          432 TTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ++++|+|+|++|++|+.||+|+||++.
T Consensus       666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          666 TSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            899999999999999999999999984

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.6e-42  Score=315.81  Aligned_cols=304  Identities=12%  Similarity=0.122  Sum_probs=251.9

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC----CCccccccCCCceEEEEEecCC----C---eE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP----ASRNATIYCGTEIMSLEWECKS----D---RL  206 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~---~~  206 (458)
                      ...+.+.+|.++|++++|+|  ++|++|+.||+|++||+.+.+.    ........+...|.+++|+ ++    +   .+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~g~~~~~   83 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-QAIERDAFELCL   83 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-EEEETTTEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe-cccccCCccccE
Confidence            46677889999999999999  7999999999999999988761    1122344577899999999 55    8   89


Q ss_pred             EEEEcCCCcEEEEEcCCCce-----eeeccCCCC---CCceeeeeec----CCCCe-EEEeecccCCCCcceeeccceeE
Q 012699          207 LLIGTADGGIKAWNVDAKRV-----VCDLNTTDA---FPSVLDLKCS----PVEPI-FVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       207 l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~---~~~v~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      |++++.||.|++||+.+++.     ...+..+..   ...|.+++|+    |++.. +++++.+             |.|
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i  150 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTT  150 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCE
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcE
Confidence            99999999999999998886     666665531   2689999999    99999 9999887             599


Q ss_pred             EEEECCC------CceeE-----Eeec-----CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC---C
Q 012699          274 TVWNMKT------WKAMT-----VLPL-----GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA---H  334 (458)
Q Consensus       274 ~i~d~~~------~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~  334 (458)
                      ++||+++      ++...     .+..     ..|...+.+++|+|++ +|++++.||.|++||+++++.+..+..   |
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h  229 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM  229 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence            9999998      66555     5543     4567889999999999 999999999999999999999999998   9


Q ss_pred             ---CCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCC----cccCCCCCCCceeEEEEccCCCEEEEE
Q 012699          335 ---DSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCS----RFCDPESSKSCRHEMALDVNGRRLLVT  404 (458)
Q Consensus       335 ---~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~  404 (458)
                         ...|.+++|+|++++|++++.|   +.|++||+++.+.........    .......+...+.+++|+|++++|+++
T Consensus       230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence               9999999999999999999999   999999999875544322100    000011167789999999999999999


Q ss_pred             eCCccEEEEEccCCCcccccC------CC---------------CCcEEEEEECCCC----------CeEEEecCCCcEE
Q 012699          405 SGSVRAPIYQVRGHASGMRTL------PH---------------GAAITTVDWHPTL----------PMFLTGSADHSVQ  453 (458)
Q Consensus       405 ~~~~~i~i~~~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~----------~~l~s~~~dg~v~  453 (458)
                      +.|+.|++||+.+.+....+.      +|               ...|++++|+|++          ++|++++.||.|+
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence            999999999999887777776      67               9999999999998          7999999999999


Q ss_pred             EEeCC
Q 012699          454 VMSLS  458 (458)
Q Consensus       454 iw~l~  458 (458)
                      +|+++
T Consensus       390 iw~~~  394 (397)
T 1sq9_A          390 WFREA  394 (397)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            99973

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-41  Score=312.22  Aligned_cols=294  Identities=15%  Similarity=0.215  Sum_probs=241.4

Q ss_pred             cCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeee-e-------------ccCCceeeeeCCccceeE
Q 012699           21 KNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMG-S-------------AEMGQTWASSRPALSRFA   86 (458)
Q Consensus        21 ~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~l   86 (458)
                      .+|...|.|++| +|||++||+|+ ++++++|+...+.....+.... .             ..+.....+.++++++++
T Consensus        61 ~~h~~~V~~v~f-spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           61 LDHTSVVCCVKF-SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             EECSSCCCEEEE-CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             cCCCCEEEEEEE-CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence            369999999999 99999999987 6899999998876542221110 0             011124467788889999


Q ss_pred             eeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe
Q 012699           87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS  166 (458)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  166 (458)
                      ++++.|+++++|++....                                  .+..+.+|...|++++|+|++++|++++
T Consensus       139 ~s~~~d~~i~iwd~~~~~----------------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRK----------------------------------IVMILQGHEQDIYSLDYFPSGDKLVSGS  184 (393)
T ss_dssp             EEEETTSCEEEEETTTTE----------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCc----------------------------------EEEEEccCCCCEEEEEEcCCCCEEEEec
Confidence            999999999999975422                                  4567889999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC-----CCCCCceee
Q 012699          167 VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT-----TDAFPSVLD  241 (458)
Q Consensus       167 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~~~v~~  241 (458)
                      .|++|++||+.+++...   ...+...+.+++|+|.++.+|++++.||.|++||+++++.+..+..     ..+...|.+
T Consensus       185 ~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          185 GDRTVRIWDLRTGQCSL---TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             TTSEEEEEETTTTEEEE---EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             CCCcEEEEECCCCeeEE---EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            99999999998876532   3345678999999976899999999999999999999987766532     234478999


Q ss_pred             eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee----------EEeecCCCCCcEEEEEEccCCCEEEEE
Q 012699          242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM----------TVLPLGEDPPAITSLCFNHNGKILAAS  311 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~  311 (458)
                      ++|+|++..+++++.|             |.|++||+++....          ....+.+|...|.+++|+|++.+|++|
T Consensus       262 v~~~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  328 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLD-------------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG  328 (393)
T ss_dssp             EEECTTSSEEEEEETT-------------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred             EEECCCCCEEEEEeCC-------------CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence            9999999999999988             59999999764321          122334688889999999999999999


Q ss_pred             ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC------CCCEEEEecCCCeEEEEeccC
Q 012699          312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP------DETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       312 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      +.|+.|++||+++++++..+.+|...|.+++|+|      ++++|++++.||+|++|++.+
T Consensus       329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999999999999999999999999999999986      678999999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.5e-41  Score=308.66  Aligned_cols=290  Identities=12%  Similarity=0.123  Sum_probs=244.5

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++.........|...|.+++|+ +++++|++++.||.|++||++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEe-CCCCEEEEEcCCCeEEEEECC
Confidence            4569999999999999999999999999999999887522222344577899999999 688999999999999999999


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce---eEEeecCCCCCcEEEE
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---MTVLPLGEDPPAITSL  299 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---~~~~~~~~~~~~i~~~  299 (458)
                      +++.........+...+.+++|+|++..+++++.+             |.|++||++..+.   ...+ ...|...|.++
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~  148 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHI-KKPIRSTVLSL  148 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEE-CTTCCSCEEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeee-ecccCCCeeEE
Confidence            98866665544555789999999999999999988             5999999988764   2222 35677899999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeC------------------CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          300 CFNHNGKILAASAVDGMIHMFDM------------------SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      +|+|++++|++++.||.|++||+                  ..++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  228 (372)
T 1k8k_C          149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  228 (372)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence            99999999999999999999995                  367888888899999999999999999999999999999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC--CC--------------------
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG--HA--------------------  419 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~--~~--------------------  419 (458)
                      ||+++.+......         .+...+.+++|+|++++|+++ .++.|++|++..  +.                    
T Consensus       229 ~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (372)
T 1k8k_C          229 ADADKKMAVATLA---------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA  298 (372)
T ss_dssp             EEGGGTTEEEEEE---------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred             EECCCCceeEEEc---------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence            9999876544322         355679999999999998887 899999999987  21                    


Q ss_pred             ------------cc------ccc-CCCCCcEEEEEEC-CCC---CeEEEecCCCcEEEEeC
Q 012699          420 ------------SG------MRT-LPHGAAITTVDWH-PTL---PMFLTGSADHSVQVMSL  457 (458)
Q Consensus       420 ------------~~------~~~-~~h~~~v~~~~~~-~~~---~~l~s~~~dg~v~iw~l  457 (458)
                                  ..      ..+ .+|..+|++++|+ ++|   ++|++|+.||.|++|++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                        00      223 3899999999976 666   89999999999999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.8e-41  Score=312.00  Aligned_cols=322  Identities=16%  Similarity=0.264  Sum_probs=271.4

Q ss_pred             hhccccCCCcce-eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           16 QLSRLKNNSETI-KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        16 ~~~~l~~h~~~i-~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ..+.|.+|...| +|+++   +|++|++|+.|+++++|+..++.                                    
T Consensus       110 ~~~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~------------------------------------  150 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGK------------------------------------  150 (445)
T ss_dssp             CCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTCC------------------------------------
T ss_pred             eeEEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCCc------------------------------------
Confidence            356788999875 66555   68999999999999999875441                                    


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                                  .+..+.+|.+.|.+++|+  +++|++|+.||+|++|
T Consensus       151 --------------------------------------------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          151 --------------------------------------------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW  184 (445)
T ss_dssp             --------------------------------------------EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred             --------------------------------------------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence                                                        334556899999999997  5699999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      |+.+++...  ....|...|.++.|+   +..+++++.||.|++||+.+++....+..+.  ..+.++.+  ++..++++
T Consensus       185 d~~~~~~~~--~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          185 NAETGECIH--TLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHV--AAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             ETTTTEEEE--EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCS--SCEEEEEE--CSSCEEEE
T ss_pred             ECCcCcEEE--EECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc--ccEEEEEE--CCCEEEEE
Confidence            998876543  334577889999996   4679999999999999999999888877655  67889888  67889998


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                      +.+             |.|++||+++++....+.  .|...|.+++|  ++.++++|+.||.|++||+++++.+..+.+|
T Consensus       256 ~~d-------------g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          256 AYD-------------FMVKVWDPETETCLHTLQ--GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             ETT-------------SCEEEEEGGGTEEEEEEC--CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cCC-------------CEEEEEECCCCcEeEEec--CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            888             599999999988887764  67788999999  7889999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699          335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~  414 (458)
                      ...+.++.++  +++|++++.||.|++||+++.......      .....+...+.+++|+  +++|++++.||.|++||
T Consensus       319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL------QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE------CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEE------ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            9999988874  669999999999999999876554322      2223467789999995  68999999999999999


Q ss_pred             ccCCCccccc-----CCCCCcEEEEEECCCCCeEEEecCCCc----EEEEeCC
Q 012699          415 VRGHASGMRT-----LPHGAAITTVDWHPTLPMFLTGSADHS----VQVMSLS  458 (458)
Q Consensus       415 ~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~dg~----v~iw~l~  458 (458)
                      +.+++.+..+     .+|...|++++|+|++.+|++|+.||+    |.|||++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            9988766555     368899999999999999999999998    9999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-40  Score=312.72  Aligned_cols=323  Identities=17%  Similarity=0.286  Sum_probs=261.3

Q ss_pred             hccccCCCcce-eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           17 LSRLKNNSETI-KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        17 ~~~l~~h~~~i-~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ...|.+|...| +|+++   ++.+|++|+.|+++++|+...++                                     
T Consensus       114 ~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~~-------------------------------------  153 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKK-------------------------------------  153 (464)
T ss_dssp             EEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTE-------------------------------------
T ss_pred             eEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCCc-------------------------------------
Confidence            34788898885 66666   56799999999999999865441                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                                                                 .+..+.+|.+.|++++|+|++ +|++|+.||+|++||
T Consensus       154 -------------------------------------------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          154 -------------------------------------------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             -------------------------------------------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             -------------------------------------------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence                                                       344566899999999999988 999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEEEEcCCCceeeecc---------------------CC
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWNVDAKRVVCDLN---------------------TT  233 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---------------------~~  233 (458)
                      +.+++...  ....|...|.+++|++ +++.++++++.||.|++||+.++.......                     ..
T Consensus       190 ~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          190 IKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             TTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             CCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            98876543  3345778999999986 567899999999999999998876432111                     11


Q ss_pred             CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699          234 DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV  313 (458)
Q Consensus       234 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (458)
                      .+...+.++  ++++..+++++.+             |.|++||+++++....+.  .|...|.+++|+|+++++++|+.
T Consensus       268 ~~~~~v~~~--~~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~  330 (464)
T 3v7d_B          268 GHMASVRTV--SGHGNIVVSGSYD-------------NTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASM  330 (464)
T ss_dssp             CCSSCEEEE--EEETTEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEEEETTTTEEEEEET
T ss_pred             CccceEEEE--cCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEec--CCCCCEEEEEEcCCCCEEEEEeC
Confidence            122345444  6778888888887             599999999988887764  67788999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                      ||.|++||+++++++..+.+|...|.+++|+  +++|++++.||.|++||+.+.......          .+...+..++
T Consensus       331 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----------~~~~~~~~~~  398 (464)
T 3v7d_B          331 DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------HHTNLSAITT  398 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----------ECTTCCCEEE
T ss_pred             CCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----------cCCCCccEEE
Confidence            9999999999999999999999999999997  579999999999999999986554432          1344577889


Q ss_pred             EccCCCEEEEEeCCccEEEEEccCCCcccc-cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMR-TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      |+|++++|++++ ++.|++||+.+++.+.. ..+|...|++++|+ ...++++++.||.+.+|-
T Consensus       399 ~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          399 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            999999999988 89999999999877665 55899999999997 345666677787665553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.9e-42  Score=317.66  Aligned_cols=321  Identities=12%  Similarity=0.113  Sum_probs=257.4

Q ss_pred             eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699           77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS  156 (458)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  156 (458)
                      +.+++++.++++++.|+.+++|++....                                  ....+..| ..+....|+
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~----------------------------------~~~~~~~~-~~~~~~~~~  106 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRD----------------------------------GSKMLKRA-DYTAVDTAK  106 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEE----------------------------------TTTTSCSC-CEEEEEEEC
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccc----------------------------------eeeEEecC-CceEEEEEe
Confidence            4555668889999999999999975532                                  11122344 445556789


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF  236 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  236 (458)
                      |++++|++|+.||.|++||+.+++...  ....|...|.+++|+ +++++|++++.|+.|++||+.+++....+..+.  
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--  181 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR--  181 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCS--
T ss_pred             cCCCEEEEEECCCCEEEEeCCCcceee--ecccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC--
Confidence            999999999999999999998765532  234678899999999 678899999999999999999999888776554  


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-CCCCcEEEE----------------
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSL----------------  299 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~----------------  299 (458)
                      ..|.+++|+|++..+++++.+             |.|++||+++++....+... .+...+.++                
T Consensus       182 ~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  248 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS  248 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred             CcEEEEEEcCCCCEEEEEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence            789999999999999999988             59999999999888877532 233444444                


Q ss_pred             -----EEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEE
Q 012699          300 -----CFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       300 -----~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                           +|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.||.|++||+++...+..
T Consensus       249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG  328 (420)
T ss_dssp             CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred             cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence                 457889999999999999999999988777665 5788999999999998 999999999999999998654222


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc---------ccccCCCCCcEEEEEECCCCC--
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS---------GMRTLPHGAAITTVDWHPTLP--  441 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~--  441 (458)
                      ...       ..+...+..+ +.|++++|++++.|+.|++|++.....         .....+|...|.+++|+|+++  
T Consensus       329 ~~~-------~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  400 (420)
T 3vl1_A          329 EFL-------INEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN  400 (420)
T ss_dssp             EEE-------ESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred             hhh-------ccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence            111       1244567777 556889999999999999999987422         223447889999999999999  


Q ss_pred             -eEEEecCCCcEEEEeCC
Q 012699          442 -MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       442 -~l~s~~~dg~v~iw~l~  458 (458)
                       .|++++.+|.+.+|+++
T Consensus       401 g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          401 GEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CEEEEEETTTEEEEEESC
T ss_pred             ceEEEEcCCceEEEEecc
Confidence             77788889999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-41  Score=309.61  Aligned_cols=300  Identities=13%  Similarity=0.173  Sum_probs=243.3

Q ss_pred             eeccCCCCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCC---CeEEEEEc
Q 012699          142 TFLGHTSPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKS---DRLLLIGT  211 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~---~~~l~~~~  211 (458)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++........   .+...|.+++|+|..   +.+|++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    456666777789999999876654322222   255789999999542   67999999


Q ss_pred             CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec-
Q 012699          212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL-  289 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~-  289 (458)
                      .||.|++||+.+++.+..+..+.  ..|.+++|+| ++..+++++.+             |.|++||+++++....+.. 
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECST
T ss_pred             CCCEEEEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEeccc
Confidence            99999999999999988887654  7899999999 89999999988             5999999999888777632 


Q ss_pred             CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----------------------------CCCCCeEEE
Q 012699          290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP----------------------------AHDSAISSI  341 (458)
Q Consensus       290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----------------------------~~~~~v~~~  341 (458)
                      ..|...|.+++|+|++++|++++.||.|++||+++++....+.                            .|...|.++
T Consensus       158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  237 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV  237 (366)
T ss_dssp             TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred             ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence            4678899999999999999999999999999998876554433                            399999999


Q ss_pred             EEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC-----CcccCCCCCCCceeEEEEccC--CCEEEEEeCCccEEEEE
Q 012699          342 LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC-----SRFCDPESSKSCRHEMALDVN--GRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       342 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~i~i~~  414 (458)
                      +|+  +++|++++.|+.|++||+.+..........     ........+...+.+++|+|+  +++|++++.||.|++||
T Consensus       238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd  315 (366)
T 3k26_A          238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD  315 (366)
T ss_dssp             EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred             EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence            998  679999999999999999876441110000     001112345667899999999  99999999999999999


Q ss_pred             ccCCCccc----ccCCC--CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          415 VRGHASGM----RTLPH--GAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       415 ~~~~~~~~----~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +.+.....    .+.+|  ...|++++|+|++++|++++.||.|++||+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99875443    44556  7999999999999999999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-41  Score=338.14  Aligned_cols=364  Identities=14%  Similarity=0.184  Sum_probs=293.7

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ..++.+.+|...|++++| +|++++|++|+.|+.+++|+..++.....+.    ...+....+.+++++.++++++.|+.
T Consensus        46 ~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~  120 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLT  120 (814)
T ss_dssp             EEEEEEECCSSCEEEEEE-EGGGTEEEEEETTSEEEEEETTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             ceEEEEecCCCcEEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCCEEEEEEeCCCCEEEEEcCCCE
Confidence            456788899999999999 9999999999999999999998876543222    11233445666777889999999999


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRI  173 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i  173 (458)
                      +++|++....                                 .....+.+|..+|.+++|+| +++.|++++.||+|++
T Consensus       121 i~vw~~~~~~---------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v  167 (814)
T 3mkq_A          121 VKLWNWENNW---------------------------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (814)
T ss_dssp             EEEEEGGGTS---------------------------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             EEEEECCCCc---------------------------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            9999986521                                 14556779999999999999 8899999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      ||+.++..... ....+...+.+++|+| +++.++++++.||.|++||+.+++....+..+.  ..+.+++|+|+++.++
T Consensus       168 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~  244 (814)
T 3mkq_A          168 WSLGQSTPNFT-LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIII  244 (814)
T ss_dssp             EETTCSSCSEE-EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEE
T ss_pred             EECCCCcceeE-EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEE
Confidence            99987665432 2223347899999995 278899999999999999999999888877654  6899999999999999


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC--EEEEEecCCeEEEEeCCCCceee-
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK--ILAASAVDGMIHMFDMSAGLQIT-  329 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~-  329 (458)
                      +++.+             |.|++||+.+++....+.  .+...+.+++|+|++.  +++++ .++.+.+|++....... 
T Consensus       245 ~~~~d-------------g~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  308 (814)
T 3mkq_A          245 SGSED-------------GTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLS  308 (814)
T ss_dssp             EEETT-------------SCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEE
T ss_pred             EEeCC-------------CeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeE
Confidence            99988             599999999998888775  4567899999999987  45554 56678888875432211 


Q ss_pred             ------------------------------------------eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          330 ------------------------------------------GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       330 ------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                                                                .+..+...+.+++|+|+|+++++++ |+.+.+|++...
T Consensus       309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~  387 (814)
T 3mkq_A          309 LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW  387 (814)
T ss_dssp             ECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             ECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence                                                      1123455688999999999999988 899999998643


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCC---CeEE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL---PMFL  444 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~  444 (458)
                      ...              +...+.+++|+|+|+++++++.++.+++|+.        +.+|...+.+++|+|++   ..|+
T Consensus       388 ~~~--------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~dg~~~~~l~  445 (814)
T 3mkq_A          388 RNK--------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAIDRLFSGALL  445 (814)
T ss_dssp             EEE--------------EEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCCCEEECSSSE
T ss_pred             ccc--------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCccceecceEE
Confidence            221              1234778999999999999999999999963        23577789999999998   6899


Q ss_pred             EecCCCcEEEEeCC
Q 012699          445 TGSADHSVQVMSLS  458 (458)
Q Consensus       445 s~~~dg~v~iw~l~  458 (458)
                      +++.|+.|++||++
T Consensus       446 ~~~~d~~v~~~d~~  459 (814)
T 3mkq_A          446 GVKSDGFVYFFDWD  459 (814)
T ss_dssp             EEEETTEEEEECTT
T ss_pred             EEecCCEEEEEECC
Confidence            99999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.3e-40  Score=303.70  Aligned_cols=298  Identities=14%  Similarity=0.215  Sum_probs=242.9

Q ss_pred             eeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCcccc-----------ccCCCceEEEEEecCCCeE
Q 012699          139 FLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNAT-----------IYCGTEIMSLEWECKSDRL  206 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~  206 (458)
                      ....+.+|.++|++++|+| ++++|++|+.||+|++||+.++........           ..+...|.+++|+|.++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            4456778999999999999 999999999999999999998776543221           1377899999999668889


Q ss_pred             EEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC---eEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP---IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       207 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      |++++.||.|++||+.+++....+...   ..+..+.+.|.+.   .+++++.+             |.|++||+++++.
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~d~~~~~~  178 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFE---ETVYSHHMSPVSTKHCLVAVGTRG-------------PKVQLCDLKSGSC  178 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEECSSCSSCCEEEEEESS-------------SSEEEEESSSSCC
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCC---CceeeeEeecCCCCCcEEEEEcCC-------------CeEEEEeCCCcce
Confidence            999999999999999999988777643   5688888888554   88888877             5999999999888


Q ss_pred             eEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCCCc-eeeee---------------eCCCCCeEEEEEcCC
Q 012699          284 MTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGL-QITGW---------------PAHDSAISSILFGPD  346 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~  346 (458)
                      ...+.  .|...|.+++|+|+++ +|++|+.||.|++||++++. .+..+               ..|...|.+++|+|+
T Consensus       179 ~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          179 SHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             eeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            87764  6778899999999998 58999999999999998765 33333               578899999999999


Q ss_pred             CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC
Q 012699          347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP  426 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~  426 (458)
                      +++|++++.||.|++||+.+..........    ........+........+..+++++.++.|++||+.+...+..+.+
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG  332 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceecccc----ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence            999999999999999999986543211100    0011112222233334556677778899999999999988888889


Q ss_pred             CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          427 HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       427 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |...|++++|+|++++|++++.||.|++|+++
T Consensus       333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            99999999999999999999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.7e-41  Score=304.48  Aligned_cols=298  Identities=14%  Similarity=0.232  Sum_probs=239.4

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEE-EEEeC---CCcEEEEecCCCCCCCccccccCCCceEEEEEecCC--CeEEEEEcCC
Q 012699          140 LETFLGHTSPISCCRFSSSGNNI-ASASV---DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS--DRLLLIGTAD  213 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l-~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d  213 (458)
                      ...+.+|.+.|.+++|+|+++.+ ++++.   |++|++||+.+++... .....+..+|.+++|+|..  +.+|++++.|
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            34567899999999999998655 56665   9999999998876542 2334677899999999543  7899999999


Q ss_pred             CcEEEEEcCCCc-eeeeccCCCCCCceeee------eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeE
Q 012699          214 GGIKAWNVDAKR-VVCDLNTTDAFPSVLDL------KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMT  285 (458)
Q Consensus       214 g~i~~wd~~~~~-~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~  285 (458)
                      |.|++||+.+++ ....+..+.  ..+.++      +|+|+++.+++++.+             |.|++||+++++ ...
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSE
T ss_pred             CeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcce
Confidence            999999999887 666666554  678888      567899999999988             599999999876 566


Q ss_pred             EeecCC--CCCcEEEEE----EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC---CCCEEEEecCC
Q 012699          286 VLPLGE--DPPAITSLC----FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP---DETSIFSLGSD  356 (458)
Q Consensus       286 ~~~~~~--~~~~i~~~~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d  356 (458)
                      .+....  ....+.+++    |+|++++|++++.||.|++||+++++.... ..|...|.+++|+|   ++.+|++++.|
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d  233 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE  233 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred             eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence            554321  134789998    788999999999999999999998887544 67889999999999   99999999999


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCCCc---------------
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGHAS---------------  420 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~~~---------------  420 (458)
                      |.|++||+++........    ......+...+.+++|+|+++ +|++++.||.|++||+.....               
T Consensus       234 g~i~i~d~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~  309 (357)
T 3i2n_A          234 GKFHVFDMRTQHPTKGFA----SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG  309 (357)
T ss_dssp             TEEEEEEEEEEETTTEEE----EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred             CeEEEEeCcCCCccccee----eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence            999999998643221110    001225778899999999998 899999999999999986532               


Q ss_pred             ----ccccCCCCCcEEEEEECCCCCeEE-EecCCCcEEEEeCC
Q 012699          421 ----GMRTLPHGAAITTVDWHPTLPMFL-TGSADHSVQVMSLS  458 (458)
Q Consensus       421 ----~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~l~  458 (458)
                          +..+.+|...|++++|+|++++|+ +++.||.|+||++.
T Consensus       310 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          310 SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence                233447999999999999999998 89999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-41  Score=310.47  Aligned_cols=335  Identities=12%  Similarity=0.118  Sum_probs=228.0

Q ss_pred             ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccc
Q 012699           20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSK   99 (458)
Q Consensus        20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~   99 (458)
                      ++.|...|++++| +|+|++||+|+.|+.+++|+...+..                                        
T Consensus         7 ~~~~~~~v~~~~~-s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------   45 (377)
T 3dwl_C            7 LHILPKPSYEHAF-NSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------   45 (377)
T ss_dssp             EEECSSCCSCCEE-CSSSSEEECCCSSSCBCEEEEETTEE----------------------------------------
T ss_pred             EecCCCcEEEEEE-CCCCCEEEEecCCCEEEEEEccCCce----------------------------------------
Confidence            4456778999999 99999999999999999998654310                                        


Q ss_pred             cccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC
Q 012699          100 LEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS  179 (458)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  179 (458)
                                                            +.+..+.+|.+.|++++|+|++++|++++.|++|++||+.++
T Consensus        46 --------------------------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C           46 --------------------------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             --------------------------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             --------------------------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence                                                  033456689999999999999999999999999999999887


Q ss_pred             C-CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699          180 T-PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       180 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      . .........+...|.+++|+ +++++|++++.|+.|++||+++++.   ...+... +...|.+++|+|++..+++++
T Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           88 GTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             -CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEE
T ss_pred             CceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEe
Confidence            6 22233345577899999999 6888999999999999999998873   4445441 337899999999999999999


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCc----------------eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWK----------------AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM  319 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  319 (458)
                      .+             |.|++||+...+                ......+ .|...|.+++|+|++++|++++.||.|++
T Consensus       166 ~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          166 AD-------------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             SS-------------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             CC-------------CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence            88             599999986322                1112223 77888999999999999999999999999


Q ss_pred             EeCCCCce----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-EEeecCCcccC-------CCCCCC
Q 012699          320 FDMSAGLQ----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCD-------PESSKS  387 (458)
Q Consensus       320 ~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~-------~~~~~~  387 (458)
                      ||+++++.    +..+.+|..+|.+++|+|++++|++++.++.+ +|+....... ...........       ......
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (377)
T 3dwl_C          232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE  310 (377)
T ss_dssp             CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred             EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence            99999887    88899999999999999999999998877666 6766533211 10000000000       000001


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC----eEEEecCCCcEEEEeC
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP----MFLTGSADHSVQVMSL  457 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~l~s~~~dg~v~iw~l  457 (458)
                      ....+.|++....+......+...       ........|...|+++++.+...    .|+|||.||.|+|||+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          311 EEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             C--------------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccchhhccccc-------cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            133344444333222211111111       11223336999999999776543    5999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.3e-40  Score=289.58  Aligned_cols=258  Identities=14%  Similarity=0.241  Sum_probs=209.9

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAW  219 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w  219 (458)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+...........|..+|.+++|+|+ ++++|++++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45779999999999999999999999999999999975433223344567889999999854 47899999999999999


Q ss_pred             EcCCCce--eeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          220 NVDAKRV--VCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       220 d~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      |+++++.  ...+..  +...|.+++|+|+  +..+++++.|             |.|++||+++........+..|...
T Consensus        83 d~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           83 KEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETT-------------SEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEECC-------------CcEEEEEecCCCceeeeeeecccCc
Confidence            9998753  333333  3468999999998  7899999988             5999999987643322334578889


Q ss_pred             EEEEEEccC-------------CCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCC---CEEEEecC
Q 012699          296 ITSLCFNHN-------------GKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDE---TSIFSLGS  355 (458)
Q Consensus       296 i~~~~~~~~-------------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~  355 (458)
                      |.+++|+|+             +++|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   .+|++++.
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            999999997             5799999999999999998765    567788999999999999984   79999999


Q ss_pred             CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       356 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      |++|++||+++.......    .......+...+.+++|+|+|++|++++.|+.|++|+...
T Consensus       228 D~~v~iWd~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGPWKK----TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             TSCEEEEEESSTTSCCEE----EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCcEEEEEeCCCCCccce----eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999999864321110    0111234567899999999999999999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-39  Score=321.73  Aligned_cols=303  Identities=17%  Similarity=0.276  Sum_probs=240.9

Q ss_pred             ccccCCCcceeeeeeccCC-CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           18 SRLKNNSETIKYANIGQTK-NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~-~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ..|++|...|++++| +++ +.+|+||+.|+++++|+.......                                    
T Consensus       376 ~~l~~H~~~V~~v~~-~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------------------------  418 (694)
T 3dm0_A          376 GTMRAHTDMVTAIAT-PIDNADIIVSASRDKSIILWKLTKDDKA------------------------------------  418 (694)
T ss_dssp             EEEECCSSCEEEEEC-CTTCCSEEEEEETTSEEEEEECCCSTTC------------------------------------
T ss_pred             hhcccCCceeEEEEe-cCCCCCEEEEEeCCCcEEEEEccCCCcc------------------------------------
Confidence            468899999999999 765 579999999999999987543100                                    


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                               .              ....+.+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus       419 -------------------------~--------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          419 -------------------------Y--------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             -------------------------S--------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             -------------------------c--------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence                                     0              0034467799999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc-CCCCCCceeeeeecCCC--CeEEE
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN-TTDAFPSVLDLKCSPVE--PIFVS  253 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~~~  253 (458)
                      .++....  ....|...|.+++|+ +++.+|++++.|++|++||........... ...|...|.+++|+|++  ..+++
T Consensus       460 ~~~~~~~--~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  536 (694)
T 3dm0_A          460 AAGVSTR--RFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS  536 (694)
T ss_dssp             TTTEEEE--EEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred             CCCccee--EEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence            8876543  345678899999999 678899999999999999987654433222 23344679999999987  57888


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  333 (458)
                      ++.|             |.|++||+++++....+  .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..
T Consensus       537 ~s~d-------------~~v~vwd~~~~~~~~~~--~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          537 ASWD-------------KTVKVWNLSNCKLRSTL--AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             EETT-------------SCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred             EeCC-------------CeEEEEECCCCcEEEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence            8888             59999999998877766  47888999999999999999999999999999999998887764


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc----------cCCCCCCCceeEEEEccCCCEEEE
Q 012699          334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF----------CDPESSKSCRHEMALDVNGRRLLV  403 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~g~~l~~  403 (458)
                       ...|.+++|+|++.+|++++ |+.|++||+++.............          .....+...+.+++|+|+|++|++
T Consensus       602 -~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s  679 (694)
T 3dm0_A          602 -NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS  679 (694)
T ss_dssp             -SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred             -CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence             56799999999998777665 567999999976544332111000          000112224788999999999999


Q ss_pred             EeCCccEEEEEcc
Q 012699          404 TSGSVRAPIYQVR  416 (458)
Q Consensus       404 ~~~~~~i~i~~~~  416 (458)
                      |+.||.|++|++.
T Consensus       680 gs~Dg~i~iW~i~  692 (694)
T 3dm0_A          680 GYTDGVIRVWGIG  692 (694)
T ss_dssp             EETTSEEEEEEC-
T ss_pred             EcCCCeEEEEecc
Confidence            9999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.4e-39  Score=288.13  Aligned_cols=291  Identities=15%  Similarity=0.241  Sum_probs=244.4

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      ...+|...|++++| ++++++|++++ |+.+++|+...+.....+                                   
T Consensus        46 ~~~~h~~~v~~~~~-~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~-----------------------------------   88 (337)
T 1gxr_A           46 NTLNHGEVVCAVTI-SNPTRHVYTGG-KGCVKVWDISHPGNKSPV-----------------------------------   88 (337)
T ss_dssp             EEECCSSCCCEEEE-CSSSSEEEEEC-BSEEEEEETTSTTCCSCS-----------------------------------
T ss_pred             eeccCCCceEEEEE-ecCCcEEEEcC-CCeEEEEECCCCCceeee-----------------------------------
Confidence            34578888999999 88999988888 888888887654210000                                   


Q ss_pred             ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699           99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS  178 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  178 (458)
                                                              ......+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus        89 ----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~  128 (337)
T 1gxr_A           89 ----------------------------------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA  128 (337)
T ss_dssp             ----------------------------------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred             ----------------------------------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence                                                    1111236889999999999999999999999999999988


Q ss_pred             CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeeccc
Q 012699          179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR  258 (458)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  258 (458)
                      ++.........+...+.+++|+ ++++++++++.||.|++||+++++....+..+.  ..+.+++|+|++..+++++.+ 
T Consensus       129 ~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-  204 (337)
T 1gxr_A          129 PTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLD-  204 (337)
T ss_dssp             C--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT-
T ss_pred             CCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecC-
Confidence            7644333445567889999999 688899999999999999999999888877654  689999999999999999988 


Q ss_pred             CCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCe
Q 012699          259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAI  338 (458)
Q Consensus       259 ~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v  338 (458)
                                  |.|++||+++++....+.   +...+.+++|+|++++|++++.++.|++||+++++. ..+..|...|
T Consensus       205 ------------g~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v  268 (337)
T 1gxr_A          205 ------------NTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCV  268 (337)
T ss_dssp             ------------SEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCE
T ss_pred             ------------CcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccce
Confidence                        599999999998887775   456799999999999999999999999999998765 4678899999


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          339 SSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       339 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .+++|+|++++|++++.||.|++||+.+.+.....          .+...+.+++|+|++++|++++.||.|++|++.
T Consensus       269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999999999999999999999999987654321          255679999999999999999999999999973

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-39  Score=293.64  Aligned_cols=293  Identities=11%  Similarity=0.144  Sum_probs=250.1

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      ..+|.+|...|++++| ++++++|++|+.|+.+++|+...+.                                      
T Consensus        25 ~~~l~~h~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------------   65 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLNGE--------------------------------------   65 (369)
T ss_dssp             EEEEECCSSCEEEEEE-CTTSCEEEEEESSSCEEEEETTTCC--------------------------------------
T ss_pred             cEEEEEeeceEEEEEE-cCCCCEEEEEeCCCEEEEEeCCCch--------------------------------------
Confidence            4678999999999999 9999999999999999999865441                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                .+..+.+|.+.|.+++|+|++++|++++.||+|++||+
T Consensus        66 ------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           66 ------------------------------------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             ------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ------------------------------------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence                                                      33456689999999999999999999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCCce-----------eeeccCCCCCCcee
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAKRV-----------VCDLNTTDAFPSVL  240 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~  240 (458)
                      .+++...   ...+...+.+++|+ +++.++++++.+     |.|++||+..+..           ...+..+.....+.
T Consensus       104 ~~~~~~~---~~~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          104 SNGQCVA---TWKSPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             TTCCEEE---EEECSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             CCCcEEE---EeecCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            9887653   33477899999999 678899999998     9999999987642           22222333223799


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM  319 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v  319 (458)
                      +++|+|+++.+++++.+             |.|++||+++ .+....+.  .|...|.+++|+|++++|++++.||.|++
T Consensus       180 ~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v  244 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSID--LHEKSISDMQFSPDLTYFITSSRDTNSFL  244 (369)
T ss_dssp             EEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEe--cCCCceeEEEECCCCCEEEEecCCceEEE
Confidence            99999999999999888             5999999998 56666664  56778999999999999999999999999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--------------eEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG--------------KIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      ||+++++.+..+. +...+.+++|+|+++++++++.++              .+++||+.+.......         ..+
T Consensus       245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------~~~  314 (369)
T 3zwl_B          245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---------QGH  314 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE---------ECC
T ss_pred             EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---------ecc
Confidence            9999999888887 788999999999999999999988              8999999877554432         246


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      ...|.+++|+|++++|++++.||.|++|+++...
T Consensus       315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            7789999999999999999999999999998654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-41  Score=310.25  Aligned_cols=288  Identities=13%  Similarity=0.268  Sum_probs=245.2

Q ss_pred             CCCeEEEEeCCCCC-EEEEE----------eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          147 TSPISCCRFSSSGN-NIASA----------SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       147 ~~~v~~~~~~~~~~-~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      ...|.+++|+|+++ +|+++          +.|+.|++||+.++..........+...|.+++|+ +++.+|++++.||.
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS-HNNKIIAGALDNGS   90 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC-SSSSCEEEEESSSC
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC-CCCCeEEEEccCCe
Confidence            35688999999987 89999          88999999999877543233345577899999999 68889999999999


Q ss_pred             EEEEEcCC----CceeeeccCCCCCCceeeeeecCC-CCeEEEeecccCCCCcceeeccceeEEEEECCCCc------ee
Q 012699          216 IKAWNVDA----KRVVCDLNTTDAFPSVLDLKCSPV-EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK------AM  284 (458)
Q Consensus       216 i~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~------~~  284 (458)
                      |++||+.+    .+....+..+.  ..|.+++|+|+ +.++++++.+             |.|++||+.+++      ..
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~  155 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHS--SSVKTVKFNAKQDNVLASGGNN-------------GEIFIWDMNKCTESPSNYTP  155 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSS--SCCCEEEECSSSTTBEEEECSS-------------SCEEBCBTTTTSSCTTTCCC
T ss_pred             EEEeecccccccccchhhccCCc--cceEEEEEcCCCCCEEEEEcCC-------------CeEEEEECCCCccccccccc
Confidence            99999987    34666665554  78999999998 8899999887             599999999876      22


Q ss_pred             EEe-ecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCC------CCCeEEEEEcCCC-CEEEEecC
Q 012699          285 TVL-PLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAH------DSAISSILFGPDE-TSIFSLGS  355 (458)
Q Consensus       285 ~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~  355 (458)
                      ..+ ....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++ .+|++++.
T Consensus       156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  235 (416)
T 2pm9_A          156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG  235 (416)
T ss_dssp             BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred             cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence            222 23467788999999998 789999999999999999999998888876      7899999999997 68999999


Q ss_pred             CC---eEEEEeccCCCeeEEeecCCcccCCC-CCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCc
Q 012699          356 DG---KIIEWSLQNQGQVLWTRNCSRFCDPE-SSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA  430 (458)
Q Consensus       356 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~  430 (458)
                      |+   .|++||+++....        ..... .+...+.+++|+| ++++|++++.|+.|++||+.+.+.+..+.+|...
T Consensus       236 d~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          236 SDNDPSILIWDLRNANTP--------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             CSSSCCCCEEETTSTTSC--------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred             CCCCceEEEEeCCCCCCC--------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence            98   9999999975322        12223 5778899999999 9999999999999999999998887788899999


Q ss_pred             EEEEEECCCC-CeEEEecCCCcEEEEeCC
Q 012699          431 ITTVDWHPTL-PMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       431 v~~~~~~~~~-~~l~s~~~dg~v~iw~l~  458 (458)
                      |++++|+|++ .+|++++.||.|++|++.
T Consensus       308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             CCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             eEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            9999999999 799999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.4e-40  Score=296.05  Aligned_cols=289  Identities=13%  Similarity=0.138  Sum_probs=221.5

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCC-------cEEEEecCCCCCCCcc--------ccccCCCceEEEEEecCCCeEEEEE-
Q 012699          147 TSPISCCRFSSSGNNIASASVDG-------TVRIWTYDSSTPASRN--------ATIYCGTEIMSLEWECKSDRLLLIG-  210 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~-  210 (458)
                      .-||++++|+||+++|++|+.|.       .|++|++.........        ....+...+.+++++   +..+++| 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~   90 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC   90 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence            35899999999999999997543       5999999766543111        122344567788765   4455555 


Q ss_pred             ----------cCCCcEEEEEcCCCceee-------eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          211 ----------TADGGIKAWNVDAKRVVC-------DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       211 ----------~~dg~i~~wd~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                                +.|+.+++|++.......       ..........+..++|+|+|+++++++.+.           ++.|
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~-----------d~~i  159 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV-----------PAIM  159 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS-----------SCEE
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC-----------CCEE
Confidence                      457789999987653211       111222334588999999999987655321           1599


Q ss_pred             EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEE
Q 012699          274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      ++||+++++....+.   |...|.+++|+|+|++|++++.+ .+.+|+..+++.+.  ....|...|.+++|+|++++++
T Consensus       160 ~iwd~~~~~~~~~~~---~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          160 RIIDPSDLTEKFEIE---TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             EEEETTTTEEEEEEE---CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred             EEeECCCCcEEEEeC---CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence            999999999888774   45679999999999999998855 56777777766553  3457888999999999999999


Q ss_pred             EecCCC----eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CC
Q 012699          352 SLGSDG----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LP  426 (458)
Q Consensus       352 ~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~  426 (458)
                      +++.|+    .+++|++.........     ......+...|.+++|+|||++||+|+.|+.|+|||+.+.+.+..+ .+
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g  310 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTSVLR-----SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA  310 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEEEEE-----EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred             EEecCCcceeEEeecccccceeccee-----eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence            999887    6888998765432211     1112346678999999999999999999999999999998777664 58


Q ss_pred             CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          427 HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       427 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |...|++++|+|||++|||||.|++||||+|+
T Consensus       311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            99999999999999999999999999999984

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-39  Score=285.08  Aligned_cols=282  Identities=18%  Similarity=0.208  Sum_probs=238.6

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..+.+.+|.+.|++++| |++++|++++.||.|++||+.++....  ....+...|.+++|+ +++.++++++.||.++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT--VVYTGQGFLNSVCYD-SEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE--EEEECSSCEEEEEEE-TTTTEEEEEETTSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE--EeecCCccEEEEEEC-CCCCEEEEecCCCeEE
Confidence            477889999999999999 999999999999999999997765432  344567899999999 6889999999999999


Q ss_pred             EEEcCCC---ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          218 AWNVDAK---RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       218 ~wd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      +|++...   +....+..+  ...+.++.+  ++..+++++.+             |.|++||  .++....+.  .|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~l~~~~~d-------------~~i~~~d--~~~~~~~~~--~~~~  143 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGH--QGNVCSLSF--QDGVVISGSWD-------------KTAKVWK--EGSLVYNLQ--AHNA  143 (313)
T ss_dssp             EEETTCCTTSCC-CEECCC--SSCEEEEEE--ETTEEEEEETT-------------SEEEEEE--TTEEEEEEE--CCSS
T ss_pred             EEEeeecCCCCcccchhhc--ccCEEEEEe--cCCEEEEEeCC-------------CCEEEEc--CCcEEEecc--cCCC
Confidence            9998764   334444433  378999998  57788888888             5999999  445555554  5778


Q ss_pred             cEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699          295 AITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       295 ~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                      .+.+++|+| +++++++++.||.|++||  ..+....+.. |...+.+++|+|++. +++++.||.|++||+++.+....
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~  220 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT  220 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence            899999998 899999999999999999  4556666776 899999999999997 99999999999999998655433


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcE
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSV  452 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  452 (458)
                      .         ..+...+.+++|+|++ .|++++.|+.|++||+.+.+....+..|...|++++|+|+++ +++++.||.|
T Consensus       221 ~---------~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          221 Y---------EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             E---------ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred             h---------hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence            2         2466789999999999 588999999999999999887777788999999999999998 6679999999


Q ss_pred             EEEeCC
Q 012699          453 QVMSLS  458 (458)
Q Consensus       453 ~iw~l~  458 (458)
                      ++|+++
T Consensus       290 ~iw~~~  295 (313)
T 3odt_A          290 RIFSQE  295 (313)
T ss_dssp             EEEESC
T ss_pred             EEEeCC
Confidence            999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-39  Score=294.32  Aligned_cols=305  Identities=12%  Similarity=0.146  Sum_probs=247.1

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      .+..|..+|++++| ++++++|++|+.|+.+++|+...+.                                        
T Consensus         3 ~~~~~~~~i~~~~~-s~~~~~l~~~~~d~~v~i~~~~~~~----------------------------------------   41 (372)
T 1k8k_C            3 YHSFLVEPISCHAW-NKDRTQIAICPNNHEVHIYEKSGNK----------------------------------------   41 (372)
T ss_dssp             EEESCSSCCCEEEE-CTTSSEEEEECSSSEEEEEEEETTE----------------------------------------
T ss_pred             eecccCCCeEEEEE-CCCCCEEEEEeCCCEEEEEeCCCCc----------------------------------------
Confidence            35569999999999 9999999999999999999865441                                        


Q ss_pred             ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699           99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS  178 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  178 (458)
                                                            .+.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus        42 --------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C           42 --------------------------------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             --------------------------------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             --------------------------------------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence                                                  003445678999999999999999999999999999999987


Q ss_pred             CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699          179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      ++.........+...|.+++|+ +++++|++++.||.|++||++.+..   ...+. ..+...+.+++|+|++..+++++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEEc
Confidence            7644333345577889999999 6788999999999999999998763   22222 22347899999999999999999


Q ss_pred             cccCCCCcceeeccceeEEEEECC------------------CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMK------------------TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI  317 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  317 (458)
                      .+             |.|++||++                  .++....+  ..|...+.+++|+|++++|++++.||.|
T Consensus       162 ~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i  226 (372)
T 1k8k_C          162 CD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTV  226 (372)
T ss_dssp             TT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred             CC-------------CCEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence            88             599999964                  45555554  4677889999999999999999999999


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC--CCeeEE-ee--------------------
Q 012699          318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN--QGQVLW-TR--------------------  374 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~-~~--------------------  374 (458)
                      ++||+++++++..+..|..+|.+++|+|++++|+++ .|+.|++|++.+  +.-... ..                    
T Consensus       227 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (372)
T 1k8k_C          227 CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL  305 (372)
T ss_dssp             EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred             EEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence            999999999999999999999999999999888877 899999999987  310000 00                    


Q ss_pred             --cCCc-------ccCCCCCCCceeEEEEc-cCC---CEEEEEeCCccEEEEEccCCCc
Q 012699          375 --NCSR-------FCDPESSKSCRHEMALD-VNG---RRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       375 --~~~~-------~~~~~~~~~~v~~~~~s-~~g---~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                        ....       ......|...|.+++|. ++|   ++|++++.||.|++|++.+.+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence              0000       11123788899999966 676   9999999999999999977543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=291.31  Aligned_cols=208  Identities=16%  Similarity=0.234  Sum_probs=176.9

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      .+.+|.+.|++++|+|++++|++|+.|++|++||+.+++...  ....|...|.+++|+|.+..+|++++.|++|++||+
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            456899999999999999999999999999999999876643  344578899999999666678999999999999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      ++++....+....+...+.+++|+|++ .++++++.|             |.|++||+++++++..+.  +|...|++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-------------g~v~~wd~~~~~~~~~~~--~h~~~v~~v~  264 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-------------GTVSLVDTKSTSCVLSSA--VHSQCVTGLV  264 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-------------SEEEEEESCC--CCEEEE--CCSSCEEEEE
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccC-------------CcEEEEECCCCcEEEEEc--CCCCCEEEEE
Confidence            999998888766655678999999965 567778777             599999999999888775  6778899999


Q ss_pred             EccCC-CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCC
Q 012699          301 FNHNG-KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       301 ~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  367 (458)
                      |+|++ ++|++|+.|++|++||+++++.+ .+.+|.+.|++++|+|+++ +|++++.|++|++|++.+.
T Consensus       265 fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          265 FSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            99997 57999999999999999988754 5789999999999999886 5779999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-39  Score=297.03  Aligned_cols=293  Identities=12%  Similarity=0.134  Sum_probs=234.2

Q ss_pred             hhccccCCCcceeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           16 QLSRLKNNSETIKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ..+.+.+|...|++++| ++++ ++|++|+.|+++++|+...+...                                  
T Consensus        65 ~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------------------------------  109 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEW-HPTHPTTVAVGSKGGDIILWDYDVQNKT----------------------------------  109 (383)
T ss_dssp             EEEEECCCSSCEEEEEE-CSSCTTEEEEEEBTSCEEEEETTSTTCE----------------------------------
T ss_pred             eEEeccCCCCCEEEEEE-CCCCCCEEEEEcCCCeEEEEeCCCcccc----------------------------------
Confidence            35688899999999999 9999 99999999999999997654110                                  


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRI  173 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i  173 (458)
                                                                  ....+.+|.+.|.+++|+| ++++|++++.|++|++
T Consensus       110 --------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B          110 --------------------------------------------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             --------------------------------------------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             --------------------------------------------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence                                                        1112247999999999999 7899999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEE
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFV  252 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  252 (458)
                      ||+.+...........+...|.+++|+ +++.+|++++.|+.|++||+ +++.+..+..+.  ..|.+++|+|+++ .++
T Consensus       146 wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          146 RDFSGSVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK--AKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             EETTSCEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--SCEEEEEECSSCTTEEE
T ss_pred             EECCCCceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--CcEEEEEECCCCCCEEE
Confidence            999864322111112234679999999 67889999999999999999 466666666554  7899999999999 888


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCC----CceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCce
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKT----WKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQ  327 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~  327 (458)
                      +++.+             +.|++||+++    +.....+   .|...|.+++|+| ++++|++++.|+.|++||+++++.
T Consensus       222 s~~~d-------------~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          222 TSSVD-------------ATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEETT-------------SEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEeCC-------------CEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            88888             5999999997    4455544   4678899999999 999999999999999999999887


Q ss_pred             eeeeeCCC-----------------CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCcee
Q 012699          328 ITGWPAHD-----------------SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRH  390 (458)
Q Consensus       328 ~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  390 (458)
                      ...+..|.                 ..+..++|+|++++  +++.|+.|++||+.+++......       ...+...+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~-------~~~~~~~~~  356 (383)
T 3ei3_B          286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR-------DPNAAGIIS  356 (383)
T ss_dssp             CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC-------BTTBCSCCC
T ss_pred             ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec-------CCCCCceEE
Confidence            77766543                 34455777777766  78899999999999876543321       112455677


Q ss_pred             EEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          391 EMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       391 ~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      .++|+|++++|++++ |+.|++|++++
T Consensus       357 ~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          357 LNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCccEEEEec-CCcEEEEecCC
Confidence            789999999999997 89999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-39  Score=294.20  Aligned_cols=303  Identities=15%  Similarity=0.106  Sum_probs=225.4

Q ss_pred             cceeeeeeccCCCceeeeeecCc-------ceEEecccccccc--ccce-------------eeeeccCCceeeeeCCcc
Q 012699           25 ETIKYANIGQTKNSTLASGVNEE-------SLLLSTNSSEACA--TTAT-------------HMGSAEMGQTWASSRPAL   82 (458)
Q Consensus        25 ~~i~~~~~~s~~~~~l~s~~~d~-------~~~iw~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~   82 (458)
                      -+|.|++| +|||++||+|+.|.       .+++|+.......  ..+.             .+...+++..++......
T Consensus        15 ~PV~sv~f-s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           15 YPAYGAKF-LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SCEEEEEE-EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCEEEEEE-eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            47999999 99999999997644       5999998765432  1110             122233444444555555


Q ss_pred             ceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE
Q 012699           83 SRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI  162 (458)
Q Consensus        83 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  162 (458)
                      ...+++++.|+.+++|++.....    .......                     ........+...+.+++|+|||++|
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~~~~~v~fSpDg~~l  148 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVND----QLEFLTS---------------------VDFDASTNADDYTKLVYISREGTVA  148 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTT----EEEEEEE---------------------ECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred             ccEEEEecCCCcEEEEEecCCCc----eEEEeee---------------------eceeecCCcccCEEEEEEcCCCCEE
Confidence            66667777778888887654221    0000000                     0011123456679999999999998


Q ss_pred             EEE--eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          163 ASA--SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       163 ~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      +++  +.|++|+|||+.+++...   ...+..+|.+++|+ ++++++++++. +.+.+|+..+++.........+...+.
T Consensus       149 a~as~~~d~~i~iwd~~~~~~~~---~~~~~~~V~~v~fs-pdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          149 AIASSKVPAIMRIIDPSDLTEKF---EIETRGEVKDLHFS-TDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             EEEESCSSCEEEEEETTTTEEEE---EEECSSCCCEEEEC-TTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             EEEECCCCCEEEEeECCCCcEEE---EeCCCCceEEEEEc-cCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEE
Confidence            654  478999999999877653   34577889999999 78889998885 467777777777665544444557899


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEE
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH  318 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  318 (458)
                      +++|+|++..+++++.+....         ..+++|++......  ....+..|...|++++|+|+|++||+|+.|+.|+
T Consensus       224 ~v~fspdg~~l~~~s~d~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGKG---------IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSCC---------EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             EEEEcCCCCEEEEEecCCcce---------eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence            999999999999998764211         26888998765542  2334457788899999999999999999999999


Q ss_pred             EEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          319 MFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       319 v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      |||+++++++..+ .+|..+|++++|+|||++|+++|.|++|+|||+...
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999998875 789999999999999999999999999999999753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-38  Score=293.47  Aligned_cols=284  Identities=14%  Similarity=0.254  Sum_probs=235.6

Q ss_pred             eeccCCCCe--EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          142 TFLGHTSPI--SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       142 ~~~~h~~~v--~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      ...+|...+  .+++|++  ..+++++.|+.|++||+.+++.... ....+...|.+++|+ +++.+|++++.||.|++|
T Consensus        86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~-~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw  161 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSAL-AETDESTYVASVKWS-HDGSFLSVGLGNGLVDIY  161 (401)
T ss_dssp             ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEE-EECCTTCCEEEEEEC-TTSSEEEEEETTSCEEEE
T ss_pred             eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEe-eecCCCCCEEEEEEC-CCCCEEEEECCCCeEEEE
Confidence            344676664  4566664  5688889999999999998876532 223367889999999 688899999999999999


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEE
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~  298 (458)
                      |+.+++.+..+..+.  ..+.+++|  ++..+++++.+             |.|++||++. ......+  ..|...|.+
T Consensus       162 d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~--~~~~~~v~~  222 (401)
T 4aez_A          162 DVESQTKLRTMAGHQ--ARVGCLSW--NRHVLSSGSRS-------------GAIHHHDVRIANHQIGTL--QGHSSEVCG  222 (401)
T ss_dssp             ETTTCCEEEEECCCS--SCEEEEEE--ETTEEEEEETT-------------SEEEEEETTSSSCEEEEE--ECCSSCEEE
T ss_pred             ECcCCeEEEEecCCC--CceEEEEE--CCCEEEEEcCC-------------CCEEEEecccCcceeeEE--cCCCCCeeE
Confidence            999999888887554  78999999  45788888888             5999999994 4444444  367789999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCC-EEEEec--CCCeEEEEeccCCCeeEEeec
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET-SIFSLG--SDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      ++|+|++++|++|+.||.|++||+++++++..+..|...|.+++|+|++. ++++++  .|+.|++||+.+.......  
T Consensus       223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--  300 (401)
T 4aez_A          223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--  300 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--
T ss_pred             EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--
Confidence            99999999999999999999999999999999999999999999999765 556654  7999999999987554432  


Q ss_pred             CCcccCCCCCCCceeEEEEccCCCEEEEEe--CCccEEEEEccCCCcc--cccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699          376 CSRFCDPESSKSCRHEMALDVNGRRLLVTS--GSVRAPIYQVRGHASG--MRTLPHGAAITTVDWHPTLPMFLTGSADHS  451 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  451 (458)
                              .+...+.+++|+|++++|++++  .++.|++|++.+....  ..+.+|...|.+++|+|++++|++++.||.
T Consensus       301 --------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          301 --------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             --------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             --------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence                    1345699999999999999954  7999999999885433  334589999999999999999999999999


Q ss_pred             EEEEeCC
Q 012699          452 VQVMSLS  458 (458)
Q Consensus       452 v~iw~l~  458 (458)
                      |++|++.
T Consensus       373 i~iw~~~  379 (401)
T 4aez_A          373 LKFWRVY  379 (401)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=295.55  Aligned_cols=284  Identities=12%  Similarity=0.190  Sum_probs=240.1

Q ss_pred             ccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEec----CCCCC------CCcccc--c------cCCCceEEEEEecCCC
Q 012699          144 LGHTSPISCCRFSSSGN-NIASASVDGTVRIWTY----DSSTP------ASRNAT--I------YCGTEIMSLEWECKSD  204 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~----~~~~~------~~~~~~--~------~~~~~v~~~~~~~~~~  204 (458)
                      ..|.++|++++|+|+++ +|++|+.||.|++|++    .+++.      ......  .      .+...|.+++|+ +++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~  120 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDG  120 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCC
Confidence            45679999999999999 9999999999999999    77662      111111  0      135589999999 688


Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      ++|++++.||.|++|| .+++....+..+.  ..+.+++|+|++..+++++.+             |.|++||+.+++..
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVE-------------NVTILWNVISGTVM  184 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETT-------------CCEEEEETTTTEEE
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecC-------------CeEEEEECCCCcEE
Confidence            9999999999999999 6677777776554  789999999999999999888             59999999999888


Q ss_pred             EEeecCCCCCc---------------EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699          285 TVLPLGEDPPA---------------ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       285 ~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (458)
                      ..+...  ...               +.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++
T Consensus       185 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  261 (425)
T 1r5m_A          185 QHFELK--ETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL  261 (425)
T ss_dssp             EEECCC-----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred             EEeecc--ccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence            877533  233               8899999985 6888999999999999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699          350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      |++++.|+.|++||+++.......         ..+...+.+++|+|++ ++++++.++.|++||+.+......+..|..
T Consensus       262 l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  331 (425)
T 1r5m_A          262 LLSASDDGTLRIWHGGNGNSQNCF---------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV  331 (425)
T ss_dssp             EEEEETTSCEEEECSSSBSCSEEE---------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEEEcCCCEEEEEECCCCccceEe---------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence            999999999999999875433221         2466789999999999 999999999999999998877777778999


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .|.+++|+|++++|++++.||.|++|++
T Consensus       332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          332 PIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            9999999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.9e-39  Score=294.44  Aligned_cols=306  Identities=15%  Similarity=0.162  Sum_probs=243.5

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccccc---ceeeeeccCCceeeeeCCcc----c---eeE
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATT---ATHMGSAEMGQTWASSRPAL----S---RFA   86 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~---~~l   86 (458)
                      ...|.+|...|++++| ++  .+|++|+.|+++++|+...+.....   +..+ .........+.+.++    +   .++
T Consensus         9 ~~~~~~h~~~i~~~~~-~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSA-CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEE-CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEe-cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEE
Confidence            4578899999999999 77  8999999999999999998762111   1111 112233445666666    7   899


Q ss_pred             eeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccC-----CCCeEEEEeC----C
Q 012699           87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGH-----TSPISCCRFS----S  157 (458)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~  157 (458)
                      ++++.|+.+++|++......                             .......+.+|     ...|.+++|+    |
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDET-----------------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTT-----------------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             EEEcCCCCEEEEEccCCccc-----------------------------ccccceeecccccccCCCcEEEEEEeeccCC
Confidence            99999999999998663310                             00024566677     5999999999    9


Q ss_pred             CCCE-EEEEeCCCcEEEEecCC------CCCCC-----cccc-----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          158 SGNN-IASASVDGTVRIWTYDS------STPAS-----RNAT-----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       158 ~~~~-l~s~~~dg~v~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      ++++ |++++.||.|++||+.+      .+...     ....     ..+...+.+++|+ +++ ++++++.||.|++||
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEE
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEE
Confidence            9999 99999999999999987      55443     1111     3367789999999 566 999999999999999


Q ss_pred             cCCCceeeeccC---C-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC-----
Q 012699          221 VDAKRVVCDLNT---T-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE-----  291 (458)
Q Consensus       221 ~~~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~-----  291 (458)
                      +++++.+..+..   + .....+.+++|+|++..+++++.+.          ..|.|++||+++++....+....     
T Consensus       214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~----------~~g~i~i~d~~~~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN----------SFGCITLYETEFGERIGSLSVPTHSSQA  283 (397)
T ss_dssp             TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET----------TEEEEEEEETTTCCEEEEECBC------
T ss_pred             CCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC----------CCceEEEEECCCCcccceeccCcccccc
Confidence            999998888776   3 0036899999999999999998761          00399999999998888775311     


Q ss_pred             ------CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee------CC---------------CCCeEEEEEc
Q 012699          292 ------DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP------AH---------------DSAISSILFG  344 (458)
Q Consensus       292 ------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~---------------~~~v~~~~~~  344 (458)
                            |...|.+++|+|++++|++++.||.|++||+++++.+..+.      .|               ..+|.+++|+
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~  363 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  363 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence                  67889999999999999999999999999999999999999      88               9999999999


Q ss_pred             CCC----------CEEEEecCCCeEEEEeccCC
Q 012699          345 PDE----------TSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       345 ~~~----------~~l~~~~~dg~i~iwd~~~~  367 (458)
                      |++          ++|++++.||.|++|++.++
T Consensus       364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          364 KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            998          79999999999999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.9e-38  Score=290.64  Aligned_cols=278  Identities=17%  Similarity=0.263  Sum_probs=231.9

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      ..+.|+|+++ +.||+|. |++|+|||..+++.........+...|.+++|+ +++++|++|+.||.|++||+++++.+.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            4678999986 4777664 999999999998766443444566789999999 788999999999999999999999998


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                      .+..+.  ..+.++.+  ++..+++++.+             +.+++||......... .+..|...+..+.++|+++++
T Consensus       184 ~~~~h~--~~v~~~s~--~~~~l~sgs~d-------------~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          184 NMTSHS--ARVGSLSW--NSYILSSGSRS-------------GHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             EECCCS--SCEEEEEE--ETTEEEEEETT-------------SEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEE
T ss_pred             EEeCCC--CceEEEee--CCCEEEEEeCC-------------CceeEeeecccceeeE-EecccccceeeeeecCCCCee
Confidence            887665  56777665  56788988888             5999999987544322 234788889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCCC-EEEE--ecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          309 AASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDET-SIFS--LGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       309 ~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      ++++.|+.+++|+..+++    .+.....|...|.+++|+|++. .+++  |+.|++|++||+.++.......       
T Consensus       246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-------  318 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------  318 (420)
T ss_dssp             EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-------
T ss_pred             eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-------
Confidence            999999999999998764    3556778999999999999654 5544  4679999999999875544322       


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEe--CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTS--GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                         ....+..+.|+|+++.+++++  .|+.|+|||+.+.+.+..+.+|.+.|++++|+|+|++||||+.|++|+|||+
T Consensus       319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence               334688999999999998876  6899999999999888888899999999999999999999999999999997

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.4e-39  Score=300.28  Aligned_cols=297  Identities=14%  Similarity=0.172  Sum_probs=225.3

Q ss_pred             ccccCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           18 SRLKNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +...+|...|+|++| +| ++.+||+|+.|++|+|||+..+...                                    
T Consensus       113 ~~~~~~~~~V~~l~~-~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------  155 (435)
T 4e54_B          113 QKAAPFDRRATSLAW-HPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------  155 (435)
T ss_dssp             CEEEECSSCEEEEEE-CSSCTTCEEEEETTSCEEEECSSCCSCC------------------------------------
T ss_pred             ccCCCCCCCEEEEEE-eCCCCCEEEEEeCCCEEEEEECCCCCce------------------------------------
Confidence            345578889999999 87 5679999999999999987655100                                    


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEe
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWT  175 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd  175 (458)
                                                                ....+.+|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus       156 ------------------------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          156 ------------------------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             ------------------------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             ------------------------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence                                                      2223558999999999998 689999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEe
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSA  254 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  254 (458)
                      +++...............+.+++|+ +++.+|++|+.||.|++||++. +.+..+..+.  ..|.+++|+|++. +++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~--~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHK--KKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCS--SCEEEEEECTTCSSEEEEE
T ss_pred             ccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccCc-ceeEEEeccc--ceEEeeeecCCCceEEEEe
Confidence            9765432211112233457889999 7889999999999999999875 4445555443  7899999999987 56677


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  333 (458)
                      +.|             +.|++||+++.+....+ ...+|...|++++|+|++++|++++.||.|++||+++++....+..
T Consensus       270 s~d-------------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~  336 (435)
T 4e54_B          270 SVD-------------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP  336 (435)
T ss_dssp             ETT-------------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred             cCc-------------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence            777             59999999987655443 2346788999999999999999999999999999999888777766


Q ss_pred             CCC------CeEEEEEcCCCCEEEEec------------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE-EE
Q 012699          334 HDS------AISSILFGPDETSIFSLG------------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM-AL  394 (458)
Q Consensus       334 ~~~------~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~  394 (458)
                      |..      .+....|+|++..+++++            .++.|++||..++.......        ..+...|.++ +|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--------~~~~~~v~s~~~f  408 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--------DPESSGISSLNEF  408 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--------CSSCCCCCCEEEE
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--------CCCCCcEEEEEEE
Confidence            543      233456777766666553            34579999999876544321        1355567776 69


Q ss_pred             ccCCCEEEEEeCCccEEEEEccCCC
Q 012699          395 DVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       395 s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      +|+|++|++|+ |+.|+||+++.++
T Consensus       409 spdg~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          409 NPMGDTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             CTTSSCEEEEC-SSEEEECCCC---
T ss_pred             CCCCCEEEEEc-CCcEEEEECCcCe
Confidence            99999999876 7789999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=288.35  Aligned_cols=305  Identities=15%  Similarity=0.207  Sum_probs=238.3

Q ss_pred             ccccCCCcceeeeeeccCCCc-eeeeeec---CcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699           18 SRLKNNSETIKYANIGQTKNS-TLASGVN---EESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND   93 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~-~l~s~~~---d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   93 (458)
                      ..+.+|...|.+++| +|++. ++++|+.   |+.+++|+...+..                                  
T Consensus        12 ~~~~~h~~~v~~~~~-~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----------------------------------   56 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKW-VPCSAKFVTMGNFARGTGVIQLYEIQHGDL----------------------------------   56 (357)
T ss_dssp             EEEEECSSCEEEEEE-CTTSSEEEEEEC--CCCEEEEEEEECSSSE----------------------------------
T ss_pred             hhccCCCCceEEEEE-cCCCceEEEecCccCCCcEEEEEeCCCCcc----------------------------------
Confidence            456789999999999 99885 5556665   88999998765410                                  


Q ss_pred             cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC---CCEEEEEeCCCc
Q 012699           94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS---GNNIASASVDGT  170 (458)
Q Consensus        94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~  170 (458)
                                                                   ......+|..+|.+++|+|+   +++|++|+.||.
T Consensus        57 ---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           57 ---------------------------------------------KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             ---------------------------------------------EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             ---------------------------------------------cceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence                                                         00111268899999999998   699999999999


Q ss_pred             EEEEecCCCCCCCccccccCCCceEEEEEec-----CCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCC--CCceeee
Q 012699          171 VRIWTYDSSTPASRNATIYCGTEIMSLEWEC-----KSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDA--FPSVLDL  242 (458)
Q Consensus       171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~--~~~v~~~  242 (458)
                      |++||+.+++.. ......|...|.++.|.+     +++++|++++.||.|++||+.+++ ....+..+..  ...+.++
T Consensus        92 i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           92 LHIWNLEAPEMP-VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EEEECTTSCSSC-SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EEEEeCCCCCcc-EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            999999887622 223445778899997653     678899999999999999999886 5665554332  2368888


Q ss_pred             e----ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc---CCCEEEEEecCC
Q 012699          243 K----CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH---NGKILAASAVDG  315 (458)
Q Consensus       243 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg  315 (458)
                      .    |+|++..+++++.+             |.|++||+++++.....   .+...+.+++|+|   ++.+|++++.||
T Consensus       171 ~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMALRWET---NIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             EEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEEEEEE---ECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             EEEeccCCCCCEEEEEccC-------------CeEEEEECccCceeeec---CCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            7    78999999999988             59999999998875544   4567899999999   999999999999


Q ss_pred             eEEEEeCCCCceeeeee-----CCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEEeecC----------Ccc
Q 012699          316 MIHMFDMSAGLQITGWP-----AHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNC----------SRF  379 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~  379 (458)
                      .|++||+++++....+.     +|...|.+++|+|+++ +|++++.||.|++||++...........          ...
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~  314 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL  314 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence            99999999877666555     8999999999999998 8999999999999999865433110000          011


Q ss_pred             cCCCCCCCceeEEEEccCCCEEE-EEeCCccEEEEEccCCC
Q 012699          380 CDPESSKSCRHEMALDVNGRRLL-VTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~i~i~~~~~~~  419 (458)
                      .....+...|.+++|+|++++|+ +++.|+.|++|++....
T Consensus       315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            12335778899999999999998 79999999999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-39  Score=288.92  Aligned_cols=256  Identities=13%  Similarity=0.182  Sum_probs=202.6

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEE
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd  220 (458)
                      .+.+|.++|++++|+|+|++|++|+.|++|++||+.++..........|..+|.+++|+|+ ++++|++++.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4679999999999999999999999999999999987643222234567889999999854 578999999999999999


Q ss_pred             cCCCc--eeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCcee-EEeecCCCCCc
Q 012699          221 VDAKR--VVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM-TVLPLGEDPPA  295 (458)
Q Consensus       221 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~-~~~~~~~~~~~  295 (458)
                      +++++  ....+..  +...|.+++|+|+  +.++++++.|             |.|++||++..... .......|...
T Consensus        88 ~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D-------------~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           88 EENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSD-------------GAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             CSSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSS-------------SCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             CCCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCC-------------CCEEEEecCCCCCcceeeeeccccCC
Confidence            99874  3344443  4478999999998  7789999988             59999999876432 22334577788


Q ss_pred             EEEEEEccC-----------------CCEEEEEecCCeEEEEeCCCC---ceeeeeeCCCCCeEEEEEcCCC----CEEE
Q 012699          296 ITSLCFNHN-----------------GKILAASAVDGMIHMFDMSAG---LQITGWPAHDSAISSILFGPDE----TSIF  351 (458)
Q Consensus       296 i~~~~~~~~-----------------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~  351 (458)
                      +.+++|+|+                 +++|++|+.|+.|++||++..   +++..+.+|...|.+++|+|++    ++|+
T Consensus       153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la  232 (316)
T 3bg1_A          153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA  232 (316)
T ss_dssp             BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred             cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence            999999997                 468999999999999999754   4677888999999999999986    7899


Q ss_pred             EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          352 SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       352 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      +++.|++|++|++.+......     .......+...|.+++|+|++++|++++.|+.|++|+...
T Consensus       233 s~s~D~~v~iw~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          233 SCSQDGRVFIWTCDDASSNTW-----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEETTCEEEEEECSSTTCCCC-----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEcCCCeEEEEEccCccccch-----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            999999999999976321000     0000123567899999999999999999999999999853

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=304.84  Aligned_cols=337  Identities=9%  Similarity=0.010  Sum_probs=237.3

Q ss_pred             CCcceeeeeeccCCC---------ceeee-------------------eecCcceEEecccccccc-----------ccc
Q 012699           23 NSETIKYANIGQTKN---------STLAS-------------------GVNEESLLLSTNSSEACA-----------TTA   63 (458)
Q Consensus        23 h~~~i~~~~~~s~~~---------~~l~s-------------------~~~d~~~~iw~~~~~~~~-----------~~~   63 (458)
                      +...|.+++| +|++         ++||+                   ++.|++++||+...+...           +.+
T Consensus       132 ~~~~V~sv~w-~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAW-LNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV  210 (524)
T ss_dssp             CCC--CCCSC-EEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred             CCCceeEEEe-cccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence            5667888888 7776         66666                   557889999998776531           233


Q ss_pred             eeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee
Q 012699           64 THMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF  143 (458)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  143 (458)
                      ..+.|+|++     ...+++.+|++++.|+++++|++..........   .                    ........+
T Consensus       211 ~~v~wsp~~-----~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~---~--------------------~~~~p~~~l  262 (524)
T 2j04_B          211 WDLKWHEGC-----HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF---K--------------------MCEKPSLTL  262 (524)
T ss_dssp             EEEEECSSC-----CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE---E--------------------CCCSCSEEE
T ss_pred             EEEEECCCC-----CCCCCCceEEEEecCCeEEEEEcCCCccccccc---e--------------------eecCceEEE
Confidence            455566652     122346899999999999999986532110000   0                    000133467


Q ss_pred             ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEE--EecCCC-eEEEEEcCCCcEEEEE
Q 012699          144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE--WECKSD-RLLLIGTADGGIKAWN  220 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~-~~l~~~~~dg~i~~wd  220 (458)
                      .+|...|++++|+|++ .|++|+.||+|++||+.++... ......|...|.+++  |+ +++ .+|++++.|++|++||
T Consensus       263 ~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          263 SLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             CCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEEC
T ss_pred             EcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEE
Confidence            8999999999999864 8999999999999999876432 222445778999994  45 665 8999999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      ++++++...+..+.....+.+++|+|++..+++++.+             +.|++||++++.....+.  +|...|++++
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d-------------~tv~lwd~~~~~~~~~l~--gH~~~V~sva  404 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA-------------SSLRAVPSRAAFAVHPLV--SRETTITAIG  404 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS-------------SEEEEEETTCTTCCEEEE--ECSSCEEEEE
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCC-------------CcEEEEECcccccceeee--cCCCceEEEE
Confidence            9988776555544322357899999999999998887             499999999988777664  6888999999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-----CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-----HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      |+|++++|++|+.||+|++||+..+ .+..+..     +...+.+++|+|++..+. ...+  +.+|+....+.      
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~------  474 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDV------  474 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC------------
T ss_pred             eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCc------
Confidence            9999999999999999999998653 3322211     112578999999998552 2222  23333221111      


Q ss_pred             CCcccCCCCCCCceeEEEEccCCC---EEEEEeCCccEEEEEccCC
Q 012699          376 CSRFCDPESSKSCRHEMALDVNGR---RLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~i~i~~~~~~  418 (458)
                        ......++...|.+++|+|+++   .+|+|+.+|.|+||++...
T Consensus       475 --~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          475 --SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             --ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence              1222346778899999999964   9999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=277.21  Aligned_cols=277  Identities=16%  Similarity=0.255  Sum_probs=229.5

Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      .++|+||+++ +||+| .|++|+|||+.+++.........|...|.+++|+ +++++|++|+.||+|++||+++++.+..
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            5789999986 67665 5999999999998876544444567789999999 7889999999999999999999999988


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (458)
                      +..+.  ..+.+  +++++..+++++.+             +.+++|+.......... +..|...+..+.+++++++|+
T Consensus       105 ~~~h~--~~~~~--~~~~~~~l~s~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  166 (318)
T 4ggc_A          105 MTSHS--ARVGS--LSWNSYILSSGSRS-------------GHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLA  166 (318)
T ss_dssp             EECCS--SCEEE--EEEETTEEEEEETT-------------SEEEEEETTSSSCEEEE-EECCSSCEEEEEECTTSSEEE
T ss_pred             ecCcc--ceEEE--eecCCCEEEEEecC-------------CceEeeecCCCceeEEE-EcCccCceEEEEEcCCCCEEE
Confidence            87665  44544  45567788888887             59999998875543322 346778899999999999999


Q ss_pred             EEecCCeEEEEeCCCCce----eeeeeCCCCCeEEEEEcCCCCEE---EEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699          310 ASAVDGMIHMFDMSAGLQ----ITGWPAHDSAISSILFGPDETSI---FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP  382 (458)
Q Consensus       310 ~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  382 (458)
                      +++.||.|++||+++++.    ......|.+.|.+++++|++..+   ++++.++.|++||..........         
T Consensus       167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---------  237 (318)
T 4ggc_A          167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------  237 (318)
T ss_dssp             EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---------
T ss_pred             EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---------
Confidence            999999999999987653    34556788899999999976533   46778999999999876554432         


Q ss_pred             CCCCCceeEEEEccCCCEEEEEe--CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTS--GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                       .+...+..+.|+|+++.+++++  .|+.|++||+.+.+.+..+.+|.+.|++++|+|++++|||||.||+|+|||+
T Consensus       238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence             2445689999999999988765  6899999999999888888899999999999999999999999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-37  Score=274.11  Aligned_cols=290  Identities=18%  Similarity=0.260  Sum_probs=239.7

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      +.++.|.+|...|++++|  +++++|++|+.|+.+++|+...+.                                    
T Consensus         9 ~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~------------------------------------   50 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQW------------------------------------   50 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSE------------------------------------
T ss_pred             HHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCE------------------------------------
Confidence            356789999999999999  788899999999999999864431                                    


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                                  ....+..|.+.|.+++|+|++++|++++.||.|++|
T Consensus        51 --------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A           51 --------------------------------------------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             --------------------------------------------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             --------------------------------------------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence                                                        233455788999999999999999999999999999


Q ss_pred             ecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEE
Q 012699          175 TYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFV  252 (458)
Q Consensus       175 d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~  252 (458)
                      ++....... ......+...|.+++|.   +.++++++.||.|++||  .++....+..+.  ..+.++.+.| ++..++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEEEEEEEETTTTEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCC--CceeEEEEccCCCCEEE
Confidence            987654322 22334567889999995   56899999999999999  566666666554  6899999988 888999


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP  332 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  332 (458)
                      +++.+             |.|++||.  .+....+. ..+...+.+++|+|++. +++++.||.|++||+++++.+..+.
T Consensus       160 ~~~~d-------------~~i~i~d~--~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          160 TASAD-------------KTIKLWQN--DKVIKTFS-GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EEETT-------------SCEEEEET--TEEEEEEC-SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECC-------------CCEEEEec--CceEEEEe-ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence            99888             59999993  34555543 23778899999999998 9999999999999999999999999


Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      .|...|.+++|+|++ .|++++.||.|++||+.+.+.....         ..+...+.+++|+|+++ +++++.|+.|++
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i  291 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI---------TLPAISIWSVDCMSNGD-IIVGSSDNLVRI  291 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE---------ECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred             cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE---------eccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence            999999999999999 6889999999999999987544332         13456799999999998 567999999999


Q ss_pred             EEccCCCcc
Q 012699          413 YQVRGHASG  421 (458)
Q Consensus       413 ~~~~~~~~~  421 (458)
                      |++++....
T Consensus       292 w~~~~~~~~  300 (313)
T 3odt_A          292 FSQEKSRWA  300 (313)
T ss_dssp             EESCGGGCC
T ss_pred             EeCCCCcee
Confidence            999876543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=288.08  Aligned_cols=344  Identities=12%  Similarity=0.122  Sum_probs=238.5

Q ss_pred             hhccccCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           16 QLSRLKNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      ....+.+|...|++++| +| ++++|++|+.|+.+++|+...+.............                        
T Consensus        35 ~~~~~~~h~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------------------------   89 (408)
T 4a11_B           35 DRDVERIHGGGINTLDI-EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS------------------------   89 (408)
T ss_dssp             TEEECCCCSSCEEEEEE-CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE------------------------
T ss_pred             ceeeeeccCCcEEEEEE-ecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc------------------------
Confidence            34567889999999999 99 99999999999999999988763321111000000                        


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRI  173 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i  173 (458)
                                                                 .......+|...|.+++|+| ++++|++++.||.|++
T Consensus        90 -------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i  126 (408)
T 4a11_B           90 -------------------------------------------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV  126 (408)
T ss_dssp             -------------------------------------------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred             -------------------------------------------ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence                                                       00011246999999999999 7889999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecC--CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe-
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECK--SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI-  250 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  250 (458)
                      ||+.+++...   ...+...+.++.|.|.  ++.++++++.||.|++||+++++....+..+.  ..+.+++|+|++.. 
T Consensus       127 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l  201 (408)
T 4a11_B          127 WDTNTLQTAD---VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR--QEILAVSWSPRYDYI  201 (408)
T ss_dssp             EETTTTEEEE---EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC--SCEEEEEECSSCTTE
T ss_pred             eeCCCCccce---eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC--CcEEEEEECCCCCcE
Confidence            9998876543   3446778899999854  44599999999999999999998888777655  68999999999994 


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEee-------------cCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLP-------------LGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                      +++++.+             |.|++||++++. ....+.             ...|...|.+++|+|++++|++++.||.
T Consensus       202 l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          202 LATASAD-------------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEEETT-------------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEcCC-------------CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            7788877             599999998765 222221             1357788999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeCCC-----CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          317 IHMFDMSAGLQITGWPAHD-----SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                      |++||+++++....+..+.     ..+........+..+++++.|+.|++||+.+.......         ..+...|.+
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~v~~  339 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---------KGHYKTVDC  339 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---------CCCSSCEEE
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---------ccCCCeEEE
Confidence            9999999887655443221     12222222334556777888999999999986554322         256788999


Q ss_pred             EEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC-CCeEEEecCCCcEEEEeC
Q 012699          392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT-LPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~l  457 (458)
                      ++|+|++++|++++.||.|++|++.+.+.+.....+.   ....+.|. ...+.+++.|+.+++|+.
T Consensus       340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred             EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecCC
Confidence            9999999999999999999999999886554333222   22333443 335667788999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.1e-38  Score=282.00  Aligned_cols=289  Identities=9%  Similarity=0.083  Sum_probs=236.1

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC-CccccccCCCceEEEEEecCCCe-EEEEEcCCCcEE
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA-SRNATIYCGTEIMSLEWECKSDR-LLLIGTADGGIK  217 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~  217 (458)
                      .....+|.+.|++++|+|++++|++++.|+.|++|++.++... .......+...|.+++|+ +++. +|++++.||.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI-DNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE-ESSSEEEEEEETTSCEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC-CCCCcEEEEEcCCCeEE
Confidence            3445689999999999999999999999999999999877621 112334677899999999 5678 999999999999


Q ss_pred             EEEc-CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC---------CceeEEe
Q 012699          218 AWNV-DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT---------WKAMTVL  287 (458)
Q Consensus       218 ~wd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~---------~~~~~~~  287 (458)
                      +||+ .+++. ..+....+...|.+++|+| +..+++++.+             |.|++||+++         +++...+
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~  147 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLNSNNT  147 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCeeeEE
Confidence            9999 87765 4444411447899999999 9999999988             5999999987         6655544


Q ss_pred             ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEe
Q 012699          288 PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  363 (458)
                      .   +...+.+++|+|++  +++++.|+.|++||+++ +..  ......|...+.+++|+| +++++++++.||.|++|+
T Consensus       148 ~---~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          148 K---VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             S---SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             e---eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence            3   66789999999987  99999999999999988 543  334557888999999999 999999999999999999


Q ss_pred             ccCC------CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEEEE
Q 012699          364 LQNQ------GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTVDW  436 (458)
Q Consensus       364 ~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~  436 (458)
                      +...      .................+...+.+++|+|++++|++++.||.|++||+.+.+.+..+.+| ...|++++ 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-  301 (342)
T 1yfq_A          223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-  301 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-
T ss_pred             EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-
Confidence            9876      222222111111112234558999999999999999999999999999998877777788 99999999 


Q ss_pred             CCCCCeEEEecCCCc
Q 012699          437 HPTLPMFLTGSADHS  451 (458)
Q Consensus       437 ~~~~~~l~s~~~dg~  451 (458)
                       |++++|++++.||.
T Consensus       302 -~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          302 -CSDNILCLATSDDT  315 (342)
T ss_dssp             -ECSSEEEEEEECTH
T ss_pred             -CCCCeEEEEecCCc
Confidence             99999999999998

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=291.94  Aligned_cols=296  Identities=15%  Similarity=0.248  Sum_probs=222.2

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC---------CccccccCC------------CceEEEEEecCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA---------SRNATIYCG------------TEIMSLEWECKS  203 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------~~~~~~~~~------------~~v~~~~~~~~~  203 (458)
                      .|.+.|++++|+|++++||+|+.||.|+|||+.++...         .......|.            ..|.+++|+|..
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            36789999999999999999999999999999876520         011223454            779999999543


Q ss_pred             C-eEEEEEcCCCcEEEEEcCCCceeee--------------------------------------ccCCCCCCceeeeee
Q 012699          204 D-RLLLIGTADGGIKAWNVDAKRVVCD--------------------------------------LNTTDAFPSVLDLKC  244 (458)
Q Consensus       204 ~-~~l~~~~~dg~i~~wd~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~  244 (458)
                      . .+|++++.|+.|++||+.++.....                                      .....+...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            2 7899999999999999987543211                                      111234578999999


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEe-----ecCCCCCcEEEEEEccCC-CEEEEEecCCeE
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVL-----PLGEDPPAITSLCFNHNG-KILAASAVDGMI  317 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~-----~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  317 (458)
                      +|++..++++ .|             |.|++||+++ .+....+     .+..|...|.+++|+|++ ++|++|+.||.|
T Consensus       186 ~~~~~~l~s~-~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          186 NSDYETYLSA-DD-------------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CTTSSEEEEE-CS-------------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             cCCCCEEEEe-CC-------------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            9999999998 56             5999999994 3344433     345678899999999998 999999999999


Q ss_pred             EEEeCCCCce----eeeeeCCCC------------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          318 HMFDMSAGLQ----ITGWPAHDS------------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       318 ~v~d~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      ++||+++++.    +..+..|..            .|.+++|+|++++|++++. +.|++||+++..........+....
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            9999999886    778888876            8999999999999999998 9999999986332221111111000


Q ss_pred             C-------CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc-------------------------------
Q 012699          382 P-------ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR-------------------------------  423 (458)
Q Consensus       382 ~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-------------------------------  423 (458)
                      .       ......+..++|+|++++|++++.|+.|++||+.+++....                               
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence            0       00000133499999999999999999999999987643210                               


Q ss_pred             -cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          424 -TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       424 -~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                       ...+...|.+++|+|++++||+++.++ +++|.
T Consensus       411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence             113456789999999999999998875 77776

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-39  Score=292.98  Aligned_cols=317  Identities=9%  Similarity=0.042  Sum_probs=238.5

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      -...|.+++| +|||+++||++.|++++  +.+.+...   .    ........+.+++++          ..+.|+++.
T Consensus        14 ~~~~v~sv~~-SpDG~~iASas~D~TV~--d~~~~~~l---~----gh~~~v~~V~FsPdg----------~~~~~~~~~   73 (588)
T 2j04_A           14 FEDWKNNLTW-ARDGTLYLTTFPDISIG--QPKYAKDI---N----CNSKNLFHVKEFPLE----------FENKLDFEL   73 (588)
T ss_dssp             CSSSSCCEEE-CTTSCEEEECSSSEEEE--EECCCSCC---S----SBGGGTEEEEEECCC----------CCCTTTTSC
T ss_pred             hhccEEEEEE-CCCCCEEEEEcCCceee--ccccccee---c----CCCccEEEEEECCCC----------CcceEEEEe
Confidence            3467999999 99999999999999999  54333222   0    112222233333333          444444433


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP  181 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  181 (458)
                      .+.                  .                ..+. +|...|.+++|||+|++||+++.||+|++||..+  .
T Consensus        74 ~~~------------------~----------------~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~  117 (588)
T 2j04_A           74 AQQ------------------N----------------GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M  117 (588)
T ss_dssp             CCS------------------S----------------CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E
T ss_pred             CCC------------------c----------------eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e
Confidence            220                  0                0111 4678899999999999999999999999999544  2


Q ss_pred             CCccccccCC-----CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-------eeecc--CCCCCCceeeeeecCC
Q 012699          182 ASRNATIYCG-----TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-------VCDLN--TTDAFPSVLDLKCSPV  247 (458)
Q Consensus       182 ~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~--~~~~~~~v~~~~~~~~  247 (458)
                      .   ....+.     ..+.+++|+ +++++|++|+.||+|++||+.++..       +.++.  ...|...|.+++|+|+
T Consensus       118 l---~~l~~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd  193 (588)
T 2j04_A          118 L---TNLDSKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED  193 (588)
T ss_dssp             E---EECCCSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred             e---eeccCCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence            1   111222     259999999 7899999999999999999998753       34442  1224478999999999


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCCCcee---EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM---TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA  324 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  324 (458)
                      +  +++++.|             +.+++||+..++..   ..+. ..|...|.+++|+  ++.|++++ ++.|++||+.+
T Consensus       194 g--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~  254 (588)
T 2j04_A          194 V--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN  254 (588)
T ss_dssp             E--EEEEETT-------------CCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT
T ss_pred             c--EEEEeCC-------------CeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC
Confidence            9  6777777             49999999887743   3332 3566789999999  68999887 69999999998


Q ss_pred             CceeeeeeCCCCCeEEEEE--cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699          325 GLQITGWPAHDSAISSILF--GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                      ++......+|.+.+..++|  +|++..|++++.||+ ++|....                         ++++||+..++
T Consensus       255 ~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------------------------~~~spd~~l~a  308 (588)
T 2j04_A          255 YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------------------------LHVTADNIIAP  308 (588)
T ss_dssp             TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------------------------EEEECCCSSHH
T ss_pred             CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------------------------EEECCCceEEE
Confidence            7764444489999999999  999999999999999 9999761                         56999999887


Q ss_pred             EEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          403 VTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       403 ~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      ..  |+++++|+..+.. .. ...+...|.+++|+|||+.+|+++.
T Consensus       309 ~~--d~~v~lW~~~g~~-l~-~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          309 YL--EKKFKKWSTIWNE-FN-NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HH--HHHHHHTTTTTTS-SS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             Ec--CCEEEEEECCCCc-ee-eeccceEEEEEEECCCCCEEEEEEe
Confidence            75  9999999987664 22 3344778999999999999998863

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.8e-37  Score=271.30  Aligned_cols=249  Identities=12%  Similarity=0.181  Sum_probs=205.1

Q ss_pred             ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC--ceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCc
Q 012699          188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK--RVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSS  263 (458)
Q Consensus       188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~  263 (458)
                      ..|...|.+++|+ +++++|++|+.|++|++||+..+  +.+..+..|.  .+|.+++|+++  +..+++++.|      
T Consensus         6 ~~h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D------   76 (297)
T 2pm7_B            6 NAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYD------   76 (297)
T ss_dssp             CSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETT------
T ss_pred             cCCcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCC------
Confidence            4577899999999 78899999999999999999754  5556666554  78999999864  7899999988      


Q ss_pred             ceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCCeE
Q 012699          264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAIS  339 (458)
Q Consensus       264 ~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~  339 (458)
                             |.|++||+++++......+..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+.+|...|.
T Consensus        77 -------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~  149 (297)
T 2pm7_B           77 -------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (297)
T ss_dssp             -------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred             -------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence                   5999999998754333334578889999999997  8899999999999999998753  2456789999999


Q ss_pred             EEEEcCC-------------CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC---CEEEE
Q 012699          340 SILFGPD-------------ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG---RRLLV  403 (458)
Q Consensus       340 ~~~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~  403 (458)
                      +++|+|+             +++|++++.|++|++||+++........     .....|...|.+++|+|++   ++|++
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-----~~l~~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-----EEecCCCCceEEEEECCCCCCceEEEE
Confidence            9999997             5799999999999999998754321110     1123578889999999985   89999


Q ss_pred             EeCCccEEEEEccCCCc-----ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          404 TSGSVRAPIYQVRGHAS-----GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       404 ~~~~~~i~i~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ++.|++|++|+++....     .....+|...|.+++|+|++++||+++.||.|+||++
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            99999999999987431     1112468899999999999999999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-38  Score=287.36  Aligned_cols=296  Identities=14%  Similarity=0.189  Sum_probs=232.2

Q ss_pred             cccCCCcceeeeeeccCC----CceeeeeecCcceEEeccccccccccceee-eeccCCceeeeeCCcc----ceeEeec
Q 012699           19 RLKNNSETIKYANIGQTK----NSTLASGVNEESLLLSTNSSEACATTATHM-GSAEMGQTWASSRPAL----SRFATNM   89 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~----~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~~~   89 (458)
                      .+.+|...|++++| +|+    ...+++++.++.+++|+...+.....+... ..........+.++.+    +.+++++
T Consensus        13 ~~~~h~~~v~~i~~-~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           13 LKEDHNQPLFGVQF-NWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EECTTCSCEEEEEE-CTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             eecCCCCceEEEEE-ecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            44589999999999 873    455666666779999999977655333321 1112233444555554    6799999


Q ss_pred             cCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCC
Q 012699           90 SGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVD  168 (458)
Q Consensus        90 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d  168 (458)
                      +.|+.+++|++....                                  .+..+.+|..+|.+++|+| ++++|++++.|
T Consensus        92 ~~dg~i~v~d~~~~~----------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d  137 (366)
T 3k26_A           92 GSRGIIRIINPITMQ----------------------------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKD  137 (366)
T ss_dssp             ETTCEEEEECTTTCC----------------------------------EEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred             cCCCEEEEEEchhce----------------------------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence            999999999976532                                  5566789999999999999 89999999999


Q ss_pred             CcEEEEecCCCCCCCcccc-ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC---------------
Q 012699          169 GTVRIWTYDSSTPASRNAT-IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT---------------  232 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---------------  232 (458)
                      |+|++||+.+++....... ..+...|.+++|+ +++.+|++++.||.|++||+++++....+..               
T Consensus       138 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
T 3k26_A          138 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS  216 (366)
T ss_dssp             SCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred             CeEEEEEeecCeEEEEecccccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence            9999999988765432211 3577899999999 6888999999999999999998765543321               


Q ss_pred             -----------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce------------eEEeec
Q 012699          233 -----------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA------------MTVLPL  289 (458)
Q Consensus       233 -----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~------------~~~~~~  289 (458)
                                 ..+...|.+++|+  +..+++++.+             |.|++||+.+++.            .....+
T Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  281 (366)
T 3k26_A          217 QKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE-------------NAIVCWKPGKMEDDIDKIKPSESNVTILGRF  281 (366)
T ss_dssp             EEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS-------------SEEEEEEESSTTCCGGGCCTTCCCEEEEEEE
T ss_pred             eeeccCccccccCCcceEEEEEEc--CCEEEEEecC-------------CEEEEEeCCCccccccccccCCcchheeccc
Confidence                       1134678999998  6788888887             5999999987654            222233


Q ss_pred             CCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCCcee----eeeeCC--CCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          290 GEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAGLQI----TGWPAH--DSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       290 ~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      ..|...|.+++|+|+  +++|++|+.||.|++||+.++++.    ..+..|  ...|.+++|+|++++|++++.||.|++
T Consensus       282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            466778999999999  999999999999999999987643    367777  789999999999999999999999999


Q ss_pred             Eecc
Q 012699          362 WSLQ  365 (458)
Q Consensus       362 wd~~  365 (458)
                      ||+.
T Consensus       362 wd~~  365 (366)
T 3k26_A          362 WDRL  365 (366)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            9985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-37  Score=282.05  Aligned_cols=294  Identities=17%  Similarity=0.213  Sum_probs=218.3

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecC-CCeEEEEEcCCCcEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIK  217 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~  217 (458)
                      ..+.+|.+.|++++|+|++++|++|+.||+|++||+.++....  ......|...|.+++|+|. ++.+|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            4567999999999999999999999999999999998764321  1223457789999999954 589999999999999


Q ss_pred             EEEcCCC---------ceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          218 AWNVDAK---------RVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       218 ~wd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      +||++++         +....+..+.  ..+.+++|+|+  +..+++++.+             |.|++||+++++....
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLGLKLACLGND-------------GILRLYDALEPSDLRS  149 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT-------------CEEEEEECSSTTCTTC
T ss_pred             EEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCCcEEEEecCC-------------CcEEEecCCChHHhcc
Confidence            9999887         3455554443  78999999999  9999999988             5999999988775443


Q ss_pred             ee-----------cCCCCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCC---
Q 012699          287 LP-----------LGEDPPAITSLCFNHN---GKILAASAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDE---  347 (458)
Q Consensus       287 ~~-----------~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~---  347 (458)
                      +.           ...+...+.+++|+|+   +.++++++.++.+.+|+...++.  +..+.+|...|.+++|+|++   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence            32           1246678999999997   89999999999998888877665  67788999999999999998   


Q ss_pred             -CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe----CCccEEEEEccCCCccc
Q 012699          348 -TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS----GSVRAPIYQVRGHASGM  422 (458)
Q Consensus       348 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~~i~i~~~~~~~~~~  422 (458)
                       ++|++++.||.|++||++.........         ...........++....++.+.    ....+.+|+........
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASE---------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS  300 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEEE
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccC---------CcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence             899999999999999998754322111         1112223333344444444333    23445566655555566


Q ss_pred             ccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          423 RTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       423 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+.+|...|++++|+|++++|++++.||.|+||+++
T Consensus       301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            667899999999999999999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-36  Score=285.75  Aligned_cols=284  Identities=14%  Similarity=0.251  Sum_probs=237.0

Q ss_pred             eeeeeccCCCCe-EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          139 FLETFLGHTSPI-SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       139 ~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      ....+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++...  ....|...|.+++|+ +++ ++++|+.||+|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~--~~~~h~~~V~~l~~~-~~~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYA-HGG-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEC-STT-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE--EEeCCCcCEEEEEEc-CCC-EEEEEeCCCCEE
Confidence            456788999885 66666  56799999999999999998877543  334578899999998 444 899999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeec--CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE----------
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCS--PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT----------  285 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~----------  285 (458)
                      +||+++++....+..+.  ..|.++++.  +++..+++++.+             |.|++||+++.....          
T Consensus       187 vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          187 VWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRD-------------NTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             EEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETT-------------SCEEEEECCCCCCC------CCSSE
T ss_pred             EEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCC-------------CcEEEeeCCCCcccccccccCCcce
Confidence            99999999888887655  789999888  577889999988             599999998866432          


Q ss_pred             -----------EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec
Q 012699          286 -----------VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       286 -----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  354 (458)
                                 .....+|...+.++  +++++++++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence                       12234676777766  67789999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV  434 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~  434 (458)
                      .||.|++||++++......         ..+...+.+++|+  +++|++++.|+.|++||+.+...... ..|...+..+
T Consensus       330 ~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~~~~  397 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTL---------QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAIT  397 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-EECTTCCCEE
T ss_pred             CCCcEEEEECCCCcEEEEE---------eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-ecCCCCccEE
Confidence            9999999999876544322         2467789999997  58999999999999999988654332 2467788889


Q ss_pred             EECCCCCeEEEecCCCcEEEEeCC
Q 012699          435 DWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       435 ~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +|+|++++|++++ ||.|++||+.
T Consensus       398 ~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          398 TFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEEECSSEEEEEE-TTEEEEEETT
T ss_pred             EEEeCCCEEEEec-CCeEEEEECC
Confidence            9999999999998 8999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-37  Score=282.04  Aligned_cols=259  Identities=14%  Similarity=0.257  Sum_probs=216.0

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIK  217 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~  217 (458)
                      .+..+.+|.+.|++++|+|++++|++|+.||.|++||+.............|...|.+++|+|+ ++.+|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            4567889999999999999999999999999999999975433323334457789999999843 388999999999999


Q ss_pred             EEEcCCCc--eeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          218 AWNVDAKR--VVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       218 ~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +||+.+++  ....+..  +...+.+++|+|+  +..+++++.+             |.|++||+++...........|.
T Consensus        83 iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             EEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEEEECCT
T ss_pred             EEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecCC-------------CcEEEEecCCCCceeeEEecCCC
Confidence            99999987  4444443  4478999999999  8999999988             59999999988665555556788


Q ss_pred             CcEEEEEEcc-------------CCCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCC---CCEEEEe
Q 012699          294 PAITSLCFNH-------------NGKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPD---ETSIFSL  353 (458)
Q Consensus       294 ~~i~~~~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~l~~~  353 (458)
                      ..|.+++|+|             ++.+|++++.||.|++||++++.    ....+.+|...|.+++|+|+   +++|+++
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            8999999999             69999999999999999998764    45677889999999999999   8999999


Q ss_pred             cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       354 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      +.||.|++||+.+.......    .......+...+.+++|+|+|++|++++.||.|++|++.
T Consensus       228 ~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWKK----TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCEE----EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCcccee----eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99999999999976432111    122233567789999999999999999999999999987

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=291.09  Aligned_cols=309  Identities=13%  Similarity=0.134  Sum_probs=238.0

Q ss_pred             Hhhccc-cCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccce-eeeeccCCceeeeeCCccceeEeeccC
Q 012699           15 AQLSRL-KNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTAT-HMGSAEMGQTWASSRPALSRFATNMSG   91 (458)
Q Consensus        15 ~~~~~l-~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   91 (458)
                      +.+..+ .+|...|++++| ++ ++++||+|+.|+++++|+........... .......+....+.+.+++.++++++.
T Consensus        53 ~~~~~~~~~h~~~V~~~~~-s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAV-SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEE-ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEeeeccCCCCceEEEEE-CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            345677 899999999999 99 99999999999999999998722111110 111123445566777788899999999


Q ss_pred             CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee--cc--CCCCeEEEE--eCCCCCEEEEE
Q 012699           92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF--LG--HTSPISCCR--FSSSGNNIASA  165 (458)
Q Consensus        92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~--h~~~v~~~~--~~~~~~~l~s~  165 (458)
                      |+++++|++.......  .....                     ....++.+  ..  +...+.++.  ++|++++|+++
T Consensus       132 dg~i~vwd~~~~~~~~--~~~~~---------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          132 DGQIIVLKVNHYQQES--EVKFL---------------------NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             TSEEEEEEEEEEEETT--EEEEE---------------------EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEEeccccCCc--eeecc---------------------ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            9999999986321110  00000                     00111121  12  677788888  67899999999


Q ss_pred             eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeee--
Q 012699          166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLK--  243 (458)
Q Consensus       166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~--  243 (458)
                      +.|++|++||+.+++.........|...|.+++|+ +++.+|++++.||.|++||+++++.+..+.... ...|.+++  
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~  266 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVC  266 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEEC
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEec
Confidence            99999999999988765433322267899999999 678999999999999999999999888775332 25799994  


Q ss_pred             --ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC------------------------CCCCcEE
Q 012699          244 --CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG------------------------EDPPAIT  297 (458)
Q Consensus       244 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~------------------------~~~~~i~  297 (458)
                        ++|++..+++++.+             |.|++||+++++....+...                        .|...|.
T Consensus       267 ~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~  333 (437)
T 3gre_A          267 QFYGKNSVIVVGGSSK-------------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS  333 (437)
T ss_dssp             TTTCTTEEEEEEESTT-------------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred             cccCCCccEEEEEcCC-------------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence              45567799998888             59999999998887776522                        1556789


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-------------------------------------CCCCeEE
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-------------------------------------HDSAISS  340 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------------------------------------~~~~v~~  340 (458)
                      +++|+ ++++|++|+.||.|++||+.+++....+.+                                     |...|++
T Consensus       334 ~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~  412 (437)
T 3gre_A          334 TISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS  412 (437)
T ss_dssp             CEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred             EEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence            99999 778999999999999999999887776665                                     8899999


Q ss_pred             EEEcCC--CCEEEEecCCCeEEEEe
Q 012699          341 ILFGPD--ETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       341 ~~~~~~--~~~l~~~~~dg~i~iwd  363 (458)
                      ++|+++  +.+|++++.||.|++|+
T Consensus       413 i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          413 ISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EeeeccCCceEEEEEcCCceEEEeC
Confidence            999998  77999999999999995

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.1e-37  Score=279.54  Aligned_cols=307  Identities=12%  Similarity=0.145  Sum_probs=239.1

Q ss_pred             eccCCCeeeeeeeeeeccCCCCeEEEEeCCC---CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC
Q 012699          128 GEEDFPEVKVDFLETFLGHTSPISCCRFSSS---GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD  204 (458)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  204 (458)
                      +...+...+.+.+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+...........|...|.+++|+ +++
T Consensus        20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~   98 (368)
T 3mmy_A           20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS-DDG   98 (368)
T ss_dssp             ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC-TTS
T ss_pred             EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC-cCC
Confidence            3444555555678889999999999999999   699999999999999999873333223445678899999999 688


Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeee--cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC--SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~  282 (458)
                      ++|++++.||.|++||+++++......   +...+.+++|  +|++..+++++.+             |.|++||+++++
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-------------g~i~vwd~~~~~  162 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQIAQ---HDAPVKTIHWIKAPNYSCVMTGSWD-------------KTLKFWDTRSSN  162 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEEEECSSCEEEEEEETT-------------SEEEEECSSCSS
T ss_pred             CEEEEEcCCCcEEEEEcCCCCceeecc---ccCceEEEEEEeCCCCCEEEEccCC-------------CcEEEEECCCCc
Confidence            899999999999999999998776433   3378999999  9999999999988             599999999999


Q ss_pred             eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee--eCCCCCeEEEEEcCCCCE----EEEecCC
Q 012699          283 AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW--PAHDSAISSILFGPDETS----IFSLGSD  356 (458)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~~~~~d  356 (458)
                      ....+...   ..+.++.+.+  ..+++++.++.+.+|+++........  ..+...+.++++.++...    +++++.|
T Consensus       163 ~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  237 (368)
T 3mmy_A          163 PMMVLQLP---ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE  237 (368)
T ss_dssp             CSEEEECS---SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred             EEEEEecC---CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence            88888643   3466666664  47888999999999999875443322  234456677777665544    9999999


Q ss_pred             CeEEEEeccCCCe--eEEeecCCc----ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCc
Q 012699          357 GKIIEWSLQNQGQ--VLWTRNCSR----FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA  430 (458)
Q Consensus       357 g~i~iwd~~~~~~--~~~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~  430 (458)
                      |.|++||++....  .........    ......+...+.+++|+|++++|++++.||.|++||+.+...+..+.+|...
T Consensus       238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  317 (368)
T 3mmy_A          238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP  317 (368)
T ss_dssp             SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC
T ss_pred             CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC
Confidence            9999999987532  111111111    0111122236999999999999999999999999999998887788899999


Q ss_pred             EEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          431 ITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       431 v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      |++++|+|++++|++++.|+..+.|+
T Consensus       318 v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          318 ISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             ceEEEECCCCCeEEEEeccccccccc
Confidence            99999999999999999987655443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-36  Score=279.13  Aligned_cols=251  Identities=18%  Similarity=0.286  Sum_probs=206.0

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC-C
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD-A  223 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~-~  223 (458)
                      .|...|++++|+|++++|++|+.||.|++||+.+++...  ....+...|.+++|+   +.++++++.||.|++||++ .
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~  206 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR--TMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIA  206 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--EecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccC
Confidence            388999999999999999999999999999998876543  334677899999996   4689999999999999999 4


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  303 (458)
                      +.....+..+.  ..+.+++|+|++..+++++.+             |.|++||+++++....+.  .|...|.+++|+|
T Consensus       207 ~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p  269 (401)
T 4aez_A          207 NHQIGTLQGHS--SEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKT--NHNAAVKAVAWCP  269 (401)
T ss_dssp             SCEEEEEECCS--SCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEEC--CCSSCCCEEEECT
T ss_pred             cceeeEEcCCC--CCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEec--CCcceEEEEEECC
Confidence            55556665544  789999999999999999988             599999999988877664  6778899999999


Q ss_pred             CC-CEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE--ecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          304 NG-KILAASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS--LGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       304 ~~-~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      ++ .++++++  .|+.|++||+++++.+..+. +...|.+++|+|+++++++  |+.||.|++||+.+.......     
T Consensus       270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~-----  343 (401)
T 4aez_A          270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV-----  343 (401)
T ss_dssp             TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE-----
T ss_pred             CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE-----
Confidence            76 4566654  79999999999999988876 6678999999999999998  558999999999875433211     


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~  425 (458)
                        ....+...|.+++|+|+|++|++++.||.|++|++.+++......
T Consensus       344 --~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          344 --DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             --EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             --EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence              123567789999999999999999999999999999886655443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-37  Score=280.99  Aligned_cols=263  Identities=16%  Similarity=0.242  Sum_probs=215.0

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      .+..+.+|...|++++| ++++++|++|+.|+.+++|+.....                                     
T Consensus         3 ~~~~~~~h~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------------   44 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVL-DYYGKRLATCSSDKTIKIFEVEGET-------------------------------------   44 (379)
T ss_dssp             --CCEEECCCCEEEEEE-CSSSSEEEEEETTSCEEEEEEETTE-------------------------------------
T ss_pred             ccEEecCCcccEEEEEE-cCCCCEEEEEECCCcEEEEecCCCc-------------------------------------
Confidence            56789999999999999 9999999999999999999875220                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC--CCEEEEEeCCCcEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS--GNNIASASVDGTVRI  173 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~i  173 (458)
                                                               .+.+..+.+|.++|++++|+|+  +++|++++.||.|++
T Consensus        45 -----------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A           45 -----------------------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -----------------------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             -----------------------------------------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence                                                     0144567789999999999987  999999999999999


Q ss_pred             EecCCCCCCCccccccCCCceEEEEEecCC-CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC------
Q 012699          174 WTYDSSTPASRNATIYCGTEIMSLEWECKS-DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP------  246 (458)
Q Consensus       174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~------  246 (458)
                      ||+.+++.........+...|.+++|+|.+ +.++++++.||.|++||+.++..........+...+.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            999887633333444577899999999432 8899999999999999999875443333334447899999999      


Q ss_pred             -------CCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccC---CCEEEEEecC
Q 012699          247 -------VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHN---GKILAASAVD  314 (458)
Q Consensus       247 -------~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d  314 (458)
                             ++..+++++.+             |.|++||++++...  ....+..|...|.+++|+|+   +++|++++.|
T Consensus       164 ~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             ------CTTCEEEEEETT-------------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             ccccCCCCCCEEEEEeCC-------------CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence                   68899999888             59999999876533  22345678889999999999   8999999999


Q ss_pred             CeEEEEeCCCCc-----eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          315 GMIHMFDMSAGL-----QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       315 g~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      |.|++||++++.     .+.....|...|.+++|+|++++|++++.||.|++|++......
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            999999998864     22233458899999999999999999999999999999865443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.2e-36  Score=280.42  Aligned_cols=277  Identities=15%  Similarity=0.306  Sum_probs=233.7

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      ....+|...|.+++|  ++++|++|+.||+|++||+.+++...  ....|...|.+++|   ++++|++|+.||.|++||
T Consensus       127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd  199 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY---DERVIITGSSDSTVRVWD  199 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEEC---CSSEEEEEETTSCEEEEE
T ss_pred             ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE--EEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEE
Confidence            344567888999887  78899999999999999998877543  33457788999998   477999999999999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-eecCCCCCcEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGEDPPAITSL  299 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~i~~~  299 (458)
                      +.+++....+..+.  ..+.++.+++  ..+++++.+             |.|++||+++++.... ....+|...|.++
T Consensus       200 ~~~~~~~~~~~~h~--~~v~~l~~~~--~~l~s~s~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          200 VNTGEMLNTLIHHC--EAVLHLRFNN--GMMVTCSKD-------------RSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             SSSCCEEEEECCCC--SCEEEEECCT--TEEEEEETT-------------SCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             CCCCcEEEEEcCCC--CcEEEEEEcC--CEEEEeeCC-------------CcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            99999988887655  6899999974  588888887             5999999998776532 2345788899999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      +|  ++++|++|+.||.|++||+++++.+..+.+|...|.+++|+  ++++++++.||.|++||++++......      
T Consensus       263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~------  332 (435)
T 1p22_A          263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL------  332 (435)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE------
Confidence            99  67899999999999999999999999999999999999994  679999999999999999986544322      


Q ss_pred             cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC---------cccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699          380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA---------SGMRTLPHGAAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                         ..+...+.+++|  ++++|++|+.||.|++||+.+..         ....+.+|...|++++|  ++++|++++.||
T Consensus       333 ---~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg  405 (435)
T 1p22_A          333 ---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  405 (435)
T ss_dssp             ---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             ---eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence               246677899888  88999999999999999997654         34455689999999999  678999999999


Q ss_pred             cEEEEeCC
Q 012699          451 SVQVMSLS  458 (458)
Q Consensus       451 ~v~iw~l~  458 (458)
                      .|++||+.
T Consensus       406 ~i~iwd~~  413 (435)
T 1p22_A          406 TILIWDFL  413 (435)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEECC
Confidence            99999973

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=283.94  Aligned_cols=305  Identities=12%  Similarity=0.186  Sum_probs=230.5

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      |...|++++| +++|++||+|+.|+.++||+...+......                                       
T Consensus        27 ~~~~V~~v~~-s~~g~~la~g~~dg~v~iw~~~~~~~~~~~---------------------------------------   66 (447)
T 3dw8_B           27 EADIISTVEF-NHSGELLATGDKGGRVVIFQQEQENKIQSH---------------------------------------   66 (447)
T ss_dssp             GGGSEEEEEE-CSSSSEEEEEETTSEEEEEEECC-----CC---------------------------------------
T ss_pred             ccCcEEEEEE-CCCCCEEEEEcCCCeEEEEEecCCCCCCcc---------------------------------------
Confidence            5788999999 999999999999999999998766211000                                       


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCC------------CCeEEEEeCCCC--CEEEEEeCC
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHT------------SPISCCRFSSSG--NNIASASVD  168 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~~~d  168 (458)
                                        .          .  ...+....+.+|.            +.|++++|+|++  .+|++++.|
T Consensus        67 ------------------~----------~--~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d  116 (447)
T 3dw8_B           67 ------------------S----------R--GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND  116 (447)
T ss_dssp             ------------------C----------C--CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECS
T ss_pred             ------------------c----------c--cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCC
Confidence                              0          0  0011445666787            889999999998  799999999


Q ss_pred             CcEEEEecCCCCCCC--------------------------------------ccccccCCCceEEEEEecCCCeEEEEE
Q 012699          169 GTVRIWTYDSSTPAS--------------------------------------RNATIYCGTEIMSLEWECKSDRLLLIG  210 (458)
Q Consensus       169 g~v~iwd~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~  210 (458)
                      ++|++||+.++....                                      ......|...|.+++|+ +++++|+++
T Consensus       117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~  195 (447)
T 3dw8_B          117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN-SDYETYLSA  195 (447)
T ss_dssp             SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC-TTSSEEEEE
T ss_pred             CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc-CCCCEEEEe
Confidence            999999987532210                                      00123467889999999 678899998


Q ss_pred             cCCCcEEEEEcCC-Cceeeec-----cCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          211 TADGGIKAWNVDA-KRVVCDL-----NTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       211 ~~dg~i~~wd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                       .|+.|++||+++ ++....+     ....+...|.+++|+|++ ..+++++.+             |.|++||+++++.
T Consensus       196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~  261 (447)
T 3dw8_B          196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASAL  261 (447)
T ss_dssp             -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSS
T ss_pred             -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCcc
Confidence             799999999994 4444322     122334689999999998 899999988             5999999998876


Q ss_pred             ----eEEeecCCCCC------------cEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCC---------
Q 012699          284 ----MTVLPLGEDPP------------AITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSA---------  337 (458)
Q Consensus       284 ----~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~---------  337 (458)
                          ...+.  .+..            .|.+++|+|++++|++++. +.|++||+++ ++++..+..|...         
T Consensus       262 ~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          262 CDRHSKLFE--EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SCTTCEEEC--CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             ccceeeEec--cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence                55554  4443            7999999999999999998 9999999997 8888899888642         


Q ss_pred             ------eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc-----------------------ccCCCCCCCc
Q 012699          338 ------ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-----------------------FCDPESSKSC  388 (458)
Q Consensus       338 ------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  388 (458)
                            +..++|+|++++|++++.||.|++||+.+.+..........                       ..........
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK  418 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred             ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCc
Confidence                  33499999999999999999999999998765432211000                       0001134557


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      +..++|+|++++||+++.++ +++|..+
T Consensus       419 i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          419 ILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             eeEEEECCCCCEEEEEecce-eeeeccc
Confidence            88999999999999998876 8888643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.5e-37  Score=276.29  Aligned_cols=249  Identities=17%  Similarity=0.184  Sum_probs=202.6

Q ss_pred             cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCC
Q 012699          187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGS  262 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~  262 (458)
                      ...|...|.+++|+ +++++|++|+.|++|++||+.+++.  +..+..|  ...|.+++|++  ++..+++++.|     
T Consensus         9 ~~~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH--~~~V~~v~~~~~~~~~~l~s~s~D-----   80 (316)
T 3bg1_A            9 DTSHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH--EGPVWQVAWAHPMYGNILASCSYD-----   80 (316)
T ss_dssp             -----CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC--SSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred             cccccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC--CccEEEEEeCCCCCCCEEEEEECC-----
Confidence            34578899999999 6788999999999999999988753  4455544  47899999986  48899999988     


Q ss_pred             cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCCce---eeeeeCCCCC
Q 012699          263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAGLQ---ITGWPAHDSA  337 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~  337 (458)
                              +.|++||+++++......+.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ...+.+|...
T Consensus        81 --------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           81 --------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             --------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             --------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence                    5999999998754444455678889999999997  78999999999999999987532   4556789999


Q ss_pred             eEEEEEcCC-----------------CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC--
Q 012699          338 ISSILFGPD-----------------ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG--  398 (458)
Q Consensus       338 v~~~~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--  398 (458)
                      |.+++|+|+                 +++|++++.|+.|++||++.......      ......|...|.+++|+|++  
T Consensus       153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~------~~~l~~h~~~V~~v~~sp~~~~  226 (316)
T 3bg1_A          153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE------EQKLEAHSDWVRDVAWAPSIGL  226 (316)
T ss_dssp             BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE------EECCBCCSSCEEEEECCCCSSC
T ss_pred             cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce------eeecccCCCceEEEEecCCCCC
Confidence            999999997                 46899999999999999975432111      11234678889999999987  


Q ss_pred             --CEEEEEeCCccEEEEEccCCC----cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          399 --RRLLVTSGSVRAPIYQVRGHA----SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       399 --~~l~~~~~~~~i~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                        ++|++++.|++|++|++....    ....+.+|...|.+++|+|++++||+++.||+|+||++
T Consensus       227 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          227 PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence              899999999999999997632    12233468899999999999999999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.5e-36  Score=272.24  Aligned_cols=285  Identities=15%  Similarity=0.148  Sum_probs=234.3

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      ....+|...|++++| ++++++|++++.|+.+++|+...+...                                     
T Consensus         5 ~~~~~h~~~v~~~~~-s~~~~~l~~~~~d~~v~iw~~~~~~~~-------------------------------------   46 (342)
T 1yfq_A            5 QIEQAPKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKN-------------------------------------   46 (342)
T ss_dssp             ECSSCCSSCEEEEEE-EGGGTEEEEEETTSEEEEEEEETTTTE-------------------------------------
T ss_pred             ecccCCCCcEEEEEE-cCCCCEEEEEcCCCeEEEEEeCCCCcc-------------------------------------
Confidence            345689999999999 999999999999999999987644100                                     


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEec
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTY  176 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~  176 (458)
                                                              .....+.+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus        47 ----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A           47 ----------------------------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             ----------------------------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ----------------------------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence                                                    01223447999999999999999 9999999999999999


Q ss_pred             -CCCCCCCcccccc--CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC---------CceeeeccCCCCCCceeeeee
Q 012699          177 -DSSTPASRNATIY--CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA---------KRVVCDLNTTDAFPSVLDLKC  244 (458)
Q Consensus       177 -~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~v~~~~~  244 (458)
                       .+++..   ....  +...|.+++|+|  +.++++++.|+.|++||+++         ++.+..+.   +...+.+++|
T Consensus        87 ~~~~~~~---~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~  158 (342)
T 1yfq_A           87 IGSPSFQ---ALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDT  158 (342)
T ss_dssp             SSSSSEE---ECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEE
T ss_pred             ccCCceE---eccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEe
Confidence             776542   3344  778999999995  88999999999999999987         66665555   3368999999


Q ss_pred             cCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeC
Q 012699          245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDM  322 (458)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~  322 (458)
                      +|++  +++++.+             |.|++||+++ +..........+...+.+++|+| +++++++++.||.|++|++
T Consensus       159 ~~~~--l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          159 NSSR--LIVGMNN-------------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             CSSE--EEEEEST-------------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             cCCc--EEEEeCC-------------CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence            9988  7777776             5999999998 65433333346777899999999 9999999999999999999


Q ss_pred             CCC------ceeeeeeCCCC---------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC-C
Q 012699          323 SAG------LQITGWPAHDS---------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS-K  386 (458)
Q Consensus       323 ~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~  386 (458)
                      +..      +....+..|..         .|.+++|+|++++|++++.||.|++||+.+.+....         ...+ .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------~~~~h~  294 (342)
T 1yfq_A          224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN---------FAKFNE  294 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE---------CCCCSS
T ss_pred             cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh---------hhcccC
Confidence            886      77888888865         999999999999999999999999999997654332         2244 7


Q ss_pred             CceeEEEEccCCCEEEEEeCCcc-EEEEE
Q 012699          387 SCRHEMALDVNGRRLLVTSGSVR-APIYQ  414 (458)
Q Consensus       387 ~~v~~~~~s~~g~~l~~~~~~~~-i~i~~  414 (458)
                      ..|.+++  |++++|++++.||. .+.+.
T Consensus       295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          295 DSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCceEec--CCCCeEEEEecCCccccccc
Confidence            7899999  99999999999997 44433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.8e-36  Score=271.71  Aligned_cols=291  Identities=15%  Similarity=0.213  Sum_probs=233.6

Q ss_pred             hhccccCCCcceeeeeeccCC---CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699           16 QLSRLKNNSETIKYANIGQTK---NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGN   92 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~---~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (458)
                      .++.+.+|...|+|++| +|+   |++|++|+.|+.+++|+.....            .                     
T Consensus        31 ~~~~~~~h~~~v~~~~~-~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------~---------------------   76 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSF-SPPTLPGNFLIAGSWANDVRCWEVQDSG------------Q---------------------   76 (368)
T ss_dssp             CEECSSCCSSCEEEEEE-CCTTSSSEEEEEEETTSEEEEEEECTTS------------C---------------------
T ss_pred             eeEeccCCCCceEEEEE-cCCCCCceEEEEECCCCcEEEEEcCCCC------------c---------------------
Confidence            45678899999999999 888   6999999999999999876420            0                     


Q ss_pred             CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699           93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVR  172 (458)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  172 (458)
                                                                   .....+.+|.+.|++++|+|++++|++++.||+|+
T Consensus        77 ---------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           77 ---------------------------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             ---------------------------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ---------------------------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence                                                         02245668999999999999999999999999999


Q ss_pred             EEecCCCCCCCccccccCCCceEEEEE--ecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699          173 IWTYDSSTPASRNATIYCGTEIMSLEW--ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       173 iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      +||+.+++...   ...+...|.+++|  + +++.+|++++.||.|++||+++++.+..+..+.   .+.++.+.+  ..
T Consensus       112 iwd~~~~~~~~---~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~--~~  182 (368)
T 3mmy_A          112 MWDLSSNQAIQ---IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIY--PM  182 (368)
T ss_dssp             EEETTTTEEEE---EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEET--TE
T ss_pred             EEEcCCCCcee---eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecC--Ce
Confidence            99998876542   4567889999999  5 678899999999999999999998887777653   455555554  46


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE----EEEEecCCeEEEEeCCCC-
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI----LAASAVDGMIHMFDMSAG-  325 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~v~d~~~~-  325 (458)
                      ++++..+             +.+.+|+++................+.++++.++...    +++++.||.|++||++.. 
T Consensus       183 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          183 AVVATAE-------------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             EEEEEGG-------------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             eEEEeCC-------------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence            6666666             5999999988665544433444556777777766554    999999999999999887 


Q ss_pred             --ceeeeeeCCCC------------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          326 --LQITGWPAHDS------------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       326 --~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                        ..+..+..|..            +|.+++|+|++++|++++.||.|++||+.+......         ...+...+.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~  320 (368)
T 3mmy_A          250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT---------SEQLDQPISA  320 (368)
T ss_dssp             HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE---------CCCCSSCEEE
T ss_pred             ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE---------ecCCCCCceE
Confidence              56777788776            799999999999999999999999999997654332         2256778999


Q ss_pred             EEEccCCCEEEEEeCCccEEEEEcc
Q 012699          392 MALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      ++|+|+|++|++++.|+..+.|++.
T Consensus       321 ~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          321 CCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEECCCCCeEEEEeccccccccccc
Confidence            9999999999999998755555443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.1e-35  Score=273.29  Aligned_cols=278  Identities=20%  Similarity=0.327  Sum_probs=234.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ....+.+|.+.|.. ++++++++|++|+.||+|++||+.+++...  ....|...|.+++|+   ++++++++.||.|++
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMR---DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE--EEcCCCCCEEEEEec---CCEEEEEeCCCeEEE
Confidence            45678899987633 244568899999999999999998887643  334577899999997   568999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      ||+.+++....+..+.  ..|.++.++  +..+++++.+             |.|++||+.+++....+.  .|...+.+
T Consensus       184 wd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~--~~~~~v~~  244 (445)
T 2ovr_B          184 WNAETGECIHTLYGHT--STVRCMHLH--EKRVVSGSRD-------------ATLRVWDIETGQCLHVLM--GHVAAVRC  244 (445)
T ss_dssp             EETTTTEEEEEECCCS--SCEEEEEEE--TTEEEEEETT-------------SEEEEEESSSCCEEEEEE--CCSSCEEE
T ss_pred             EECCcCcEEEEECCCC--CcEEEEEec--CCEEEEEeCC-------------CEEEEEECCCCcEEEEEc--CCcccEEE
Confidence            9999999988887655  679999885  5678888887             599999999998888775  67788999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +++  +++++++|+.||.|++||+++++.+..+.+|...|.+++|  ++.++++++.|+.|++||+++.+.....     
T Consensus       245 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----  315 (445)
T 2ovr_B          245 VQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-----  315 (445)
T ss_dssp             EEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred             EEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----
Confidence            999  6789999999999999999999999999999999999999  7889999999999999999987554322     


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC---CCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP---HGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                          ..+...+.++.+  ++++|++++.||.|++||+.+++....+.+   |...|++++|+  +++|++|+.||.|++|
T Consensus       316 ----~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          316 ----TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW  387 (445)
T ss_dssp             ----CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             ----cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence                234555666655  677999999999999999988876666654   88999999996  5799999999999999


Q ss_pred             eCC
Q 012699          456 SLS  458 (458)
Q Consensus       456 ~l~  458 (458)
                      |+.
T Consensus       388 d~~  390 (445)
T 2ovr_B          388 DLK  390 (445)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.8e-36  Score=277.97  Aligned_cols=285  Identities=13%  Similarity=0.201  Sum_probs=230.8

Q ss_pred             CeEEEEeCCCCCEE-EEEeCCCcEEEEecCCCCCC--CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-
Q 012699          149 PISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-  224 (458)
Q Consensus       149 ~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-  224 (458)
                      ....++++|+...+ ++++.||.|+||++......  .......|...|.+++|+|.++.+|++++.||.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34568889886544 45788999999998654221  112234577899999999548899999999999999999987 


Q ss_pred             ------ceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          225 ------RVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       225 ------~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                            +....+..+.  ..|.+++|+|++ ..+++++.+             |.|++||+++++....+....|...|.
T Consensus       116 ~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          116 LVLPLREPVITLEGHT--KRVGIVAWHPTAQNVLLSAGCD-------------NVILVWDVGTGAAVLTLGPDVHPDTIY  180 (402)
T ss_dssp             CSSCBCSCSEEEECCS--SCEEEEEECSSBTTEEEEEETT-------------SCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred             CccccCCceEEecCCC--CeEEEEEECcCCCCEEEEEcCC-------------CEEEEEECCCCCccEEEecCCCCCceE
Confidence                  4455555444  789999999998 688888888             599999999998888774357888999


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeee-eCCCCC-eEEEEEcCCCCEEEEe---cCCCeEEEEeccCCCeeEE
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW-PAHDSA-ISSILFGPDETSIFSL---GSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~  372 (458)
                      +++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++++|+++   +.|+.|++||+++......
T Consensus       181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~  260 (402)
T 2aq5_A          181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS  260 (402)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred             EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence            9999999999999999999999999999999888 788776 8999999999999999   7999999999998654222


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCc-ccccC--CCCCcEEEEEECCCCCeEEEecC
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHAS-GMRTL--PHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~-~~~~~--~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      ..       ...+...+..++|+|++++|++++ .|+.|++|++.+.+. ...+.  .|...|.+++|+|++.++++  .
T Consensus       261 ~~-------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~  331 (402)
T 2aq5_A          261 LQ-------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K  331 (402)
T ss_dssp             EE-------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred             EE-------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence            11       113456689999999999997554 699999999998764 22232  36699999999999998764  4


Q ss_pred             CCcEEEEeC
Q 012699          449 DHSVQVMSL  457 (458)
Q Consensus       449 dg~v~iw~l  457 (458)
                      |+.+++|++
T Consensus       332 ~~~~~~~~l  340 (402)
T 2aq5_A          332 CEIARFYKL  340 (402)
T ss_dssp             TEEEEEEEE
T ss_pred             ceeEEEEEc
Confidence            669999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.9e-35  Score=271.06  Aligned_cols=290  Identities=16%  Similarity=0.236  Sum_probs=219.9

Q ss_pred             eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699           84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIA  163 (458)
Q Consensus        84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  163 (458)
                      .+|++|. |++|++|++.....                                ..+..+.+|...|++++|+|+|++|+
T Consensus       117 n~lAvgl-d~tV~lWd~~tg~~--------------------------------~~~~~~~~~~~~V~sv~fspdg~~la  163 (420)
T 4gga_A          117 NVLAVAL-DNSVYLWSASSGDI--------------------------------LQLLQMEQPGEYISSVAWIKEGNYLA  163 (420)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCE--------------------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred             CEEEEEe-CCEEEEEECCCCCE--------------------------------EEEEEecCCCCcEEEEEECCCCCEEE
Confidence            3566664 88999999765320                                02224557889999999999999999


Q ss_pred             EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeee
Q 012699          164 SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDL  242 (458)
Q Consensus       164 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~  242 (458)
                      +|+.||+|++||+.+++...  ....|...+.+++|+   +.++++|+.|+.+++||..... .+..+..+.  ..+..+
T Consensus       164 sgs~Dg~v~iWd~~~~~~~~--~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~--~~~~~~  236 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRLR--NMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--QEVCGL  236 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCEEEE
T ss_pred             EEECCCeEEEEEcCCCcEEE--EEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccc--cceeee
Confidence            99999999999999887643  344567788888876   5789999999999999988654 344454444  689999


Q ss_pred             eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE--EeecCCCCCcEEEEEEccCC-CEEEE--EecCCeE
Q 012699          243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--VLPLGEDPPAITSLCFNHNG-KILAA--SAVDGMI  317 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i  317 (458)
                      .+.|++..+++++.|             |.+++|+..+++...  ......+...|.+++|+|.+ .++++  |+.|+.|
T Consensus       237 ~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I  303 (420)
T 4gga_A          237 RWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI  303 (420)
T ss_dssp             EECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred             eecCCCCeeeeeecc-------------ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence            999999999999988             599999998765321  22235677889999999965 45554  4579999


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      ++||+.++++...+..| ..+.++.|+|+++.+++++  .|+.|++||+.+...+...         .+|...|.+++|+
T Consensus       304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---------~gH~~~V~~l~~s  373 (420)
T 4gga_A          304 RIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---------KGHTSRVLSLTMS  373 (420)
T ss_dssp             EEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---------CCCSSCEEEEEEC
T ss_pred             EEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---------cCCCCCEEEEEEc
Confidence            99999999998888754 5688999999999888764  6999999999987654322         3578899999999


Q ss_pred             cCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699          396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW  436 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~  436 (458)
                      |+|++|++++.|++|++||+.......+...+...+....|
T Consensus       374 pdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          374 PDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             TTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred             CCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            99999999999999999999876555444445444444443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1e-35  Score=277.00  Aligned_cols=265  Identities=18%  Similarity=0.309  Sum_probs=199.3

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      ...+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++...  ....+...|.+++|+   +..+++++.||.|++|
T Consensus       166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vw  238 (435)
T 1p22_A          166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--TLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW  238 (435)
T ss_dssp             EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--EECCCCSCEEEEECC---TTEEEEEETTSCEEEE
T ss_pred             EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--EEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEE
Confidence            3456689999999999  78899999999999999999887643  334577889999996   3589999999999999


Q ss_pred             EcCCCcee---eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          220 NVDAKRVV---CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       220 d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      |+.++...   ..+..+  ...+.++.+  ++..+++++.+             |.|++||+++++....+.  .|...+
T Consensus       239 d~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~--~~~~~v  299 (435)
T 1p22_A          239 DMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSASGD-------------RTIKVWNTSTCEFVRTLN--GHKRGI  299 (435)
T ss_dssp             ECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEETT-------------SEEEEEETTTCCEEEEEE--CCSSCE
T ss_pred             eCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEeCC-------------CeEEEEECCcCcEEEEEc--CCCCcE
Confidence            99987755   333333  367888888  77899999888             599999999999888775  677889


Q ss_pred             EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      .+++++  ++++++|+.||.|++||+++++++..+.+|...|.+++|  ++.+|++++.||.|++||+.+..........
T Consensus       300 ~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  375 (435)
T 1p22_A          300 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT  375 (435)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred             EEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence            999984  679999999999999999999999999999999999999  6889999999999999999765321000000


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH  437 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~  437 (458)
                      ........|...|.+++|  ++++|++++.||.|++||+.+....... ....+..++.|.
T Consensus       376 ~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~  433 (435)
T 1p22_A          376 LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE-PPRSPSRTYTYI  433 (435)
T ss_dssp             TEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             hheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC-CCCCCccceeee
Confidence            011122357778999999  7889999999999999999876543322 223344555554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.5e-35  Score=265.31  Aligned_cols=262  Identities=16%  Similarity=0.215  Sum_probs=218.0

Q ss_pred             ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP   97 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~   97 (458)
                      +.+.+|...|++++| ++++++|++|+.|+++++|+...+..                                      
T Consensus         5 ~~~~gH~~~v~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------------   45 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTS--------------------------------------   45 (351)
T ss_dssp             CEECCCSSCEEEEEE-CSSSSEEEEEETTSEEEEEEECSSSC--------------------------------------
T ss_pred             ccCcccccceeEEEE-cCCCCEEEEeeCCCeEEEEECCCCCC--------------------------------------
Confidence            467899999999999 99999999999999999999764410                                      


Q ss_pred             cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEe
Q 012699           98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS--SGNNIASASVDGTVRIWT  175 (458)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd  175 (458)
                                                            ..+....+.+|..+|++++|+|  ++++|++++.||+|++||
T Consensus        46 --------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A           46 --------------------------------------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             --------------------------------------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             --------------------------------------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence                                                  0014456778999999999999  699999999999999999


Q ss_pred             cCCCCCCC-------ccccccCCCceEEEEEecCC--CeEEEEEcCCCcEEEEEcCCCceeeecc-----------CCCC
Q 012699          176 YDSSTPAS-------RNATIYCGTEIMSLEWECKS--DRLLLIGTADGGIKAWNVDAKRVVCDLN-----------TTDA  235 (458)
Q Consensus       176 ~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----------~~~~  235 (458)
                      +.++....       ......+...|.+++|+ ++  +.++++++.||.|++||+++++....+.           ...+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            98764321       22233567889999999 55  8899999999999999999877544332           1234


Q ss_pred             CCceeeeeecCC---CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC----CEE
Q 012699          236 FPSVLDLKCSPV---EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG----KIL  308 (458)
Q Consensus       236 ~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l  308 (458)
                      ...+.++.|+|+   +..+++++.+             +.+.+|+...++......+..|...|.+++|+|++    ++|
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALE-------------QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETT-------------EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCC-------------CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence            467899999997   8888888887             58888888887776666677888999999999998    899


Q ss_pred             EEEecCCeEEEEeCCCC----------------------------------------------ceeeeeeCCCCCeEEEE
Q 012699          309 AASAVDGMIHMFDMSAG----------------------------------------------LQITGWPAHDSAISSIL  342 (458)
Q Consensus       309 ~~~~~dg~i~v~d~~~~----------------------------------------------~~~~~~~~~~~~v~~~~  342 (458)
                      ++|+.||.|++||++++                                              +.+..+.+|...|++++
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  313 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS  313 (351)
T ss_dssp             EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence            99999999999999864                                              56777889999999999


Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      |+|++++|++++.||.|++||+.+.+..
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             EcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            9999999999999999999999976543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6e-35  Score=263.75  Aligned_cols=281  Identities=12%  Similarity=0.116  Sum_probs=211.0

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      .+..+.+|.+.|++++|+|||++|++|+.++ +++|++.+.+....    .....+..+++.+..+.++++++.|+.|++
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i   85 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS----QEMRHLSKVRMLHRTNYVAFVTGVKEVVHI   85 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE----EECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee----eecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence            4445678999999999999999999998775 78999876544321    122247778888555555577888999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~  297 (458)
                      ||..+++.+..+...   ..+.++.++++.  ++.+. +             +.|++||+.++ +.+..+..     ...
T Consensus        86 Wd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~~-~-------------~~i~i~d~~~~~~~~~~~~~-----~~~  141 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVD---APVKDLFLSREF--IVVSY-G-------------DVISVFKFGNPWKRITDDIR-----FGG  141 (355)
T ss_dssp             EETTTTEEEEEEECS---SCEEEEEECSSE--EEEEE-T-------------TEEEEEESSTTCCBSSCCEE-----EEE
T ss_pred             EECCCCcEEEEEECC---CceEEEEEcCCE--EEEEE-c-------------CEEEEEECCCCceeeEEecc-----CCc
Confidence            999999998877643   579999998865  33333 2             49999999987 66555542     345


Q ss_pred             EEEEccCCCEEEE--EecCCeEEEEeCCCCc---------------e-eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-
Q 012699          298 SLCFNHNGKILAA--SAVDGMIHMFDMSAGL---------------Q-ITGWPAHDSAISSILFGPDETSIFSLGSDGK-  358 (458)
Q Consensus       298 ~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  358 (458)
                      .+++++  .++++  |+.||.|++||+++++               + +..+.+|.++|.+++|+|++++|++++.|++ 
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            566777  56666  5789999999998765               2 7788999999999999999999999999998 


Q ss_pred             EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc--cc------------
Q 012699          359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM--RT------------  424 (458)
Q Consensus       359 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~--~~------------  424 (458)
                      |++||+++++.......       ..|...|.+++|+|+|++|++++.|+.|++||+.......  .+            
T Consensus       220 v~iwd~~~~~~~~~~~~-------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  292 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRR-------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE  292 (355)
T ss_dssp             EEEEETTTCCEEEEEEC-------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred             EEEEECCCCcEEEEEEc-------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence            99999998765543221       1266789999999999999999999999999997643111  00            


Q ss_pred             --------C-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          425 --------L-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       425 --------~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                              . .+......++|+|+++.|++++.||.+++|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                    0 11223467999999999999999999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-36  Score=296.18  Aligned_cols=261  Identities=13%  Similarity=0.239  Sum_probs=213.1

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC-CeEEEEEcCCCcEEE
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS-DRLLLIGTADGGIKA  218 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~  218 (458)
                      +..+.+|.++|++++|+|++++|++|+.||+|++||+.++..........|..+|.+++|+|+. +++|++++.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            3467899999999999999999999999999999999854433233445577899999998432 889999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      ||+.+++.........+...|.+++|+|+  +..+++++.+             |.|++||++++..........|...|
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------------g~I~vwdl~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------------SEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC-------------CcEEEEEeecCCCcceeEeecCCCce
Confidence            99999873333333334478999999999  9999999988             59999999988655555556788899


Q ss_pred             EEEEEcc-------------CCCEEEEEecCCeEEEEeCCCC----ceeeeeeCCCCCeEEEEEcCC---CCEEEEecCC
Q 012699          297 TSLCFNH-------------NGKILAASAVDGMIHMFDMSAG----LQITGWPAHDSAISSILFGPD---ETSIFSLGSD  356 (458)
Q Consensus       297 ~~~~~~~-------------~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d  356 (458)
                      .+++|+|             ++.+|++|+.||.|++||++++    .....+.+|..+|.+++|+|+   +++|++++.|
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence            9999999             5899999999999999999876    556778899999999999999   8999999999


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      |.|++||+.+......    ........+...+.+++|+|+|++|++++.||.|++|++..
T Consensus       229 g~I~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          229 RTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCEEEEEESSSSSCCB----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CEEEEecCCCCCCcce----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999987542211    12223345778899999999999999999999999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=272.11  Aligned_cols=264  Identities=8%  Similarity=0.058  Sum_probs=208.9

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .-...|.+++|+|||+++||++.|++|+  |....+.+     ..|...|.+++|+| ++       .++.+.+|+.   
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----~gh~~~v~~V~FsP-dg-------~~~~~~~~~~---   74 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----NCNSKNLFHVKEFP-LE-------FENKLDFELA---   74 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----SSBGGGTEEEEEEC-CC-------CCCTTTTSCC---
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee-----cCCCccEEEEEECC-CC-------CcceEEEEeC---
Confidence            4557899999999999999999999999  75444332     35778999999994 44       4555555543   


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-----cEEEE
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-----AITSL  299 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-----~i~~~  299 (458)
                      +....+.... ...|.+++|+|+|..+++++.+             |.+++||.+.  ....+  . |..     .+.++
T Consensus        75 ~~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~d-------------g~V~iwd~~~--~l~~l--~-~~~~~~~~sv~sv  135 (588)
T 2j04_A           75 QQNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNN-------------GNVSVFKDNK--MLTNL--D-SKGNLSSRTYHCF  135 (588)
T ss_dssp             CSSCSSTTSC-SCCEEEEEECSSSSCEEEEETT-------------SCEEEEETTE--EEEEC--C-CSSCSTTTCEEEE
T ss_pred             CCceEeecCC-CCcEEEEEECCCCCEEEEEeCC-------------CcEEEEeCCc--eeeec--c-CCCccccccEEEE
Confidence            3222232121 4789999999999999999998             5999999654  43433  3 333     59999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCce-------eeee----eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQ-------ITGW----PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      +|||+|++|++|+.||+|++||+.++..       +.++    .+|...|.+++|+|+|  +++++.|+++++||+.+..
T Consensus       136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            9999999999999999999999998753       5665    6778899999999999  8888899999999998764


Q ss_pred             ee--EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEE--CCCCCeEE
Q 012699          369 QV--LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW--HPTLPMFL  444 (458)
Q Consensus       369 ~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~  444 (458)
                      ..  ...     +  ...+...|.+++|+  |+.||+++ +++|++||+.+........+|.+.|.+++|  +|++..|+
T Consensus       214 ~~~~~~t-----L--~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La  283 (588)
T 2j04_A          214 HQPVSRM-----I--QNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL  283 (588)
T ss_dssp             SCCCEEE-----E--ECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred             cccceee-----e--cccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence            21  000     0  01456789999999  68999887 699999999988664445589999999999  99999999


Q ss_pred             EecCCCcEEEEeCC
Q 012699          445 TGSADHSVQVMSLS  458 (458)
Q Consensus       445 s~~~dg~v~iw~l~  458 (458)
                      ++++||+ ++|.++
T Consensus       284 ~a~edG~-klw~~d  296 (588)
T 2j04_A          284 MSNKTSY-KVLLED  296 (588)
T ss_dssp             ECSSCEE-EEEESS
T ss_pred             EEcCCCC-EEEeec
Confidence            9999999 999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.2e-36  Score=274.59  Aligned_cols=339  Identities=14%  Similarity=0.127  Sum_probs=213.6

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc----------------ccceeeeeccCCce--------
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA----------------TTATHMGSAEMGQT--------   74 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~----------------~~~~~~~~~~~~~~--------   74 (458)
                      .+..++..+..... ++++..|+.++.|+.+.+|+.......                .......|.+....        
T Consensus        13 pl~~~p~~~~w~~~-~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (393)
T 4gq1_A           13 PLNVRPYTTTWCSQ-SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD   91 (393)
T ss_dssp             CTTCCEEEEEECTT-SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred             cCCCCCeEEEEeCC-CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence            34455555665555 555555555556888999976533221                11223344433211        


Q ss_pred             -eeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE
Q 012699           75 -WASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC  153 (458)
Q Consensus        75 -~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  153 (458)
                       .....+.+..++++++.|+++++|++.....                             .....+..+.||.+.|+++
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~-----------------------------~~~~~~~~~~gH~~~v~~v  142 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI-----------------------------ITQHVLGGKSGHHNFVNDI  142 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEE-----------------------------EEEEEECTTTSCSSCEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCcc-----------------------------ceeeeecccCCCCCceEEE
Confidence             1233455778899999999999999765321                             1112455678999999999


Q ss_pred             EeCC--------CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          154 RFSS--------SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       154 ~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      +|+|        |+++||||+.|++|+|||+.++....  ....+..++.+++|+|.+..+|++++.||+|++||+.+++
T Consensus       143 ~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          143 DIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             EEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            9998        78999999999999999998765432  4556788999999997666799999999999999999887


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc-cC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HN  304 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~  304 (458)
                      ................+...+.                                  .........+|...+.++.|+ |+
T Consensus       221 ~~~~~~~~~~~~~~~~~s~~~~----------------------------------~~~~~~~~~~~~~~v~~v~~~~~d  266 (393)
T 4gq1_A          221 SAEENSQTELVKNPWLLTLNTL----------------------------------PLVNTCHSSGIASSLANVRWIGSD  266 (393)
T ss_dssp             ----------CSCCCSEEEESG----------------------------------GGC------CCSSSCSEEEEETTT
T ss_pred             ccccccccCCcccceEEecccc----------------------------------cceeeeecccccccceeeeeecCC
Confidence            6554433321111111111110                                  001111123566778889887 79


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES  384 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  384 (458)
                      ++.|++++.|+.+++||+..++....+..|...+..+.+.|+.+.+.....                             
T Consensus       267 g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  317 (393)
T 4gq1_A          267 GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-----------------------------  317 (393)
T ss_dssp             TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-----------------------------
T ss_pred             CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-----------------------------
Confidence            999999999999999999998888888888888888888887543321110                             


Q ss_pred             CCCceeEEEEcc--CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          385 SKSCRHEMALDV--NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       385 ~~~~v~~~~~s~--~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                          .....++|  ++.++++|+.|+.|++||+.++.......+|..+|++++|+|||++||+++.|| +.+|++
T Consensus       318 ----~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          318 ----LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ----SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ----ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                11122333  455677788899999999999887777788999999999999999999999776 555543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-35  Score=272.05  Aligned_cols=293  Identities=12%  Similarity=0.096  Sum_probs=226.0

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC---CCCccc--------------------------------------
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSST---PASRNA--------------------------------------  186 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~--------------------------------------  186 (458)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   ......                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999976665 57899999998877   211100                                      


Q ss_pred             --------------cccCCCceEEEEEecCCCeE-EEEEcCCCcEEEEEcC--CCceeeeccCCCCCCceeeeeecCCCC
Q 012699          187 --------------TIYCGTEIMSLEWECKSDRL-LLIGTADGGIKAWNVD--AKRVVCDLNTTDAFPSVLDLKCSPVEP  249 (458)
Q Consensus       187 --------------~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~  249 (458)
                                    ...+...|.+++|+ +++.+ +++++.||.|++||+.  +++....+..+.+...+.+++|+|++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                          00122369999999 56666 5899999999999999  888887776544457899999999999


Q ss_pred             eEEEeecccCCCCcceeeccceeEEEEECCCCceeE--EeecCCCCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCC
Q 012699          250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--VLPLGEDPPAITSLCFNHN---GKILAASAVDGMIHMFDMSA  324 (458)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~  324 (458)
                      .+++++.+             |.+++|++.+++...  ...+.+|...|.+++|+|+   +++|++|+.|+.|++||+++
T Consensus       163 ~l~~~~~~-------------g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          163 TVIIADKF-------------GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             EEEEEETT-------------SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             EEEEEeCC-------------CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            99999887             599999998876543  1123467788999999999   99999999999999999999


Q ss_pred             Cceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC---cc-------------cCCCCCCC
Q 012699          325 GLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS---RF-------------CDPESSKS  387 (458)
Q Consensus       325 ~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~-------------~~~~~~~~  387 (458)
                      ++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+.+++.........   .+             ........
T Consensus       230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (450)
T 2vdu_B          230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF  308 (450)
T ss_dssp             TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred             CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence            988877 56899999999999 99999999999999999999876544332110   00             00012345


Q ss_pred             ceeEEEEccCCCEEEEEe-CCccEEEEEc--cCC---CcccccCCCCCcEEEEEECCCCCeEEEecC------CCcEEEE
Q 012699          388 CRHEMALDVNGRRLLVTS-GSVRAPIYQV--RGH---ASGMRTLPHGAAITTVDWHPTLPMFLTGSA------DHSVQVM  455 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~-~~~~i~i~~~--~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iw  455 (458)
                      .+..++|+|++++|++++ .++.|++|++  ...   .....+..| ..|.+++|+|++.++++++.      +..|++|
T Consensus       309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence            789999999999999999 8999999999  443   233334456 88999999996544444443      5568888


Q ss_pred             eC
Q 012699          456 SL  457 (458)
Q Consensus       456 ~l  457 (458)
                      .+
T Consensus       388 ~~  389 (450)
T 2vdu_B          388 EY  389 (450)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-34  Score=268.04  Aligned_cols=250  Identities=14%  Similarity=0.211  Sum_probs=206.2

Q ss_pred             ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC----------CceeeeccCCCCCCceeeeeecCCCC-eEEEe
Q 012699          186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA----------KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSA  254 (458)
Q Consensus       186 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  254 (458)
                      ....|...|.+++|+|.++.+|++++.+|.|++||+.+          ......+..+.  ..+.+++|+|++. .++++
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--KEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--SCCCCEEECTTSTTEEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--CCeEEEEeCCCCCCeEEEE
Confidence            34567889999999965688999999999999999986          44555555444  6899999999998 88888


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCcee-----EEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCC---
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAM-----TVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAG---  325 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~---  325 (458)
                      +.+             |.|++||+..+...     ....+..|...|.+++|+| ++.+|++++.||.|++||++++   
T Consensus       201 ~~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~  267 (430)
T 2xyi_A          201 SDD-------------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS  267 (430)
T ss_dssp             CTT-------------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred             eCC-------------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence            887             59999999873321     1122347888899999999 6789999999999999999986   


Q ss_pred             ceeeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEE
Q 012699          326 LQITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLV  403 (458)
Q Consensus       326 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~  403 (458)
                      +.+..+..|...|++++|+|+++ +|++++.||.|++||+++.......        ...+...+.+++|+|+++ +|++
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~--------~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--------EECCSSCEEEEEECSSCTTEEEE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE--------eecCCCCEEEEEECCCCCCEEEE
Confidence            57778889999999999999887 6889999999999999975432221        224677899999999995 6889


Q ss_pred             EeCCccEEEEEccCC--------------CcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699          404 TSGSVRAPIYQVRGH--------------ASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       404 ~~~~~~i~i~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~  458 (458)
                      ++.|+.|++||+...              ..+....+|...|++++|+|+++ +|++++.||.|+||+++
T Consensus       340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            999999999999873              23334447999999999999999 89999999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-34  Score=265.55  Aligned_cols=285  Identities=16%  Similarity=0.174  Sum_probs=224.9

Q ss_pred             cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCC
Q 012699           82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGN  160 (458)
Q Consensus        82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~  160 (458)
                      ...++++++.+|.+++|++......                              ......+.+|.+.|++++|+| +++
T Consensus        46 ~~~~~~~~~~~g~i~v~~~~~~~~~------------------------------~~~~~~~~~h~~~V~~~~~~p~~~~   95 (402)
T 2aq5_A           46 FMALICEASGGGAFLVLPLGKTGRV------------------------------DKNVPLVCGHTAPVLDIAWCPHNDN   95 (402)
T ss_dssp             EEEEEBCCSSSCCEEEEETTCCEEC------------------------------CTTCCCBCCCSSCEEEEEECTTCTT
T ss_pred             eEEEEEEEcCCCEEEEEECccCCCC------------------------------CCCCceEecCCCCEEEEEeCCCCCC
Confidence            3456667899999999998542200                              002345679999999999999 999


Q ss_pred             EEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA  235 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  235 (458)
                      +|++|+.||+|++||+.++...     .......|...|.+++|+|.+..+|++++.||.|++||+++++....+....+
T Consensus        96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            9999999999999999887431     12234457789999999955457999999999999999999999888842334


Q ss_pred             CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-cEEEEEEccCCCEEEEE---
Q 012699          236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-AITSLCFNHNGKILAAS---  311 (458)
Q Consensus       236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~---  311 (458)
                      ...+.+++|+|++..+++++.+             |.|++||+++++....+. ..|.. .+.+++|+|++++|++|   
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred             CCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccC
Confidence            4789999999999999999988             599999999998887773 23444 48999999999999999   


Q ss_pred             ecCCeEEEEeCCCCce-eeeee-CCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699          312 AVDGMIHMFDMSAGLQ-ITGWP-AHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       312 ~~dg~i~v~d~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      +.|+.|++||+++++. +.... .|...+.+++|+|++++|+ +++.|+.|++||+.+.+.......      ...+...
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~------~~~~~~~  315 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS------MFSSKES  315 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE------EECCSSC
T ss_pred             CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec------ccccCCc
Confidence            7899999999998654 33333 5778899999999999986 556799999999998764221111      1124577


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      +.+++|+|++.++++  .++.+++|++.+.
T Consensus       316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          316 QRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             CSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             ccceEEeccccccee--cceeEEEEEcCCC
Confidence            999999999998864  5668999999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.9e-33  Score=259.79  Aligned_cols=286  Identities=14%  Similarity=0.103  Sum_probs=228.8

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc---ccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN---ATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      ..+..+ ..+.+++|+|++.++++++.|++|++||+.+++.....   ....+...+.+++|+ +++.++++++.|+.|+
T Consensus       117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVH  194 (433)
T ss_dssp             EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEE
T ss_pred             EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEE
Confidence            344444 34568999998778888888999999999887654311   123456789999997 7889999999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI  296 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i  296 (458)
                      +||+++++....+..+.  ..+.+++|+|++..+++++ .+             +.|++||+++++....+..   ...+
T Consensus       195 ~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~-------------~~i~~~d~~~~~~~~~~~~---~~~~  256 (433)
T 3bws_A          195 VFDLKTLAYKATVDLTG--KWSKILLYDPIRDLVYCSNWIS-------------EDISVIDRKTKLEIRKTDK---IGLP  256 (433)
T ss_dssp             EEETTTCCEEEEEECSS--SSEEEEEEETTTTEEEEEETTT-------------TEEEEEETTTTEEEEECCC---CSEE
T ss_pred             EEECCCceEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCC-------------CcEEEEECCCCcEEEEecC---CCCc
Confidence            99999998888776544  6799999999999886655 44             5999999999888776643   3458


Q ss_pred             EEEEEccCCCEEEEEe--------cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCC
Q 012699          297 TSLCFNHNGKILAASA--------VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       297 ~~~~~~~~~~~l~~~~--------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~  367 (458)
                      .+++|+|+++++++++        .||.|++||+++++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+.
T Consensus       257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            9999999999999888        4889999999988877665 456689999999999755 66688999999999875


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---------------CccEEEEEccCCCcccccCCCCCcEE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---------------SVRAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------------~~~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                      +.....          .+...+..++|+|+|++|++++.               ||.|++||+.+.+....+.. ...+.
T Consensus       336 ~~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~  404 (433)
T 3bws_A          336 KVQKSI----------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPT  404 (433)
T ss_dssp             EEEEEE----------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEE
T ss_pred             cEEEEe----------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCc
Confidence            443222          13455889999999999998887               46999999988765544443 56799


Q ss_pred             EEEECCCCCeEEEec-CCCcEEEEeCC
Q 012699          433 TVDWHPTLPMFLTGS-ADHSVQVMSLS  458 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~-~dg~v~iw~l~  458 (458)
                      +++|+|++++|++++ .|+.|++|+++
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            999999999988776 49999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=264.91  Aligned_cols=268  Identities=10%  Similarity=0.121  Sum_probs=208.0

Q ss_pred             EeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---------CC
Q 012699          154 RFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---------AK  224 (458)
Q Consensus       154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~  224 (458)
                      .+.+++.+|++|+.||+|++||+.+++......    ...|.++.|+|.    +++++.|++|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCc
Confidence            345678899999999999999999887653222    345677778743    9999999999999766         44


Q ss_pred             ceeeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      +.+..+.. .+...|.+++++|  ++.++++++.|             |.|++||+++++...... ..+...+.+++|+
T Consensus       115 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~~  179 (343)
T 3lrv_A          115 KVLREIEV-DSANEIIYMYGHNEVNTEYFIWADNR-------------GTIGFQSYEDDSQYIVHS-AKSDVEYSSGVLH  179 (343)
T ss_dssp             CEEEEEEC-CCSSCEEEEECCC---CCEEEEEETT-------------CCEEEEESSSSCEEEEEC-CCSSCCCCEEEEC
T ss_pred             ceeEEeec-CCCCCEEEEEcCCCCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEEe-cCCCCceEEEEEC
Confidence            43433332 2235799999999  99999999988             599999999988866553 3455579999999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCcee-eeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQI-TGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      |++.+|++|+.||.|++||+++++.+ ..+.. |.++|.+++|+|++.+|++++ |+.|++||+++......      +.
T Consensus       180 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------~~  252 (343)
T 3lrv_A          180 KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------YP  252 (343)
T ss_dssp             TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------SC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------ec
Confidence            99999999999999999999999887 77888 999999999999999999999 45999999997643321      11


Q ss_pred             CCCCCCCce--eEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECC---CCCeEEEecCCCcEEE
Q 012699          381 DPESSKSCR--HEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHP---TLPMFLTGSADHSVQV  454 (458)
Q Consensus       381 ~~~~~~~~v--~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~i  454 (458)
                      ....+...+  .+++|+|+|++|++++. ++.+++|++.........    .++..++|.|   +.+.|++++.||.+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAA  328 (343)
T ss_dssp             CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred             ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEE
Confidence            111122223  46999999999999998 999999999766443332    5677888988   8888999999998887


Q ss_pred             E
Q 012699          455 M  455 (458)
Q Consensus       455 w  455 (458)
                      +
T Consensus       329 ~  329 (343)
T 3lrv_A          329 I  329 (343)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-35  Score=270.91  Aligned_cols=250  Identities=11%  Similarity=0.050  Sum_probs=198.6

Q ss_pred             CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC--ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK--RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      +..+|.+++|+ +++++|++++.|+.|++||+.++  +....+..+  ...|.+++|+|+++++++++.|          
T Consensus        10 ~~~~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d----------   76 (377)
T 3dwl_C           10 LPKPSYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQD----------   76 (377)
T ss_dssp             CSSCCSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTTCCEEEEETT----------
T ss_pred             CCCcEEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCC----------
Confidence            45689999999 68889999999999999999988  555555554  4789999999999999999988          


Q ss_pred             ccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc---eeeeeeC-CCCCeEEEE
Q 012699          268 WGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL---QITGWPA-HDSAISSIL  342 (458)
Q Consensus       268 ~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~-~~~~v~~~~  342 (458)
                         |.|++||+.+++ ......+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++
T Consensus        77 ---~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           77 ---RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             ---SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             ---CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence               599999999877 33344456788899999999999999999999999999999876   4677777 999999999


Q ss_pred             EcCCCCEEEEecCCCeEEEEeccCCCeeEEee---------cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699          343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR---------NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY  413 (458)
Q Consensus       343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~  413 (458)
                      |+|++++|++++.|+.|++||+..........         ........ .+...+.+++|+|++++|++++.|+.|++|
T Consensus       154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw  232 (377)
T 3dwl_C          154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA  232 (377)
T ss_dssp             ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred             EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            99999999999999999999996432110000         00011111 677889999999999999999999999999


Q ss_pred             EccCCCc----ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          414 QVRGHAS----GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       414 ~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      |+.+...    ...+.+|...|.+++|+|++++|++++.|+.+ +|+.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          233 YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            9999877    66677899999999999999999999877666 6654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.9e-34  Score=252.51  Aligned_cols=282  Identities=13%  Similarity=0.184  Sum_probs=223.5

Q ss_pred             eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC
Q 012699           27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG  106 (458)
Q Consensus        27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~  106 (458)
                      .++++| |+++ +||+|. |++++|||.++++....+..  ..+......+.++++++++++|+.|+++++|++....  
T Consensus        28 ~~~l~W-S~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~--~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~--  100 (318)
T 4ggc_A           28 LNLVDW-SSGN-VLAVAL-DNSVYLWSASSGDILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--  100 (318)
T ss_dssp             CBCEEE-CTTS-EEEEEE-TTEEEEEETTTCCEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--
T ss_pred             ceEEEE-CCCC-EEEEEe-CCEEEEEECCCCCEEEEEEe--cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce--
Confidence            478999 8887 677665 99999999998865533221  1112234457788889999999999999999986533  


Q ss_pred             cccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc
Q 012699          107 AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA  186 (458)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  186 (458)
                                                      .++.+.+|...+.++.+  ++..+++++.++.+++|+....... ...
T Consensus       101 --------------------------------~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~-~~~  145 (318)
T 4ggc_A          101 --------------------------------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH-VAT  145 (318)
T ss_dssp             --------------------------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE-EEE
T ss_pred             --------------------------------eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCcee-EEE
Confidence                                            56677899999887666  4569999999999999998766543 223


Q ss_pred             cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec--cCCCCCCceeeeeecCCCCeEE---EeecccCCC
Q 012699          187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL--NTTDAFPSVLDLKCSPVEPIFV---SAAASRRYG  261 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~  261 (458)
                      ...+...+..+.|. +++.++++++.||.|++||+++++.....  ....+...+..+.+.|.+..++   +++.+    
T Consensus       146 ~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----  220 (318)
T 4ggc_A          146 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD----  220 (318)
T ss_dssp             EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT----
T ss_pred             EcCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC----
Confidence            44567889999998 77889999999999999999987643221  1223336789999999877544   23333    


Q ss_pred             CcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeE
Q 012699          262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA--VDGMIHMFDMSAGLQITGWPAHDSAIS  339 (458)
Q Consensus       262 ~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~  339 (458)
                               +.|++||.+.........   +...+..+.|+|+++.+++++  .|+.|++||+++++++..+.+|.+.|+
T Consensus       221 ---------~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~  288 (318)
T 4ggc_A          221 ---------RHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL  288 (318)
T ss_dssp             ---------CEEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             ---------CEEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence                     599999999888776654   445699999999999887765  799999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          340 SILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      +++|+|++++|++++.||+|++||+.+.
T Consensus       289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          289 SLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999999999999999999999999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.9e-33  Score=253.88  Aligned_cols=291  Identities=11%  Similarity=0.118  Sum_probs=208.9

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      .+..+..|...|+|++| ++||++|++|+.++ +++|+.+.....                                   
T Consensus        11 ~~~~~~~h~~~V~~v~f-s~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------------------   53 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEF-NQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------------------   53 (355)
T ss_dssp             --------CCCCCEEEE-CTTSSEEEEECSSE-EEEEEETTEEEE-----------------------------------
T ss_pred             CccccccCCCceEEEEE-CCCCCEEEEEcCCE-EEEEecCCccee-----------------------------------
Confidence            35567899999999999 99999999998775 679986543100                                   


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE-EEEeCCCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw  174 (458)
                                                                   ..  .+...+..+++.++++.+ ++++.|++|++|
T Consensus        54 ---------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           54 ---------------------------------------------MS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             ---------------------------------------------EE--EECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ---------------------------------------------ee--eecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence                                                         00  011136677888888777 567788999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNTTDAFPSVLDLKCSPVEPIFVS  253 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  253 (458)
                      |+.+++...   ...+..+|.++.|+ ++  .++++ .++.|++||+.++ +.+..+..     +...+++++  ..++.
T Consensus        87 d~~~~~~~~---~~~~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~~la~  152 (355)
T 3vu4_A           87 DDVKKQDVS---RIKVDAPVKDLFLS-RE--FIVVS-YGDVISVFKFGNPWKRITDDIR-----FGGVCEFSN--GLLVY  152 (355)
T ss_dssp             ETTTTEEEE---EEECSSCEEEEEEC-SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE-----EEEEEEEET--TEEEE
T ss_pred             ECCCCcEEE---EEECCCceEEEEEc-CC--EEEEE-EcCEEEEEECCCCceeeEEecc-----CCceEEEEc--cEEEE
Confidence            998887653   33466789999998 33  33433 4789999999988 66555443     233445555  55555


Q ss_pred             e--ecccCCCCcceeeccceeEEEEECCCCce----------------eEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699          254 A--AASRRYGSSNIYSWGFASLTVWNMKTWKA----------------MTVLPLGEDPPAITSLCFNHNGKILAASAVDG  315 (458)
Q Consensus       254 ~--~~~~~~~~~~~~~~~~g~i~i~d~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  315 (458)
                      +  +.+             |.|++||+++++.                ...  +.+|...|.+++|+|++++|++|+.||
T Consensus       153 ~sg~~~-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~--~~~h~~~v~~~~~s~~g~~l~s~s~d~  217 (355)
T 3vu4_A          153 SNEFNL-------------GQIHITKLQSSGSATTQDQGVQQKAILGKGVL--IKAHTNPIKMVRLNRKSDMVATCSQDG  217 (355)
T ss_dssp             EESSCT-------------TCEEEEECCC------------------CCEE--ECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             eCCCcC-------------cEEEEEECCCCCccccccccccccccCcccEE--EEccCCceEEEEECCCCCEEEEEeCCC
Confidence            3  444             6999999998651                333  457889999999999999999999999


Q ss_pred             e-EEEEeCCCCceeeeee-C-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC----c----------
Q 012699          316 M-IHMFDMSAGLQITGWP-A-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS----R----------  378 (458)
Q Consensus       316 ~-i~v~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~----------  378 (458)
                      + |++||+++++++..+. + |...|.+++|+|++++|++++.|++|++||++............    .          
T Consensus       218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence            8 9999999999999998 5 99999999999999999999999999999998653211110000    0          


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      .............++|+|++++|++++.||.+++|++....
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            00011122234679999999999999999999999987653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=257.37  Aligned_cols=252  Identities=11%  Similarity=0.106  Sum_probs=198.3

Q ss_pred             eeccCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEecC--CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          142 TFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYD--SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ...+|.+.|++++|+|++++| ++++.||+|++||+.  ++..........+...|.+++|+ +++.+|++++.+|.+++
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCEEEEEeCCCcEEE
Confidence            345788999999999999996 899999999999998  66554332223566889999999 68889999999999999


Q ss_pred             EEcCCCceee----eccCCCCCCceeeeeecCC---CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          219 WNVDAKRVVC----DLNTTDAFPSVLDLKCSPV---EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       219 wd~~~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      |++.+++...    .+..+  ...|.+++|+|+   +.++++++.+             +.|++||+++++....+ ..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~-~~~  239 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGH--VSMLTDVHLIKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKW-LFG  239 (450)
T ss_dssp             EETTSCCCSSCCCCCSEEC--SSCEEEEEEEECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEE-CCC
T ss_pred             EecCCcccccccceeeecc--cCceEEEEEcCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeee-ecC
Confidence            9998877543    34333  378999999999   8899999988             59999999998877764 346


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-------------------------CCCCeEEEEEcCC
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-------------------------HDSAISSILFGPD  346 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~  346 (458)
                      |...|.+++|+ ++++|++++.|+.|++||+++++.+..+..                         ....|.+++|+|+
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence            88899999999 999999999999999999999998887763                         2357899999999


Q ss_pred             CCEEEEec-CCCeEEEEec--cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC------CccEEEEEccC
Q 012699          347 ETSIFSLG-SDGKIIEWSL--QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG------SVRAPIYQVRG  417 (458)
Q Consensus       347 ~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~i~i~~~~~  417 (458)
                      +++|++++ .|+.|++|++  ...........      ...+ ..+.+++|+|++.++++++.      +..|.+|.+..
T Consensus       319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~------~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQI------ITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             SSEEEEEETTCSEEEEEEECSSSTTCEEEEEE------EECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCceeeccE------eccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999998 8999999999  44322211111      1122 66999999996544444443      44578887754


Q ss_pred             C
Q 012699          418 H  418 (458)
Q Consensus       418 ~  418 (458)
                      .
T Consensus       392 ~  392 (450)
T 2vdu_B          392 N  392 (450)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-31  Score=246.14  Aligned_cols=307  Identities=13%  Similarity=0.100  Sum_probs=232.2

Q ss_pred             ceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE
Q 012699           83 SRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI  162 (458)
Q Consensus        83 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  162 (458)
                      ..++++++.|+.+++|++....                                  .+..+.+|. .+.+++|+|++++|
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~----------------------------------~~~~~~~~~-~~~~~~~s~dg~~l   46 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNK----------------------------------VTATIPVGS-NPMGAVISPDGTKV   46 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTE----------------------------------EEEEEECSS-SEEEEEECTTSSEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCe----------------------------------EEEEeecCC-CcceEEECCCCCEE
Confidence            3567888999999999975532                                  444555564 48999999999987


Q ss_pred             -EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699          163 -ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD  241 (458)
Q Consensus       163 -~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~  241 (458)
                       ++++.|++|++||+.+++...   ....+..+.+++|+|.+..+++++..++.|++||+.+++....+..+   ..+.+
T Consensus        47 ~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~  120 (391)
T 1l0q_A           47 YVANAHSNDVSIIDTATNNVIA---TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLG  120 (391)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEE---EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEE
T ss_pred             EEECCCCCeEEEEECCCCeEEE---EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC---CCcce
Confidence             677799999999998876543   33445589999999544444466667899999999999988777654   46899


Q ss_pred             eeecCCCCeE-EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE-EEEecCCeEEE
Q 012699          242 LKCSPVEPIF-VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIHM  319 (458)
Q Consensus       242 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v  319 (458)
                      ++|+|+++.+ ++++.+             +.|++||+.+++....+...   ..+.+++|+|+++++ ++++.++.|++
T Consensus       121 ~~~s~dg~~l~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~  184 (391)
T 1l0q_A          121 LALSPDGKKLYVTNNGD-------------KTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISV  184 (391)
T ss_dssp             EEECTTSSEEEEEETTT-------------TEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCEEEEEeCCC-------------CEEEEEECCCCcEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence            9999999977 455545             59999999999888877632   457999999999887 56778899999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                      ||+++++.+..+. +...+.+++|+|++++|++++   .++.|++||+.+.+......          ....+..++|+|
T Consensus       185 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~  253 (391)
T 1l0q_A          185 IDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----------VGPDPAGIAVTP  253 (391)
T ss_dssp             EETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----------CCSSEEEEEECT
T ss_pred             EECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe----------cCCCccEEEEcc
Confidence            9999988877766 456789999999999999887   68999999998765433221          122478899999


Q ss_pred             CCCEEE-EEeCCccEEEEEccCCCcccccCCCCCcEE---EEEECC------------C--------C--CeEEEecCCC
Q 012699          397 NGRRLL-VTSGSVRAPIYQVRGHASGMRTLPHGAAIT---TVDWHP------------T--------L--PMFLTGSADH  450 (458)
Q Consensus       397 ~g~~l~-~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~---~~~~~~------------~--------~--~~l~s~~~dg  450 (458)
                      +|++|+ +++.++.|++||+.+++....+..|..+..   .+.+.|            +        .  ..+...+.|.
T Consensus       254 dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~  333 (391)
T 1l0q_A          254 DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDA  333 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCc
Confidence            999884 557799999999988765544443333211   122222            1        1  2466677788


Q ss_pred             cEEEEeC
Q 012699          451 SVQVMSL  457 (458)
Q Consensus       451 ~v~iw~l  457 (458)
                      .+++|++
T Consensus       334 ~~~~W~~  340 (391)
T 1l0q_A          334 TEWKWDF  340 (391)
T ss_dssp             SEEEEEC
T ss_pred             eEEEEEC
Confidence            9999997

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-33  Score=274.24  Aligned_cols=251  Identities=13%  Similarity=0.186  Sum_probs=210.3

Q ss_pred             cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC--CceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCC
Q 012699          187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA--KRVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGS  262 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~  262 (458)
                      ...|...|.+++|+ +++++|++|+.||.|++||+.+  ++....+..+  ...|.+++|+|+  +..+++++.|     
T Consensus         5 l~gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~s~D-----   76 (753)
T 3jro_A            5 ANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYD-----   76 (753)
T ss_dssp             ---CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEEETT-----
T ss_pred             cccCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEEeCC-----
Confidence            34678899999999 6788999999999999999984  4555555544  478999999988  8999999988     


Q ss_pred             cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCC--ceeeeeeCCCCCe
Q 012699          263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAG--LQITGWPAHDSAI  338 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v  338 (458)
                              |.|++||+.+++.........|...|.+++|+|+  ++++++|+.||.|++||++++  .....+.+|...|
T Consensus        77 --------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A           77 --------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             --------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred             --------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence                    5999999999875555555678899999999999  999999999999999999876  3455667899999


Q ss_pred             EEEEEcC-------------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC---CCEEE
Q 012699          339 SSILFGP-------------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN---GRRLL  402 (458)
Q Consensus       339 ~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~  402 (458)
                      .+++|+|             ++++|++++.||.|++||+++........     .....|...|.+++|+|+   +++|+
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~~~~h~~~V~~l~~sp~~~~~~~l~  223 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYLA  223 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee-----eeecCCCCcEEEEEeccCCCCCCEEE
Confidence            9999999             58999999999999999998764332111     112357788999999999   99999


Q ss_pred             EEeCCccEEEEEccCCC-----cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          403 VTSGSVRAPIYQVRGHA-----SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       403 ~~~~~~~i~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +++.||.|++||+.+..     ......+|...|++++|+|++++|++++.||.|++|+++
T Consensus       224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            99999999999998864     223334688999999999999999999999999999974

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3e-32  Score=252.93  Aligned_cols=261  Identities=18%  Similarity=0.281  Sum_probs=206.2

Q ss_pred             eeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCC--------CCCCccccccCCCceEEEEEecCCCeEEEEEc
Q 012699          141 ETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSS--------TPASRNATIYCGTEIMSLEWECKSDRLLLIGT  211 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  211 (458)
                      ....+|.+.|++++|+|+ +.+|++++.||.|++|++...        ..........|...+.+++|+|.+..+|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345579999999999997 679999999999999999762        12222334457788999999955555999999


Q ss_pred             CCCcEEEEEcCCCce-------eeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCC--
Q 012699          212 ADGGIKAWNVDAKRV-------VCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--  281 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--  281 (458)
                      .||.|++||+.++..       ...+.  .+...|.+++|+| ++..+++++.+             |.|++||++++  
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~d-------------g~i~i~d~~~~~~  266 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVADD-------------QKLMIWDTRNNNT  266 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEETT-------------SEEEEEETTCSCS
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeCC-------------CeEEEEECCCCCC
Confidence            999999999987432       12222  3447899999999 66788888877             59999999987  


Q ss_pred             -ceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCC-EEEEecCCC
Q 012699          282 -KAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDET-SIFSLGSDG  357 (458)
Q Consensus       282 -~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg  357 (458)
                       +....+.  .|...|++++|+|++. +|++|+.||.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.|+
T Consensus       267 ~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          267 SKPSHTVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             SSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence             3455543  6778899999999887 688999999999999998 567888999999999999999985 699999999


Q ss_pred             eEEEEeccCCCeeEEe-----ecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCC
Q 012699          358 KIIEWSLQNQGQVLWT-----RNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~  418 (458)
                      .|++||+.........     ...........+...|..++|+|+++ +|++++.|+.|++|++...
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9999999874321100     00011222345777899999999999 8999999999999999753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3e-31  Score=247.07  Aligned_cols=289  Identities=11%  Similarity=0.085  Sum_probs=223.1

Q ss_pred             eeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEe
Q 012699           76 ASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRF  155 (458)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  155 (458)
                      .+.+++++.++++++.++.+++|++.....     .                        .......+.+|.+.|.+++|
T Consensus       127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----~------------------------~~~~~~~~~~~~~~v~~~~~  177 (433)
T 3bws_A          127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----V------------------------RLSPPEKYKKKLGFVETISI  177 (433)
T ss_dssp             CCEESSSSEEEEEBTTSSSEEEEETTTCCE-----E------------------------EECCCHHHHTTCCEEEEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----e------------------------eecCcccccccCCceeEEEE
Confidence            355555678888888899999999754220     0                        00011245689999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC
Q 012699          156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA  235 (458)
Q Consensus       156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  235 (458)
                      +|+++++++++.|+.|++||+.+++...  ....+...+.+++|+|.+..++++++.++.|++||+++++....+...  
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--  253 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKA--TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--  253 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEE--EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEE--EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--
Confidence            9999999999999999999998876543  223466789999999544444566778999999999999888777654  


Q ss_pred             CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE-EEEecC
Q 012699          236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL-AASAVD  314 (458)
Q Consensus       236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d  314 (458)
                       ..+..++++|+++.+++++......     ...+|.|++||+.+++....+.   +...+.+++|+|+++.+ ++++.+
T Consensus       254 -~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~  324 (433)
T 3bws_A          254 -GLPRGLLLSKDGKELYIAQFSASNQ-----ESGGGRLGIYSMDKEKLIDTIG---PPGNKRHIVSGNTENKIYVSDMCC  324 (433)
T ss_dssp             -SEEEEEEECTTSSEEEEEEEESCTT-----CSCCEEEEEEETTTTEEEEEEE---EEECEEEEEECSSTTEEEEEETTT
T ss_pred             -CCceEEEEcCCCCEEEEEECCCCcc-----ccCCCeEEEEECCCCcEEeecc---CCCCcceEEECCCCCEEEEEecCC
Confidence             4689999999999988887532100     0123799999999988777663   23468899999999755 566889


Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---------------CCeEEEEeccCCCeeEEeecCCcc
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---------------DGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      +.|++||+.+++.+..+. +...+.+++|+|+++++++++.               ||.|++||+.+.+......     
T Consensus       325 ~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-----  398 (433)
T 3bws_A          325 SKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-----  398 (433)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-----
T ss_pred             CEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-----
Confidence            999999999988887776 6778999999999998888776               5799999998765433221     


Q ss_pred             cCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699          380 CDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG  417 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~  417 (458)
                           ....+..++|+|+|++|++++. ++.|++|++++
T Consensus       399 -----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          399 -----AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -----CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -----CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                 1345899999999999998875 99999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.5e-31  Score=243.12  Aligned_cols=266  Identities=12%  Similarity=0.099  Sum_probs=215.3

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCce
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSV  239 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v  239 (458)
                      .++++++.|++|++||+.+++...   ....+..+.+++|+|.+..++++++.|+.|++||+.+++....+..+.   .+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---EeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---Cc
Confidence            367889999999999998876543   334556789999994444445788899999999999999888776653   79


Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE-EEEecCCeEE
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIH  318 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~  318 (458)
                      .+++|+|+++.++.++.+.            +.|++||+.+++....+..   ...+.+++|+|++++| ++++.++.|+
T Consensus        77 ~~~~~spdg~~l~~~~~~~------------~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMAS------------STLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             EEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cceEECCCCCEEEEEECCC------------CEEEEEECCCCeEEEEEeC---CCCcceEEECCCCCEEEEEeCCCCEEE
Confidence            9999999999887665432            5999999999988877753   2468999999999977 6777899999


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC
Q 012699          319 MFDMSAGLQITGWPAHDSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN  397 (458)
Q Consensus       319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  397 (458)
                      +||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+++.......          .+...+..++|+|+
T Consensus       142 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~  210 (391)
T 1l0q_A          142 VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----------KVEAAPSGIAVNPE  210 (391)
T ss_dssp             EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSEEEEEEECTT
T ss_pred             EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----------ecCCCccceEECCC
Confidence            9999999988888765 456999999999887 57788999999999876443322          13446889999999


Q ss_pred             CCEEEEEe---CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeE-EEecCCCcEEEEeCC
Q 012699          398 GRRLLVTS---GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMF-LTGSADHSVQVMSLS  458 (458)
Q Consensus       398 g~~l~~~~---~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~l~  458 (458)
                      |++|++++   .++.|++||+.+.+....+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            99999988   68999999998876555554544 57899999999976 677899999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=244.56  Aligned_cols=271  Identities=10%  Similarity=0.083  Sum_probs=205.9

Q ss_pred             eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699           77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS  156 (458)
Q Consensus        77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  156 (458)
                      .....++.++++|+.|+++++|++....                                  .+..+.  ...|.++.|+
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~----------------------------------~~~~~~--~~~v~~~~~~   85 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSK----------------------------------TITTIT--TPNPRTGGEH   85 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSS----------------------------------CEEEEE--EECCCTTCCC
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCc----------------------------------EEEEEe--cCCceeeeeC
Confidence            3444578899999999999999986532                                  111121  3567778888


Q ss_pred             CCCCEEEEEeCCCcEEEEecCC---------CCCCCccccccCCCceEEEEEecC--CCeEEEEEcCCCcEEEEEcCCCc
Q 012699          157 SSGNNIASASVDGTVRIWTYDS---------STPASRNATIYCGTEIMSLEWECK--SDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      |+   +++++.|++|++|+...         .+.. ......+..+|.+++|+ +  +++++++++.||.|++||+++++
T Consensus        86 ~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~  160 (343)
T 3lrv_A           86 PA---IISRGPCNRLLLLYPGNQITILDSKTNKVL-REIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDS  160 (343)
T ss_dssp             CS---EEEECSTTEEEEEETTTEEEEEETTTCCEE-EEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSC
T ss_pred             Cc---eEEecCCCeEEEEEccCceEEeecCCccee-EEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCc
Confidence            87   99999999999997653         2211 11223345789999999 5  78899999999999999999998


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee-EEeecCCCCCcEEEEEEccC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM-TVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~  304 (458)
                      .......+. ...+.+++|+|++.++++++.+             |.|++||+++++.. ..+.. .|...|.+++|+|+
T Consensus       161 ~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~  225 (343)
T 3lrv_A          161 QYIVHSAKS-DVEYSSGVLHKDSLLLALYSPD-------------GILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADN  225 (343)
T ss_dssp             EEEEECCCS-SCCCCEEEECTTSCEEEEECTT-------------SCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTT
T ss_pred             EEEEEecCC-CCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCC
Confidence            866554332 2469999999999999999988             59999999998877 55542 37889999999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeeeeC---CCCCeE--EEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCc
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGWPA---HDSAIS--SILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +.+|++++ ++.|++||+++++.+..+..   |...+.  +++|+|++++|++++. |+.+++|++.+.......     
T Consensus       226 g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----  299 (343)
T 3lrv_A          226 GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----  299 (343)
T ss_dssp             SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----
T ss_pred             CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----
Confidence            99999999 55999999999877665543   434444  6999999999999988 999999999765432211     


Q ss_pred             ccCCCCCCCceeEEEEcc---CCCEEEEEeCCccEEEEEccC
Q 012699          379 FCDPESSKSCRHEMALDV---NGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~~~i~i~~~~~  417 (458)
                              ..+..++|+|   +++.+++++.++.+.++-...
T Consensus       300 --------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          300 --------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             --------EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             --------cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence                    3466788888   889999999999888876543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.1e-31  Score=230.98  Aligned_cols=254  Identities=15%  Similarity=0.074  Sum_probs=183.1

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC----CeEEEEEcCCC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS----DRLLLIGTADG  214 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg  214 (458)
                      .++++.+|..+|..+.+.||..-|++..-           +.        .+...|..++++ ++    ++.+++++.+ 
T Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~--------~~~~~v~sla~s-pd~~~~~~~l~s~g~~-  136 (356)
T 2w18_A           78 KLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------GN--------LEIREIRALFCS-SDDESEKQVLLKSGNI-  136 (356)
T ss_dssp             EEEEEECCSSCEEEECCCTTCCSCEEEEE-----------CS--------SSEEEEEEECC-------CCEEEEEEEEE-
T ss_pred             eeEEEeccCceeEEEEEcCcccceeeeee-----------cc--------ccccceEEEEEC-CCccccccEEEeCCCe-
Confidence            78889999999999999998654544321           11        123568899999 66    7888887754 


Q ss_pred             cEEEEEcCCCceeeec-cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC-CCCceeEEeecCCC
Q 012699          215 GIKAWNVDAKRVVCDL-NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM-KTWKAMTVLPLGED  292 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~-~~~~~~~~~~~~~~  292 (458)
                       +++|++.+++.+... ..+                       +             +.|++|++ .+++....+.  .|
T Consensus       137 -~~v~~l~~g~lv~ss~~g~-----------------------d-------------~~V~~~~~s~dG~~~~s~~--~~  177 (356)
T 2w18_A          137 -KAVLGLTKRRLVSSSGTLS-----------------------D-------------QQVEVMTFAEDGGGKENQF--LM  177 (356)
T ss_dssp             -EEEEEETTTEEEEEESSST-----------------------T-------------CEEEEEEECTTSCEEEEEE--EC
T ss_pred             -EEEEecCCCcEEEecccCC-----------------------C-------------CcEEEEEECCCCceeeeec--cC
Confidence             788877655544431 111                       2             37777777 3356555554  45


Q ss_pred             CCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC---CeEEEEEcCCCCEE------------EEec
Q 012699          293 PPAITSLCFNH---NGKILAASAVDGMIHMFDMSAGLQITGWPAHDS---AISSILFGPDETSI------------FSLG  354 (458)
Q Consensus       293 ~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l------------~~~~  354 (458)
                      ...+..++|+|   ++.+|++|+.|++|+|||++++++++++.+|..   .+.+++|+|+|.++            ++|+
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs  257 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS  257 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence            56678888888   779999999999999999999999999987543   67788999999876            5678


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE-E
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT-T  433 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~  433 (458)
                      .|++|++||..+++.......  .+  +.++...+.  ..+.++.++++++.|++|+|||+.+++....+.+|...+. .
T Consensus       258 ~D~tIklWd~~tgk~l~v~~~--~~--p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~  331 (356)
T 2w18_A          258 PVFQLIVINPKTTLSVGVMLY--CL--PPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF  331 (356)
T ss_dssp             CCEEEEEEETTTTEEEEEEEE--CC--CTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred             CCcEEEEEECCCCEEEEEEEe--ec--cCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence            899999999987654332110  00  223333333  3344488999999999999999999988888888887655 5


Q ss_pred             EEECCCCCeEEEecCCCcEEEEeCC
Q 012699          434 VDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       434 ~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|+|||++|++|+.|++|||||+.
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCcEEEecCC
Confidence            8999999999999999999999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.5e-31  Score=272.96  Aligned_cols=393  Identities=10%  Similarity=0.074  Sum_probs=276.6

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecC------cceEEeccccccccc------cc-------eeeeeccCCceee
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNE------ESLLLSTNSSEACAT------TA-------THMGSAEMGQTWA   76 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d------~~~~iw~~~~~~~~~------~~-------~~~~~~~~~~~~~   76 (458)
                      ..++|.+|...+.+++| ||||++||+++.+      ..+.+|+...+....      ..       ...+|+|+     
T Consensus        44 ~~~~lt~~~~~v~~~~~-SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD-----  117 (1045)
T 1k32_A           44 STRKIVSNLGVINNARF-FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD-----  117 (1045)
T ss_dssp             CEEEEECSSSEEEEEEE-CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT-----
T ss_pred             cEEEeeeCCCcccCeEE-CCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCC-----
Confidence            35678899999999999 9999999988654      478999988765331      11       33445555     


Q ss_pred             eeCCccceeEeeccCC----CcccccccccccCCcccce-eeeccCCCCcCCCcceeccCC------------Ceeee--
Q 012699           77 SSRPALSRFATNMSGN----DSISPSKLEFEDVGAGDII-QMFNDGLYTENGRDAQGEEDF------------PEVKV--  137 (458)
Q Consensus        77 ~~~~~~~~~l~~~~~~----~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~------------~~~~~--  137 (458)
                            ++++++++.+    +...+|.+........... .......|+| | .++++...            ....+  
T Consensus       118 ------g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~  189 (1045)
T 1k32_A          118 ------GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWI  189 (1045)
T ss_dssp             ------CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred             ------CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEE
Confidence                  4444444433    3334444332111111000 0112334777 6 55553211            11111  


Q ss_pred             ----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699          138 ----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       138 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                          .....+.+|...+.++.|+++ .++++++.|+++++|.+.......  ........+...+|+ ++++.++.+ .+
T Consensus       190 ~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~--~~l~~~~~~~~~~~S-pDG~~la~~-~~  264 (1045)
T 1k32_A          190 EVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL--RKHTSFTDYYPRHLN-TDGRRILFS-KG  264 (1045)
T ss_dssp             EEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC--EECCCCCSSCEEEEE-ESSSCEEEE-ET
T ss_pred             ECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc--eEecCCCCcceeeEc-CCCCEEEEE-eC
Confidence                123456899999999999998 667788889999999876422111  112223346677999 567767776 48


Q ss_pred             CcEEEEEcCCCceeeeccCCC---------CCCceeeeeec-CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          214 GGIKAWNVDAKRVVCDLNTTD---------AFPSVLDLKCS-PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      +.|.+||+...+.. .+....         +...+..++|+ |+++.++++..              +.+.+|++..++.
T Consensus       265 ~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~--------------~~i~~~~~~~~~~  329 (1045)
T 1k32_A          265 GSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR--------------GQAFIQDVSGTYV  329 (1045)
T ss_dssp             TEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET--------------TEEEEECTTSSBE
T ss_pred             CEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEc--------------CEEEEEcCCCCce
Confidence            89999999554433 443321         11358899999 99999988873              4999999988765


Q ss_pred             eEEeecCCCCC-cEEEEEEccCCCEEEEEecCCeEE-EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          284 MTVLPLGEDPP-AITSLCFNHNGKILAASAVDGMIH-MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       284 ~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      ..   +..+.. .+..++|+ +|+.|++++.++.+. +||+.+++... +..|...+..++|+|||++|++++.++.|++
T Consensus       330 ~~---~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          330 LK---VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             EE---CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EE---ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            44   334556 79999999 999999998888898 99998766543 4478889999999999999999999999999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC----------ccEEEEEccCCCcccccCCCCCcE
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS----------VRAPIYQVRGHASGMRTLPHGAAI  431 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~h~~~v  431 (458)
                      ||+.++.......         .+...+..++|||||++|++++.+          +.|++||+.+++ ...+..|...+
T Consensus       405 ~d~~tg~~~~~~~---------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~  474 (1045)
T 1k32_A          405 VDLETGKPTVIER---------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD  474 (1045)
T ss_dssp             EETTTCCEEEEEE---------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred             EECCCCceEEecc---------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence            9998765433211         245567889999999999988764          489999998875 56666888889


Q ss_pred             EEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          432 TTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .+++|+|||+.|++++.++..++|+.
T Consensus       475 ~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          475 YAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             EEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CCceEcCCCCEEEEEecccCCcCcch
Confidence            99999999999999998888777763

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.4e-30  Score=265.79  Aligned_cols=408  Identities=12%  Similarity=0.037  Sum_probs=287.9

Q ss_pred             hhccccCCCcce-------eeeeeccCCCceeeeeecC------cceEEecccccccc----ccceeeeeccCCceeeee
Q 012699           16 QLSRLKNNSETI-------KYANIGQTKNSTLASGVNE------ESLLLSTNSSEACA----TTATHMGSAEMGQTWASS   78 (458)
Q Consensus        16 ~~~~l~~h~~~i-------~~~~~~s~~~~~l~s~~~d------~~~~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~   78 (458)
                      ..++|..|...+       ..++| +|||+++++++.+      ..+.+|+...+...    .......|+| + .++..
T Consensus        91 ~~~~lt~~~~~~~~~~~~~~~~~~-SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~  167 (1045)
T 1k32_A           91 EIKRITYFSGKSTGRRMFTDVAGF-DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIG  167 (1045)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEE-CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEE
T ss_pred             CeEEcccCCCcccccccccccccC-CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEe
Confidence            357788999988       99999 9999988888755      34666776655432    2223344555 4 33321


Q ss_pred             -------------------------------------------CCccceeEeeccCCCcccccccccccCCcccc--eee
Q 012699           79 -------------------------------------------RPALSRFATNMSGNDSISPSKLEFEDVGAGDI--IQM  113 (458)
Q Consensus        79 -------------------------------------------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~  113 (458)
                                                                 ++++ .++++++.++...+|.+..........  ...
T Consensus       168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~  246 (1045)
T 1k32_A          168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD  246 (1045)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS
T ss_pred             ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC
Confidence                                                       1122 566677788999999876432111111  111


Q ss_pred             eccCCCCcCCCcceeccCCCeeee-----eeeeeecc-----------CCCCeEEEEeC-CCCCEEEEEeCCCcEEEEec
Q 012699          114 FNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLG-----------HTSPISCCRFS-SSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus       114 ~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~-----------h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~  176 (458)
                      .....|+|+|+.++.... ..+.+     ..+..+.+           |...+.+++|+ |||++|++++ ++.+.+|++
T Consensus       247 ~~~~~~SpDG~~la~~~~-~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          247 YYPRHLNTDGRRILFSKG-GSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             SCEEEEEESSSCEEEEET-TEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             cceeeEcCCCCEEEEEeC-CEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence            234478999998887643 33322     11223333           44579999999 9999999887 789999998


Q ss_pred             CCCCCCCccccccCCC-ceEEEEEecCCCeEEEEEcCCCcEE-EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          177 DSSTPASRNATIYCGT-EIMSLEWECKSDRLLLIGTADGGIK-AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      .++....   ...+.. .+..++|+  +++.+++++.++.+. +||+.+++.... .  .+...+..++|+|+++.++++
T Consensus       325 ~~~~~~~---~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~--~~~~~~~~~~~SpDG~~la~~  396 (1045)
T 1k32_A          325 SGTYVLK---VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKF-E--ENLGNVFAMGVDRNGKFAVVA  396 (1045)
T ss_dssp             TSSBEEE---CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEEC-C--CCCCSEEEEEECTTSSEEEEE
T ss_pred             CCCceEE---ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEe-c--CCccceeeeEECCCCCEEEEE
Confidence            7765321   233445 78899998  677788888788888 999988765433 3  233678999999999999988


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC----------eEEEEeCCC
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG----------MIHMFDMSA  324 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~v~d~~~  324 (458)
                      +.+             +.|++||+.+++......  .+...+.+++|+|||++|++++.++          .|++||+.+
T Consensus       397 ~~~-------------~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          397 NDR-------------FEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             ETT-------------SEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             CCC-------------CeEEEEECCCCceEEecc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            877             499999999988776654  4666789999999999999887654          899999998


Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee------EEee--c---------------------
Q 012699          325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV------LWTR--N---------------------  375 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~--~---------------------  375 (458)
                      ++ ...+..|...+..++|+|+|++|++++.++...+|+.......      ....  .                     
T Consensus       462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (1045)
T 1k32_A          462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  540 (1045)
T ss_dssp             TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence            77 6677788888999999999999999999888888876533210      0000  0                     


Q ss_pred             -C----CcccCCCCCCCceeEEEEccCCCEEEE-------------EeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699          376 -C----SRFCDPESSKSCRHEMALDVNGRRLLV-------------TSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH  437 (458)
Q Consensus       376 -~----~~~~~~~~~~~~v~~~~~s~~g~~l~~-------------~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~  437 (458)
                       .    ........+...+..++++|||+++++             ......+++||+.+++.. .+.   ..+.+++|+
T Consensus       541 d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~S  616 (1045)
T 1k32_A          541 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRLS  616 (1045)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEEC
T ss_pred             cccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEEC
Confidence             0    001111224466889999999988875             122457888898876532 222   678899999


Q ss_pred             CCCCeEEEecCCCcEEEEeCC
Q 012699          438 PTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       438 ~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      |||+.|++++.| .|++||+.
T Consensus       617 ~DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          617 ADRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             TTSCEEEEEETT-SCEEEEES
T ss_pred             CCCCEEEEEcCC-cEEEEeCc
Confidence            999999998877 89999973

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=1.5e-29  Score=239.78  Aligned_cols=316  Identities=14%  Similarity=0.132  Sum_probs=235.9

Q ss_pred             CCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeCC
Q 012699           79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFSS  157 (458)
Q Consensus        79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~  157 (458)
                      ++.++.++++++.++++.+||.....                                  .+.++. +|.  +.+++|+|
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~----------------------------------~~~~i~~g~~--~~~v~~sp  188 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKK----------------------------------IVKVIDTGYA--VHISRMSA  188 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCC----------------------------------EEEEEECSTT--EEEEEECT
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCce----------------------------------EEEEEecCcc--cceEEECC
Confidence            45567778888888888888764422                                  444555 343  88999999


Q ss_pred             CCCEEEEEeCCCcEEEEec--CCCCCCCccccccCCCceEEEEEecC----CCeEEEEEc-CCCcEEEEEcCCCceeeec
Q 012699          158 SGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLEWECK----SDRLLLIGT-ADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~-~dg~i~~wd~~~~~~~~~~  230 (458)
                      ||++|++++.|++|++||+  .+++..   .....+..+..++|+ +    +++++++++ .+++|.+||..+++++..+
T Consensus       189 dg~~l~v~~~d~~V~v~D~~~~t~~~~---~~i~~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i  264 (543)
T 1nir_A          189 SGRYLLVIGRDARIDMIDLWAKEPTKV---AEIKIGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV  264 (543)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCEEE---EEEECCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEECCCCeEEEEECcCCCCcEE---EEEecCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence            9999999999999999999  555443   234456778999999 5    777787777 4899999999999988877


Q ss_pred             cCCC---------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          231 NTTD---------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       231 ~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      ....         ....+..+.++|++..++....+.            +.|.+||..+.+........ +...+..++|
T Consensus       265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~------------g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~  331 (543)
T 1nir_A          265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET------------GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGW  331 (543)
T ss_dssp             ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEECTTSSSCEEEEEE-CCSSCCCEEE
T ss_pred             cccCcccCccccccCCceEEEEECCCCCEEEEEECCC------------CeEEEEEecCCCcceeEEec-cCcCccCceE
Confidence            6531         123688999999888766655443            69999999887655422221 3345778999


Q ss_pred             ccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeC----CCCCeEEEEEcCC-CCEEEEec-CCCeEEEEeccC-------C
Q 012699          302 NHNGKILAASA-VDGMIHMFDMSAGLQITGWPA----HDSAISSILFGPD-ETSIFSLG-SDGKIIEWSLQN-------Q  367 (458)
Q Consensus       302 ~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~  367 (458)
                      +|+|++|++++ .+++|.+||+.+++++..+..    |.+....+ ++|+ +..++++. .|++|.+||+.+       .
T Consensus       332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~  410 (543)
T 1nir_A          332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW  410 (543)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence            99999877655 588999999999998888774    55444443 4676 66667765 589999999987       2


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-------CCccEEEEEccCCCccccc---------CCCCCcE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-------GSVRAPIYQVRGHASGMRT---------LPHGAAI  431 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~~i~i~~~~~~~~~~~~---------~~h~~~v  431 (458)
                      +.+..         ...+...+..++++|+|++|++++       .+++|.+||+.+.+.....         ..+...+
T Consensus       411 ~~v~~---------l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~  481 (543)
T 1nir_A          411 KKVAE---------LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV  481 (543)
T ss_dssp             SEEEE---------EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEE
T ss_pred             eEEEE---------EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCce
Confidence            22211         123445677899999999999987       2679999999988766333         2467889


Q ss_pred             EEEEECCCCCeEEEe-----cCCCcEEEEeC
Q 012699          432 TTVDWHPTLPMFLTG-----SADHSVQVMSL  457 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~-----~~dg~v~iw~l  457 (458)
                      ..+.|+|+|+.|+++     +.|+.|.|||.
T Consensus       482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             EEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             EeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence            999999999977755     34799999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=100.00  E-value=4.2e-30  Score=243.64  Aligned_cols=342  Identities=10%  Similarity=0.067  Sum_probs=253.4

Q ss_pred             eeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcc
Q 012699           29 YANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAG  108 (458)
Q Consensus        29 ~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~  108 (458)
                      +.+| ++++.++++++.|+++.+||..+++....+..-     .....+.++++++++++++.++++.+|++....    
T Consensus       142 ~~~~-~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t----  211 (543)
T 1nir_A          142 LNDL-DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE----  211 (543)
T ss_dssp             CSCC-CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEETTSEEEEEETTSSS----
T ss_pred             cccc-CCCCEEEEEEcCCCeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECCCCeEEEEECcCCC----
Confidence            3358 899999999999999999999988766444310     012346778889999999999999999983100    


Q ss_pred             cceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC----CCCEEEEEeC-CCcEEEEecCCCCCCC
Q 012699          109 DIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS----SGNNIASASV-DGTVRIWTYDSSTPAS  183 (458)
Q Consensus       109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~-dg~v~iwd~~~~~~~~  183 (458)
                                    +              +.+.++. +...+..++|+|    ||++|++++. +++|.+||..+.+.+.
T Consensus       212 --------------~--------------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~  262 (543)
T 1nir_A          212 --------------P--------------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ  262 (543)
T ss_dssp             --------------C--------------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred             --------------C--------------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce
Confidence                          0              0333444 344578999999    9999998874 8999999998877654


Q ss_pred             cccccc---------CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCCCCCCceeeeeecCCCCeEE
Q 012699          184 RNATIY---------CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       184 ~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      ......         ....+..+.++|.+..++++...++.|.+||..+.+.+.  .+..   ...+.++.|+|++++++
T Consensus       263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEE
T ss_pred             eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEE
Confidence            322211         123688999997778888899999999999998866443  3322   24578899999999877


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC--CCCcEEEEEEccC-CCEEEEEe-cCCeEEEEeCCC----
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE--DPPAITSLCFNHN-GKILAASA-VDGMIHMFDMSA----  324 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~-~dg~i~v~d~~~----  324 (458)
                      ++....            +.|.+||+.+++....+....  |......+ ++|+ +.+++++. .|++|.+||+.+    
T Consensus       340 va~~~~------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~  406 (543)
T 1nir_A          340 TAANNS------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP  406 (543)
T ss_dssp             EEEGGG------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred             EEecCC------------CeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence            665433            499999999999888876432  44333333 4777 55666665 579999999988    


Q ss_pred             ---CceeeeeeCCCCCeEEEEEcCCCCEEEEec-------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          325 ---GLQITGWPAHDSAISSILFGPDETSIFSLG-------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       325 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                         .+.++++..|...+..++++|++++|++++       .+++|.+||+.+.+................+...+..++|
T Consensus       407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  486 (543)
T 1nir_A          407 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY  486 (543)
T ss_dssp             TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred             hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence               889999999998899999999999999987       2779999999987654222111111112234677999999


Q ss_pred             ccCCCEEEEEe-----CCccEEEEEccCCCcccccC
Q 012699          395 DVNGRRLLVTS-----GSVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       395 s~~g~~l~~~~-----~~~~i~i~~~~~~~~~~~~~  425 (458)
                      +|+|+.|+++.     .++.|.|||..+.+....+.
T Consensus       487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          487 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             CSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            99999999774     36999999999987654444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.4e-30  Score=235.27  Aligned_cols=263  Identities=12%  Similarity=0.117  Sum_probs=173.4

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEecccccccc------------ccceeeeeccCCceeeeeCCccceeEeecc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------------TTATHMGSAEMGQTWASSRPALSRFATNMS   90 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (458)
                      |...+....+ ++++.+|++|+.|++++||+.+.+...            +.+..++|+|.   .......++++|++++
T Consensus        88 ~~~~~~~~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~---~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           88 HDGDGNVNSS-PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADV---YSADNRLAEQVIASVG  163 (393)
T ss_dssp             ---------C-CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEE---ECTTCSEEEEEEEEEE
T ss_pred             cCCCcceeec-CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccc---cccccCCCCCEEEEEE
Confidence            4444455555 788899999999999999998876432            12333444432   0011223789999999


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCC
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN-NIASASVDG  169 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg  169 (458)
                      .|+++++||+....                                  .+..+.+|.++|.+++|+|++. +|++++.|+
T Consensus       164 ~D~tv~~Wd~~~~~----------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          164 DDCTLIIWRLTDEG----------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             TTSEEEEEEEETTE----------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCeEEEEECCCCc----------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence            99999999986533                                  4445668999999999999874 799999999


Q ss_pred             cEEEEecCCCCCCCcc-----------------------ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          170 TVRIWTYDSSTPASRN-----------------------ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      +|++||+.+++.....                       ....+...+.++.|.++++..+++++.|+++++||+.+++.
T Consensus       210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~  289 (393)
T 4gq1_A          210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND  289 (393)
T ss_dssp             EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred             EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence            9999999876542211                       11234567889999888999999999999999999998876


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc--C
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--N  304 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~  304 (458)
                      ...+..+.  ..+..+.+.|+.....                                      .+...+. ..++|  +
T Consensus       290 ~~~l~~~~--~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~-~~~~~~~~  328 (393)
T 4gq1_A          290 YNEISDST--MKLGPKNLLPNVQGIS--------------------------------------LFPSLLG-ACPHPRYM  328 (393)
T ss_dssp             ----------------CCSCSEEEEC--------------------------------------SSCCSSC-CEECSSCT
T ss_pred             CceEeeec--CccccEEEcccccccc--------------------------------------ccCccee-EEEccCCC
Confidence            65554433  3344444444322111                                      1111122 23333  4


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      +.++++|+.||.|++||+.+++....+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            44667788899999999999999888889999999999999999999998765 6677665

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.8e-28  Score=208.37  Aligned_cols=228  Identities=15%  Similarity=0.144  Sum_probs=161.9

Q ss_pred             eccCCCCcC----CCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe--CCCcEEEEecCC-CCCCCccc
Q 012699          114 FNDGLYTEN----GRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS--VDGTVRIWTYDS-STPASRNA  186 (458)
Q Consensus       114 ~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~-~~~~~~~~  186 (458)
                      ....+|+|+    +..++.+               +|...|..+   ++++++.+++  .|++|++|++.. ++...  .
T Consensus       114 v~sla~spd~~~~~~~l~s~---------------g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~--s  173 (356)
T 2w18_A          114 IRALFCSSDDESEKQVLLKS---------------GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE--N  173 (356)
T ss_dssp             EEEECC------CCEEEEEE---------------EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE--E
T ss_pred             eEEEEECCCccccccEEEeC---------------CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee--e
Confidence            455667888    6555542               344445444   5776666644  599999999944 44322  3


Q ss_pred             cccCCCceEEEEEec--CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCc
Q 012699          187 TIYCGTEIMSLEWEC--KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSS  263 (458)
Q Consensus       187 ~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      ...+...+..++|+|  .++.+|++++.|++|++||+++++++.++..+. +...+.+++|+|++..+++++.+.. ...
T Consensus       174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w~  252 (356)
T 2w18_A          174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KES  252 (356)
T ss_dssp             EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred             eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cce
Confidence            345667777777774  367899999999999999999999999987543 2346778899999998877664321 122


Q ss_pred             ceeeccceeEEEEECCCCceeEEeec---CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeE-
Q 012699          264 NIYSWGFASLTVWNMKTWKAMTVLPL---GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAIS-  339 (458)
Q Consensus       264 ~~~~~~~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-  339 (458)
                      .+.+..+++|++||..+++.+..+..   .+|...+.+..++  +.++++|+.|++|+|||+.+++++.++.+|...+. 
T Consensus       253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred             eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence            34455668999999999988766532   3555455444444  78999999999999999999999999999987655 


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEec
Q 012699          340 SILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       340 ~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      +++|+|||++|++|+.|++|++||+
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            5899999999999999999999996

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=1.2e-27  Score=237.99  Aligned_cols=294  Identities=9%  Similarity=0.039  Sum_probs=206.5

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC---CCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSS---TPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      ..|.+++|+|||++|++++. +.|++||+.++   ...   ....+...+..++|+ +++++|++++ ++.|++||+.++
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~S-PDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLS-PKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEEC-TTSSEEEEEE-TTEEEEEETTTT
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCC-CCCCEEEEEe-CCcEEEEecCCC
Confidence            45788999999999999886 99999999887   332   233455779999999 6788888876 468999999988


Q ss_pred             ceeeeccCCCCC--------------CceeeeeecCCCCeEEEeecccCCCCcc------------------eee--ccc
Q 012699          225 RVVCDLNTTDAF--------------PSVLDLKCSPVEPIFVSAAASRRYGSSN------------------IYS--WGF  270 (458)
Q Consensus       225 ~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~--~~~  270 (458)
                      +...........              ..+..+.|+|+++.+++++.+.......                  ..+  ...
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            766544332210              1147899999999999887653211000                  000  011


Q ss_pred             eeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEec-----CCeEEEEeCCCCceeeeeeCCCC----CeEE
Q 012699          271 ASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-----DGMIHMFDMSAGLQITGWPAHDS----AISS  340 (458)
Q Consensus       271 g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~----~v~~  340 (458)
                      ..|.+||+.+ ++.........+...+..++| |||++|++++.     +..|++||+.+++....+..+..    .+..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence            2788899988 776554322246677999999 99999987764     56899999999887776665543    4568


Q ss_pred             EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE-EEccCCCEEEEEeC-Cc--cEEEEEcc
Q 012699          341 ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM-ALDVNGRRLLVTSG-SV--RAPIYQVR  416 (458)
Q Consensus       341 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~-~~--~i~i~~~~  416 (458)
                      ++|+|||+++++++.||.+++|.+....... .        ...+...+..+ .|+|+|+.|++.+. ++  .++||++.
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~-~--------l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRIDSKGKAA-A--------LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEECSSSCEE-E--------SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             eEECCCCeEEEEecCCCccEEEEEcCCCCee-e--------eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            9999999999999999988888776332211 1        11234556676 59999998865554 44  89999987


Q ss_pred             CCCcccccCCCCCcEEEEEECCCCCeEEEecCC----CcEEEEeC
Q 012699          417 GHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD----HSVQVMSL  457 (458)
Q Consensus       417 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~l  457 (458)
                      ..............+.+++|+|||++|+....+    +.+.+|++
T Consensus       413 ~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          413 LQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             TTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             cCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            532322233336678899999999987765433    45777764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=4.2e-28  Score=223.32  Aligned_cols=267  Identities=13%  Similarity=0.114  Sum_probs=202.2

Q ss_pred             eeeccCCCCeEEEEeCC--------------CCCEEEEEeCC------CcEEEEecCCCCCCCccccccCCCceEEEEEe
Q 012699          141 ETFLGHTSPISCCRFSS--------------SGNNIASASVD------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWE  200 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~--------------~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  200 (458)
                      ..+.+|...+..+++++              .+..++.++.+      ++|++||+++....   ....+...+.+++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~---~l~~~~~~v~~~~~S  187 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF---VVHRSPQPLMSPAWS  187 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE---EEEEESSCEEEEEEC
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE---EEeCCCCcceeeEEc
Confidence            34667777777766654              25567666654      79999999754322   334567789999999


Q ss_pred             cCCCeEEEEEcCCC---cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE-EeecccCCCCcceeeccceeEEEE
Q 012699          201 CKSDRLLLIGTADG---GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-SAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       201 ~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                       ++++.|++++.++   .|++||+.+++... +..+  ...+.+++|+|+++.++ +++.++           ...|++|
T Consensus       188 -pdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g-----------~~~i~~~  252 (415)
T 2hqs_A          188 -PDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTG-----------SLNLYVM  252 (415)
T ss_dssp             -TTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTS-----------SCEEEEE
T ss_pred             -CCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCC-----------CceEEEE
Confidence             6788888888775   99999999988754 3322  25789999999999887 444332           1379999


Q ss_pred             ECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      |+.+++...   +..+...+.+++|+|+|++|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|+++
T Consensus       253 d~~~~~~~~---l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          253 DLASGQIRQ---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             ETTTCCEEE---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             ECCCCCEEe---CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEE
Confidence            999877632   3456678999999999999988876 44  688889987764 4455677789999999999999988


Q ss_pred             cCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEEEEEccCCCcccccCCC
Q 012699          354 GSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAPIYQVRGHASGMRTLPH  427 (458)
Q Consensus       354 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h  427 (458)
                      +.+   ..|++||+.+.....       +.   .+ ..+..++|+|+|++|++++.++   .|++||+.+. ....+.+|
T Consensus       329 ~~~~g~~~i~~~d~~~~~~~~-------l~---~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~  396 (415)
T 2hqs_A          329 SSNGGQQHIAKQDLATGGVQV-------LS---ST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPAT  396 (415)
T ss_dssp             EECSSCEEEEEEETTTCCEEE-------CC---CS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCS
T ss_pred             ECcCCceEEEEEECCCCCEEE-------ec---CC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCC
Confidence            764   589999998764321       11   11 2688999999999999988876   7999999755 45667789


Q ss_pred             CCcEEEEEECCCCC
Q 012699          428 GAAITTVDWHPTLP  441 (458)
Q Consensus       428 ~~~v~~~~~~~~~~  441 (458)
                      .+.|.+++|+|...
T Consensus       397 ~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          397 DGQVKFPAWSPYLH  410 (415)
T ss_dssp             SSEEEEEEECCCCC
T ss_pred             CCCCcCCccccccc
Confidence            99999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=6.4e-29  Score=228.78  Aligned_cols=283  Identities=11%  Similarity=0.084  Sum_probs=207.3

Q ss_pred             CCCeEEEEeCCCCC-EEEEEe----CCC----cEEEEec--CCCCCCCccccccCCCceEEEEEecC-------------
Q 012699          147 TSPISCCRFSSSGN-NIASAS----VDG----TVRIWTY--DSSTPASRNATIYCGTEIMSLEWECK-------------  202 (458)
Q Consensus       147 ~~~v~~~~~~~~~~-~l~s~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~-------------  202 (458)
                      ...+....|.+.|. ++++|+    .||    ++++||+  .+++.+.......+...+..+++.+.             
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            35677888888775 566776    467    8999999  77765422223344445555555421             


Q ss_pred             CCeEEEEEcCC------CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          203 SDRLLLIGTAD------GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       203 ~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      .+..++.++.+      +.|++||++.+. ...+..+.  ..+.+++|+|+++.+++++.+..          ...|++|
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~--~~v~~~~~Spdg~~la~~s~~~~----------~~~i~~~  208 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSP--QPLMSPAWSPDGSKLAYVTFESG----------RSALVIQ  208 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEES--SCEEEEEECTTSSEEEEEECTTS----------SCEEEEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCC--CcceeeEEcCCCCEEEEEEecCC----------CcEEEEE
Confidence            13445544443      799999998544 34444333  57999999999999999886631          1399999


Q ss_pred             ECCCCceeEEeecCCCCCcEEEEEEccCCCEEE-EEecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA-ASAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      |+.+++.....   .+...+.+++|+|+|++|+ +++.++  .|++||+.+++. ..+..|...+.+++|+|+|++|+++
T Consensus       209 d~~tg~~~~l~---~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          209 TLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             ETTTCCEEEEE---CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECCCCcEEEee---cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence            99998776433   4556799999999999888 566555  499999988765 5677888899999999999998887


Q ss_pred             cC-CC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCC
Q 012699          354 GS-DG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPH  427 (458)
Q Consensus       354 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h  427 (458)
                      +. ++  .|.+||+.+.....          ...+...+..++|+|+|++|++++.+   ..|++||+.+++. ..+..|
T Consensus       285 s~~~g~~~i~~~d~~~~~~~~----------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~  353 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQR----------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSST  353 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCEE----------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCS
T ss_pred             ECCCCCcEEEEEECCCCCEEE----------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCC
Confidence            76 45  67777887653211          11234568899999999999988864   5899999988754 344455


Q ss_pred             CCcEEEEEECCCCCeEEEecCCC---cEEEEeCC
Q 012699          428 GAAITTVDWHPTLPMFLTGSADH---SVQVMSLS  458 (458)
Q Consensus       428 ~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~l~  458 (458)
                      . .+.+++|+|+|++|++++.|+   .|++||++
T Consensus       354 ~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          354 F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            4 899999999999999888777   79999874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=6.3e-27  Score=210.73  Aligned_cols=277  Identities=10%  Similarity=0.188  Sum_probs=189.5

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-CcEEEEEcC--CCcee--eeccCCCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-GGIKAWNVD--AKRVV--CDLNTTDA  235 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~--~~~~~--~~~~~~~~  235 (458)
                      .+++++.|+.|++|++.............+...+..++|+ +++++|++++.+ +.|.+|++.  +++..  ..+...  
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--
Confidence            3445578999999999642222122334566778899999 667777777665 999999998  55533  333322  


Q ss_pred             CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC---CceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699          236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT---WKAMTVLPLGEDPPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (458)
                       ..+..++|+|+++.+++++...            +.|.+||+..   .+....+.   ....+.+++|+|+++++++++
T Consensus        84 -~~~~~~~~s~dg~~l~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           84 -GSLTHISTDHQGQFVFVGSYNA------------GNVSVTRLEDGLPVGVVDVVE---GLDGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             -SCCSEEEECTTSSEEEEEETTT------------TEEEEEEEETTEEEEEEEEEC---CCTTBCCCEECTTSSEEEEEE
T ss_pred             -CCCcEEEEcCCCCEEEEEecCC------------CeEEEEECCCCcccccccccc---CCCCceEEEECCCCCEEEEec
Confidence             3678999999999887776533            5899999943   33333332   224588899999999888877


Q ss_pred             -cCCeEEEEeCCC-Cceee----eeeC-CCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCC-CeeEEeecCCcccCCC
Q 012699          313 -VDGMIHMFDMSA-GLQIT----GWPA-HDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPE  383 (458)
Q Consensus       313 -~dg~i~v~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~  383 (458)
                       .++.|++||+.+ ++...    .+.. ....+..++|+|++++++++ ..++.|.+|++... +...............
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence             899999999987 54432    2232 34578899999999977554 57999999999642 2211111111111111


Q ss_pred             CCCCceeEEEEccCCCEEEEEe-CCccEEEEEccC--CC--cccccCCCCCcEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRG--HA--SGMRTLPHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSL  457 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l  457 (458)
                      .....+..++|+|+|++|+++. .++.|.+|++..  +.  ....+..+. .+.+++|+|++++|++++ .|+.|.+|++
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            2234577899999999888655 689999999983  21  111222333 388999999999877776 6899999965

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=2.4e-26  Score=228.70  Aligned_cols=285  Identities=11%  Similarity=0.116  Sum_probs=208.3

Q ss_pred             CCCeEEEEeCCCCCEEEEEeC-CC-----cEEEEecCCCCCCCccccccCC----------------------CceEEEE
Q 012699          147 TSPISCCRFSSSGNNIASASV-DG-----TVRIWTYDSSTPASRNATIYCG----------------------TEIMSLE  198 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~----------------------~~v~~~~  198 (458)
                      ...|.+++|+|||++|++++. |+     +|++||+.+++...........                      ..+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999998 88     8999999887653222111111                      2378899


Q ss_pred             EecCCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          199 WECKSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       199 ~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      |+ +++++|++++. +.|.+||+.++.  ....+..+  ...+..++|+|+|+.++.++.+              .|++|
T Consensus       116 ~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~--~~~~~~~~~SPDG~~la~~~~~--------------~i~~~  177 (741)
T 2ecf_A          116 WS-PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG--EGFATDAKLSPKGGFVSFIRGR--------------NLWVI  177 (741)
T ss_dssp             EC-TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS--SSCEEEEEECTTSSEEEEEETT--------------EEEEE
T ss_pred             EC-CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC--CcccccccCCCCCCEEEEEeCC--------------cEEEE
Confidence            99 77888888776 899999999882  22333333  2578999999999999988753              99999


Q ss_pred             ECCCCceeEEeecCCCCCc----------------EEEEEEccCCCEEEEEecCC-------------------------
Q 012699          277 NMKTWKAMTVLPLGEDPPA----------------ITSLCFNHNGKILAASAVDG-------------------------  315 (458)
Q Consensus       277 d~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~dg-------------------------  315 (458)
                      |+.+++......  .+...                +..++|+|||++|++++.|+                         
T Consensus       178 d~~~g~~~~~~~--~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          178 DLASGRQMQLTA--DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             ETTTTEEEECCC--CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             ecCCCCEEEecc--CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence            999877655432  12121                47799999999999988775                         


Q ss_pred             --------eEEEEeCCC-Cceeeeee--CCCCCeEEEEEcCCCCEEEEecC-----CCeEEEEeccCCCeeEEeecCCcc
Q 012699          316 --------MIHMFDMSA-GLQITGWP--AHDSAISSILFGPDETSIFSLGS-----DGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       316 --------~i~v~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                              .|++||+.+ ++......  .|...+..++| |||++|++++.     +..|++||+.++..........  
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--  332 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--  332 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--
Confidence                    899999988 77654432  47788999999 99999987653     5679999998765433221100  


Q ss_pred             cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE-EECCCCCeEE-EecCCC--cEEEE
Q 012699          380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV-DWHPTLPMFL-TGSADH--SVQVM  455 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-s~~~dg--~v~iw  455 (458)
                         ......+..++|+|||+++++++.++.++||.++.......+..|...|.++ .|+|+++.|+ +++.|+  .++||
T Consensus       333 ---~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          333 ---PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             ---SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred             ---CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence               0001134578999999988888889887888765322255566778888887 5999999765 455555  89999


Q ss_pred             eC
Q 012699          456 SL  457 (458)
Q Consensus       456 ~l  457 (458)
                      ++
T Consensus       410 ~~  411 (741)
T 2ecf_A          410 AV  411 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=8.8e-26  Score=224.01  Aligned_cols=294  Identities=13%  Similarity=0.068  Sum_probs=196.3

Q ss_pred             eeccCCC---CeEEEEeCCCCCEEEEEeCC---------CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEE
Q 012699          142 TFLGHTS---PISCCRFSSSGNNIASASVD---------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLI  209 (458)
Q Consensus       142 ~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  209 (458)
                      .+.+|..   .|.+++|||||++|++++.+         +.+.+||+.+++.........+...+..++|+ ++++.|++
T Consensus        52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S-PdG~~la~  130 (723)
T 1xfd_A           52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIF  130 (723)
T ss_dssp             EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEE
T ss_pred             EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC-CCCCEEEE
Confidence            3444544   48999999999999999764         78889999987752211112233347889999 67777887


Q ss_pred             EcCCCcEEEEEcCCCceeeeccCCCCC----------------CceeeeeecCCCCeEEEeecccCCCCcce--------
Q 012699          210 GTADGGIKAWNVDAKRVVCDLNTTDAF----------------PSVLDLKCSPVEPIFVSAAASRRYGSSNI--------  265 (458)
Q Consensus       210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------  265 (458)
                      ++. +.|++||+.+++.......+...                ..+..+.|+|+++.+++++.+...-....        
T Consensus       131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~  209 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI  209 (723)
T ss_dssp             EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred             EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence            775 79999999988776544432210                12378999999999998876531100000        


Q ss_pred             -------------eeccceeEEEEECCCCceeEEeecCC----CCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCC
Q 012699          266 -------------YSWGFASLTVWNMKTWKAMTVLPLGE----DPPAITSLCFNHNGKILAASAV----DGMIHMFDMSA  324 (458)
Q Consensus       266 -------------~~~~~g~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~  324 (458)
                                   .......|++||+.+++....+....    +...+..++|+|||+++++...    +..|++||+.+
T Consensus       210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                         00113489999999887655543211    2457899999999998877653    35799999999


Q ss_pred             CceeeeeeC-CCCCe----EEEEEcCCCCEEEE--ecCCC------eEEEEeccCCCe---eEEeecCCcccCCCCCCCc
Q 012699          325 GLQITGWPA-HDSAI----SSILFGPDETSIFS--LGSDG------KIIEWSLQNQGQ---VLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       325 ~~~~~~~~~-~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~  388 (458)
                      ++....+.. +...+    ..++|+|||+.|+.  +..++      .|.+||+...+.   ..      .+   ......
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~l---~~~~~~  360 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ------SI---TSGDWD  360 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC------BS---CCSSSC
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee------Ee---ecCCeE
Confidence            887665543 33433    37899999997775  44566      466677322222   11      11   112223


Q ss_pred             eeE-EEEccCCCEEEEEeCC---ccEEEEEccCCC--cccccCC---CCCcEEEEEECCCCCeEEEe
Q 012699          389 RHE-MALDVNGRRLLVTSGS---VRAPIYQVRGHA--SGMRTLP---HGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       389 v~~-~~~s~~g~~l~~~~~~---~~i~i~~~~~~~--~~~~~~~---h~~~v~~~~~~~~~~~l~s~  446 (458)
                      +.. ++|+|||+.|+..+.+   +.++||++....  ....+..   |...+..++|+|||++|+..
T Consensus       361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            443 6999999999876665   789999986532  2223332   67789999999999977754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=9.6e-26  Score=223.03  Aligned_cols=296  Identities=12%  Similarity=0.114  Sum_probs=205.0

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC--
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA--  223 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--  223 (458)
                      +...|.+++|+|| +.++.+. ++++++||+.+++...   ...+...+..++|+ ++++.|+++ .++.|++||+.+  
T Consensus        80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY---LFDTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLG  152 (706)
T ss_dssp             --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE---EECCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTT
T ss_pred             cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE---ccCCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCccc
Confidence            3467999999999 6665553 5999999998775432   23345668889999 677777775 679999999998  


Q ss_pred             ---CceeeeccCCCC------------CCceeeeeecCCCCeEEEeecccCCCCcc-e-------------------eec
Q 012699          224 ---KRVVCDLNTTDA------------FPSVLDLKCSPVEPIFVSAAASRRYGSSN-I-------------------YSW  268 (458)
Q Consensus       224 ---~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~  268 (458)
                         ++..........            ...+..+.|+|+++.+++++.+...-... .                   ...
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               776544333221            01257899999999999887432110000 0                   011


Q ss_pred             cceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeeeee--CCCC---Ce
Q 012699          269 GFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITGWP--AHDS---AI  338 (458)
Q Consensus       269 ~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~--~~~~---~v  338 (458)
                      ....|.+||+.+++.........+...+.+++|+|||++|++++.++     .|++||+.+++....+.  .+..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            33689999999887655443334566799999999999999987775     89999999884333332  2222   34


Q ss_pred             EEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE-EEEccCCCEEEEEeCC-c----cE
Q 012699          339 SSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE-MALDVNGRRLLVTSGS-V----RA  410 (458)
Q Consensus       339 ~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~-~----~i  410 (458)
                      ..++|+|  +|+++++++.|+.+++|++..........        ..+...+.. ++|+|+|+.|++++.+ +    .|
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l--------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV--------TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC--------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec--------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence            6789999  99999999999999999887322222111        123445665 7999999988776654 3    56


Q ss_pred             EEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC----CcEEEEeCC
Q 012699          411 PIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD----HSVQVMSLS  458 (458)
Q Consensus       411 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~l~  458 (458)
                      +.|++.++.  .....|...+.+++|+|||++|+..+.+    +.|++||++
T Consensus       385 ~~~d~~~~~--~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          385 YCIDIKGGK--TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             EEEETTCCC--CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             EEEEcCCCC--ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence            666766653  3344577789999999999988766433    569999863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=7e-25  Score=196.33  Aligned_cols=277  Identities=11%  Similarity=0.105  Sum_probs=191.5

Q ss_pred             EEeCCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCe-EEEEEcCCCcEEEEEcCCCce-eee
Q 012699          153 CRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKRV-VCD  229 (458)
Q Consensus       153 ~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~-~~~  229 (458)
                      ..|.+++++ +++++.+++|.+||..+++.....  ..+...+ .++|+ ++++ +++++..++.|.+||+.+++. ...
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI--TLGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE--ECCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE--EccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            345665555 678888999999999988764322  2234455 99999 5555 445555589999999999887 555


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (458)
                      +....  .+..+++++|+++.+++...+.          +.+.|.+||+.+++....+...   ....+++|+|+|++++
T Consensus        79 ~~~~~--~~~~~~~~s~dg~~l~~~~~~~----------~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~  143 (331)
T 3u4y_A           79 IQEGQ--SSMADVDITPDDQFAVTVTGLN----------HPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLI  143 (331)
T ss_dssp             EEECS--SCCCCEEECTTSSEEEECCCSS----------SSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEE
T ss_pred             cccCC--CCccceEECCCCCEEEEecCCC----------CcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEE
Confidence            54443  3344499999999988544331          0028999999999888877643   3468999999998665


Q ss_pred             EE-ecCCe-EEEEeCCCCcee----eeeeCCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCe---eEEeecCCcc
Q 012699          310 AS-AVDGM-IHMFDMSAGLQI----TGWPAHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQ---VLWTRNCSRF  379 (458)
Q Consensus       310 ~~-~~dg~-i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~---~~~~~~~~~~  379 (458)
                      ++ ..++. |.+|++.....+    ............++|+|+|++++ ++..++.|.+||+.+.+.   .....     
T Consensus       144 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-----  218 (331)
T 3u4y_A          144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-----  218 (331)
T ss_dssp             EEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----
T ss_pred             EEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----
Confidence            55 45578 999998753332    12223455689999999999655 455689999999987654   22111     


Q ss_pred             cCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCc--cc----ccCCCC---CcEEEEEECCCCCeEEE-ecC
Q 012699          380 CDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHAS--GM----RTLPHG---AAITTVDWHPTLPMFLT-GSA  448 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~--~~----~~~~h~---~~v~~~~~~~~~~~l~s-~~~  448 (458)
                           ....+..++|+|+|++|++++ .++.|.+||+.+++.  ..    .+..+.   .....++|+|++++|++ +..
T Consensus       219 -----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  293 (331)
T 3u4y_A          219 -----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI  293 (331)
T ss_dssp             -----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred             -----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence                 224567899999999887765 478899999987654  11    111111   22356899999997755 455


Q ss_pred             CCcEEEEeCC
Q 012699          449 DHSVQVMSLS  458 (458)
Q Consensus       449 dg~v~iw~l~  458 (458)
                      ++.|++||++
T Consensus       294 ~~~v~v~d~~  303 (331)
T 3u4y_A          294 SRELKVFTIS  303 (331)
T ss_dssp             TTEEEEEETT
T ss_pred             CCcEEEEEec
Confidence            6799999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=5.9e-26  Score=225.25  Aligned_cols=284  Identities=10%  Similarity=0.050  Sum_probs=200.6

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCC---ceEEEEEecCCCeEEEEEcCC---------CcE
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWECKSDRLLLIGTAD---------GGI  216 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d---------g~i  216 (458)
                      .+.+++|+|||+++++ +.||+|++||+.+++....  ...+..   .+.+++|+ +++++|++++.+         +.+
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~--~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL--IEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE--ECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE--eccccccccccceEEEC-CCCCEEEEEecCccceeecceeeE
Confidence            4678899999998776 7899999999998875421  112222   48999999 778888888764         788


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC---
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP---  293 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~---  293 (458)
                      .+||+.+++.........+...+..++|+|+|+.++.++..              .|++||+.+++...........   
T Consensus        94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~--------------~i~~~~~~~g~~~~~~~~~~~~~~~  159 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN--------------NIYYCAHVGKQAIRVVSTGKEGVIY  159 (723)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT--------------EEEEESSSSSCCEEEECCCBTTTEE
T ss_pred             EEEECCCCceEeccCCccccccccccEECCCCCEEEEEECC--------------eEEEEECCCCceEEEecCCCCCceE
Confidence            89999998763222222222348899999999999988763              9999999988776654321111   


Q ss_pred             -------------CcEEEEEEccCCCEEEEEecCC----------------------------------eEEEEeCCCCc
Q 012699          294 -------------PAITSLCFNHNGKILAASAVDG----------------------------------MIHMFDMSAGL  326 (458)
Q Consensus       294 -------------~~i~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~  326 (458)
                                   ..+.+++|+|||++|++++.++                                  .|++||+.+++
T Consensus       160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                         1237899999999999987653                                  79999999887


Q ss_pred             eeeeeeCC------CCCeEEEEEcCCCCEEEEecC----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCce----eEE
Q 012699          327 QITGWPAH------DSAISSILFGPDETSIFSLGS----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR----HEM  392 (458)
Q Consensus       327 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~  392 (458)
                      ....+..+      ...+..++|+|||++|++.+.    +..|++||+.+++.......        .+...+    ..+
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~~  311 (723)
T 1xfd_A          240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--------ESEAWLHRQNEEP  311 (723)
T ss_dssp             CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------ECSSCCCCCCCCC
T ss_pred             eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------ccCCEEeccCCCc
Confidence            65666554      567899999999998876643    45799999987654322111        011111    368


Q ss_pred             EEccCCCEEEEE--eCCc------cEEEEE-ccCCCc--ccccCCCCCcEEE-EEECCCCCeEEEecCC---CcEEEEeC
Q 012699          393 ALDVNGRRLLVT--SGSV------RAPIYQ-VRGHAS--GMRTLPHGAAITT-VDWHPTLPMFLTGSAD---HSVQVMSL  457 (458)
Q Consensus       393 ~~s~~g~~l~~~--~~~~------~i~i~~-~~~~~~--~~~~~~h~~~v~~-~~~~~~~~~l~s~~~d---g~v~iw~l  457 (458)
                      +|+|||+.|+..  ..++      .|++|| ..+...  ...+..+...+.. ++|+|||+.|+..+.+   +.++||++
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence            999999988764  3455      577777 344331  4444444444554 6999999988765544   78999986


Q ss_pred             C
Q 012699          458 S  458 (458)
Q Consensus       458 ~  458 (458)
                      +
T Consensus       392 ~  392 (723)
T 1xfd_A          392 N  392 (723)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.1e-24  Score=196.92  Aligned_cols=274  Identities=11%  Similarity=0.045  Sum_probs=208.0

Q ss_pred             CCCeEEEEeCCCCCEEEEEeC-------CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          147 TSPISCCRFSSSGNNIASASV-------DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      ...+..++|+|+++++++++.       ++.|.+||..+++...   .......+..++|+|.+..++++...++.|.+|
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~  116 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ---AIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI  116 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE---EEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE---EEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence            356789999999999888774       5689999998877543   223345577889995444466667778999999


Q ss_pred             EcCCCceeeeccCCCCCC-------ceeeeeecCCCCeEEEeec-ccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          220 NVDAKRVVCDLNTTDAFP-------SVLDLKCSPVEPIFVSAAA-SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      |..+++....+.......       .+..+.++|+++.++++.. +.            +.|.+||+.+++....+..  
T Consensus       117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~------------~~i~~~d~~~~~~~~~~~~--  182 (353)
T 3vgz_A          117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE------------SVIWVVDGGNIKLKTAIQN--  182 (353)
T ss_dssp             ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS------------CEEEEEETTTTEEEEEECC--
T ss_pred             eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC------------ceEEEEcCCCCceEEEecC--
Confidence            999999877776543211       2688999999998777663 22            5899999999988887752  


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC----CCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA----HDSAISSILFGPDETSIFSLGS-DGKIIEWSLQN  366 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~  366 (458)
                      +...+..++|+|+++++++++.++.|.+||+.+++.+..+..    +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            223467899999999999999999999999999988877764    4556888999999997766655 59999999987


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      .+.......           .....++|+|+|++++++. .++.|.+||..+.+....+. ....+.+++|+|+|++|++
T Consensus       263 ~~~~~~~~~-----------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          263 GNILAKVAA-----------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYV  330 (353)
T ss_dssp             CCEEEEEEC-----------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEE
T ss_pred             CcEEEEEEc-----------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEE
Confidence            655433221           0124699999999777766 58999999998875544433 3457899999999996665


Q ss_pred             ecCC
Q 012699          446 GSAD  449 (458)
Q Consensus       446 ~~~d  449 (458)
                      +..+
T Consensus       331 ~~~~  334 (353)
T 3vgz_A          331 SVKQ  334 (353)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            5444

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.4e-24  Score=194.40  Aligned_cols=284  Identities=11%  Similarity=0.103  Sum_probs=195.0

Q ss_pred             cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699           82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN  161 (458)
Q Consensus        82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  161 (458)
                      ....+++.+.++.+.+|++....                                  ....+..+...+ +++|+|++++
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~----------------------------------~~~~~~~~~~~~-~~~~s~dg~~   53 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLE----------------------------------ILNQITLGYDFV-DTAITSDCSN   53 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCC----------------------------------EEEEEECCCCEE-EEEECSSSCE
T ss_pred             CCEEEEEecCCCeEEEEeCcccc----------------------------------eeeeEEccCCcc-eEEEcCCCCE
Confidence            45667788889999999975532                                  223333445556 9999999997


Q ss_pred             EEEEeC-CCcEEEEecCCCCCCCccccccCCCceEE-EEEecCCCeEEEEEcCCC---cEEEEEcCCCceeeeccCCCCC
Q 012699          162 IASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWECKSDRLLLIGTADG---GIKAWNVDAKRVVCDLNTTDAF  236 (458)
Q Consensus       162 l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~  236 (458)
                      +++++. ++.|.+||+.+++..  ............ ++|+ +++++++++..++   .|.+||+.+++.+..+...   
T Consensus        54 l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---  127 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEPPK--VVAIQEGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP---  127 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSSCE--EEEEEECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC---
T ss_pred             EEEEeCCCCeEEEEECCCCcee--EEecccCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC---
Confidence            766655 889999999887651  112223333444 9999 6777777555553   8999999999988776654   


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeecccee-EEEEECCCCceeEEe--ecCCCCCcEEEEEEccCCCEEEEEe-
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS-LTVWNMKTWKAMTVL--PLGEDPPAITSLCFNHNGKILAASA-  312 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~i~d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-  312 (458)
                      .....++|+|+++.++++....            +. +.+|++.........  ........+..++|+|+|+++++++ 
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred             CCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC
Confidence            3568999999998766665432            36 999998764432111  1112234579999999999765554 


Q ss_pred             cCCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699          313 VDGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       313 ~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      .++.|.+||+.+++.   +..+.. ...+..++|+|+|+++++++ .++.|.+||+.+++....................
T Consensus       196 ~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
T 3u4y_A          196 IGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFG  274 (331)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTT
T ss_pred             CCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccc
Confidence            588999999999888   777764 46678999999999776554 5788999999876442111100010000111112


Q ss_pred             eeEEEEccCCCEEEEEeC-CccEEEEEccCCC
Q 012699          389 RHEMALDVNGRRLLVTSG-SVRAPIYQVRGHA  419 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~  419 (458)
                      ...++|+|||++|++++. ++.|.+||+....
T Consensus       275 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          275 ANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             ccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            256899999999887766 5699999998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.1e-24  Score=195.93  Aligned_cols=271  Identities=9%  Similarity=0.102  Sum_probs=181.8

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCC-CcEEEEecC--CCCCCCccccccCCCceEEEEEecCCCeEEEE-EcCCCcEEEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASVD-GTVRIWTYD--SSTPASRNATIYCGTEIMSLEWECKSDRLLLI-GTADGGIKAWN  220 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~wd  220 (458)
                      .|...+.+++|+|++++|++++.+ +.|++|++.  +++... .........+..++|+ ++++++++ +..++.|.+||
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccccccCCCCcEEEEc-CCCCEEEEEecCCCeEEEEE
Confidence            466788999999999999888876 999999997  444321 1222233478899999 55665554 45588999999


Q ss_pred             cC---CCceeeeccCCCCCCceeeeeecCCCCeEEEee-cccCCCCcceeeccceeEEEEECCC-CceeE----EeecCC
Q 012699          221 VD---AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKT-WKAMT----VLPLGE  291 (458)
Q Consensus       221 ~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~----~~~~~~  291 (458)
                      +.   ..+....+...   ..+..++|+|+++.+++++ .+             +.|.+||+.+ ++...    .+.. .
T Consensus       113 ~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~~~~~-~  175 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQ-------------DRICLFTVSDDGHLVAQDPAEVTT-V  175 (343)
T ss_dssp             EETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGG-------------TEEEEEEECTTSCEEEEEEEEEEC-S
T ss_pred             CCCCccccccccccCC---CCceEEEECCCCCEEEEecCCC-------------CEEEEEEecCCCceeeeccccccc-C
Confidence            94   33344443332   4588999999999888776 44             5999999987 55433    2222 2


Q ss_pred             CCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCC--Cce--eeeee---CC---CCCeEEEEEcCCCCEEE-EecCCCeE
Q 012699          292 DPPAITSLCFNHNGKILAASA-VDGMIHMFDMSA--GLQ--ITGWP---AH---DSAISSILFGPDETSIF-SLGSDGKI  359 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~--~~~--~~~~~---~~---~~~v~~~~~~~~~~~l~-~~~~dg~i  359 (458)
                      ....+..++|+|+++++++++ .++.|.+||+..  ++.  ...+.   ..   ...+..++|+|++++|+ +...++.|
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i  255 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI  255 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence            234688999999999776555 789999999953  332  22222   11   23567899999998877 55579999


Q ss_pred             EEEeccCCC-eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEcc--CCCc-ccccCCCCCcEEEE
Q 012699          360 IEWSLQNQG-QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVR--GHAS-GMRTLPHGAAITTV  434 (458)
Q Consensus       360 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~--~~~~-~~~~~~h~~~v~~~  434 (458)
                      .+||+.... .......   .    .....+..++|+|+|++|++++ .++.+.+|+++  ++.. ............++
T Consensus       256 ~v~d~~~~~~~~~~~~~---~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i  328 (343)
T 1ri6_A          256 TVFSVSEDGSVLSKEGF---Q----PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV  328 (343)
T ss_dssp             EEEEECTTSCCEEEEEE---E----ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred             EEEEEcCCCCceEEeee---e----cCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeE
Confidence            999998321 1111100   0    0112277899999999999888 57999999665  3321 11111223456777


Q ss_pred             EECCCCC
Q 012699          435 DWHPTLP  441 (458)
Q Consensus       435 ~~~~~~~  441 (458)
                      +|.|+.+
T Consensus       329 ~~~~~~~  335 (343)
T 1ri6_A          329 VVNAHEG  335 (343)
T ss_dssp             EEEEEC-
T ss_pred             EEEcccC
Confidence            8877654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=8.4e-25  Score=196.28  Aligned_cols=278  Identities=11%  Similarity=0.088  Sum_probs=199.0

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCC---ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC-
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA-  235 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-  235 (458)
                      ++|++++.+++|.+||+.+++...   ......   .+..++|+|.+..+++++..++.|.+||+.+++....+..... 
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDK---VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE---EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEE---EEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            478999999999999998876543   222233   5788999954445567777789999999999988776654320 


Q ss_pred             --CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699          236 --FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV  313 (458)
Q Consensus       236 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  313 (458)
                        ...+..++++|+++.++++.......... ....++.|.+||+.+++....+...   ..+.+++|+|++++|+++  
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTH-FEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSC-EEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--
T ss_pred             cccccccceEECCCCCEEEEEeccccccccc-ccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--
Confidence              11567899999999888775210000000 0001259999999998888777642   346788999999988887  


Q ss_pred             CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-C-----------------------eEEEEeccCCCe
Q 012699          314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-G-----------------------KIIEWSLQNQGQ  369 (458)
Q Consensus       314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----------------------~i~iwd~~~~~~  369 (458)
                      ++.|++||+.+++.+..+..+... ..+.|+|+++.++..+.+ +                       .|.+||+.+.+.
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            688999999999888777654411 123789999877655433 2                       468999987654


Q ss_pred             eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          370 VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      .....        ..+...+..++|+|+|++++++  ++.|++||+.+.+....+. ....+.+++|+|++++|++++.|
T Consensus       232 ~~~~~--------~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~  300 (337)
T 1pby_B          232 AMREV--------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL  300 (337)
T ss_dssp             EEEEE--------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred             eEeec--------CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCC
Confidence            31111        1233457889999999999988  7899999998875443333 33567899999999999888999


Q ss_pred             CcEEEEeCC
Q 012699          450 HSVQVMSLS  458 (458)
Q Consensus       450 g~v~iw~l~  458 (458)
                      +.|++||+.
T Consensus       301 ~~i~v~d~~  309 (337)
T 1pby_B          301 GDLAAYDAE  309 (337)
T ss_dssp             SEEEEEETT
T ss_pred             CcEEEEECc
Confidence            999999973

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=2.2e-24  Score=213.28  Aligned_cols=252  Identities=15%  Similarity=0.165  Sum_probs=179.8

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC-----CCCCCccccccCCC--------------ceEEEEEecCCCe
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-----STPASRNATIYCGT--------------EIMSLEWECKSDR  205 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~  205 (458)
                      .|...+.+++|+|||++|+++ .|+.|++||+.+     ++....  ......              .+.++.|+ ++++
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~  193 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQREFGIEKGTFWS-PKGS  193 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSS
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhhcCCCceEEEC-CCCC
Confidence            345567788999999999985 689999999987     654321  111112              14789999 7788


Q ss_pred             EEEEEc---------------------------------CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699          206 LLLIGT---------------------------------ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       206 ~l~~~~---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      +|++++                                 .+..|.+||+.+++.........+...+..++|+|+++.++
T Consensus       194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence            888876                                 44689999999988655443333445789999999999988


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC---CcEEEEEEcc--CCCEEEEEecCCeEEEEeCC-CCc
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP---PAITSLCFNH--NGKILAASAVDGMIHMFDMS-AGL  326 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~~  326 (458)
                      +++.++..        ....|.+||+.+++....+....+.   ..+..++|+|  +|++++++..+|.+++|++. ++.
T Consensus       274 ~~~~~~~~--------~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~  345 (706)
T 2z3z_A          274 VAEVNRAQ--------NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR  345 (706)
T ss_dssp             EEEECTTS--------CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred             EEEeCCCC--------CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence            87655311        1248999999998433333211121   1246789999  99999999999999999876 567


Q ss_pred             eeeeeeCCCCCeEE-EEEcCCCCEEEEecC-CC----eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          327 QITGWPAHDSAISS-ILFGPDETSIFSLGS-DG----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       327 ~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      .+..+..|...+.. ++|+|+++.|+.++. ++    .|..||+.+... .      .+    .+...+..++|||||++
T Consensus       346 ~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~------~l----~~~~~~~~~~~spdg~~  414 (706)
T 2z3z_A          346 LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K------DL----TPESGMHRTQLSPDGSA  414 (706)
T ss_dssp             EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E------ES----CCSSSEEEEEECTTSSE
T ss_pred             EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e------ec----cCCCceEEEEECCCCCE
Confidence            77788888888877 799999988765544 44    566667665421 1      11    13445889999999999


Q ss_pred             EEEEeCC----ccEEEEEccCCC
Q 012699          401 LLVTSGS----VRAPIYQVRGHA  419 (458)
Q Consensus       401 l~~~~~~----~~i~i~~~~~~~  419 (458)
                      |+....+    +.+++||+.+++
T Consensus       415 l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          415 IIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEecCCCCCcEEEEEECCCCe
Confidence            8877543    569999998765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=2e-24  Score=190.00  Aligned_cols=260  Identities=12%  Similarity=0.139  Sum_probs=191.4

Q ss_pred             EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC-CceeeeccCCCCCCceeee
Q 012699          164 SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA-KRVVCDLNTTDAFPSVLDL  242 (458)
Q Consensus       164 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~v~~~  242 (458)
                      +++.|++|++||+.+++..   ....+...+.+++|+ +++++|++++ ++.|.+||+.+ ++.......+ ....+.++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~---~~~~~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~   90 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR---VVWQTPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-ATICNNDH   90 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE---EEEEESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-CCCBCSCC
T ss_pred             CCCcceeEEEEeCCCCcee---eeccCCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-ccccccce
Confidence            3467899999999877643   234467789999999 6778888876 78999999999 7766554433 22568899


Q ss_pred             eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE-EEecCCeEEEEe
Q 012699          243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA-ASAVDGMIHMFD  321 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d  321 (458)
                      +|+|+++.++++..+..         +...|..++..+++. ..+.  .+ ..+..++|+|++++|+ ++..++.+.+|+
T Consensus        91 ~~spdg~~l~~~~~~~~---------~~~~l~~~~~~~~~~-~~~~--~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           91 GISPDGALYAISDKVEF---------GKSAIYLLPSTGGTP-RLMT--KN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             EECTTSSEEEEEECTTT---------SSCEEEEEETTCCCC-EECC--SS-SSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             EECCCCCEEEEEEeCCC---------CcceEEEEECCCCce-EEee--cC-CCccceEECCCCCEEEEEECCCCceEEEE
Confidence            99999999998884321         113666667666553 3332  22 3488999999999887 677899999998


Q ss_pred             CCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699          322 MSA-GLQITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR  399 (458)
Q Consensus       322 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  399 (458)
                      ++. +.....+..+...+.+++|+|++++|+.++ .++.+++|++.........        ...+...+..++|+|+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~s~dg~  229 (297)
T 2ojh_A          158 MDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER--------ITDSAYGDWFPHPSPSGD  229 (297)
T ss_dssp             EETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE--------CCCCSEEEEEEEECTTSS
T ss_pred             EECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE--------EecCCcccCCeEECCCCC
Confidence            642 334456677888999999999999887665 5899999998733222111        123445788899999999


Q ss_pred             EEEEEeCC-----------ccEEEEEccCCCcc--cccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699          400 RLLVTSGS-----------VRAPIYQVRGHASG--MRTLPHGAAITTVDWHPTLPMFLTGSADH  450 (458)
Q Consensus       400 ~l~~~~~~-----------~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  450 (458)
                      +|++++.+           +.|++||+.+.+..  ....+|...+.+++|+|+++.|++++.|.
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99988865           56999999887543  22337888999999999999888877653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.2e-23  Score=189.65  Aligned_cols=277  Identities=13%  Similarity=0.130  Sum_probs=180.4

Q ss_pred             CCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699          167 VDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDL  242 (458)
Q Consensus       167 ~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~  242 (458)
                      .++.|.+|+++...... ......+...+..++|+ ++++ |++++.   ++.|.+|++.+++.........+...+..+
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~   91 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV   91 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc-cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence            35668888776432211 11223344667789999 5677 554443   689999999877632221111122467889


Q ss_pred             eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-Cc--eeEEeecCCC-------CCcEEEEEEccCCCEEEEEe
Q 012699          243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WK--AMTVLPLGED-------PPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~--~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~  312 (458)
                      +++|+++.+++++...            +.+.+|++.. +.  .+..+...+.       ...+.+++|+|+|+++++..
T Consensus        92 a~spdg~~l~~~~~~~------------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           92 AVDEARQLVYSANYHK------------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEETTTTEEEEEETTT------------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             EECCCCCEEEEEeCCC------------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            9999999888887433            5999999963 22  2333322211       12488999999999666666


Q ss_pred             cCCeEEEEeCC-CCcee--eeeeCC-CCCeEEEEEcCCCCEEEE-ecCCCeEEEEeccCC-CeeEEeecCCcccCCCCCC
Q 012699          313 VDGMIHMFDMS-AGLQI--TGWPAH-DSAISSILFGPDETSIFS-LGSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSK  386 (458)
Q Consensus       313 ~dg~i~v~d~~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  386 (458)
                      .++.|++|++. +++..  ..+..+ ...+..++|+|+|+++++ ...++.+.+|++... +..................
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence            78899999998 45432  222222 336788999999996665 566899999999852 2221111111111111222


Q ss_pred             CceeEEEEccCCCEEEEE-eCCccEEEEEccCC---CcccccCCCCCcEEEEEECCCCCeEEEecC-CCcEEEEeC
Q 012699          387 SCRHEMALDVNGRRLLVT-SGSVRAPIYQVRGH---ASGMRTLPHGAAITTVDWHPTLPMFLTGSA-DHSVQVMSL  457 (458)
Q Consensus       387 ~~v~~~~~s~~g~~l~~~-~~~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~l  457 (458)
                      ..+..++|+|||++|+++ ..++.|.+|++...   ........+...+.+++|+|||++|++++. ++.|.+|++
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            568899999999988654 45899999999733   222223345667899999999998887765 589999965

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=1.5e-24  Score=209.47  Aligned_cols=269  Identities=10%  Similarity=0.076  Sum_probs=193.8

Q ss_pred             CCCeEEEEeCCCCCEEEEEeC-CCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcC---CCcEEEEEc
Q 012699          147 TSPISCCRFSSSGNNIASASV-DGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTA---DGGIKAWNV  221 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~  221 (458)
                      ..+|++++|+|||++||+++. ||+++||++++++...   ...+. ..+..++|+ ++ ++++++..   +....+|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCC-CC-eEEEEeccCCCCcceEEEEE
Confidence            567999999999999999887 9999999986654422   22333 578999999 55 77777765   455666655


Q ss_pred             CC--CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          222 DA--KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       222 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      ..  ......+...   ......+|+|+++.++..+...            +.+.+||+.+++........   .  .++
T Consensus        96 ~~~~~g~~~~l~~~---~~~~~~~~s~dg~~~~~~s~~~------------~~~~l~d~~~g~~~~l~~~~---~--~~~  155 (582)
T 3o4h_A           96 NTSRPGEEQRLEAV---KPMRILSGVDTGEAVVFTGATE------------DRVALYALDGGGLRELARLP---G--FGF  155 (582)
T ss_dssp             ETTSTTCCEECTTS---CSBEEEEEEECSSCEEEEEECS------------SCEEEEEEETTEEEEEEEES---S--CEE
T ss_pred             eccCCCccccccCC---CCceeeeeCCCCCeEEEEecCC------------CCceEEEccCCcEEEeecCC---C--ceE
Confidence            43  2222233322   2344568888886433322221            25669999988766554321   2  789


Q ss_pred             EEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--eEEEEeccCCCeeEEe
Q 012699          300 CFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG--KIIEWSLQNQGQVLWT  373 (458)
Q Consensus       300 ~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~  373 (458)
                      +|+|||++|++++.+    +.|++||+.+++.. .+..|...+..++|+|||++|+++..++  .|++||+.++... ..
T Consensus       156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~  233 (582)
T 3o4h_A          156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL  233 (582)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred             EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence            999999999988877    78999999887754 6678888999999999999999888888  8999999876543 11


Q ss_pred             ecCCcccCCCCCCCceeEEE--------EccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699          374 RNCSRFCDPESSKSCRHEMA--------LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  445 (458)
                               ..+...+..++        |+|||+++++++.++.+++|++  ++...   .+.+.+.+++|+ +++++++
T Consensus       234 ---------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          234 ---------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             ---------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred             ---------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence                     12334445555        9999988899999999999999  32222   344679999999 9998888


Q ss_pred             ecCCCc---EEEEeC
Q 012699          446 GSADHS---VQVMSL  457 (458)
Q Consensus       446 ~~~dg~---v~iw~l  457 (458)
                      ++.+..   +.+|++
T Consensus       299 ~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          299 HTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEETTEEEEEEEETT
T ss_pred             EcCCCCCCeEEEEcC
Confidence            877743   666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.2e-23  Score=188.70  Aligned_cols=273  Identities=8%  Similarity=0.014  Sum_probs=198.3

Q ss_pred             eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCC-CeEEEEeCCCCCE
Q 012699           84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTS-PISCCRFSSSGNN  161 (458)
Q Consensus        84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~  161 (458)
                      +++++++.++.+.+|++....                                  .+..+. ++.. .+.+++|+|++++
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~s~dg~~   47 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA----------------------------------VDKVITIADAGPTPMVPMVAPGGRI   47 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE----------------------------------EEEEEECTTCTTCCCCEEECTTSSE
T ss_pred             cEEEEcCCCCeEEEEECCCCc----------------------------------EEEEEEcCCCCCCccceEEcCCCCE
Confidence            578889999999999975422                                  222222 2222 4778999999987


Q ss_pred             E-EEEeCCCcEEEEecCCCCCCCcccccc---CCCceEEEEEecCCCeEEEEEc------------CCCcEEEEEcCCCc
Q 012699          162 I-ASASVDGTVRIWTYDSSTPASRNATIY---CGTEIMSLEWECKSDRLLLIGT------------ADGGIKAWNVDAKR  225 (458)
Q Consensus       162 l-~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~  225 (458)
                      + +++..++.|.+||+.+++.........   +...+..++|+ +++++++++.            .++.|.+||+.+++
T Consensus        48 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~  126 (337)
T 1pby_B           48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS  126 (337)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred             EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCc
Confidence            6 556668899999998876543221111   01156788999 6777777775            57999999999988


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ....+...   ..+..++|+|+++.++++  +             +.|.+||+.+++....+........   +.|+|++
T Consensus       127 ~~~~~~~~---~~~~~~~~s~dg~~l~~~--~-------------~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg  185 (337)
T 1pby_B          127 RRKAFEAP---RQITMLAWARDGSKLYGL--G-------------RDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDV  185 (337)
T ss_dssp             EEEEEECC---SSCCCEEECTTSSCEEEE--S-------------SSEEEEETTTTEEEEEECSTTTTTT---TBCCCBC
T ss_pred             EEEEEeCC---CCcceeEECCCCCEEEEe--C-------------CeEEEEECCCCcEeeeeeccccCCC---ceeCCCc
Confidence            87766553   357789999999988877  2             4899999999988877764432222   3789998


Q ss_pred             CEEEEEecCC------------------------eEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          306 KILAASAVDG------------------------MIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       306 ~~l~~~~~dg------------------------~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                      +.+++.+..+                        .|.+||+.+++.. ..+..+...+.+++|+|++++++++  ++.|.
T Consensus       186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~  263 (337)
T 1pby_B          186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence            8765544322                        4789999988764 2334566778899999999999988  79999


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~  424 (458)
                      +||+.+.+......          ....+..++|+|+|++|++++.++.|++||+.+.+....+
T Consensus       264 ~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          264 SFDLEKNASIKRVP----------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEETTTTEEEEEEE----------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEECCCCcCcceec----------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            99998764433221          1234678999999999999988999999999887654443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=1.4e-23  Score=202.61  Aligned_cols=233  Identities=9%  Similarity=0.049  Sum_probs=168.8

Q ss_pred             CCeEEEEeCCCCCEEEEEeC---CCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          148 SPISCCRFSSSGNNIASASV---DGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      ..+..++|+|| +.+++++.   +...++|.+..  .....   ...........+|+|.....+++...++.+.+||+.
T Consensus        65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~  140 (582)
T 3o4h_A           65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALD  140 (582)
T ss_dssp             SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred             cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc---cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence            57889999999 77777765   45567766544  22211   112222344667885554545555555566699999


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      +++........   .  .+++|+|+|+.+++++.+..         +.+.|++||+.+++... +  ..+...+..++|+
T Consensus       141 ~g~~~~l~~~~---~--~~~~~spDG~~la~~~~~~~---------~~~~i~~~d~~~g~~~~-l--~~~~~~~~~~~~S  203 (582)
T 3o4h_A          141 GGGLRELARLP---G--FGFVSDIRGDLIAGLGFFGG---------GRVSLFTSNLSSGGLRV-F--DSGEGSFSSASIS  203 (582)
T ss_dssp             TTEEEEEEEES---S--CEEEEEEETTEEEEEEEEET---------TEEEEEEEETTTCCCEE-E--CCSSCEEEEEEEC
T ss_pred             CCcEEEeecCC---C--ceEEECCCCCEEEEEEEcCC---------CCeEEEEEcCCCCCceE-e--ecCCCccccceEC
Confidence            98765544322   1  78999999999998776521         11379999999877653 3  3566778999999


Q ss_pred             cCCCEEEEEecCC--eEEEEeCCCCceeeeeeCCCCCeEEEE--------EcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699          303 HNGKILAASAVDG--MIHMFDMSAGLQITGWPAHDSAISSIL--------FGPDETSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       303 ~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                      |||++|+++..++  .|++||+.+++.. .+..|...+..++        |+|||..+++++.|+.+++|++  + ....
T Consensus       204 pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~  279 (582)
T 3o4h_A          204 PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVE  279 (582)
T ss_dssp             TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEEC
T ss_pred             CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ceec
Confidence            9999999888888  8999999988877 7777877777777        9999988899999999999999  2 2211


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccC
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRG  417 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~  417 (458)
                                 .....+..++|+ +++++++++.+   ..+++++..+
T Consensus       280 -----------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          280 -----------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             -----------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             -----------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence                       122568899999 99999888776   3577777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.92  E-value=1.8e-23  Score=188.60  Aligned_cols=279  Identities=10%  Similarity=0.023  Sum_probs=188.2

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCC--ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT--EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      .+++++++.++++++.+++|++||+.+++....   ...+.  .+..++|+|.+..++++...++.|.+||+.+++....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS---CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEE---EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEE---EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            356788888999999999999999988765432   22223  5788999944334556667789999999999988776


Q ss_pred             ccCCCC----CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          230 LNTTDA----FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       230 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      +.....    ...+..++++|+++.++++..+..... ..+....+.|.+||+.+++....+....++..+.+++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg  159 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN-DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  159 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccc-cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence            654321    123778999999999998875410000 001111259999999885433222111233457889999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCC------------------------CeEEEEEcCCCCE-----------E
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDS------------------------AISSILFGPDETS-----------I  350 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~-----------l  350 (458)
                      + +++++  +.|++||+.+++.+..+..+..                        ....+++++++..           +
T Consensus       160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  236 (349)
T 1jmx_B          160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL  236 (349)
T ss_dssp             C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred             c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence            9 66554  3499999999888777654320                        2345666655421           1


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      .....++.+++|++..                  ....+..++|+| +|++++++  ++.|++||+.+.+....+. ...
T Consensus       237 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~  295 (349)
T 1jmx_B          237 SVDLKTGKTHTQEFAD------------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDH  295 (349)
T ss_dssp             EEETTTCCEEEEEEEE------------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSS
T ss_pred             EEeccCCcEEeccccc------------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCC
Confidence            1223344444444421                  334578899999 99999988  8899999998875443332 334


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+.+++|+|++++|++++.++.|++||++
T Consensus       296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             CccceEECCCCCEEEEecCCCeEEEEecc
Confidence            57899999999988888889999999973

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.1e-23  Score=185.25  Aligned_cols=237  Identities=9%  Similarity=0.047  Sum_probs=171.9

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC-CCCCCccccccCCCceEEEEEecCCCeEEEEEc--CCCcEEE
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-STPASRNATIYCGTEIMSLEWECKSDRLLLIGT--ADGGIKA  218 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~  218 (458)
                      .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++... .........+.+++|+ +++++|++++  .++...+
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-VDTGFATICNNDHGIS-PDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-CCCTTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-eccccccccccceEEC-CCCCEEEEEEeCCCCcceE
Confidence            3446788999999999999999987 78999999988 65432 1112223678899999 6778888887  3345555


Q ss_pred             E--EcCCCceeeeccCCCCCCceeeeeecCCCCeEE-EeecccCCCCcceeeccceeEEEEEC--CCCceeEEeecCCCC
Q 012699          219 W--NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-SAAASRRYGSSNIYSWGFASLTVWNM--KTWKAMTVLPLGEDP  293 (458)
Q Consensus       219 w--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~i~d~--~~~~~~~~~~~~~~~  293 (458)
                      |  +..+++. ..+...   ..+..++|+|+++.++ ++..+             +.+++|++  .+++. ..  +..+.
T Consensus       113 ~~~~~~~~~~-~~~~~~---~~~~~~~~spdg~~l~~~~~~~-------------~~~~l~~~~~~~~~~-~~--~~~~~  172 (297)
T 2ojh_A          113 YLLPSTGGTP-RLMTKN---LPSYWHGWSPDGKSFTYCGIRD-------------QVFDIYSMDIDSGVE-TR--LTHGE  172 (297)
T ss_dssp             EEEETTCCCC-EECCSS---SSEEEEEECTTSSEEEEEEEET-------------TEEEEEEEETTTCCE-EE--CCCSS
T ss_pred             EEEECCCCce-EEeecC---CCccceEECCCCCEEEEEECCC-------------CceEEEEEECCCCcc-eE--cccCC
Confidence            5  4455443 333332   3488899999999887 45444             47888885  34333 22  33556


Q ss_pred             CcEEEEEEccCCCEEEEEe-cCCeEEEEeCC-CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-----------CeEE
Q 012699          294 PAITSLCFNHNGKILAASA-VDGMIHMFDMS-AGLQITGWPAHDSAISSILFGPDETSIFSLGSD-----------GKII  360 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~  360 (458)
                      ..+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+..++|+|++++|++++.+           +.|.
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            7799999999999888766 58899999986 466677788888899999999999999988776           5699


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                      +||+.+.+.....       ....+...+..++|+|+|++|++++.+.
T Consensus       253 ~~d~~~~~~~~~~-------~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          253 LMDMDGGNVETLF-------DLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTSCSCEEEE-------EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEecCCCCceeee-------ccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999876432211       1112445678899999999999887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=4e-22  Score=180.60  Aligned_cols=279  Identities=13%  Similarity=0.116  Sum_probs=180.6

Q ss_pred             CCEEEEEe----CCCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----CcEEEEEcCC--Cce
Q 012699          159 GNNIASAS----VDGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----GGIKAWNVDA--KRV  226 (458)
Q Consensus       159 ~~~l~s~~----~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~--~~~  226 (458)
                      ..+++.|+    .++.|.+|+++.  ++... .... +...+..++|+ +++++|++++.+    +.+.+|++..  ++.
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~-~~~~-~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLP-LSDA-EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEE-EEEE-ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEE-eecc-cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            33455553    457899998754  33322 1222 55667889999 677888888775    7999999876  443


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE----EeecCC--------CCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT----VLPLGE--------DPP  294 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~----~~~~~~--------~~~  294 (458)
                      ...............+++  +++.++++....            +.+.+|++.....+.    .....+        +..
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~------------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~  155 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSG------------GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP  155 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CSSEEEEEETTT------------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC
T ss_pred             EEeeEeccCCCCcEEEEE--CCCEEEEEECCC------------CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC
Confidence            222221112235666777  777777766433            599999997543322    111111        123


Q ss_pred             cEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCce------e-------eeeeCCCCCeEEEEEcCCCCEEEEec-CCCeE
Q 012699          295 AITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQ------I-------TGWPAHDSAISSILFGPDETSIFSLG-SDGKI  359 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  359 (458)
                      .+.+++|+|+|+++++++ .++.|.+|++.....      +       .....+...+..++|+|+|+++++++ .++.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            468899999999776655 478999998875331      1       11223455678999999999887766 68999


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--ccEEEEEccC--CCc-ccccCCCCCcEEEE
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--VRAPIYQVRG--HAS-GMRTLPHGAAITTV  434 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~i~i~~~~~--~~~-~~~~~~h~~~v~~~  434 (458)
                      .+|++.++.... ...   ......+...+..++|+|||++|+++..+  +.|.+|++..  +.. ..........+.++
T Consensus       236 ~v~~~~~g~~~~-~~~---~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~  311 (361)
T 3scy_A          236 IAFRYADGMLDE-IQT---VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNF  311 (361)
T ss_dssp             EEEEEETTEEEE-EEE---EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEE
T ss_pred             EEEEecCCceEE-eEE---EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceE
Confidence            999998543211 111   11112233456899999999999877765  8999999962  221 11111224578899


Q ss_pred             EECCCCCeEEEec-CCCcEEEEeCC
Q 012699          435 DWHPTLPMFLTGS-ADHSVQVMSLS  458 (458)
Q Consensus       435 ~~~~~~~~l~s~~-~dg~v~iw~l~  458 (458)
                      +|+|+|++|++++ .++.|.+|+++
T Consensus       312 ~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          312 IITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEE
Confidence            9999999888776 67899998653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=1.9e-21  Score=176.20  Aligned_cols=269  Identities=13%  Similarity=0.169  Sum_probs=176.6

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCC----CcEEEEecCCC--CCCCccccccCCCceEEEEEecCCCeEEEEE-cCCCcEEE
Q 012699          146 HTSPISCCRFSSSGNNIASASVD----GTVRIWTYDSS--TPASRNATIYCGTEIMSLEWECKSDRLLLIG-TADGGIKA  218 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~  218 (458)
                      |...+..++|+|+|++|++++.+    +.|.+|++...  .................+++   ++++|+++ ..++.+.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence            66778889999999999998876    79999998763  22211111223445666776   45555554 46889999


Q ss_pred             EEcCCCceeeecc------C------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce---
Q 012699          219 WNVDAKRVVCDLN------T------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---  283 (458)
Q Consensus       219 wd~~~~~~~~~~~------~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---  283 (458)
                      |++.....+..+.      .      ......+..++|+|+++.++++....            +.+.+|++.....   
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~v~v~~~~~~~~~~~  192 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT------------DQIHKFNINPNANADN  192 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTCCTTT
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC------------CEEEEEEEcCCCCccc
Confidence            9997644332211      0      01112357899999999776665432            4999998875432   


Q ss_pred             ---e------EEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCce--eeee---eCCCCCeEEEEEcCCCC
Q 012699          284 ---M------TVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQ--ITGW---PAHDSAISSILFGPDET  348 (458)
Q Consensus       284 ---~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~--~~~~---~~~~~~v~~~~~~~~~~  348 (458)
                         +      ..... .....+..++|+|+|+++++++ .++.|.+||+.+++.  +..+   ..+......++|+|+|+
T Consensus       193 ~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~  271 (361)
T 3scy_A          193 KEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK  271 (361)
T ss_dssp             CCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS
T ss_pred             ccceeecccccceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC
Confidence               1      22222 2334578999999999888777 589999999987644  2222   23345578999999999


Q ss_pred             EEEEecC--CCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEcc--CCCccc
Q 012699          349 SIFSLGS--DGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVR--GHASGM  422 (458)
Q Consensus       349 ~l~~~~~--dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~--~~~~~~  422 (458)
                      +|+++..  ++.|.+|++... +........      .. ...+..++|+|||++|++++ .++.+.+|+++  +++...
T Consensus       272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~------~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQ------LT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             EEEEEECSSSCEEEEEEECTTTCCEEEEEEE------EC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEECCCCCCEEEEEEEcCCCCcEEEeeEe------cC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            8876655  489999999622 221111110      01 34567899999999999888 56889997665  332211


Q ss_pred             cc-CCCCCcEEEEEEC
Q 012699          423 RT-LPHGAAITTVDWH  437 (458)
Q Consensus       423 ~~-~~h~~~v~~~~~~  437 (458)
                      .. ..+...+.|+.|.
T Consensus       345 ~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          345 IKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CSCCEECSSEEEEEEE
T ss_pred             cceeeeCCCCeEEEEc
Confidence            11 1244578888885

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.3e-21  Score=176.73  Aligned_cols=245  Identities=11%  Similarity=0.125  Sum_probs=187.8

Q ss_pred             CCceEEEEEecCCCeEEEEEcC-------CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCc
Q 012699          191 GTEIMSLEWECKSDRLLLIGTA-------DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS  263 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      ...+..++|+ ++++++++++.       ++.|.+||..+++....+...   ..+..++++|+++.++.+....     
T Consensus        40 ~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~-----  110 (353)
T 3vgz_A           40 GKGAYEMAYS-QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQTLWFGNTVN-----  110 (353)
T ss_dssp             ESSEEEEEEE-TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTEEEEEETTT-----
T ss_pred             ccCccceEEC-CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCEEEEEecCC-----
Confidence            4567889999 56666666553       568999999999988777654   3477899999999766655433     


Q ss_pred             ceeeccceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCCEEEEEe--cCCeEEEEeCCCCceeeeeeCC
Q 012699          264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGKILAASA--VDGMIHMFDMSAGLQITGWPAH  334 (458)
Q Consensus       264 ~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~  334 (458)
                             +.|.+||..+++....+......       ..+.+++|+|+++++++++  .++.|.+||+.+++.+..+..+
T Consensus       111 -------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          111 -------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             -------TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred             -------CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence                   59999999999988887753321       1378899999999888776  4788999999999988888766


Q ss_pred             CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEE
Q 012699          335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIY  413 (458)
Q Consensus       335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~  413 (458)
                      ...+.+++|+|+++++++++.++.|.+||+.+.+.......     ....+...+..++|+|+|+++++++.+ +.|.+|
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  258 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL-----LDDGKEHFFINISLDTARQRAFITDSKAAEVLVV  258 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC-----CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred             CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc-----CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence            67788999999999999999999999999987654432211     111234567889999999988877764 899999


Q ss_pred             EccCCCcccccCCCCCcEEEEEECCCCCeEE-EecCCCcEEEEeCC
Q 012699          414 QVRGHASGMRTLPHGAAITTVDWHPTLPMFL-TGSADHSVQVMSLS  458 (458)
Q Consensus       414 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~l~  458 (458)
                      |..+.+....+....  ...++|+|++++++ +...++.|.+||+.
T Consensus       259 d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          259 DTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             ETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            998876544443222  25799999999554 55579999999973

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.7e-22  Score=200.15  Aligned_cols=292  Identities=11%  Similarity=-0.006  Sum_probs=193.6

Q ss_pred             CeEEEEeCCCCCEEEEEeC---------CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          149 PISCCRFSSSGNNIASASV---------DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      .|.+++|||||++|++++.         +++|++||+.+++......   ....+..++|+ ++++.|+.+. ++.|++|
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---l~~~~~~~~~S-PDG~~la~~~-~~~i~~~  135 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---LPRPIQYLCWS-PVGSKLAYVY-QNNIYLK  135 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CCSSBCCEEEC-SSTTCEEEEE-TTEEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee---cCcccccceEC-CCCCEEEEEE-CCeEEEE
Confidence            4889999999999998876         7899999998876521011   12468889999 6777777775 7899999


Q ss_pred             EcCCCceeeeccCCCCCC-----------------ceeeeeecCCCCeEEEeecccCCCCcc-e----------------
Q 012699          220 NVDAKRVVCDLNTTDAFP-----------------SVLDLKCSPVEPIFVSAAASRRYGSSN-I----------------  265 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------  265 (458)
                      |+.+++........ +..                 ....+.|+|||+.|++++.+...-... +                
T Consensus       136 ~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y  214 (719)
T 1z68_A          136 QRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY  214 (719)
T ss_dssp             SSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred             eCCCCCcEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence            99988765432221 111                 124899999999999987653210000 0                


Q ss_pred             ----eeccceeEEEEECCCCcee--EEee----cCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEe----CCCCce
Q 012699          266 ----YSWGFASLTVWNMKTWKAM--TVLP----LGEDPPAITSLCFNHNGKILAASAVD----GMIHMFD----MSAGLQ  327 (458)
Q Consensus       266 ----~~~~~g~i~i~d~~~~~~~--~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~  327 (458)
                          .......|++||+.+++..  ..+.    +..+...+..++|+||++++++....    ..|.+||    +.+++.
T Consensus       215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence                0012248999999987653  1111    12466678999999998777664432    2489999    877776


Q ss_pred             eeee----eCCCCCeE-----EEEEcCCCCEEEE--ecCCC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          328 ITGW----PAHDSAIS-----SILFGPDETSIFS--LGSDG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       328 ~~~~----~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      ...+    ..|...+.     .++|+|||+.|+.  ...+|  .|.+||+.+... .      .+   ......+..+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~------~l---t~~~~~v~~~~~  364 (719)
T 1z68_A          295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-I------QI---TSGKWEAINIFR  364 (719)
T ss_dssp             CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-E------EC---SCSSSCEEEEEE
T ss_pred             EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-E------ec---ccCceEEEEEEE
Confidence            6555    46777776     8899999996554  44555  467777765431 1      11   122334667777


Q ss_pred             ccCCCEEEEEeCC-----ccEEEEEccC--CC-ccccc----CCCCCcEEEEEECCCCCeEEE-ecCC--CcEEEEeC
Q 012699          395 DVNGRRLLVTSGS-----VRAPIYQVRG--HA-SGMRT----LPHGAAITTVDWHPTLPMFLT-GSAD--HSVQVMSL  457 (458)
Q Consensus       395 s~~g~~l~~~~~~-----~~i~i~~~~~--~~-~~~~~----~~h~~~v~~~~~~~~~~~l~s-~~~d--g~v~iw~l  457 (458)
                      + +++.|+..+.+     +..++|.+..  +. ....+    .+|...+..+.|+|++++++. ++.+  ..+.+|++
T Consensus       365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence            7 88877776654     7788888764  21 11222    136677889999999997764 4333  45777775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=3.4e-22  Score=180.07  Aligned_cols=250  Identities=13%  Similarity=0.174  Sum_probs=167.0

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASV---DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWN  220 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd  220 (458)
                      .+...+..++|+|+|+ |++++.   ++.|.+|++.+++.........+...+..++|+ +++++|++++ .++.+.+|+
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEE
Confidence            3446677899999999 555544   689999999766533222223345678899999 6677666666 789999999


Q ss_pred             cCC-Cc--eeeeccCCC-------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCceeEE--e
Q 012699          221 VDA-KR--VVCDLNTTD-------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMTV--L  287 (458)
Q Consensus       221 ~~~-~~--~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~~--~  287 (458)
                      +.. +.  .+..+....       ....+..++|+|+++++++...+             +.|.+|++. +++....  +
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-------------~~v~~~~~~~~g~~~~~~~~  181 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-------------DKVYVYNVSDAGQLSEQSVL  181 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-------------TEEEEEEECTTSCEEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-------------CEEEEEEECCCCcEEEeeeE
Confidence            963 22  222222211       11247889999999944444334             499999998 4543322  2


Q ss_pred             ecCCCCCcEEEEEEccCCCEEEE-EecCCeEEEEeCCC--Cce--eeeeeCCC------CCeEEEEEcCCCCEEE-EecC
Q 012699          288 PLGEDPPAITSLCFNHNGKILAA-SAVDGMIHMFDMSA--GLQ--ITGWPAHD------SAISSILFGPDETSIF-SLGS  355 (458)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~l~-~~~~  355 (458)
                      ... ....+..++|+|+|+++++ +..++.|.+|++..  ++.  +..+....      ..+..++|+|+|++|+ +...
T Consensus       182 ~~~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~  260 (347)
T 3hfq_A          182 TME-AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG  260 (347)
T ss_dssp             ECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred             EcC-CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence            222 2235788999999997666 45678999999874  432  22333222      3588999999999874 5556


Q ss_pred             CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEcc
Q 012699          356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVR  416 (458)
Q Consensus       356 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~  416 (458)
                      ++.|.+|++...+.......      ...+...+..++|+|||++|++++.+ +.+.+|+++
T Consensus       261 ~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          261 YNTLAVFAVTADGHLTLIQQ------ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             TTEEEEEEECGGGCEEEEEE------EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEECCCCcEEEeEE------EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            89999999974332221111      11223457889999999999988865 899999664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2e-21  Score=179.28  Aligned_cols=291  Identities=14%  Similarity=0.119  Sum_probs=189.2

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--------C-----CccccccCCCceEEEEEecCCCeEEE----E
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------A-----SRNATIYCGTEIMSLEWECKSDRLLL----I  209 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~-----~~~~~~~~~~~v~~~~~~~~~~~~l~----~  209 (458)
                      ...++.+++++++.++++++.|+ +++|+......        .     .......+...|.+++|+ +++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEec
Confidence            34688999999999999999888 89987532110        0     001122345679999999 6677888    7


Q ss_pred             EcCCCcEEEEEcCCC--------ce---eeeccCCCCCCceeeeeecCC-CCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          210 GTADGGIKAWNVDAK--------RV---VCDLNTTDAFPSVLDLKCSPV-EPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       210 ~~~dg~i~~wd~~~~--------~~---~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      ++.|+.|++||+.++        +.   ...+..  |...|.+++|+|+ +..+++++.|             |.|++||
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~las~s~D-------------g~v~iwD  178 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD--AGGMVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQ  178 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS--GGGSEEEEEECSSCTTEEEEEETT-------------SCEEEEE
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCC--CCCceEEEEECCCCCCEEEEEECC-------------CeEEEEE
Confidence            888999999998765        22   222222  3468999999998 7889999888             5999999


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------CCCeEEEEEcCCCCEE
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------DSAISSILFGPDETSI  350 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l  350 (458)
                      ++++......  ..|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|       ...|.+++|++++.++
T Consensus       179 ~~~~~~~~~~--~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          179 VTETVKVCAT--LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             ESSSEEEEEE--ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             cCCCcceeec--cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence            9988554433  3466789999999999999999999999999998 5555555443       2379999999988776


Q ss_pred             EEec-CCC------eEEEEeccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCC
Q 012699          351 FSLG-SDG------KIIEWSLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHA  419 (458)
Q Consensus       351 ~~~~-~dg------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~  419 (458)
                      ++.+ .||      .+++|++++.+.   ..+...............+...+..-++.+++++++.. +.|.+.......
T Consensus       256 ~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~  335 (434)
T 2oit_A          256 IVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQ  335 (434)
T ss_dssp             EEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTS
T ss_pred             EEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCC
Confidence            5433 343      389999986532   22211111111000111122233344777777776653 344444432210


Q ss_pred             -----------ccccc----CCCCCcEEEEEEC---------------CCCCeEEEecCCCcEEEEeC
Q 012699          420 -----------SGMRT----LPHGAAITTVDWH---------------PTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       420 -----------~~~~~----~~h~~~v~~~~~~---------------~~~~~l~s~~~dg~v~iw~l  457 (458)
                                 ....+    .+....+..+++.               |-...|..-+.||.+..|.+
T Consensus       336 ~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~  403 (434)
T 2oit_A          336 INWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYM  403 (434)
T ss_dssp             SCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEE
T ss_pred             CccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEE
Confidence                       00111    1123334444442               12357888889999999975

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=5.9e-23  Score=203.44  Aligned_cols=274  Identities=9%  Similarity=0.063  Sum_probs=189.7

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC----CceEEEEEecCCCeEEEEEcC---------CCcEEE
Q 012699          152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG----TEIMSLEWECKSDRLLLIGTA---------DGGIKA  218 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------dg~i~~  218 (458)
                      .++|+|+|+++++ +.|++|++||+.+++...   ...+.    ..+.+++|+ +++++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEE---EEccccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEE
Confidence            6799999965554 569999999999887542   11111    138899999 78888888765         689999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE--
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI--  296 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i--  296 (458)
                      ||+.+++.+......   ..+..++|+|+|+.++.+..              +.|++||+.+++..... ..++...+  
T Consensus        95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~~--------------~~i~~~~~~~g~~~~l~-~~~~~~~v~~  156 (719)
T 1z68_A           95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVYQ--------------NNIYLKQRPGDPPFQIT-FNGRENKIFN  156 (719)
T ss_dssp             EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEET--------------TEEEEESSTTSCCEECC-CCCBTTTEEE
T ss_pred             EECCCCccccceecC---cccccceECCCCCEEEEEEC--------------CeEEEEeCCCCCcEEEe-cCCCcCCeEc
Confidence            999998863211111   45888999999999998864              39999999987765432 22332222  


Q ss_pred             ---------------EEEEEccCCCEEEEEecCC----------------------------------eEEEEeCCCCce
Q 012699          297 ---------------TSLCFNHNGKILAASAVDG----------------------------------MIHMFDMSAGLQ  327 (458)
Q Consensus       297 ---------------~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~  327 (458)
                                     .+++|+|||++|++++.|.                                  .|++||+.+++.
T Consensus       157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~  236 (719)
T 1z68_A          157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY  236 (719)
T ss_dssp             SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred             ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence                           4899999999999987652                                  789999988764


Q ss_pred             e--------eeeeCCCCCeEEEEEcCCCCEEEEecCC----CeEEEEe----ccCCCeeEEeecCCcccC--CCCCCCce
Q 012699          328 I--------TGWPAHDSAISSILFGPDETSIFSLGSD----GKIIEWS----LQNQGQVLWTRNCSRFCD--PESSKSCR  389 (458)
Q Consensus       328 ~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~--~~~~~~~v  389 (458)
                      .        ..+.+|...+..++|+||++++++....    ..|.+||    +.+++..       ....  ...+...+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-------~~~~~~~~~~~~~~  309 (719)
T 1z68_A          237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-------KTQEHIEESRTGWA  309 (719)
T ss_dssp             HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-------GGGEEEEECSSSCS
T ss_pred             cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-------EEEecccccCCceE
Confidence            3        2234678889999999998777764322    2488888    6543211       1110  01233334


Q ss_pred             e-----EEEEccCCCEEEE--EeCCc--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC-----CCcEEEE
Q 012699          390 H-----EMALDVNGRRLLV--TSGSV--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA-----DHSVQVM  455 (458)
Q Consensus       390 ~-----~~~~s~~g~~l~~--~~~~~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~v~iw  455 (458)
                      .     .++|+|||+.|+.  ...++  .|++|++.+.. ...+..+...+..+.++ +++.|+..+.     ++.+++|
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~  387 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY  387 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence            4     7899999997665  33444  57777877654 34455566678888777 7776665554     4889999


Q ss_pred             eC
Q 012699          456 SL  457 (458)
Q Consensus       456 ~l  457 (458)
                      .+
T Consensus       388 ~~  389 (719)
T 1z68_A          388 RI  389 (719)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=3.7e-21  Score=174.28  Aligned_cols=288  Identities=9%  Similarity=0.079  Sum_probs=181.6

Q ss_pred             EEEEeCC--CcEEEEecC--CCCCCCccccc--cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC-CCceeeeccCCC
Q 012699          162 IASASVD--GTVRIWTYD--SSTPASRNATI--YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD-AKRVVCDLNTTD  234 (458)
Q Consensus       162 l~s~~~d--g~v~iwd~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~  234 (458)
                      ++.|+..  +.|.+|+++  +++... ....  .....+..++|+ +++++|++++.+ .|.+|++. +++.........
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~-~~~~~~~~~~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKL-IKRTEIPQDEPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEE-EEEEECCTTCCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEE-eeEEccCCCCCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            4445432  457777654  332211 1111  123467889999 678888888877 99999997 776654332111


Q ss_pred             CCCceeeeeecCCCCe--EEEeecccCCCCcceeec----cceeEEEEECC-CCceeEEeec--CCCCCcEEEEEEccCC
Q 012699          235 AFPSVLDLKCSPVEPI--FVSAAASRRYGSSNIYSW----GFASLTVWNMK-TWKAMTVLPL--GEDPPAITSLCFNHNG  305 (458)
Q Consensus       235 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~g~i~i~d~~-~~~~~~~~~~--~~~~~~i~~~~~~~~~  305 (458)
                      . ..+..++++|+++.  ++++...    ....+..    .+|.+.+|++. +++....+..  ..+...+.+++|+|+|
T Consensus        82 ~-g~~~~~~~spdg~~l~~~~~~~~----~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           82 G-GHPRANDADTNTRAIFLLAAKQP----PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             C-SSGGGGCTTSCCEEEEEEECSST----TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             C-CCCccEEECCCCCEEEEEEecCC----cceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            1 23567999999995  3444300    0000110    23699999997 4555443321  1233568999999999


Q ss_pred             CEEEEEec-CCeEEEEeCC-CCcee--eeee--CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC--CCeeEEeecC
Q 012699          306 KILAASAV-DGMIHMFDMS-AGLQI--TGWP--AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQN--QGQVLWTRNC  376 (458)
Q Consensus       306 ~~l~~~~~-dg~i~v~d~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~  376 (458)
                      ++|+++.. ++.|++||+. +++..  ..+.  .|...+..++|+|+|+++++++. ++.|.+|++..  +.........
T Consensus       157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence            98887764 6799999998 66543  3333  24567899999999999887764 78999998763  3221100000


Q ss_pred             CcccCC-CCCCC------ceeEEE-EccCCCEEEEEeCC-c-----cEEEEEccCCCcccc----cCCCCCcEEEEEECC
Q 012699          377 SRFCDP-ESSKS------CRHEMA-LDVNGRRLLVTSGS-V-----RAPIYQVRGHASGMR----TLPHGAAITTVDWHP  438 (458)
Q Consensus       377 ~~~~~~-~~~~~------~v~~~~-~s~~g~~l~~~~~~-~-----~i~i~~~~~~~~~~~----~~~h~~~v~~~~~~~  438 (458)
                      ...... ..+..      .+..++ |+|||++|++++.+ +     .|.+|++.....+..    ...+...+..++|+|
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            011100 11121      578899 99999999887653 3     899999963222222    223445677899999


Q ss_pred             ---CCCeEEEecCC-CcEEEEeC
Q 012699          439 ---TLPMFLTGSAD-HSVQVMSL  457 (458)
Q Consensus       439 ---~~~~l~s~~~d-g~v~iw~l  457 (458)
                         ||++|++++.+ +.|++|++
T Consensus       317 ~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          317 CPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCcCCCEEEEEEcCCCeEEEEEE
Confidence               89999988764 89999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.89  E-value=7.6e-22  Score=180.71  Aligned_cols=305  Identities=10%  Similarity=0.034  Sum_probs=196.5

Q ss_pred             eeeeeccCCCCeEE-----EEeCCCCCEEEEEeC-CCc--EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE
Q 012699          139 FLETFLGHTSPISC-----CRFSSSGNNIASASV-DGT--VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG  210 (458)
Q Consensus       139 ~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  210 (458)
                      .+..+..|......     .+|+|||++|+.++. ++.  |.+||+.+++...  ....+...+..+.|+ ++++.|+.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~s-pdg~~l~~~   98 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--LTEGRGDNTFGGFLS-PDDDALFYV   98 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE--CCCSSCBCSSSCEEC-TTSSEEEEE
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE--eeeCCCCCccceEEc-CCCCEEEEE
Confidence            34456666655555     889999999998887 674  7788887766432  222233334467899 788889998


Q ss_pred             cCCCcEEEEEcCCCceeeeccCCCCCCcee--eeeecCCCCeEEEeecccCCCCc---------ceeeccceeEEEEECC
Q 012699          211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVL--DLKCSPVEPIFVSAAASRRYGSS---------NIYSWGFASLTVWNMK  279 (458)
Q Consensus       211 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~i~i~d~~  279 (458)
                      ..++.|++||+.+++.......+.  ..+.  ...++|++..++....+......         .......+.|.+||+.
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             eCCCeEEEEECCCCcceeeeechh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            888999999999988766555443  2232  23458999988754322110000         0011223689999999


Q ss_pred             CCceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecC------CeEEEEeCCCCceeeeeeCCC--CCeEEEEEcCCCCEE
Q 012699          280 TWKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVD------GMIHMFDMSAGLQITGWPAHD--SAISSILFGPDETSI  350 (458)
Q Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l  350 (458)
                      +++......   +...+..++|+| +|+.|+....+      ..|.++|+..++. ..+..+.  ..+..++|+|||+.|
T Consensus       177 ~g~~~~l~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          177 TGESTVILQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             TCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCE
T ss_pred             CCceEEeec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEE
Confidence            987665543   335689999999 99988877653      3788888776544 3343343  357889999999987


Q ss_pred             EEecC-C----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE---------eCCccEEEEEcc
Q 012699          351 FSLGS-D----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT---------SGSVRAPIYQVR  416 (458)
Q Consensus       351 ~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---------~~~~~i~i~~~~  416 (458)
                      +..+. +    ..|++||+.+++........ ...   .........+|+|||+.|+..         ..+..|++||+.
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENRQLTSMP-ACS---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEEEEEEEC-CEE---EEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred             EEEecCCCCCcceEEEEecCCCceEEEEcCC-Cce---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence            65443 2    23999999876542211100 000   000001224799999988865         445689999998


Q ss_pred             CCCcccccCCCCC-----------cEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699          417 GHASGMRTLPHGA-----------AITTVDWHPTLPMFLTGS-ADHSVQVMSL  457 (458)
Q Consensus       417 ~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~~-~dg~v~iw~l  457 (458)
                      +++. ..+..|..           .+.+++|+|||+.|+.++ .+|...||.+
T Consensus       329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            8643 34444444           578899999999777554 5787777764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=5.3e-21  Score=172.38  Aligned_cols=285  Identities=8%  Similarity=-0.006  Sum_probs=182.4

Q ss_pred             eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCcccee-EeeccCCCcccccccccccCC
Q 012699           28 KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRF-ATNMSGNDSISPSKLEFEDVG  106 (458)
Q Consensus        28 ~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~i~~~~~~~~~~~  106 (458)
                      +++++ ++++.++++++.++++.+||..+++....+..-.   ......+.+++++++ +++...++.+.+|++....  
T Consensus         3 ~g~~~-~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--   76 (349)
T 1jmx_B            3 TGPAL-KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--   76 (349)
T ss_dssp             -CCCC-CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred             ccccc-cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--
Confidence            35678 8999999999999999999998876543222110   001122344445543 4455667888888875422  


Q ss_pred             cccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeecc-C-----CCCeEEEEeCCCCCEEEEEeCC------------
Q 012699          107 AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLG-H-----TSPISCCRFSSSGNNIASASVD------------  168 (458)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~~~~~~~~~~l~s~~~d------------  168 (458)
                                                      .+..+.. +     ...+.+++|+|+|++|++++.+            
T Consensus        77 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  124 (349)
T 1jmx_B           77 --------------------------------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP  124 (349)
T ss_dssp             --------------------------------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             --------------------------------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCC
Confidence                                            1111111 1     2347789999999999998865            


Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC-----------
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP-----------  237 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----------  237 (458)
                      +.|.+||+.+++.............+.+++|+ ++++ +++++.  .|.+||+.+++....+.......           
T Consensus       125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA-DDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             CEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC-TTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             CeEEEEECCCccccceeeeccCCCcccceeEC-CCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence            89999999875443333333445568889999 5666 555543  49999999998776655432000           


Q ss_pred             -----------ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-CC
Q 012699          238 -----------SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-NG  305 (458)
Q Consensus       238 -----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  305 (458)
                                 ....+++.+++.........            ...+..+|..+++.. .+........+..++|+| ++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~dg  267 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADL------------LYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDP  267 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEE------------EEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCT
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCcccccc------------ceeEEEEeccCCcEE-ecccccCCCcceeeEecCCCC
Confidence                       12223333332211100000            012333565554432 222223445688999999 99


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ++++++  ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+..
T Consensus       268 ~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          268 NQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             TEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence            999988  88999999999988777764 345779999999999988888999999999876543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=2.8e-20  Score=184.28  Aligned_cols=290  Identities=9%  Similarity=-0.013  Sum_probs=179.3

Q ss_pred             EEEEeCCCCCEEEEEeCC---------CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          151 SCCRFSSSGNNIASASVD---------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      ..++|||||++|+.++.+         +.+.+||+.+++...   ...+...+...+|+ |+++.|+.+ .++.|++|++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~~~~~~~~~~~S-PdG~~la~~-~~~~i~~~~~  139 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIE  139 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---cccCCCcceeeEEC-CCCCEEEEE-ECCeEEEEEC
Confidence            458899999999998876         566799999887542   23345678999999 677777776 4689999999


Q ss_pred             CCCceeeeccCCCCCC-----------------ceeeeeecCCCCeEEEeecccCCCCcc-e------------------
Q 012699          222 DAKRVVCDLNTTDAFP-----------------SVLDLKCSPVEPIFVSAAASRRYGSSN-I------------------  265 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------  265 (458)
                      .+++...... .....                 ....+.|+|||+.|+....+...-... +                  
T Consensus       140 ~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y  218 (740)
T 4a5s_A          140 PNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (740)
T ss_dssp             TTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence            9887544222 11111                 123588999999999887654311100 0                  


Q ss_pred             --e--eccceeEEEEECCC---Cce--eEEeecC----CCCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCc--
Q 012699          266 --Y--SWGFASLTVWNMKT---WKA--MTVLPLG----EDPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGL--  326 (458)
Q Consensus       266 --~--~~~~g~i~i~d~~~---~~~--~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~--  326 (458)
                        .  ......|.+||+.+   ++.  ...+...    ++...+..++|+|||+.++....    +..|++||+.+++  
T Consensus       219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~  298 (740)
T 4a5s_A          219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR  298 (740)
T ss_dssp             CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred             CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence              0  01123789999998   742  2223211    25667999999999997665533    3479999999887  


Q ss_pred             --e--eeee--eCCCCCeE-----EEEEcCCCCEEE-EecC-CC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          327 --Q--ITGW--PAHDSAIS-----SILFGPDETSIF-SLGS-DG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       327 --~--~~~~--~~~~~~v~-----~~~~~~~~~~l~-~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                        +  +..+  ..|...+.     ..+|+|||+.|+ ..+. +|  .|++||+.......       +.   .....+..
T Consensus       299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-------lT---~g~~~v~~  368 (740)
T 4a5s_A          299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-------IT---KGTWEVIG  368 (740)
T ss_dssp             EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-------SC---CSSSCEEE
T ss_pred             cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-------cc---cCCEEEEE
Confidence              2  2222  45555544     788999999876 5553 44  58888887543221       11   12233444


Q ss_pred             EEEccCCCEEEEEeCC-----c--cEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeEEEecCC---CcEEEEeC
Q 012699          392 MALDVNGRRLLVTSGS-----V--RAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMFLTGSAD---HSVQVMSL  457 (458)
Q Consensus       392 ~~~s~~g~~l~~~~~~-----~--~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~l  457 (458)
                      +. .+|++.|+..+..     +  .|+..++.+......+.    +.......+.|+|++++++.....   ..+.+++.
T Consensus       369 ~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~  447 (740)
T 4a5s_A          369 IE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS  447 (740)
T ss_dssp             EE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred             EE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence            33 2456666554443     3  34444554433211222    234678899999999966643322   24555543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=6.6e-20  Score=166.03  Aligned_cols=253  Identities=14%  Similarity=0.136  Sum_probs=169.9

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC-CCCCCCccccccCCCceEEEEEecCCCeE--EEEEc-----------
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYD-SSTPASRNATIYCGTEIMSLEWECKSDRL--LLIGT-----------  211 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~-----------  211 (458)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++.... ........+..++|+ +++++  ++++.           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecCCCCccEEEC-CCCCEEEEEEecCCcceecccee
Confidence            34567889999999999998887 99999997 5543211 111111235568888 66763  44553           


Q ss_pred             --CCCcEEEEEcC-CCceeeeccC--CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCceeE
Q 012699          212 --ADGGIKAWNVD-AKRVVCDLNT--TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMT  285 (458)
Q Consensus       212 --~dg~i~~wd~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~  285 (458)
                        .+|.+.+|++. .++....+..  ......+..++|+|+++.++++....            +.|.+||+. +++...
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~------------~~v~~~~~~~~g~~~~  182 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA------------NKLWTHRKLASGEVEL  182 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTSCEEE
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC------------CEEEEEEECCCCCEEE
Confidence              68999999997 4554433321  11225688999999999887765422            499999998 666543


Q ss_pred             --EeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCC--CCcee---e---eeeC----CCC------CeEEEE-E
Q 012699          286 --VLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMS--AGLQI---T---GWPA----HDS------AISSIL-F  343 (458)
Q Consensus       286 --~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~---~---~~~~----~~~------~v~~~~-~  343 (458)
                        .+....+...+..++|+|+|+++++++. ++.|.+|++.  +++..   .   .+..    |..      .+..++ |
T Consensus       183 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  262 (365)
T 1jof_A          183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence              2332223456899999999999988775 6899999765  45432   1   2221    122      488999 9


Q ss_pred             cCCCCEEEEecCC-C-----eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc---CCCEEEEEeCC-ccEEEE
Q 012699          344 GPDETSIFSLGSD-G-----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV---NGRRLLVTSGS-VRAPIY  413 (458)
Q Consensus       344 ~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~-~~i~i~  413 (458)
                      +|||++|+++..+ +     .|.+|++...+........  .   ......+..++|+|   ||++|++++.+ +.|.+|
T Consensus       263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~--~---~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL--S---PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE--E---ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee--e---ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            9999998876643 2     8999999633333211000  0   01223356789999   89999999875 899999


Q ss_pred             EccCC
Q 012699          414 QVRGH  418 (458)
Q Consensus       414 ~~~~~  418 (458)
                      +++..
T Consensus       338 ~~~~~  342 (365)
T 1jof_A          338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEchh
Confidence            99765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=4.5e-20  Score=170.26  Aligned_cols=223  Identities=11%  Similarity=0.132  Sum_probs=158.8

Q ss_pred             CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce----------eeecc---CCCC
Q 012699          169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV----------VCDLN---TTDA  235 (458)
Q Consensus       169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----------~~~~~---~~~~  235 (458)
                      +.+++|+....         .....+..++++ +++.++++++.++ +++|+......          .....   ....
T Consensus        23 ~~vri~~~~~~---------~~~~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (434)
T 2oit_A           23 KKVRIFDSPEE---------LPKERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM   91 (434)
T ss_dssp             CEEECSCCCSS---------CCCSCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC
T ss_pred             eeEEecCCccc---------cCCCCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccC
Confidence            46888764311         112346788898 6677888888887 88987532110          00000   0112


Q ss_pred             CCceeeeeecCCCCeEE----EeecccCCCCcceeeccceeEEEEECCCC--------ceeEEe-ecCCCCCcEEEEEEc
Q 012699          236 FPSVLDLKCSPVEPIFV----SAAASRRYGSSNIYSWGFASLTVWNMKTW--------KAMTVL-PLGEDPPAITSLCFN  302 (458)
Q Consensus       236 ~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--------~~~~~~-~~~~~~~~i~~~~~~  302 (458)
                      ...+.+++|+|++++++    +++.+             +.|++||+++.        +....+ .+.+|...|.+++|+
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  158 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYG-------------SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN  158 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTE-------------EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCC-------------ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC
Confidence            24699999999999999    56666             69999998764        222222 235677889999999


Q ss_pred             cC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          303 HN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       303 ~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      |+ +.+|++++.||.|++||++++..+....+|...|.+++|+|+|++|++++.||.|++||++ ....... .... ..
T Consensus       159 p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~-~~~~-~~  235 (434)
T 2oit_A          159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI-PCPP-FY  235 (434)
T ss_dssp             SSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE-CCCT-TC
T ss_pred             CCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc-cCCc-cc
Confidence            97 8899999999999999999987777777889999999999999999999999999999998 3322211 1111 01


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEe-CCc------cEEEEEccCC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTS-GSV------RAPIYQVRGH  418 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~-~~~------~i~i~~~~~~  418 (458)
                      ...+...+.+++|++++.++++.+ .+|      .+++|++...
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            112345799999999998886543 343      3899999765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=9.7e-20  Score=180.42  Aligned_cols=281  Identities=8%  Similarity=0.071  Sum_probs=184.1

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC-----CceEEEEEecCCCeEEEEEcCC---------
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-----TEIMSLEWECKSDRLLLIGTAD---------  213 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d---------  213 (458)
                      ....++.|+|||++++++  |++|++||+.+++....  ...+.     .....+.|+ +++++|+.++.+         
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE--ECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE--EechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccc
Confidence            346689999999999886  89999999998875321  11111     123457889 778888888765         


Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +.+.+||+.+++... +..  +...+...+|+|+|+.++.+..              +.|++||+.+++... ++..++.
T Consensus        92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~~--------------~~i~~~~~~~~~~~~-lt~~g~~  153 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVWN--------------NDIYVKIEPNLPSYR-ITWTGKE  153 (740)
T ss_dssp             EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEET--------------TEEEEESSTTSCCEE-CCSCCBT
T ss_pred             eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEEC--------------CeEEEEECCCCceEE-EcCCCCc
Confidence            567799999988653 332  2257899999999999998864              399999998877543 3333333


Q ss_pred             CcE-----------------EEEEEccCCCEEEEEecCC------------------------------------eEEEE
Q 012699          294 PAI-----------------TSLCFNHNGKILAASAVDG------------------------------------MIHMF  320 (458)
Q Consensus       294 ~~i-----------------~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~  320 (458)
                      ..+                 ..+.|||||++|+.++.|.                                    .|++|
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            323                 3489999999999875331                                    58889


Q ss_pred             eCCC---Cc--eeeeee------CCCCCeEEEEEcCCCCEEEEec----CCCeEEEEeccCCCeeEEeecCCcccC--CC
Q 012699          321 DMSA---GL--QITGWP------AHDSAISSILFGPDETSIFSLG----SDGKIIEWSLQNQGQVLWTRNCSRFCD--PE  383 (458)
Q Consensus       321 d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~  383 (458)
                      |+.+   ++  ....+.      +|...+..++|+|||+.++...    .+..|.+||+.+++....   |.....  ..
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~  310 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEM  310 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEE
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeec
Confidence            9988   63  223333      3777899999999998666543    244799999987651000   000000  01


Q ss_pred             CCCCce-----eEEEEccCCCEEE-EEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE-EecC----C
Q 012699          384 SSKSCR-----HEMALDVNGRRLL-VTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL-TGSA----D  449 (458)
Q Consensus       384 ~~~~~v-----~~~~~s~~g~~l~-~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~----d  449 (458)
                      .+...+     ...+|+|||+.|+ ..+..   ..|++|++.++.. ..+......|..+.+ +|++.|+ ++..    .
T Consensus       311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~  388 (740)
T 4a5s_A          311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMP  388 (740)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCT
T ss_pred             cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCC
Confidence            222222     3678999999887 66543   4688888887643 344444556666543 4455444 4444    2


Q ss_pred             CcEEEEe
Q 012699          450 HSVQVMS  456 (458)
Q Consensus       450 g~v~iw~  456 (458)
                      +...||.
T Consensus       389 ~~~~ly~  395 (740)
T 4a5s_A          389 GGRNLYK  395 (740)
T ss_dssp             TCBEEEE
T ss_pred             ceeEEEE
Confidence            4455554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=1.9e-20  Score=171.85  Aligned_cols=279  Identities=6%  Similarity=-0.035  Sum_probs=180.2

Q ss_pred             CeEEEEeCCCCCEEEEEeCC---CcEEEEecCCCCCCCccccccCCCc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          149 PISCCRFSSSGNNIASASVD---GTVRIWTYDSSTPASRNATIYCGTE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .+..++|+|||++|+.....   ..|.+||+.+++...   ....... ...+.|+ ++++.|+.++.++.|.+||+.++
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---LTEGKGDNTFGGFIS-TDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---CCCSSCBCTTTCEEC-TTSSEEEEEETTTEEEEEETTTC
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---eecCCCCccccceEC-CCCCEEEEEEcCCcEEEEECCCC
Confidence            37788999999998776543   368888887765432   1122222 2236788 77888888888889999999988


Q ss_pred             ceeeeccCCCCCCceee-------------------eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          225 RVVCDLNTTDAFPSVLD-------------------LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                      +.......+..  ....                   +.++|+++.++.....        .......|.+||+.+++...
T Consensus       113 ~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--------~~~~~~~l~~~d~~~g~~~~  182 (396)
T 3c5m_A          113 EEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY--------HTNPTCRLIKVDIETGELEV  182 (396)
T ss_dssp             CEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH--------HTCCCEEEEEEETTTCCEEE
T ss_pred             CcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeec--------cCCCcceEEEEECCCCcEEe
Confidence            76544443321  1111                   2344554443332200        00123589999999887665


Q ss_pred             EeecCCCCCcEEEEEEcc-CCCEEEEEecC------CeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCC-
Q 012699          286 VLPLGEDPPAITSLCFNH-NGKILAASAVD------GMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSD-  356 (458)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-  356 (458)
                      ...   +...+..+.|+| +++.|+..+.+      ..|.+||+..++........ ...+..++|+|+|++|+..+.+ 
T Consensus       183 ~~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          183 IHQ---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             EEE---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             ecc---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence            543   345689999999 78877766543      36889998765533322211 2357889999999988777554 


Q ss_pred             ----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEe----------------CCccEEEEEc
Q 012699          357 ----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTS----------------GSVRAPIYQV  415 (458)
Q Consensus       357 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~----------------~~~~i~i~~~  415 (458)
                          +.|++||+.++...... ..         .. .. +.|+| ||+++++++                .+..|++||+
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l~-~~---------~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEEVM-VM---------PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT  327 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEEEE-EC---------CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred             CCccceEEEEECCCCCeEEee-eC---------CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence                45999999876432211 10         01 22 88999 999888754                3468999999


Q ss_pred             cCCCcccccCCCCC-----------cEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699          416 RGHASGMRTLPHGA-----------AITTVDWHPTLPMFLTGS-ADHSVQVMSL  457 (458)
Q Consensus       416 ~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~~-~dg~v~iw~l  457 (458)
                      .++.. ..+..+..           .+..++|+|+|+.|+.++ .++...||.+
T Consensus       328 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          328 KAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             TTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            87643 33444443           256789999999877665 4566666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=1.7e-18  Score=169.84  Aligned_cols=304  Identities=11%  Similarity=-0.025  Sum_probs=191.1

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEE--eCCCcEEEEecCCCCCCCccccccCCCceE---------EEEEec-CCCeE-EE
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASA--SVDGTVRIWTYDSSTPASRNATIYCGTEIM---------SLEWEC-KSDRL-LL  208 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~-~~~~~-l~  208 (458)
                      .+.+|...+..++|++++-++++.  +.++...||....+....  ....+...+.         ...|+. ++++. |+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE--ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc--eeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            466899999999999887666776  568899999864332211  1222333334         455662 55555 55


Q ss_pred             EEc-CCCcEEEEEcC--C-CceeeeccCCC---CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-
Q 012699          209 IGT-ADGGIKAWNVD--A-KRVVCDLNTTD---AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-  280 (458)
Q Consensus       209 ~~~-~dg~i~~wd~~--~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-  280 (458)
                      .+. .+..|.++++.  + +.. ..+....   +...+..++|+|+++.+++++.+.....   .......|++||+.+ 
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~---~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG---PSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS---TTCEEEEEEEEETTST
T ss_pred             EEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC---CCCceeEEEEEECCCC
Confidence            544 36677777776  3 433 3333311   2356789999999999998876521000   001124899999988 


Q ss_pred             -----CceeEEeecCCCCCcEEEEEEccCCCEEEEEecC--------CeEEEEeCC-CC---ceeeeeeCCCCCeEEEEE
Q 012699          281 -----WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD--------GMIHMFDMS-AG---LQITGWPAHDSAISSILF  343 (458)
Q Consensus       281 -----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~---~~~~~~~~~~~~v~~~~~  343 (458)
                           ++... +. ..+...+..++|+|||++|+.++.+        ..|++||+. ++   +.......|...+..++|
T Consensus       172 ~~~~~~~~~~-l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~  249 (662)
T 3azo_A          172 AAADRSAVRE-LS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW  249 (662)
T ss_dssp             TTTCGGGSEE-SS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred             ccccCCceeE-EE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence                 54432 21 0334568889999999999987755        379999998 56   444444456788999999


Q ss_pred             cCCCCEEEEecCCC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc--cCCC
Q 012699          344 GPDETSIFSLGSDG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV--RGHA  419 (458)
Q Consensus       344 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~--~~~~  419 (458)
                      +|||+++++++.++  .|.+||+.++.. ..................+..++|+|+++++++++. +.++||.+  .++ 
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-  326 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-  326 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCce-eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-
Confidence            99999888888888  566666644332 211110000000001112457899999999999998 99899944  444 


Q ss_pred             cccccCCCCCcEEEE-EECCCCCeEEEecCCCcEEEEe
Q 012699          420 SGMRTLPHGAAITTV-DWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       420 ~~~~~~~h~~~v~~~-~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ....+..|...+..+ +++++.-++++++.+....||.
T Consensus       327 ~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          327 ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence            345555677778777 5544433555566665555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.84  E-value=3.5e-17  Score=142.91  Aligned_cols=247  Identities=9%  Similarity=0.089  Sum_probs=176.5

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc----ccCCCceEEEEEecCCCeEEEEEcC-CCcEEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT----IYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAW  219 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~w  219 (458)
                      +|-..+.+++++|+++++++...++.|.+||... +.......    ..+...+..+++.++++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            5567789999999999888888899999999763 32211111    0122467889996467776666643 7899999


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      | .+++....+... ....+..+++.|++.++++...+             +.|.+||.. ++....+....+...+..+
T Consensus       106 d-~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~-g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A          106 N-QYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKV-------------MRVIIFDQN-GNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             C-TTSCEEEEECTT-TCSCEEEEEECTTSCEEEEETTT-------------TEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             C-CCCcEEEEecCc-cCCCceEEEEeCCCCEEEEECCC-------------CEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence            9 556666555432 22468899999999877766554             489999964 4555555433444568999


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCCCCEEEEecCCC-eEEEEeccCCCeeEEeecC
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDETSIFSLGSDG-KIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~  376 (458)
                      +++|+|+++++...++.|++||.. ++.+..+..+  ...+..++++|+|+++++...++ .|.+||... +....... 
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~-  246 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALES-  246 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEE-
T ss_pred             EECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcc-
Confidence            999999877777778999999974 5666666443  35789999999999888887776 999999643 22221111 


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                            ......+..++++|+|+++++ +.+++|++|++...
T Consensus       247 ------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          247 ------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence                  112234778999999986666 67899999998654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=1.6e-18  Score=156.15  Aligned_cols=276  Identities=11%  Similarity=0.069  Sum_probs=188.2

Q ss_pred             CCCEEEEEe------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEEEc
Q 012699          158 SGNNIASAS------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAWNV  221 (458)
Q Consensus       158 ~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~  221 (458)
                      ++++++...      .|++|.+||..+++...   ....+... .++|+ +++++++++.          .++.|.+||.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~---~i~~g~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLG---MVPTAFNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEE---EEECCEEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEE---EecCCCCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            555655543      47899999998876543   22223333 89999 6777777775          3567999999


Q ss_pred             CCCceeeeccCCCC----CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEE-eecCCCCCc
Q 012699          222 DAKRVVCDLNTTDA----FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGEDPPA  295 (458)
Q Consensus       222 ~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~  295 (458)
                      .+++.+..+.....    ......++++|++++++++... .            +.|.+||+.+++.+.. +...+    
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~------------~~v~v~d~~~~~~~~~~i~~~~----  152 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA------------TSIGIVDVAKGDYVEDVTAAAG----  152 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS------------EEEEEEETTTTEEEEEEGGGTT----
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC------------CeEEEEECCCCcEEEEEecCCC----
Confidence            99988877654321    1346789999999999887643 2            5999999999988777 54322    


Q ss_pred             EEEEEEccCC-CEEEEEecCCeEEEEeCCC-Cceee------eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          296 ITSLCFNHNG-KILAASAVDGMIHMFDMSA-GLQIT------GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       296 i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      ...+.+.|++ ..+++.+.||.+.+|++.. ++...      .+..+..++ .+.++|++..++..+.++.+.++|+...
T Consensus       153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred             cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC
Confidence            2335677765 6778888899999999865 54441      222223332 3344677878887888999999999754


Q ss_pred             CeeEEe-ecCCc--ccCCCCCCCceeEEEEccCCCEEEEEeC-----------CccEEEEEccCCCcccccCCCCCcEEE
Q 012699          368 GQVLWT-RNCSR--FCDPESSKSCRHEMALDVNGRRLLVTSG-----------SVRAPIYQVRGHASGMRTLPHGAAITT  433 (458)
Q Consensus       368 ~~~~~~-~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----------~~~i~i~~~~~~~~~~~~~~h~~~v~~  433 (458)
                      ...... .....  .............++|+|+++.++++..           .+.|.+||+.+.+.+..+..+.  +.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~  309 (361)
T 2oiz_A          232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALS  309 (361)
T ss_dssp             SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred             CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeE
Confidence            322111 00000  0000000111223789999998887754           3589999999987776666665  999


Q ss_pred             EEECCCCCeEEEecCCCcEEEEeCC
Q 012699          434 VDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       434 ~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|+|||++|++++. +.|.+||+.
T Consensus       310 ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          310 MTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEEETTTTEEEEECS-SCEEEEECS
T ss_pred             EEECCCCCEEEEeCC-CeEEEEECC
Confidence            999999999998887 999999963

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=1.2e-17  Score=148.67  Aligned_cols=250  Identities=11%  Similarity=0.083  Sum_probs=179.5

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCC------------------------CcEEEEecCCCCCCCccccccCCCceEEEEEecC
Q 012699          147 TSPISCCRFSSSGNNIASASVD------------------------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK  202 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  202 (458)
                      -+.+.+++++|+|+++++...+                        ++|.+||..+++.... .....-..+..++++ +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d-~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSID-T  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEEC-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEEC-C
Confidence            4678999999999988888777                        4799999887765421 111223467899999 6


Q ss_pred             CCeEEEEEcCCCcEEEEEcCCCc-eeeeccC-------CCCCCceeeeeecC-CCCeEEEee-cccCCCCcceeecccee
Q 012699          203 SDRLLLIGTADGGIKAWNVDAKR-VVCDLNT-------TDAFPSVLDLKCSP-VEPIFVSAA-ASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       203 ~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~g~  272 (458)
                      +++++++...++.|++||..... .+..+..       ..+...+..++++| ++.++++.+ .+             +.
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~-------------~~  167 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN-------------SR  167 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC-------------CE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC-------------Ce
Confidence            77788888889999999986552 3333321       22234688999999 777777765 34             49


Q ss_pred             EEEEECCCCceeEEeecCC--------CCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEE
Q 012699          273 LTVWNMKTWKAMTVLPLGE--------DPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSI  341 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~  341 (458)
                      |++|| .+++....+...+        +......++++|+ +.++++...++.|++||..+++.+..+.  .+...+.++
T Consensus       168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            99999 5566666553211        1234789999998 6677777778999999999888888774  456688999


Q ss_pred             EEcC------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          342 LFGP------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       342 ~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      +|+|      +++.+++...+..|++||..+++......      ....+...+..++++|+|.++++...+++|++|++
T Consensus       247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            9999      33333333445689999998765443221      11234556899999999988888888999999998


Q ss_pred             cCC
Q 012699          416 RGH  418 (458)
Q Consensus       416 ~~~  418 (458)
                      ...
T Consensus       321 ~~~  323 (329)
T 3fvz_A          321 TEK  323 (329)
T ss_dssp             EEC
T ss_pred             Ccc
Confidence            764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=2.9e-17  Score=143.46  Aligned_cols=239  Identities=11%  Similarity=0.123  Sum_probs=172.4

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC----CCCCceeeeee-cCCCCeEEEeec-ccCCCCcce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT----DAFPSVLDLKC-SPVEPIFVSAAA-SRRYGSSNI  265 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~v~~~~~-~~~~~~~~~~~~-~~~~~~~~~  265 (458)
                      ..+.+++++ +++.++++...++.|.+||.. ++....+...    .+...+..+++ .+++.++++... +        
T Consensus        30 ~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~--------   99 (286)
T 1q7f_A           30 TEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT--------   99 (286)
T ss_dssp             SCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG--------
T ss_pred             CCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC--------
Confidence            457889998 667888888889999999987 5555544321    12246788999 567766666533 3        


Q ss_pred             eeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEE
Q 012699          266 YSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILF  343 (458)
Q Consensus       266 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~  343 (458)
                           +.|.+|| .+++....+.. .+...+..++++|+|+++++...++.|.+||.. ++.+..+.  .+...+..+++
T Consensus       100 -----~~i~~~d-~~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A          100 -----HQIQIYN-QYGQFVRKFGA-TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             -----CEEEEEC-TTSCEEEEECT-TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred             -----CEEEEEC-CCCcEEEEecC-ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence                 4999999 56666666542 233568999999999988877778999999964 56665554  34557899999


Q ss_pred             cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEEccCCCccc
Q 012699          344 GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQVRGHASGM  422 (458)
Q Consensus       344 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~~~~~~~~~  422 (458)
                      +|+++++++.+.++.|++||... .... ...      .......+..++++|+|+++++...++ .|.+|+..+. .+.
T Consensus       172 ~~~g~l~v~~~~~~~i~~~~~~g-~~~~-~~~------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~  242 (286)
T 1q7f_A          172 NDKQEIFISDNRAHCVKVFNYEG-QYLR-QIG------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LIS  242 (286)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETTC-CEEE-EES------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEE
T ss_pred             CCCCCEEEEECCCCEEEEEcCCC-CEEE-EEc------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEE
Confidence            99998888888899999999753 2221 111      111234678999999999888887776 9999997543 333


Q ss_pred             ccCCC--CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          423 RTLPH--GAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       423 ~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+..+  ...+.+++++|+|+++++ +.|+.|++|++.
T Consensus       243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            33322  235789999999987777 569999999863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=1.1e-17  Score=148.98  Aligned_cols=244  Identities=11%  Similarity=0.108  Sum_probs=177.4

Q ss_pred             CCceEEEEEecCCCeEEEEEcCC------------------------CcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699          191 GTEIMSLEWECKSDRLLLIGTAD------------------------GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP  246 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (458)
                      -..+.+++++ ++++++++...+                        +.|.+||..+++....+.. .....+..++++|
T Consensus        23 l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCSSEEEEEECT
T ss_pred             cCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccCCceEEEECC
Confidence            3568899998 667777777766                        4799999998887765542 2335688999999


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeec-------CCCCCcEEEEEEcc-CCCEEEEEe-cCCe
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPL-------GEDPPAITSLCFNH-NGKILAASA-VDGM  316 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~l~~~~-~dg~  316 (458)
                      ++.++++...+             +.|++||..... .+..+..       ..+......++++| ++.++++.+ .++.
T Consensus       101 ~g~l~v~d~~~-------------~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A          101 DGNYWVTDVAL-------------HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TSCEEEEETTT-------------TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CCCEEEEECCC-------------CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            99977776655             499999986542 3444321       23334689999999 788878776 6899


Q ss_pred             EEEEeCCCCceeeeeeCC----------CCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          317 IHMFDMSAGLQITGWPAH----------DSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      |++|| .+++.+..+...          -.....++++|+ +.++++...++.|++||..+++.....       .....
T Consensus       168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-------~~~~~  239 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-------KHASF  239 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-------CCTTT
T ss_pred             EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-------ecccc
Confidence            99999 557776666422          234889999998 777777788999999999855433221       11134


Q ss_pred             CCceeEEEEcc------CCCEEEEEeCCccEEEEEccCCCccccc---CCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          386 KSCRHEMALDV------NGRRLLVTSGSVRAPIYQVRGHASGMRT---LPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       386 ~~~v~~~~~s~------~g~~l~~~~~~~~i~i~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ...+..++++|      +|+..++...+.++++|+..+++....+   .++...+.+++++|+|.++++...++.|++|+
T Consensus       240 ~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            45678899999      3333333334558999999887655544   25667899999999999888989999999998


Q ss_pred             C
Q 012699          457 L  457 (458)
Q Consensus       457 l  457 (458)
                      +
T Consensus       320 ~  320 (329)
T 3fvz_A          320 L  320 (329)
T ss_dssp             E
T ss_pred             C
Confidence            6

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.82  E-value=3.3e-17  Score=154.81  Aligned_cols=339  Identities=11%  Similarity=0.042  Sum_probs=225.6

Q ss_pred             cCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceee
Q 012699           34 QTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQM  113 (458)
Q Consensus        34 s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~  113 (458)
                      .+.+.++++...++++.++|..+++....+..- ..+    ..+.++++++++++++.++.+.++|+.....   .    
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p----~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~----  231 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAV----HISRLSASGRYLFVIGRDGKVNMIDLWMKEP---T----  231 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCE----EEEEECTTSCEEEEEETTSEEEEEETTSSSC---C----
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCc----cceEECCCCCEEEEEcCCCeEEEEECCCCCC---c----
Confidence            455678888899999999999988766544321 111    1356677788888888899999999741110   0    


Q ss_pred             eccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC----CCCCEEEEEeC-CCcEEEEecCCCCCCCccccc
Q 012699          114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS----SSGNNIASASV-DGTVRIWTYDSSTPASRNATI  188 (458)
Q Consensus       114 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~  188 (458)
                                               .+..+.... ....++|+    |||++++++.. +++|.++|..+.+.+......
T Consensus       232 -------------------------~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~  285 (567)
T 1qks_A          232 -------------------------TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR  285 (567)
T ss_dssp             -------------------------EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred             -------------------------EeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence                                     222232222 35689999    69999877654 589999998887765432221


Q ss_pred             c--------C-CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC
Q 012699          189 Y--------C-GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR  259 (458)
Q Consensus       189 ~--------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  259 (458)
                      .        + ...+..+..++....+++....+|.|.++|....+........ ......++.|+|++++++++.... 
T Consensus       286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~s-  363 (567)
T 1qks_A          286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANAR-  363 (567)
T ss_dssp             EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGG-
T ss_pred             ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCC-
Confidence            1        1 2257778888666777777788899999998875432221111 113567889999999988776543 


Q ss_pred             CCCcceeeccceeEEEEECCCCceeEEeec-C--CCCCcEEEEEEccCCCEE-EEEe-cCCeEEEEeCCC-------Cce
Q 012699          260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPL-G--EDPPAITSLCFNHNGKIL-AASA-VDGMIHMFDMSA-------GLQ  327 (458)
Q Consensus       260 ~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l-~~~~-~dg~i~v~d~~~-------~~~  327 (458)
                                 +.|.++|+.+++....+.. .  .|++.-..+ ++|++..+ +++. .++.|.++|..+       .+.
T Consensus       364 -----------n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv  431 (567)
T 1qks_A          364 -----------NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI  431 (567)
T ss_dssp             -----------TEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred             -----------CeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence                       5999999999998877765 3  233222222 68875544 4443 468999999987       567


Q ss_pred             eeeeeCCCCCeEEEEEcCCCCEEEEecC-------CCeEEEEeccCC-----CeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          328 ITGWPAHDSAISSILFGPDETSIFSLGS-------DGKIIEWSLQNQ-----GQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       328 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      ++++......-..+..+|+++++++...       .+.|.++|+.+.     .....................+..+.|+
T Consensus       432 v~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (567)
T 1qks_A          432 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN  511 (567)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC
T ss_pred             EEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeEC
Confidence            7777755444345788999999988663       458999999876     2211111100000111234568899999


Q ss_pred             cCCCEEEEEeC-----CccEEEEEccCCCccccc
Q 012699          396 VNGRRLLVTSG-----SVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       396 ~~g~~l~~~~~-----~~~i~i~~~~~~~~~~~~  424 (458)
                      |+|+.+.++..     ++.|.++|..+.+....+
T Consensus       512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  545 (567)
T 1qks_A          512 KDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  545 (567)
T ss_dssp             TTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence            99999887743     689999999988654443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1e-17  Score=150.78  Aligned_cols=267  Identities=12%  Similarity=0.082  Sum_probs=179.5

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCcccccc----CCCceEEEEEecCCCeEE
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATIY----CGTEIMSLEWECKSDRLL  207 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l  207 (458)
                      .+..+..+  .++|+||+++++++.          .+++|.+||..+.+.........    .......++++ +++++|
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l  122 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFI  122 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC-CCCCEE
Confidence            34444455  899999999998886          36789999998776543222111    23456788999 677778


Q ss_pred             EEEcC--CCcEEEEEcCCCceeee-ccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCC-Cc
Q 012699          208 LIGTA--DGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WK  282 (458)
Q Consensus       208 ~~~~~--dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~  282 (458)
                      +++..  ++.|.+||+.+++.+.. +....    ...+.+.|++ ..+++.+.+             |.+.+|+... ++
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~d-------------g~~~~v~~~~~g~  185 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGD-------------GGLLTINLGEDGK  185 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETT-------------SSEEEEEECTTSS
T ss_pred             EEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCC-------------CcEEEEEECCCCc
Confidence            77753  68999999999988877 65432    2334566665 455555555             5788887754 44


Q ss_pred             eeEEee----cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeCC----------CCCeEEEEEcCC
Q 012699          283 AMTVLP----LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPAH----------DSAISSILFGPD  346 (458)
Q Consensus       283 ~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~----------~~~v~~~~~~~~  346 (458)
                      ......    +.....+ ..+.++|++..++..+.++.++++|+.....  ...+...          ......++|+|+
T Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             EEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             EeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            332211    1111111 2334467777777788899999999875432  1221110          011223789999


Q ss_pred             CCEEEEecC-----------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          347 ETSIFSLGS-----------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       347 ~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ++.++++..           .+.|.+||+.+.+......         .+ . +..++|+|||++|++++. +.|.+||.
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---------~~-~-p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP---------GR-D-ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE---------CT-T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe---------cC-C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            888776543           3489999999875443221         11 2 789999999999998887 99999999


Q ss_pred             cCC--CcccccCCCCCcEEEEEECCCCC
Q 012699          416 RGH--ASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       416 ~~~--~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      .++  +.+..+..+......++++|+|+
T Consensus       333 ~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          333 SQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            998  66666567778899999999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=3.5e-18  Score=167.66  Aligned_cols=242  Identities=14%  Similarity=0.095  Sum_probs=151.6

Q ss_pred             CCCCCE-EEEEeC-CCcEEEEecC--C-CCCCCcccccc---CCCceEEEEEecCCCeEEEEEcCC----------CcEE
Q 012699          156 SSSGNN-IASASV-DGTVRIWTYD--S-STPASRNATIY---CGTEIMSLEWECKSDRLLLIGTAD----------GGIK  217 (458)
Q Consensus       156 ~~~~~~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~  217 (458)
                      ||||+. |+.++. +..|.++++.  + +... ......   +...+..++|+ ++++.|++++.+          ..|+
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEE
Confidence            499988 776553 4566666665  2 3322 111111   34568899999 677778877766          5899


Q ss_pred             EEEcCC------Cceeeecc-CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCc--eeEEe
Q 012699          218 AWNVDA------KRVVCDLN-TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWK--AMTVL  287 (458)
Q Consensus       218 ~wd~~~------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~--~~~~~  287 (458)
                      +||+.+      ++... +. ..  ...+..++|+|+|+.++..+.+....     ......|.+||+. +++  ....+
T Consensus       165 ~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~-----~~~~~~i~~~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          165 AVPLDGSAAADRSAVRE-LSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRM-----PWEGTELKTARVTEDGRFADTRTL  236 (662)
T ss_dssp             EEETTSTTTTCGGGSEE-SSCSC--SSEECCCEECTTSSEEEEEEECTTCC-----TTTCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCccccCCceeE-EEecC--CCcccCceECCCCCEEEEEECCCCCC-----CCCCcEEEEEEECCCCcccccEEe
Confidence            999988      55433 32 22  25678899999999998877553110     0112489999999 562  22223


Q ss_pred             ecCCCCCcEEEEEEccCCCEEEEEecCC--eEEEEeCCCCceeeeeeCCCCC--------eEEEEEcCCCCEEEEecCCC
Q 012699          288 PLGEDPPAITSLCFNHNGKILAASAVDG--MIHMFDMSAGLQITGWPAHDSA--------ISSILFGPDETSIFSLGSDG  357 (458)
Q Consensus       288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg  357 (458)
                      . ..+...+..++|+|||++++++..++  .|++||+.+++.......+...        +..++|+|+++++++++. +
T Consensus       237 ~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          237 L-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             E-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             C-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            2 23346789999999999888888788  6777787666654443333222        567899999999999998 9


Q ss_pred             eEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE--EEeCCc--cEEEEEccCCC
Q 012699          358 KIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL--VTSGSV--RAPIYQVRGHA  419 (458)
Q Consensus       358 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~~~~--~i~i~~~~~~~  419 (458)
                      .+++|.+... +....      +   ..+...+..+ ++++++.++  .++.+.  .++++++.+++
T Consensus       315 ~~~l~~~d~~~~~~~~------l---~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          315 AAVLGILDPESGELVD------A---AGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SCEEEEEETTTTEEEE------C---CSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ccEEEEEECCCCcEEE------e---cCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            9999955422 22211      1   1223445555 145554433  334443  46666665553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=5.6e-18  Score=151.49  Aligned_cols=282  Identities=13%  Similarity=0.130  Sum_probs=186.5

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      ..|.++.|++++..++..+.++.++.|.-   +..  .....+...+.+++|+ +++++++++..++.|.+||..+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPW--LEISKKGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEE--EEEESSCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecCCccceeEEeecccCccccc---cee--EEEeccCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            45778889998877777778888998822   111  1122344567899999 67777788888999999999988765


Q ss_pred             eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      ......  ...+..++++|++.++++...+..         ..+.|.+||..++.....+........+..++++|+|++
T Consensus        80 ~~~~~~--~~~~~~i~~~~dg~l~v~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l  148 (333)
T 2dg1_A           80 RPFVSH--KANPAAIKIHKDGRLFVCYLGDFK---------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF  148 (333)
T ss_dssp             EEEECS--SSSEEEEEECTTSCEEEEECTTSS---------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE
T ss_pred             EEeeCC--CCCcceEEECCCCcEEEEeCCCCC---------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE
Confidence            443222  256899999999988777654310         013899999988766544332223456899999999987


Q ss_pred             EEEEec------CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          308 LAASAV------DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       308 l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      +++...      .+.|..+|..+++... +..+...+..++|+|+++.|+ +.+.++.|.+||+.+..............
T Consensus       149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~  227 (333)
T 2dg1_A          149 YFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY  227 (333)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence            776553      3567777766554432 223344578999999998654 44568899999996432211100000000


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC------CcEEEEEECCCCCeEEEecCC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG------AAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      .... ...+..++++++|+++++...++.|.+|+.++. ....+..+.      ..+.+++|+|+++.|+.++.+
T Consensus       228 ~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          228 YFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             ecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            0011 145788999999998888778899999998543 332322222      268999999998766655444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=5.6e-18  Score=154.92  Aligned_cols=298  Identities=11%  Similarity=0.025  Sum_probs=181.8

Q ss_pred             hhccccCCCcceee-----eeeccCCCceeeeeec-Ccc--eEEeccccccccccceeeeeccCCceeeeeCCccceeEe
Q 012699           16 QLSRLKNNSETIKY-----ANIGQTKNSTLASGVN-EES--LLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFAT   87 (458)
Q Consensus        16 ~~~~l~~h~~~i~~-----~~~~s~~~~~l~s~~~-d~~--~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (458)
                      .+.+|..|......     .+| +|||++|+.++. ++.  +.+|+...+........    +........++++++.|+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~----~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCF-TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG----RGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCB-CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS----SCBCSSSCEECTTSSEEE
T ss_pred             ceEEecCCcccccchhhcCccC-CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC----CCCCccceEEcCCCCEEE
Confidence            45677777766655     889 999999998887 664  77777776654311110    000011123444566666


Q ss_pred             eccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE--EeCCCCCEEEEE
Q 012699           88 NMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC--RFSSSGNNIASA  165 (458)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~  165 (458)
                      ..+.++.+.+|++....                                  ....+..+...+...  .++|++++++..
T Consensus        97 ~~~~~~~l~~~d~~~g~----------------------------------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~  142 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLE----------------------------------ENVVYQVPAEWVGYGTWVANSDCTKLVGI  142 (388)
T ss_dssp             EEETTTEEEEEETTTCC----------------------------------EEEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred             EEeCCCeEEEEECCCCc----------------------------------ceeeeechhhcccccceeECCCCCeeccc
Confidence            66667778888765422                                  111122333333333  347788777642


Q ss_pred             ----------------------eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC------CcEE
Q 012699          166 ----------------------SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD------GGIK  217 (458)
Q Consensus       166 ----------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~  217 (458)
                                            ..+..|.+||+.+++..   ....+...+..+.|+|.+++.|+....+      ..|.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~  219 (388)
T 3pe7_A          143 EIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW  219 (388)
T ss_dssp             EEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred             cccCcccccccccchhhhhhccCCcceEEEEECCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence                                  23467999999887643   2234456688999994277777766553      3788


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc--
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA--  295 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~--  295 (458)
                      ++|..++.... +........+..+.|+|+++.++..+.....        ....|.+||+.+++.........+...  
T Consensus       220 ~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~l~~~d~~~g~~~~l~~~~~~~~~~~  290 (388)
T 3pe7_A          220 LINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLKGS--------PDRFIYSADPETLENRQLTSMPACSHLMS  290 (388)
T ss_dssp             EEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEETTC--------CCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred             EEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCCCC--------CcceEEEEecCCCceEEEEcCCCceeeee
Confidence            88887665433 3222211257788999999988665543210        012599999999876554333321000  


Q ss_pred             -EEEEEEccCCCEEEEE---------ecCCeEEEEeCCCCceeeeeeCCCC-----------CeEEEEEcCCCCEEEEec
Q 012699          296 -ITSLCFNHNGKILAAS---------AVDGMIHMFDMSAGLQITGWPAHDS-----------AISSILFGPDETSIFSLG  354 (458)
Q Consensus       296 -i~~~~~~~~~~~l~~~---------~~dg~i~v~d~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~  354 (458)
                       ...++|+|+|+.|+..         ..+..|++||+.+++. ..+..+..           .+.+++|+|||+.|+..+
T Consensus       291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             CTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence             1113699999988754         4466899999988764 44555555           578899999999887665


Q ss_pred             -CCCeEEEEecc
Q 012699          355 -SDGKIIEWSLQ  365 (458)
Q Consensus       355 -~dg~i~iwd~~  365 (458)
                       .++...+|.+.
T Consensus       370 ~~~g~~~l~~~~  381 (388)
T 3pe7_A          370 DVHGKPALYLAT  381 (388)
T ss_dssp             CTTSSCEEEEEE
T ss_pred             cCCCceeEEEEE
Confidence             46776677654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.81  E-value=7.1e-16  Score=145.78  Aligned_cols=284  Identities=13%  Similarity=0.133  Sum_probs=194.0

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecC--CCCCCCccccccCCCceEEEEEec---CCCeEEEEEc-CCCcEEEEEcC
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYD--SSTPASRNATIYCGTEIMSLEWEC---KSDRLLLIGT-ADGGIKAWNVD  222 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~-~dg~i~~wd~~  222 (458)
                      .+..+.|+|||+++++++.|+.|.+||+.  +.+..   .....+.....++|++   +++++++++. .++.+.++|..
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v---~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe---EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            46689999999999999999999999995  44433   2334455678999995   4676666655 46899999999


Q ss_pred             CCceeeeccCCC---------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          223 AKRVVCDLNTTD---------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       223 ~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +.+.+..+....         ....+..+..++++..++....+.            |.|.++|..+.+........ ..
T Consensus       275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~------------g~v~~vd~~~~~~~~v~~i~-~~  341 (567)
T 1qks_A          275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET------------GKILLVDYTDLNNLKTTEIS-AE  341 (567)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEETTCSSEEEEEEEE-CC
T ss_pred             CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC------------CeEEEEecCCCccceeeeee-cc
Confidence            999887765431         012567788888877666555443            69999999876544333222 22


Q ss_pred             CcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeC-----CCCCeEEEEEcCCCCEE-EEec-CCCeEEEEecc
Q 012699          294 PAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPA-----HDSAISSILFGPDETSI-FSLG-SDGKIIEWSLQ  365 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l-~~~~-~dg~i~iwd~~  365 (458)
                      .....+.|+|++++++++. .++.|.++|+.+++.+..+..     |.+.-..+ ++|++..+ +++. .++.|.++|..
T Consensus       342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence            3477899999999987766 478999999999988776654     33222222 57875444 4443 46899999998


Q ss_pred             CCCe------eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-------CccEEEEEccCC-----CcccccC--
Q 012699          366 NQGQ------VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-------SVRAPIYQVRGH-----ASGMRTL--  425 (458)
Q Consensus       366 ~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~~i~i~~~~~~-----~~~~~~~--  425 (458)
                      +.+.      ......        ........+..+|++++|.+...       .++|.++|+.+.     .......  
T Consensus       421 ~~~~~~~~~kvv~~i~--------~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~  492 (567)
T 1qks_A          421 PEGHPDNAWKILDSFP--------ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI  492 (567)
T ss_dssp             TTTCTTTBTSEEEEEE--------CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred             CCCCccccCEEEEEEe--------cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc
Confidence            6321      111111        11122244778999999998773       358999999876     2221111  


Q ss_pred             -------CCCCcEEEEEECCCCCeEEEec-----CCCcEEEEeC
Q 012699          426 -------PHGAAITTVDWHPTLPMFLTGS-----ADHSVQVMSL  457 (458)
Q Consensus       426 -------~h~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~l  457 (458)
                             .....+..+.|+|+|+.+..+.     .++.|.|+|.
T Consensus       493 ~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          493 AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             HHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             ccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence                   1245789999999999655542     3789999884

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=1.7e-18  Score=158.78  Aligned_cols=250  Identities=8%  Similarity=-0.060  Sum_probs=150.1

Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-------------------EEEecCCCeEEEEE--
Q 012699          152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-------------------LEWECKSDRLLLIG--  210 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~--  210 (458)
                      .+.|+|||++|+.++.++.|.+||+.+++....  ...+......                   +.|+ ++++.++..  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~  161 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEF  161 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEE--EecccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeee
Confidence            368999999999998888999999887654321  1111111111                   2334 333333332  


Q ss_pred             ---cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          211 ---TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       211 ---~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                         ..+..|.+||+.+++.......   ...+..+.|+| ++..++....+...       .....|.+||+..++....
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~-------~~~~~l~~~d~~~~~~~~l  231 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHD-------LVDARMWLVNEDGSNVRKI  231 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSS-------SCSCCCEEEETTSCCCEES
T ss_pred             ccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCC-------CCCceEEEEECCCCceeEe
Confidence               3556899999998876554422   24688899999 78877666532100       0012788899876554332


Q ss_pred             eecCCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEec------
Q 012699          287 LPLGEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLG------  354 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------  354 (458)
                      .. ......+..++|+|+|++|+.++.+     +.|++||+.+++....... .. .. +.|+| +|+++++++      
T Consensus       232 ~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          232 KE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             SC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC---
T ss_pred             ec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCccee
Confidence            22 1112357889999999988777654     4599999988765433222 12 33 89999 999888754      


Q ss_pred             ----------CCCeEEEEeccCCCeeEEeecCCcccC-CCCCCCceeEEEEccCCCEEEEEeC-Ccc--EEEEEccCC
Q 012699          355 ----------SDGKIIEWSLQNQGQVLWTRNCSRFCD-PESSKSCRHEMALDVNGRRLLVTSG-SVR--APIYQVRGH  418 (458)
Q Consensus       355 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-~~~--i~i~~~~~~  418 (458)
                                .+..|++||+.++.............. .......+..++|+|||+.|+.++. ++.  ++.+++.+.
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             eccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                      347899999986543221111000000 0000112456789999999887775 444  444454444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.80  E-value=3e-15  Score=131.48  Aligned_cols=283  Identities=9%  Similarity=0.031  Sum_probs=195.0

Q ss_pred             eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      +..+...+.++++.++|+++++...++.|.+||.. +... ..........+..++++ +++.++++...++.|..||..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCC
Confidence            44566789999999999988777668899999987 4322 11111234678899998 677777777778899999986


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                       ++. ..+........+..+++.+++.++++...+             +.|..||. +++... +........+..++++
T Consensus        87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNG-------------NRIGRITD-DGKIRE-YELPNKGSYPSFITLG  149 (299)
T ss_dssp             -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTT-------------TEEEEECT-TCCEEE-EECSSTTCCEEEEEEC
T ss_pred             -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCC-------------ceEEEECC-CCCEEE-ecCCCCCCCCceEEEc
Confidence             332 222222223568899999999877766544             48999998 544433 3233334568999999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      ++|++.++...++.|..||. +++.... ...+...+.+++++++++++++...++.|.+||. +.......        
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~--------  219 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK--------  219 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE--------
T ss_pred             CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE--------
Confidence            99987777766789999998 6654432 3334557889999999987777777889999998 44322110        


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .......+..++++++|+++++...++.|..|+..+.........+...+.++++ ++++++++... +.+..++.
T Consensus       220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~~~  293 (299)
T 2z2n_A          220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAMEC-DKIGKLTL  293 (299)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEETT-TEEEEEEE
T ss_pred             CCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEecC-CcEEEEEc
Confidence            1123456889999999997666657788999998432111112245567999999 99887776654 45555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=3.3e-17  Score=147.40  Aligned_cols=270  Identities=10%  Similarity=0.071  Sum_probs=176.2

Q ss_pred             CCeEEEEeCCCCCEEEEEe---------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---C-
Q 012699          148 SPISCCRFSSSGNNIASAS---------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---G-  214 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-  214 (458)
                      ..+..+++  ||++++...         .++.|.+||+.+++...    .   ..+..+.|+ ++++.|+..+.+   + 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----l---~~~~~~~~S-pDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF----I---ENATMPRIS-PDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE----E---ESCEEEEEC-TTSSEEEEEEEETTTTE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE----c---ccCCCeEEC-CCCCEEEEEEeccCCCc
Confidence            34666777  888876642         25679999998775421    1   457889999 677777766543   3 


Q ss_pred             -cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC--------------cceeeccceeEEEEECC
Q 012699          215 -GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS--------------SNIYSWGFASLTVWNMK  279 (458)
Q Consensus       215 -~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~g~i~i~d~~  279 (458)
                       .|.+||+.+++........   . +..+.|+|+++.++..+.+.....              ..........|.+||+.
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~  160 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE  160 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred             ceEEEEECCCCceEEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence             4888888887765443332   3 889999999998888764310000              00000113589999999


Q ss_pred             CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-------eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE
Q 012699          280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-------MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS  352 (458)
Q Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  352 (458)
                      +++....+..   . .+..++|+|+| +++++..++       ...+|.+.+++ ...+..+ ..+..+  +|+|++|+.
T Consensus       161 ~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~  231 (347)
T 2gop_A          161 SEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILL  231 (347)
T ss_dssp             TTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEE
T ss_pred             CCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEE
Confidence            8877444443   2 57889999999 777775542       33444433444 3344444 555554  999998887


Q ss_pred             ecCC--------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE-EEEccCCCEEEEEeCCccEEEEEccCCCcccc
Q 012699          353 LGSD--------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE-MALDVNGRRLLVTSGSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       353 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~  423 (458)
                      ++.+        ..|.+||  ++ .....        ...+...+.. +.|+ ++ ++++++.++.++|| +.++ ....
T Consensus       232 ~~~~~~~~~~~~~~l~~~d--~~-~~~~l--------~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~~~  296 (347)
T 2gop_A          232 YGKPEKKYMSEHNKLYIYD--GK-EVMGI--------LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EIKP  296 (347)
T ss_dssp             EECCSSSCCCSSCEEEEEC--SS-CEEES--------STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-SEEE
T ss_pred             EEccccCCccccceEEEEC--CC-ceEec--------cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ceEE
Confidence            7654        3677887  32 22111        1123456775 8999 88 88888999999999 8743 3444


Q ss_pred             cCCCCCcEEEEEECCCCCeEEEecCCCcE-EEEeC
Q 012699          424 TLPHGAAITTVDWHPTLPMFLTGSADHSV-QVMSL  457 (458)
Q Consensus       424 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v-~iw~l  457 (458)
                      +..+...|.+++|+|  .++++++.++.. .||.+
T Consensus       297 ~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          297 IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            556678899999999  677777777665 77765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=3.9e-16  Score=138.72  Aligned_cols=261  Identities=10%  Similarity=0.019  Sum_probs=184.0

Q ss_pred             CCCcEEEEecCCCCCCCcccc----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699          167 VDGTVRIWTYDSSTPASRNAT----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDL  242 (458)
Q Consensus       167 ~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~  242 (458)
                      .+++|.++|..+++.......    ...+.....+.+.  ++.++++...++.|.+||..+++.+.++...   .....+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEE
Confidence            478999999988765432211    1122345777775  5667777777899999999999998877432   568889


Q ss_pred             eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC---CCcEEEEEEccCCCEEEEEe--cCCeE
Q 012699          243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED---PPAITSLCFNHNGKILAASA--VDGMI  317 (458)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~--~dg~i  317 (458)
                      ++++++..+++...+             +.|.+||+.+++....+.....   ......+++ . +..++++.  .++.|
T Consensus        90 ~~~~~g~lyv~~~~~-------------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWD-------------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI  154 (328)
T ss_dssp             EEEETTEEEEEEBSC-------------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred             EEeCCCeEEEEECCC-------------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence            998888554444343             5999999999988877765430   013455666 3 44555554  48899


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC----------CeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD----------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      .++|+.+++.+..+... .....++++|+|++++++..+          +.|.++|..+.+..... ..       ....
T Consensus       155 ~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~~-------~~g~  225 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-KF-------KLGD  225 (328)
T ss_dssp             EEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-EC-------CTTC
T ss_pred             EEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-ec-------CCCC
Confidence            99999999888877653 345689999999877776655          78999999876433211 10       1123


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc-cCC-CCCcEEEEEECC-CCCeEEEe----cCCCcEEEEeCC
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR-TLP-HGAAITTVDWHP-TLPMFLTG----SADHSVQVMSLS  458 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-~~~-h~~~v~~~~~~~-~~~~l~s~----~~dg~v~iw~l~  458 (458)
                      .+..++++|++++|+++..  .|.+||..+.+.... +.. +...+..++++| ++.++++.    ..++.|.+||.+
T Consensus       226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            5789999999999988766  899999987754322 122 246789999999 55566665    578899999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1.7e-15  Score=135.30  Aligned_cols=251  Identities=10%  Similarity=0.108  Sum_probs=167.6

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----C
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----G  214 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g  214 (458)
                      ....+..+...+.+++|+|++++++++..++.|.+||..+++...  ........+.+++++ ++++++++...+    +
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTG  112 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEEC-TTSCEEEEECTTSSSCC
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE--EeeCCCCCcceEEEC-CCCcEEEEeCCCCCCCc
Confidence            445566777788999999999988888889999999988765432  111345678999999 667777776666    6


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .|.+||.+++.....+........+..+.++|++.++++......       ....+.|..+|..+++......   ...
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~---~~~  182 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-------TNPLGGVYYVSPDFRTVTPIIQ---NIS  182 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-------TBCCEEEEEECTTSCCEEEEEE---EES
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc-------cCCCceEEEEeCCCCEEEEeec---CCC
Confidence            899999988776533322222356889999999988776653210       0011467777776555443322   123


Q ss_pred             cEEEEEEccCCCEEEEE-ecCCeEEEEeCCC-Cceeee--------eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          295 AITSLCFNHNGKILAAS-AVDGMIHMFDMSA-GLQITG--------WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      .+..++|+|+++.|+++ +.++.|++||+.+ +..+..        +.++ ..+..++++++|+++++...++.|.+||.
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            47889999999866554 4578999999864 333221        1222 46788999999998887777889999998


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      . .+..... ....  ....+...+..++|+||++.|++++.+
T Consensus       262 ~-g~~~~~~-~~~~--~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          262 R-GYPIGQI-LIPG--RDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             T-SCEEEEE-ECTT--GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             C-CCEEEEE-EcCC--CccccccCcceEEECCCCCEEEEEeCc
Confidence            4 3322211 1000  001122257889999998888776665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.75  E-value=4.2e-14  Score=124.14  Aligned_cols=281  Identities=8%  Similarity=-0.008  Sum_probs=192.7

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .....+.++++.++|+..++...++.|.+||.. ++... .........+..+++. +++.++++...++.|..||.. +
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-C
Confidence            445678999999999988877778999999977 43321 1111223568899998 667777777778899999988 5


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      +.. .+........+..+++.+++.++++....             +.|..+|.. ++.. .+........+..++++++
T Consensus        93 ~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           93 GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNG-------------DRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             CEE-EEECSSTTCCEEEEEECSTTCEEEEETTT-------------TEEEEECTT-SCEE-EEECSSTTCCEEEEEECTT
T ss_pred             CeE-EecCCCCCCCCccceECCCCCEEEEccCC-------------CeEEEECCC-CCEE-EccCCCCCCCceeEEECCC
Confidence            543 22222222568899999999877766544             489999987 5544 3333333456899999999


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      +++.++...++.|..+|. +++.... ...+...+..+++.++++..++....+.|.+|+. ++...... .       .
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~-------~  226 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-I-------P  226 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-C-------S
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-C-------C
Confidence            996666666788999998 5554332 2234457899999999987777777788999998 33222111 0       1


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .....+..++++++|+++++...++.|..++..+.............+.+++++++|+++++.. . .|..++.
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            2234578999999999776666678999999843222122223446789999999998666655 4 6666654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.75  E-value=1.2e-15  Score=150.38  Aligned_cols=255  Identities=11%  Similarity=0.049  Sum_probs=170.3

Q ss_pred             ceEEEEEecCCCeEEEEEcCC-C----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC---cc
Q 012699          193 EIMSLEWECKSDRLLLIGTAD-G----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS---SN  264 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~d-g----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~  264 (458)
                      .+..++|+ +++++|+.+..+ |    .|++||+.+++........   ..+..++|+||++.|+.+..+.....   ..
T Consensus       126 ~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          126 ALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             EEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             EEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            57889999 677777765543 3    8999999999876532221   23567999999999998876642100   00


Q ss_pred             eeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEec-----CCeEEEEeCCC------Cc-eeee
Q 012699          265 IYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAV-----DGMIHMFDMSA------GL-QITG  330 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~------~~-~~~~  330 (458)
                      -.......|++|++.+++..  ..+....+...+..+.|+|||++|+..+.     +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence            00011135999999887643  33333334556889999999999988765     56899999986      43 4566


Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEecCC----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          331 WPAHDSAISSILFGPDETSIFSLGSD----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      +..+...+.. .|+|+|+.|+..+.+    +.|.+||+.+.....+.    .+. .......+..++|++++.++++...
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~----~l~-~~~~~~~~~~~~~~~~~~lv~~~~~  355 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK----VLV-PEHEKDVLEWVACVRSNFLVLCYLH  355 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE----EEE-CCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce----ecc-CCCCCCeEEEEEEEcCCEEEEEEEE
Confidence            6667666655 488999887766553    36999999875321000    010 0111135778899988888888888


Q ss_pred             Ccc--EEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe----cCCCcEEEEeC
Q 012699          407 SVR--APIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG----SADHSVQVMSL  457 (458)
Q Consensus       407 ~~~--i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~v~iw~l  457 (458)
                      ++.  |++|++.+++....+..+.+.+..++++|+++.|+..    ...+.|++||+
T Consensus       356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            874  6667775554444555567889999999999755522    24578999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=2.9e-15  Score=129.52  Aligned_cols=238  Identities=8%  Similarity=0.074  Sum_probs=166.8

Q ss_pred             ceEEEEEecCCCeEEE-EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          193 EIMSLEWECKSDRLLL-IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ...+++++ +++++++ +...++.|.+||..++......  ......+..+++.+++.++++.. +             +
T Consensus        25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~-~-------------~   87 (270)
T 1rwi_B           25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDGAGTVYVTDF-N-------------N   87 (270)
T ss_dssp             CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECC--CCSCCSCCCEEECTTCCEEEEET-T-------------T
T ss_pred             CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCCcceeEECCCCCEEEEcC-C-------------C
Confidence            67889998 5667666 4467889999998765533221  11224578899999998666654 3             4


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      .|.+||....... .+.. .....+..++++|+|+++++...++.|.+|+..+.............+.+++++|++++++
T Consensus        88 ~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v  165 (270)
T 1rwi_B           88 RVVTLAAGSNNQT-VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV  165 (270)
T ss_dssp             EEEEECTTCSCCE-ECCC-CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEE
T ss_pred             EEEEEeCCCceEe-eeec-CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEE
Confidence            9999998765432 2221 2224689999999998777777788999998765544332223334678899999999777


Q ss_pred             EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE
Q 012699          352 SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI  431 (458)
Q Consensus       352 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v  431 (458)
                      +...++.|.+||.........         .......+..++++++|.++++...++.|.+|+..+.........+...+
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p  236 (270)
T 1rwi_B          166 TDTDNNRVVKLEAESNNQVVL---------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP  236 (270)
T ss_dssp             EEGGGTEEEEECTTTCCEEEC---------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCE
T ss_pred             EECCCCEEEEEecCCCceEee---------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCc
Confidence            777788999999876533221         01122567899999999777777778899999997754332222344678


Q ss_pred             EEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          432 TTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+++++|+|+++++...++.|+++++.
T Consensus       237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          237 LAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             eeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            999999999988888899999999863

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.74  E-value=1.9e-15  Score=132.62  Aligned_cols=234  Identities=9%  Similarity=0.052  Sum_probs=163.7

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      .....+++|+|.+..+++++..++.|..||..++  ...+....  ..+..+++++++.++++...+             
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~-------------   89 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--HHQNGHCLNKQGHLIACSHGL-------------   89 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--SSEEEEEECTTCCEEEEETTT-------------
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--CCcceeeECCCCcEEEEecCC-------------
Confidence            3456789999544458889999999999999987  34443332  568899999999987776554             


Q ss_pred             eeEEEEECCCCceeEEeec-C-CCCCcEEEEEEccCCCEEEE----Ee-------------cCCeEEEEeCCCCceeeee
Q 012699          271 ASLTVWNMKTWKAMTVLPL-G-EDPPAITSLCFNHNGKILAA----SA-------------VDGMIHMFDMSAGLQITGW  331 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~----~~-------------~dg~i~v~d~~~~~~~~~~  331 (458)
                      +.|.+||..+++....... . .....+..++++|+|+++++    |+             ..+.|..++.. ++ +..+
T Consensus        90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~  167 (296)
T 3e5z_A           90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP  167 (296)
T ss_dssp             TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred             CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence            3899999988776543321 1 11224577999999998887    33             13467777765 44 3444


Q ss_pred             eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699          332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA  410 (458)
Q Consensus       332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i  410 (458)
                      ..+......++|+|+++.+++.+.++.|.+|++...+.. .....   +   ......+..++++++|+++++.  ++.|
T Consensus       168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~---~---~~~~~~p~~i~~d~~G~l~v~~--~~~v  239 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH---F---TVEPGKTDGLRVDAGGLIWASA--GDGV  239 (296)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE---E---CCSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred             ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE---e---eCCCCCCCeEEECCCCCEEEEc--CCeE
Confidence            556677899999999998888888899999999733332 11111   1   1133456779999999876665  7889


Q ss_pred             EEEEccCCCcccccCCCCCcEEEEEE-CCCCCeEEEecCCCcEE
Q 012699          411 PIYQVRGHASGMRTLPHGAAITTVDW-HPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       411 ~i~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~v~  453 (458)
                      .+|+..+ +....+..+.. +++++| .|+++.|++++.++..+
T Consensus       240 ~~~~~~g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          240 HVLTPDG-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             EEECTTS-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             EEECCCC-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            9999874 34444445555 999999 68999888888775433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.74  E-value=5.2e-15  Score=129.74  Aligned_cols=254  Identities=9%  Similarity=0.031  Sum_probs=168.5

Q ss_pred             eeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          142 TFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      .+..+.....+++|+|+++ +++++..++.|..|+..++ ..   ........+.+++++ ++++++++...++.|.+||
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---~~~~~~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---PEMHPSHHQNGHCLN-KQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---EEESSCSSEEEEEEC-TTCCEEEEETTTTEEEEEC
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---EEECCCCCcceeeEC-CCCcEEEEecCCCeEEEEc
Confidence            4445667788999999998 7788888999999998876 21   122345678899999 6777777777778999999


Q ss_pred             cCCCceeeeccCCC--CCCceeeeeecCCCCeEEEeeccc----CCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          221 VDAKRVVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASR----RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       221 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      ..+++.........  ....+..++++|+|.++++.....    ............+.|..++.. ++.....   .+..
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---~~~~  172 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI---RDRV  172 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE---CCCS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee---cCCC
Confidence            98887544332211  113467899999999888732110    000000000011466667665 4433322   3345


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCC-CCce---eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMS-AGLQ---ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ....++|+|+++.+++.+.++.|++||+. +++.   ...+..+...+.+++++++|+++++.  ++.|.+||.. ++..
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            67899999999988777778999999986 4544   23333345567789999999866665  7899999986 3322


Q ss_pred             EEeecCCcccCCCCCCCceeEEEE-ccCCCEEEEEeCCccEEEEEccCC
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMAL-DVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      ... .        .... +.+++| +|+++.|++++.++ +.-++..+.
T Consensus       250 ~~~-~--------~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          250 GRV-L--------TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EEE-E--------CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             EEE-E--------CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            211 1        1222 788899 68999999988764 444555443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.72  E-value=8.9e-15  Score=126.06  Aligned_cols=215  Identities=13%  Similarity=0.049  Sum_probs=167.0

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      ..+++|++++.++.|.+||.++++.+.++..+.. ..+.++.+.|+++++++.  +             +.|..||. ++
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--~-------------~~V~~~d~-~G   65 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--S-------------KGAKMITR-DG   65 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--B-------------SEEEEECT-TS
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--C-------------CCEEEECC-CC
Confidence            3468899999999999999999999988876532 357889999999988842  3             38999999 88


Q ss_pred             ceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCceeeeeeC------CCCCeEEEEEcCCCCEEEEec
Q 012699          282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQITGWPA------HDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~  354 (458)
                      +.+..+... ....+.++.+.|+|+++++.+. ++.|..+|. +++.+..+..      +......+++.++|+++++..
T Consensus        66 ~~~W~~~~~-~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~  143 (276)
T 3no2_A           66 RELWNIAAP-AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF  143 (276)
T ss_dssp             CEEEEEECC-TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred             CEEEEEcCC-CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence            988888753 2346889999999999999887 788888885 6777766642      222455677889999999999


Q ss_pred             CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC------C
Q 012699          355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH------G  428 (458)
Q Consensus       355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h------~  428 (458)
                      .++.|..||.. + +.++.....         ..+..+...++|++++++..+++|..+|..+++.+.++..+      .
T Consensus       144 ~~~~v~~~d~~-G-~~~w~~~~~---------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l  212 (276)
T 3no2_A          144 ATSEVREIAPN-G-QLLNSVKLS---------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL  212 (276)
T ss_dssp             TTTEEEEECTT-S-CEEEEEECS---------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred             CCCEEEEECCC-C-CEEEEEECC---------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccc
Confidence            99999999987 4 445443321         23556788899999999988889999999977766555422      2


Q ss_pred             CcEEEEEECCCCCeEEEe
Q 012699          429 AAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       429 ~~v~~~~~~~~~~~l~s~  446 (458)
                      ..+..++..++|.++++.
T Consensus       213 ~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          213 FFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SEEEEEEECTTSCEEEEE
T ss_pred             cccccceEcCCCCEEEEe
Confidence            348889999999988776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=1.4e-14  Score=125.14  Aligned_cols=241  Identities=10%  Similarity=0.059  Sum_probs=166.9

Q ss_pred             CeEEEEeCCCCCEEE-EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          149 PISCCRFSSSGNNIA-SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      ...++++++++++++ +...++.|.+|+..+.....  ........+.+++++ ++++++++.. ++.|.+||..+....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--LPFNGLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--CCCCSCCSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--EeeCCcCCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            677899999998777 44678899999876543221  112223467889998 5666666655 889999998766543


Q ss_pred             eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      . +.. .....+..+++.+++.++++...+             +.|.+|+..+......  .......+..++++|+|++
T Consensus       101 ~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l  163 (270)
T 1rwi_B          101 V-LPF-DGLNYPEGLAVDTQGAVYVADRGN-------------NRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNV  163 (270)
T ss_dssp             E-CCC-CSCSSEEEEEECTTCCEEEEEGGG-------------TEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCE
T ss_pred             e-eec-CCcCCCcceEECCCCCEEEEECCC-------------CEEEEEECCCceeEee--ccccCCCceeEEEeCCCCE
Confidence            2 221 122468899999999877665544             4899997665443321  1222235788999999987


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      +++...++.|.+||............+...+.+++++++|..+++...++.|.+|+........         .......
T Consensus       164 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---------~~~~~~~  234 (270)
T 1rwi_B          164 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---------LPFTGLN  234 (270)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---------CCCCSCS
T ss_pred             EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee---------eccCCCC
Confidence            7776678899999988765544333334678999999999877777778899999987543211         0111224


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      .+..++++|+|+++++...+++|+++++...+
T Consensus       235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            68899999999988888889999999997664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.72  E-value=1.1e-15  Score=150.42  Aligned_cols=292  Identities=10%  Similarity=-0.019  Sum_probs=179.2

Q ss_pred             CCCCCEEEEEeCCC---cEEEEecC--CCCCCCccc----cccCCCceEEEEEecCCCeEEEE-----EcCCCcEEEEEc
Q 012699          156 SSSGNNIASASVDG---TVRIWTYD--SSTPASRNA----TIYCGTEIMSLEWECKSDRLLLI-----GTADGGIKAWNV  221 (458)
Q Consensus       156 ~~~~~~l~s~~~dg---~v~iwd~~--~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~i~~wd~  221 (458)
                      +|+|++++....++   .-.+|...  ++.......    ...+...+..++|+ +++++|+.     |+.+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEEC
Confidence            36788877665443   34455443  332211100    01122368899999 67777763     333468999999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--eEEeecCCCCCcEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--MTVLPLGEDPPAITSL  299 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~  299 (458)
                      .+++.........  .....++|+|+++.++.++.+...............|++|++.++..  ...+....+...+..+
T Consensus       155 ~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          155 DSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            9988651111111  11267999999999998877542100000011123699999998764  2344434455678999


Q ss_pred             EEccCCCEEEEEecCC----eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEE
Q 012699          300 CFNHNGKILAASAVDG----MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~  372 (458)
                      .|+|+|++|+.++.++    .|++++..+++ ...+..+...+....+ ++|.+++...   .++.|.+||+.+.....+
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            9999999998887766    78888766554 4445556666667767 5666444443   257899999976542100


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCcccccCC-CCCcEEEEEECCCCCeEE----Ee
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HASGMRTLP-HGAAITTVDWHPTLPMFL----TG  446 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~----s~  446 (458)
                      .    .+. .......+..++++ ++.++++...++..+||.+.. +.....+.. +...+..++++|+++.|+    +.
T Consensus       311 ~----~l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~  384 (695)
T 2bkl_A          311 K----EIV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF  384 (695)
T ss_dssp             E----EEE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred             e----EEe-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence            0    000 01113457778888 778888888888877776652 222333333 367888899999998666    33


Q ss_pred             cCCCcEEEEeCC
Q 012699          447 SADHSVQVMSLS  458 (458)
Q Consensus       447 ~~dg~v~iw~l~  458 (458)
                      ...++|++||+.
T Consensus       385 ~~P~~v~~~d~~  396 (695)
T 2bkl_A          385 TTPRQIYKTSVS  396 (695)
T ss_dssp             TEEEEEEEEETT
T ss_pred             CCCCEEEEEECC
Confidence            345789999863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=2.3e-14  Score=127.35  Aligned_cols=255  Identities=11%  Similarity=0.041  Sum_probs=172.0

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      ....+.+. +++.+++...++.|.+||..+++....   .........++++ +++.++++...++.|.+||..+++...
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~---i~~~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR---ITGFTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE---EECCSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE---cCCCCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            34567764 345556666789999999998876532   2345678899998 455655555488999999999998877


Q ss_pred             eccCCCC---CCceeeeeecCCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          229 DLNTTDA---FPSVLDLKCSPVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       229 ~~~~~~~---~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      .+.....   ......+++ .++..+++.. .+             +.|.++|+.+++....+.....   ...++++|+
T Consensus       120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~-------------~~v~viD~~t~~~~~~i~~g~~---p~~i~~~~d  182 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQ-------------NRILKIDTETDKVVDELTIGIQ---PTSLVMDKY  182 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTC-------------CEEEEEETTTTEEEEEEECSSC---BCCCEECTT
T ss_pred             EEEcCCccccCCCcceEEE-ECCEEEEEcCCCC-------------CEEEEEECCCCeEEEEEEcCCC---ccceEEcCC
Confidence            6654431   013456666 3343444332 13             5999999999998888765432   467899999


Q ss_pred             CCEEEEEecC----------CeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          305 GKILAASAVD----------GMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       305 ~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      |++++++..+          +.|.++|..+++....+... ......++|+|+++.|+++..  .|.+||..+.+...  
T Consensus       183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~--  258 (328)
T 3dsm_A          183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV--  258 (328)
T ss_dssp             SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS--
T ss_pred             CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee--
Confidence            9877766554          78999999988877776543 246899999999998888765  89999998654210  


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEE-----eCCccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVT-----SGSVRAPIYQVRGHASGMRTLPHGAAITTVDW  436 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-----~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~  436 (458)
                         ..+.  ......+..++++|++..|+++     ..++.|.+||.. ++.+..+. -......++|
T Consensus       259 ---~~~~--~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~-~G~~P~~~~~  319 (328)
T 3dsm_A          259 ---RPFL--EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY-VGIIPGAFCW  319 (328)
T ss_dssp             ---SCSB--CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE-EEESEEEEEE
T ss_pred             ---eeee--cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE-eccCcceEEE
Confidence               0111  1114568899999955555444     467899999998 44333332 2233445555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=4.4e-15  Score=133.44  Aligned_cols=205  Identities=15%  Similarity=0.105  Sum_probs=142.8

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      ++.|.+||+.+++....       ..+..+.|+|+++.++....+...        +...|.+||+.+++........  
T Consensus        42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~--------~~~~l~~~~~~~g~~~~l~~~~--  104 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEK--------KVSEIWVADLETLSSKKILEAK--  104 (347)
T ss_dssp             EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTT--------TEEEEEEEETTTTEEEEEEEES--
T ss_pred             cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCC--------CcceEEEEECCCCceEEEEcCC--
Confidence            56799999998875432       357789999999998887654200        1136889999887766655422  


Q ss_pred             CCcEEEEEEccCCCEEEEEecC---------------------------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699          293 PPAITSLCFNHNGKILAASAVD---------------------------GMIHMFDMSAGLQITGWPAHDSAISSILFGP  345 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~d---------------------------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  345 (458)
                       . +..++|+|+|+.|+.++.+                           ..|++||+.+++.+..+.. . .+..++|+|
T Consensus       105 -~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp  180 (347)
T 2gop_A          105 -N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR  180 (347)
T ss_dssp             -E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET
T ss_pred             -C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC
Confidence             3 8999999999998887642                           5799999988876455554 3 788999999


Q ss_pred             CCCEEEEecCCC-------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--------ccE
Q 012699          346 DETSIFSLGSDG-------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--------VRA  410 (458)
Q Consensus       346 ~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--------~~i  410 (458)
                      +| +++++..++       ...+|.+. .+.......         . ..+..  ++|||++|+.++.+        ..|
T Consensus       181 dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~---------~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          181 DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE---------K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE---------E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEE
T ss_pred             Ce-EEEEEecccccccccccccEEEeC-CCceEEecc---------C-cceee--ECCCCCEEEEEEccccCCccccceE
Confidence            99 777775542       44555554 333222111         1 22333  39999999887754        367


Q ss_pred             EEEEccCCCcccccCCCCCcEEE-EEECCCCCeEEEecCCCcEEEEeC
Q 012699          411 PIYQVRGHASGMRTLPHGAAITT-VDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       411 ~i~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      ++||  ++.......+|...+.. +.|+ ++ ++++++.++.++|| +
T Consensus       247 ~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~  289 (347)
T 2gop_A          247 YIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I  289 (347)
T ss_dssp             EEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred             EEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence            8887  33322223356778886 9999 88 89999999999999 6

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=1.2e-13  Score=124.22  Aligned_cols=278  Identities=7%  Similarity=-0.033  Sum_probs=182.8

Q ss_pred             eCCCCCEEEEEeC--CC---cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEE
Q 012699          155 FSSSGNNIASASV--DG---TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAW  219 (458)
Q Consensus       155 ~~~~~~~l~s~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~w  219 (458)
                      ..|++++++....  ..   +|.++|..+++...   ....+... .++++ ++++.++++.          .++.|.+|
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~---~i~~g~~p-~i~~s-pDg~~lyv~n~~~~~~~rg~~~~~v~vi  102 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP-NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVF  102 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEE---EecCCCCC-CeEEC-CCCCEEEEEeccccccccCCCCCeEEEE
Confidence            3467777766653  22   88999998877543   22223333 89999 6777777764          36789999


Q ss_pred             EcCCCceeeeccCC-CC----CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEE-eecCCC
Q 012699          220 NVDAKRVVCDLNTT-DA----FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGED  292 (458)
Q Consensus       220 d~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~  292 (458)
                      |..+.+.+..+... ..    ......+.++|++++++.+... .            +.|.++| .+++.... +.... 
T Consensus       103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~------------~~v~viD-~t~~~~~~~i~~~~-  168 (373)
T 2mad_H          103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG------------PAVGLVV-QGGSSDDQLLSSPT-  168 (373)
T ss_pred             ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC------------CeEEEEE-CCCCEEeEEcCCCc-
Confidence            99998887776543 10    0235589999999999987642 2            4899999 99988877 64322 


Q ss_pred             CCcEEEEEEccCC-CEEEEEecCCeEEEEeCCCCceeeeee-----CCCCCe-EEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          293 PPAITSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITGWP-----AHDSAI-SSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       293 ~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                           ++.+.|++ +.+++.+.||.+.++|. +++......     ....++ ....+.+++..++..+.++.+.+.|+.
T Consensus       169 -----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~  242 (373)
T 2mad_H          169 -----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS  242 (373)
T ss_pred             -----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence                 24455654 45566778999999999 777663322     112222 234566666555555578899999997


Q ss_pred             CCCeeEEe-ecC--CcccCCCCCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCCCCcEE
Q 012699          366 NQGQVLWT-RNC--SRFCDPESSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       366 ~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                      ........ ...  ...............++++|+++.++++..          .+.|.++|..+.+.+..+. ......
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~  321 (373)
T 2mad_H          243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVD  321 (373)
T ss_pred             CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcC
Confidence            54322111 000  000011112233455889999999888754          3579999999886655553 334689


Q ss_pred             EEEECCCCC-eEEEec-CCCcEEEEeCC
Q 012699          433 TVDWHPTLP-MFLTGS-ADHSVQVMSLS  458 (458)
Q Consensus       433 ~~~~~~~~~-~l~s~~-~dg~v~iw~l~  458 (458)
                      +++|+|||+ +|+++. .++.|.+||+.
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            999999999 788777 58999999973

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.69  E-value=1.8e-14  Score=142.08  Aligned_cols=251  Identities=7%  Similarity=-0.019  Sum_probs=167.9

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCC-----cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc----
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDG-----TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG----  215 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----  215 (458)
                      +|...+..++|||||++||.+..++     +|++||+.+++....  .. ....+..++|+ ++++.|+.+..++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~-~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL-ERVKFSCMAWT-HDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE-EEECSCCEEEC-TTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc-cCcccceEEEE-eCCCEEEEEEECCccccc
Confidence            3555688999999999998776543     899999998875431  11 12236678999 67777777777655    


Q ss_pred             ------------EEEEEcCCCcee--eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-
Q 012699          216 ------------IKAWNVDAKRVV--CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-  280 (458)
Q Consensus       216 ------------i~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-  280 (458)
                                  |++|++.+++..  ..+....+...+..+.|+|+++.++........        ....|.+||+.+ 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~~l~~~d~~~~  269 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD--------PVNRLWYCDLQQE  269 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS--------SCCEEEEEEGGGS
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC--------CccEEEEEECccc
Confidence                        999999887632  222333223457789999999998887653210        024899999976 


Q ss_pred             -----Cc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCCc--eeeeeeCCCC--CeEEEEEcCC
Q 012699          281 -----WK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAGL--QITGWPAHDS--AISSILFGPD  346 (458)
Q Consensus       281 -----~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~~~~  346 (458)
                           +. ....+.  .+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..|..  .+..++|+++
T Consensus       270 ~~~~~~~~~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  346 (710)
T 2xdw_A          270 SNGITGILKWVKLI--DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS  346 (710)
T ss_dssp             SSSSCSSCCCEEEE--CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred             ccccCCccceEEee--CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence                 43 234443  22233333 588999888776653    369999998764  2344555544  6888999887


Q ss_pred             CCEEEEecCCCe--EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699          347 ETSIFSLGSDGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA  419 (458)
Q Consensus       347 ~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~  419 (458)
                      +.++++...|+.  |.+|++.+++.....         ..+...+..++++|+++.++....    .+++++||+.+++
T Consensus       347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l---------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          347 NFLVLCYLHDVKNTLQLHDLATGALLKIF---------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEE---------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCEEEEEEEECCCCCEEEec---------CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            778888888885  555666444422211         112556888999999987765433    3689999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.68  E-value=4.2e-15  Score=146.16  Aligned_cols=250  Identities=8%  Similarity=-0.043  Sum_probs=164.4

Q ss_pred             cCCCCeEEEEeCCCCCEEEE-----EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc----
Q 012699          145 GHTSPISCCRFSSSGNNIAS-----ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG----  215 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----  215 (458)
                      +|...+..++|||||++||.     |+.+.+|++||+.+++.... ... .......++|+ ++++.|+.++.+..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~-~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVI-EGGKYATPKWT-PDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCB-SCCTTCCCEEC-TTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-ccc-CcccccceEEe-cCCCEEEEEEecCCCCCc
Confidence            56667899999999999983     44457899999998875411 111 11222678999 67778888877765    


Q ss_pred             ---------EEEEEcCCCce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          216 ---------IKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       216 ---------i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                               |++|++.++..  ...+....+...+..+.++|+|+.++..+.+..         ....|.+++..+++..
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~~~~  265 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEKDFR  265 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCSSCE
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCCceE
Confidence                     99999998762  233333333346889999999998887765421         1137788877665544


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCce--eeeeeCC--CCCeEEEEEcCCCCEEEEecCC
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQ--ITGWPAH--DSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      ....   +...+....+ ++|+ ++..+.    ++.|.+||+.+++.  ...+..+  ...+..++|+ ++.++++...|
T Consensus       266 ~l~~---~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d  339 (695)
T 2bkl_A          266 LLVK---GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD  339 (695)
T ss_dssp             EEEE---CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred             Eeec---CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence            4332   2233455556 5666 544443    57899999987653  2333333  4467888888 66788888889


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA  419 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~  419 (458)
                      +..++|.+...+......       .......+..++++|+++.++....    .+++++||+.+++
T Consensus       340 g~~~l~~~~~~g~~~~~l-------~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          340 ATSEVRVATLKGKPVRTV-------QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TEEEEEEEETTCCEEEEC-------CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CEEEEEEEeCCCCeeEEe-------cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            998888766322211110       0112456777889999987775443    3789999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=7.4e-13  Score=116.09  Aligned_cols=237  Identities=12%  Similarity=0.046  Sum_probs=168.0

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ..+.+++++ +++.++++...++.|.+||.. ++... +........+..+++.+++.++++...+             +
T Consensus        15 ~~~~~i~~d-~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~   78 (299)
T 2z2n_A           15 TGPYGITVS-DKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAA-------------N   78 (299)
T ss_dssp             CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-------------T
T ss_pred             CCccceEEC-CCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCC-------------C
Confidence            567899998 677777776668899999988 55432 2222222568899999999887776544             4


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSI  350 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l  350 (458)
                      .|..||.. ++ ...+........+..++++|+++++++...++.|.+||. +++.... ...+...+..+++.++++.+
T Consensus        79 ~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  155 (299)
T 2z2n_A           79 KIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALW  155 (299)
T ss_dssp             EEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred             eEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence            89999986 33 333433333456899999999988887777889999998 5544322 23345678999999999888


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc-ccCCCCC
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM-RTLPHGA  429 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~-~~~~h~~  429 (458)
                      ++...++.|..||. ++.... ...       ......+..++++++|+++++...++.|.+|+. ++.... ....+..
T Consensus       156 v~~~~~~~i~~~~~-~g~~~~-~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  225 (299)
T 2z2n_A          156 FTENQNNAIGRITE-SGDITE-FKI-------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNA  225 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEE-EEC-------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred             EEeCCCCEEEEEcC-CCcEEE-eeC-------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCC
Confidence            87777889999998 433221 100       112345788999999997776666888999998 443221 1223556


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .+.+++++++|+++++...++.|..|+.
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECC
Confidence            7999999999997777767788988875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=6e-14  Score=138.95  Aligned_cols=288  Identities=10%  Similarity=0.030  Sum_probs=175.6

Q ss_pred             CCCCCEEEEEeCCCc---EEEEecCC-----CCCCCcc----ccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEE
Q 012699          156 SSSGNNIASASVDGT---VRIWTYDS-----STPASRN----ATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKA  218 (458)
Q Consensus       156 ~~~~~~l~s~~~dg~---v~iwd~~~-----~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~  218 (458)
                      +|+|++++....++.   -.+|....     +......    ....+...+..++|+ +++++|+.+..+     ..|++
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAAS-DDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEEC-CCCCEEEEEEcCCCCceEEEEE
Confidence            378888776654433   55665432     2211100    011112367889999 677777665443     35999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCC-CcceeeccceeEEEEECCCCce--eEEeecCCCCCc
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG-SSNIYSWGFASLTVWNMKTWKA--MTVLPLGEDPPA  295 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~  295 (458)
                      ||+.+++.+.... ..  ..+..++|+|+ +.++.+..+.... ...........|++|++.++..  ...+....+...
T Consensus       194 ~dl~tg~~~~~~~-~~--~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          194 VGVADGKPLADEL-KW--VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             EETTTCCEEEEEE-EE--EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             EECCCCCCCCccC-CC--ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            9999998754311 11  12357899999 8888877654210 0000001123699999987663  233333333345


Q ss_pred             EEEEEEccCCCEEEEEecCC-----eEEEEeCCCC--ceeeeeeCCCCCeEEEEEcCCCCEEEEecC----CCeEEEEec
Q 012699          296 ITSLCFNHNGKILAASAVDG-----MIHMFDMSAG--LQITGWPAHDSAISSILFGPDETSIFSLGS----DGKIIEWSL  364 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~  364 (458)
                      +..+.|+|||++|+..+.++     .|++||+.++  +....+..+...+.... +|+|+.|+..+.    ++.|.+||+
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence            88999999999998877654     8999999876  41455555555555554 488988887765    345999998


Q ss_pred             cCCC-eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc-CCCcccccC-CCCCcEEEEEECCCCC
Q 012699          365 QNQG-QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR-GHASGMRTL-PHGAAITTVDWHPTLP  441 (458)
Q Consensus       365 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~  441 (458)
                      .+.. .......        .....+..++++ ++.++++...++..+||.++ .+.....+. ++...+..++++|+++
T Consensus       349 ~~~~~~~~~l~~--------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  419 (741)
T 1yr2_A          349 SGSTPRFDTVVP--------ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR  419 (741)
T ss_dssp             SSSSCEEEEEEC--------CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred             CCCccccEEEec--------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence            7642 2211110        122346667777 66777778888876666554 222222332 3467899999999998


Q ss_pred             eEE----EecCCCcEEEEeCC
Q 012699          442 MFL----TGSADHSVQVMSLS  458 (458)
Q Consensus       442 ~l~----s~~~dg~v~iw~l~  458 (458)
                      .|+    +....++|++||+.
T Consensus       420 ~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          420 HAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             CEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEEcCCCCCCEEEEEECC
Confidence            666    33345789999863

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=2e-13  Score=120.66  Aligned_cols=245  Identities=12%  Similarity=0.154  Sum_probs=163.7

Q ss_pred             ceEEEEEecCCCeEEEE-------EcCCCcEEEEEcCCCceeeeccC--CCCCCceeeeeecCC-CCeEEEeecccCCCC
Q 012699          193 EIMSLEWECKSDRLLLI-------GTADGGIKAWNVDAKRVVCDLNT--TDAFPSVLDLKCSPV-EPIFVSAAASRRYGS  262 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~-------~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~  262 (458)
                      ...+++|+ +++.++++       +..++.|..||..+++.......  ......+..++++++ +.++++...+     
T Consensus        19 ~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-----   92 (314)
T 1pjx_A           19 GAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-----   92 (314)
T ss_dssp             TCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-----
T ss_pred             CccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-----
Confidence            45788998 67777776       56788999999888776432210  001145888999999 7655554432     


Q ss_pred             cceeeccceeEEEEECCCCceeEE-eecC--CCCCcEEEEEEccCCCEEEEEecC---------------CeEEEEeCCC
Q 012699          263 SNIYSWGFASLTVWNMKTWKAMTV-LPLG--EDPPAITSLCFNHNGKILAASAVD---------------GMIHMFDMSA  324 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~v~d~~~  324 (458)
                               .|.+||.. ++.... ....  .....+..++++++|+++++...+               +.|..||.. 
T Consensus        93 ---------~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           93 ---------GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             ---------EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             ---------CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence                     78899988 665433 2211  112347899999999877776554               578888866 


Q ss_pred             CceeeeeeCCCCCeEEEEEc----CCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCC-CceeEEEEccCC
Q 012699          325 GLQITGWPAHDSAISSILFG----PDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK-SCRHEMALDVNG  398 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g  398 (458)
                      ++... +..+......++|+    |+++.|+.+ ..++.|.+||+...........   +....... ..+..++++++|
T Consensus       162 g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~p~~i~~d~~G  237 (314)
T 1pjx_A          162 GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV---WGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE---EEECCCCSSCEEEEEEEBTTC
T ss_pred             CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE---EEECCCCCCCCCCceEECCCC
Confidence            54433 22334456889999    999765544 5688999999863222111000   00011122 457889999999


Q ss_pred             CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699          399 RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       399 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~  458 (458)
                      +++++...++.|.+|+..+++....+..+...+.+++|+|+++ ++++...++.|..|+++
T Consensus       238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          238 NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            9888887888999999985544444445557899999999999 55566667889988863

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.63  E-value=3.2e-13  Score=116.28  Aligned_cols=238  Identities=12%  Similarity=0.085  Sum_probs=171.6

Q ss_pred             ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCC-CCeEEEEeCCCC
Q 012699           81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHT-SPISCCRFSSSG  159 (458)
Q Consensus        81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~  159 (458)
                      ..++++++++.++.+.+|+.+...                                  .+..+..+. ..+.++.++|+|
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~----------------------------------~~w~~~~~~~~~~~~~~~~pdG   48 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKE----------------------------------IVWEYPLEKGWECNSVAATKAG   48 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTE----------------------------------EEEEEECCTTCCCCEEEECTTS
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCe----------------------------------EEEEeCCCccCCCcCeEECCCC
Confidence            456889999999999999864422                                  334444454 468899999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEEEEcCCCceeeeccCCC----
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAWNVDAKRVVCDLNTTD----  234 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~----  234 (458)
                      ++|+  +.++.|..||. +++.+..... .....+.++.+. ++++++++.+. ++.+..+|. +++.+..+....    
T Consensus        49 ~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           49 EILF--SYSKGAKMITR-DGRELWNIAA-PAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIER  122 (276)
T ss_dssp             CEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSS
T ss_pred             CEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCc
Confidence            9888  34778999998 6665432221 123467888888 78888888776 778888886 566665554321    


Q ss_pred             CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                      .......+...+++.++++...+             +.|..||.+ ++.+..+....   .+.++...++|++++++..+
T Consensus       123 ~~~~~~~v~~~~~G~~lv~~~~~-------------~~v~~~d~~-G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          123 PHAQFRQINKNKKGNYLVPLFAT-------------SEVREIAPN-GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             GGGSCSCCEECTTSCEEEEETTT-------------TEEEEECTT-SCEEEEEECSS---CCCEEEECTTSCEEEECBTT
T ss_pred             ccccccCceECCCCCEEEEecCC-------------CEEEEECCC-CCEEEEEECCC---CccceeEcCCCCEEEEeCCC
Confidence            11235567788999999887766             599999998 89988887543   34567788999999998888


Q ss_pred             CeEEEEeCCCCceeeeeeCCC------CCeEEEEEcCCCCEEEEec--CC------CeEEEEeccCCCeeEEeec
Q 012699          315 GMIHMFDMSAGLQITGWPAHD------SAISSILFGPDETSIFSLG--SD------GKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~--~d------g~i~iwd~~~~~~~~~~~~  375 (458)
                      +.|..+|..+++.+.++..+.      ..+..++..++|..+++..  ..      +..+++++...+++.|...
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            899999999999988886432      2378888899998888763  21      2446777766666666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.62  E-value=2e-13  Score=123.32  Aligned_cols=278  Identities=8%  Similarity=0.038  Sum_probs=184.2

Q ss_pred             CCCCEEEEEeC-C----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEEEc
Q 012699          157 SSGNNIASASV-D----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAWNV  221 (458)
Q Consensus       157 ~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~  221 (458)
                      |++++++.... +    ++|.++|..+.+.+....   .+... .+.++ +++++++++.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~---vG~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD---GGFLP-HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---ECSSC-EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE---CCCCC-ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            46666655544 2    699999998887654322   22333 89999 5666666654          4678999999


Q ss_pred             CCCceeeeccCC--CC---CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          222 DAKRVVCDLNTT--DA---FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       222 ~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      .+++.+..+...  ..   ......+.++|++++++.+... .            +.|.+.|+.+++.+..+...+.   
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~------------~~VsVID~~t~kvv~~I~v~g~---  221 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA------------PAVGVVDLEGKTFDRMLDVPDC---  221 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS------------CEEEEEETTTTEEEEEEECCSE---
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC------------CeEEEEECCCCeEEEEEEcCCc---
Confidence            999988877643  10   1245689999999999887642 2            4899999999999988875331   


Q ss_pred             EEEEEEccCC-CEEEEEecCCeEEEEeCCCCceeee----eeCCCCCe-EEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699          296 ITSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITG----WPAHDSAI-SSILFGPDETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       296 i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                         ....|++ +.+++.+.||.+.+.+..+++....    +.....++ ..+.+.+++..++..+..+.+.+.|+.....
T Consensus       222 ---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~  298 (426)
T 3c75_H          222 ---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA  298 (426)
T ss_dssp             ---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred             ---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence               2333433 5566667788888888755554422    22212222 2356789988887778889999999975432


Q ss_pred             eEEee-cCC--cccCCCCCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699          370 VLWTR-NCS--RFCDPESSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPHGAAITTVDW  436 (458)
Q Consensus       370 ~~~~~-~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~  436 (458)
                      ..... ...  ..............++++|+++.+++...          .+.|.++|..+.+.+..+. -.....+++|
T Consensus       299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~  377 (426)
T 3c75_H          299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINV  377 (426)
T ss_dssp             EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEE
T ss_pred             EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEE
Confidence            21100 000  00000001112234789999998888753          4579999999987665554 2236899999


Q ss_pred             CCCCC-eEEEec-CCCcEEEEeCC
Q 012699          437 HPTLP-MFLTGS-ADHSVQVMSLS  458 (458)
Q Consensus       437 ~~~~~-~l~s~~-~dg~v~iw~l~  458 (458)
                      +||++ +|+++. .++.|.|+|+.
T Consensus       378 spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          378 SQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEETT
T ss_pred             ccCCCEEEEEEcCCCCeEEEEECC
Confidence            99999 888877 58999999963

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=1.1e-12  Score=114.73  Aligned_cols=228  Identities=11%  Similarity=0.094  Sum_probs=153.9

Q ss_pred             eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      ..+..|+|.++.++++...++.|..||..+++.. .+...   ..+..+++++++.++++. .              +.|
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~---~~~~~i~~~~dG~l~v~~-~--------------~~l   75 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD---APVSSVALRQSGGYVATI-G--------------TKF   75 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS---SCEEEEEEBTTSSEEEEE-T--------------TEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC---CceEEEEECCCCCEEEEE-C--------------CeE
Confidence            4578899667888888888999999999987653 22222   468899999999965553 2              289


Q ss_pred             EEEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEec-----------CCeEEEEeCCCCceeeeeeCCCCCeEE
Q 012699          274 TVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV-----------DGMIHMFDMSAGLQITGWPAHDSAISS  340 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~  340 (458)
                      .+||..+++.........  ....++.++++|+|+++++...           .+.|+.++.. ++.. .+..+....+.
T Consensus        76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~png  153 (297)
T 3g4e_A           76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNG  153 (297)
T ss_dssp             EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEE
T ss_pred             EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccc
Confidence            999998876654433221  2235789999999996665422           2345555543 3332 23333445689


Q ss_pred             EEEcCCCCEEE-EecCCCeEEEEecc-CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          341 ILFGPDETSIF-SLGSDGKIIEWSLQ-NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       341 ~~~~~~~~~l~-~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      ++|+|+++.|+ +.+.++.|.+|++. .........   .+.........+..++++++|++.++....+.|..|+..++
T Consensus       154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~---~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR---SVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE---EEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE---EEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            99999998765 55668899999984 222221110   01111112345788999999988888778889999999877


Q ss_pred             CcccccCCCCCcEEEEEEC-CCCCeEEE
Q 012699          419 ASGMRTLPHGAAITTVDWH-PTLPMFLT  445 (458)
Q Consensus       419 ~~~~~~~~h~~~v~~~~~~-~~~~~l~s  445 (458)
                      +....+..+...+++++|. |+++.|+.
T Consensus       231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          231 KRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             CEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             eEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence            6555555566789999998 88875543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=6.8e-12  Score=109.96  Aligned_cols=239  Identities=12%  Similarity=0.081  Sum_probs=168.5

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      ...+.++++. +++.++++...++.|.+||.. ++... +........+..+++.+++.++++...+             
T Consensus        19 ~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------   82 (300)
T 2qc5_A           19 DSGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA-------------   82 (300)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-------------
T ss_pred             CCCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC-------------
Confidence            3567889988 667777777778999999988 55433 2222223568899999999877765544             


Q ss_pred             eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCE
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  349 (458)
                      +.|..+|.. ++. ..+........+..++++++++++++...++.|..+|.. ++... .+......+..+++.++++.
T Consensus        83 ~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           83 NKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             TEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence            489999988 554 334333334568999999999887777668899999987 55442 23334567899999999997


Q ss_pred             EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699          350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      +++...++.|..+|. +..... ..       .......+..++++++|+++++....+.|.+++............+..
T Consensus       160 ~v~~~~~~~i~~~~~-~g~~~~-~~-------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  230 (300)
T 2qc5_A          160 WFTENQNNSIGRITN-TGKLEE-YP-------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA  230 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEE-EE-------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC
T ss_pred             EEEecCCCeEEEECC-CCcEEE-ee-------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC
Confidence            777766889999998 333221 11       012234578999999998777666677899999843322222223456


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .+.+++++++|+++++...++.|..|+.
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC
Confidence            7899999999997777767788888874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=1.2e-11  Score=111.23  Aligned_cols=240  Identities=14%  Similarity=0.028  Sum_probs=156.2

Q ss_pred             EEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCccccc-----cCCCceEEEEEecCCCeEEEEEcC--CC
Q 012699          152 CCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATI-----YCGTEIMSLEWECKSDRLLLIGTA--DG  214 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~--dg  214 (458)
                      .++++|||++++.+.          .++.|.+||..+.+........     ........+.|+ +++++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCCC
Confidence            899999999998875          3678999999876654322111     001234578899 67777777664  57


Q ss_pred             cEEEEEcCCCceeee-ccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---
Q 012699          215 GIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL---  289 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~---  289 (458)
                      .|.++| .+++.+.. +....      ++.+.|+++ .+++...+             |.+.++|. +++.......   
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~d-------------g~~~~vd~-~g~~~~~~~~~~~  207 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQ-------------GGLAKTDH-AGGAAGAGLVGAM  207 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCceEEEEcCC-------------CCEEEEEC-CCcEEEEEecccc
Confidence            899999 99988877 65432      134445554 33333333             68899999 7766633221   


Q ss_pred             -CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCC----------CCCeEEEEEcCCCCEEEEecC-
Q 012699          290 -GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAH----------DSAISSILFGPDETSIFSLGS-  355 (458)
Q Consensus       290 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~-  355 (458)
                       .+.........+.+++..++..+..+.+.+.|+....  .+..+...          ......++++|+++.+++... 
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~  287 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE  287 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence             1111112335567766555555578899999987542  22222211          123445789999988877643 


Q ss_pred             ---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEEEccCCCcccc
Q 012699          356 ---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       356 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~~~~~~~~~~~  423 (458)
                               ++.|.++|..+.+......          .......++|+|||+ +++++. .++.|.++|..+.+....
T Consensus       288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~----------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS----------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCcccccCCCCeEEEEECCCCEEEEEEE----------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                     3579999998765543321          122478899999999 777777 489999999998876554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=4e-13  Score=119.09  Aligned_cols=281  Identities=8%  Similarity=0.006  Sum_probs=184.6

Q ss_pred             EEeCCCCCEEEEEeC-----CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEE
Q 012699          153 CRFSSSGNNIASASV-----DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIK  217 (458)
Q Consensus       153 ~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~  217 (458)
                      ....|+++.++....     ++.|.+.|..+.+.+...   ..+.... ++++ +++++++++.          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I---~vG~~P~-va~s-pDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---DGGFLPN-PVVA-DDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---EECSSCE-EEEC-TTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE---ECCCCCc-EEEC-CCCCEEEEEcccccccccCCCCCEEE
Confidence            345688888877765     679999999887765422   2222234 9999 5666666654          367899


Q ss_pred             EEEcCCCceeeeccCCCC-----CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          218 AWNVDAKRVVCDLNTTDA-----FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      +||..+++.+..+.....     ......+.++|+++.++.+... .            +.|.++|+.+++.+..+...+
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~------------~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA------------PAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS------------CEEEEEETTTTEEEEEEECCS
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC------------CeEEEEECCCCcEEEEEECCC
Confidence            999999998887764321     1246789999999998887642 2            499999999999999887543


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCC----CCCeE-EEEEc-CCCCEEEEecCCCeEEEEec
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAH----DSAIS-SILFG-PDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~~~~~dg~i~iwd~  364 (458)
                      .     ...+....+.+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++|++++ .+.+|.+.+.|+
T Consensus       181 ~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          181 C-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             E-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEEC
T ss_pred             c-----ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEEC
Confidence            1     223333455677778889988888876 5543221111    12222 24554 6776555 556899999999


Q ss_pred             cCCCeeEEe-ecCCc--ccCCCCCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCCCCcE
Q 012699          365 QNQGQVLWT-RNCSR--FCDPESSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPHGAAI  431 (458)
Q Consensus       365 ~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v  431 (458)
                      .+....... .....  .............++++|+++.+++...          .++|.++|+.+.+.+.++. -...+
T Consensus       255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~  333 (386)
T 3sjl_D          255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEI  333 (386)
T ss_dssp             TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEE
T ss_pred             CCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCc
Confidence            765321110 00000  0000011223345888999999988753          2579999999987655544 22478


Q ss_pred             EEEEECCCCC-eEEE-ecCCCcEEEEeC
Q 012699          432 TTVDWHPTLP-MFLT-GSADHSVQVMSL  457 (458)
Q Consensus       432 ~~~~~~~~~~-~l~s-~~~dg~v~iw~l  457 (458)
                      .+++++||++ +|++ ...++.|.++|.
T Consensus       334 ~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          334 DSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             CEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             ceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            8999999997 5655 456899999986

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=4.7e-13  Score=118.66  Aligned_cols=257  Identities=12%  Similarity=0.062  Sum_probs=161.1

Q ss_pred             EEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCcccccc-----CCCceEEEEEecCCCeEEEEEcC--CC
Q 012699          152 CCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATIY-----CGTEIMSLEWECKSDRLLLIGTA--DG  214 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~--dg  214 (458)
                      .++++|||++++.+.          .++.|.+||..+.+.........     .......+.|+ +++++++++..  ++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~  160 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAP  160 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSC
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCC
Confidence            499999999887765          36789999999887654322211     12345678999 67777777653  68


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEee--cCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLP--LGE  291 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~--~~~  291 (458)
                      .|.++|+.+++.+.++....    . ...+......+++.+.|             |.+.+.++.+ ++......  +..
T Consensus       161 ~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~~~~~~D-------------G~~~~v~~~~~g~v~~~~~~~~~~  222 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTFFMHCRD-------------GSLAKVAFGTEGTPEITHTEVFHP  222 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCS----E-EEEEEEETTEEEEEETT-------------SCEEEEECCSSSCCEEEECCCCSC
T ss_pred             eEEEEECCCCcEEEEEECCC----c-ceeecCCCceeEEECCC-------------CCEEEEECCCCCeEEEeecceecc
Confidence            99999999999988886542    1 12222223344444444             4666677665 44322111  011


Q ss_pred             CCCcE-EEEEEc-cCCCEEEEEecCCeEEEEeCCCCc--eeeeeeC----------CCCCeEEEEEcCCCCEEEEecC--
Q 012699          292 DPPAI-TSLCFN-HNGKILAASAVDGMIHMFDMSAGL--QITGWPA----------HDSAISSILFGPDETSIFSLGS--  355 (458)
Q Consensus       292 ~~~~i-~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~--  355 (458)
                      ....+ ....|. ++|++++ .+.+|.|++.|+.+..  .+..+..          ..+....++++|+++.++....  
T Consensus       223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~  301 (386)
T 3sjl_D          223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR  301 (386)
T ss_dssp             TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence            11112 224564 6776555 5668999999997653  2322220          1123345778999988887643  


Q ss_pred             --------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeC-CccEEEEEccCCCcccccC
Q 012699          356 --------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSG-SVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       356 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~~i~i~~~~~~~~~~~~~  425 (458)
                              .+.|.+.|+.+.+.......          ...+..++++||++ +|+++.. ++.|.++|..+.+.+..+.
T Consensus       302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v----------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          302 DEWRHKTASRFVVVLDAKTGERLAKFEM----------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEE----------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cccccCCCCCEEEEEECCCCeEEEEEEC----------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence                    25799999998766543321          13478899999997 7777654 7999999999886544333


Q ss_pred             CCCCcEEEEEECCC
Q 012699          426 PHGAAITTVDWHPT  439 (458)
Q Consensus       426 ~h~~~v~~~~~~~~  439 (458)
                       ..+..+.+.+++|
T Consensus       372 -~~~~p~~l~~s~d  384 (386)
T 3sjl_D          372 -QLGHGPQVITTAD  384 (386)
T ss_dssp             -CCCSSCCEEEECC
T ss_pred             -CCCCCceeEECCc
Confidence             2334445566655

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.59  E-value=2.3e-12  Score=117.70  Aligned_cols=250  Identities=8%  Similarity=-0.010  Sum_probs=166.7

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      .....++|+ ++++++++...++.|++||..++.........   .... +++++++..++.+..+..           .
T Consensus       131 ~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~-----------~  194 (409)
T 3hrp_A          131 KYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGT-----------H  194 (409)
T ss_dssp             CCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTT-----------C
T ss_pred             CCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEecCCC-----------c
Confidence            357889999 67888888777899999999988766554432   2334 999999998887776431           2


Q ss_pred             eEEEEECCCCceeEEe-ecCC-CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee----eeCCCCCe--EEEEE
Q 012699          272 SLTVWNMKTWKAMTVL-PLGE-DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG----WPAHDSAI--SSILF  343 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~----~~~~~~~v--~~~~~  343 (458)
                      .|.+++...+.....+ .... ....+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence            7888888765543333 1111 334568899999655666677788999999987653322    22222222  39999


Q ss_pred             cCC-CCEEEEecCCCeEEEEeccCCCeeEEeec-CCcccC---CCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccC
Q 012699          344 GPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRN-CSRFCD---PESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRG  417 (458)
Q Consensus       344 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~  417 (458)
                      +|+ +.++++-..++.|+.|+............ ......   ....-..+..++++|+|+++++-. .+++|+.|++.+
T Consensus       275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             eCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            995 66666667788999999764311111100 000000   001123478999999999777766 788999999655


Q ss_pred             CCcccccCCC---------------CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          418 HASGMRTLPH---------------GAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       418 ~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +. +..+.++               -..+..++++|++.++++-..++.|+.++++
T Consensus       355 G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          355 GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            43 2222222               2468999999999888888889999988864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=5e-12  Score=111.67  Aligned_cols=258  Identities=9%  Similarity=0.051  Sum_probs=164.7

Q ss_pred             cCCCCeEEEEeCCCCCEEEE-------EeCCCcEEEEecCCCCCCCcccc--ccCCCceEEEEEecCC-CeEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIAS-------ASVDGTVRIWTYDSSTPASRNAT--IYCGTEIMSLEWECKS-DRLLLIGTADG  214 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~~l~~~~~dg  214 (458)
                      ..-....+++|+++++++++       +..++.|.+||..+++.......  ......+..++++ ++ ++++++.. .+
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~-~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVADM-RL   92 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEET-TT
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-cCCCcEEEEEC-CC
Confidence            33445779999999988777       56788999999877654311100  0123568899998 55 66555554 44


Q ss_pred             cEEEEEcCCCceeee-ccCC--CCCCceeeeeecCCCCeEEEeecccCCCCc--ceeeccceeEEEEECCCCceeEEeec
Q 012699          215 GIKAWNVDAKRVVCD-LNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSS--NIYSWGFASLTVWNMKTWKAMTVLPL  289 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~i~i~d~~~~~~~~~~~~  289 (458)
                      .|.+||.+ ++.... ....  .....+.++++.+++.++++...+......  .......+.|..+|.. ++...... 
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence            79999998 665433 2211  112357899999999887776543100000  0000111467777766 44433322 


Q ss_pred             CCCCCcEEEEEEc----cCCCEEEEE-ecCCeEEEEeCC-CCc-----eeeeeeCCC-CCeEEEEEcCCCCEEEEecCCC
Q 012699          290 GEDPPAITSLCFN----HNGKILAAS-AVDGMIHMFDMS-AGL-----QITGWPAHD-SAISSILFGPDETSIFSLGSDG  357 (458)
Q Consensus       290 ~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~v~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg  357 (458)
                        .......++++    |+++.++++ ..++.|.+||+. +++     ....+..+. ..+..++++++|+++++...++
T Consensus       170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence              12346889999    999766555 457899999986 343     223334443 5678999999998888877788


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCC
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGH  418 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~  418 (458)
                      .|.+||..+++......         .....+.+++++|+|+.|++++ .++.|..|++...
T Consensus       248 ~i~~~d~~~g~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          248 HIEVFGPDGGQPKMRIR---------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEECTTCBSCSEEEE---------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEEcCCCCcEeEEEe---------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            99999987443322111         1225688999999999666555 4678999998754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=1.9e-13  Score=121.78  Aligned_cols=171  Identities=13%  Similarity=0.118  Sum_probs=135.3

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-----------eeEEeecCCCCCcEEEEEEccCC
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-----------AMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      .++..+++++...++++++.+              .+.+|+++..+           .....   ..+. |+.++|  ++
T Consensus        38 ~~~nlLais~~~gll~a~~~~--------------~l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f--d~   97 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS--------------KAVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF--HG   97 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT--------------EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE--ET
T ss_pred             ccccEEEEcCCCCEEEEeCCC--------------EEEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE--CC
Confidence            468899999999999999987              78889876433           11222   2445 999999  89


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      ++|+++ .++.|++||+++.........|..++.++.+.+.  .+++++.||.+.+||+.+.....             .
T Consensus        98 ~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------------~  161 (388)
T 1xip_A           98 DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------------L  161 (388)
T ss_dssp             TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------------E
T ss_pred             CEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------------c
Confidence            999998 8899999999887766667778888998887755  38889999999999998764321             2


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc--cccc---------CCCCCcEEEEEECCCCCeEEE
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS--GMRT---------LPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~--~~~~---------~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      ...|.+++|||+|  +++|..||.+++|+..+...  ...+         .+|...|.++.|.+++.+|++
T Consensus       162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            2368999999999  78899999999998877652  2222         147889999999999998876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.57  E-value=4.9e-13  Score=132.41  Aligned_cols=250  Identities=13%  Similarity=0.039  Sum_probs=159.8

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc-----
Q 012699          146 HTSPISCCRFSSSGNNIASASVD-----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG-----  215 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----  215 (458)
                      |...+..++|||||++||.++.+     .+|++||+.+++....   ......+..++|+ ++ +.|+.+..++.     
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---~~~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---ELKWVKFSGLAWL-GN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---EEEEEESCCCEES-TT-SEEEEEECCCC-----
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---cCCCceeccEEEE-CC-CEEEEEEecCcccccc
Confidence            44468899999999999887644     4699999998875421   1111223578899 45 66666655543     


Q ss_pred             ---------EEEEEcCCCce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--c
Q 012699          216 ---------IKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--K  282 (458)
Q Consensus       216 ---------i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--~  282 (458)
                               |++|++.++..  ...+....+...+..+.|+|+|+.++....+...        ....|.+||+.++  +
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--------PVNTVHVARVTNGKIG  307 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC--------SCCEEEEEEEETTEEC
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC--------CcceEEEEECCCCCCc
Confidence                     88999987652  2223333322357889999999988877654210        1148999999876  3


Q ss_pred             eeEEeecCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCC--ceeeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          283 AMTVLPLGEDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAG--LQITGWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      ....+..  +....... ++|+|+.|+..+.+    +.|.+||+.++  +....+..+...+..+.++ ++.++++...|
T Consensus       308 ~~~~l~~--~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          308 PVTALIP--DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD  383 (741)
T ss_dssp             CCEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred             ccEEecC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence            1333332  22233444 34889888887753    45999999874  3344444555567778887 55677888889


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA  419 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~  419 (458)
                      +..++|.+...+.....     +.  ......+..++++|+++.|+....    .+++++||+.+++
T Consensus       384 g~~~l~~~~~~g~~~~~-----l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          384 AKSQVLAFDLDGKPAGA-----VS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TEEEEEEEETTSCEEEE-----CB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CEEEEEEEeCCCCceee-----cc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            98888766522221111     10  112456888999999987664433    3789999997754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=1.4e-11  Score=112.50  Aligned_cols=248  Identities=8%  Similarity=-0.028  Sum_probs=160.0

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCc
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG--GIKAWNVDAKR  225 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~  225 (458)
                      .....|+|+|+++++++...++.|++||..++.....   ........ ++|+ ++++.|+++..++  .|.+++...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---~~~~~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---HPGFKGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---EETCCBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---eccCCCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCc
Confidence            4578999999999888877789999999987654321   11223334 8898 6677788877765  78899887665


Q ss_pred             eeeecc--CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--cCCCCCc--EEEE
Q 012699          226 VVCDLN--TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP--LGEDPPA--ITSL  299 (458)
Q Consensus       226 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~--~~~~~~~--i~~~  299 (458)
                      ....+.  .......+.+++++|++..++.+..+             +.|..||..++.......  ..+....  ...+
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~-------------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i  272 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN-------------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL  272 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTT-------------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECC-------------CcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence            433330  01122467889999955555544443             589999998765432211  1111111  1389


Q ss_pred             EEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCC---------------CCeEEEEEcCCCCEEEEec-CCCeEEEE
Q 012699          300 CFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHD---------------SAISSILFGPDETSIFSLG-SDGKIIEW  362 (458)
Q Consensus       300 ~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~dg~i~iw  362 (458)
                      +|+|+ +.++++-..++.|+.|+....  +..+.++.               .....++++|+|+++++-+ .++.|+.|
T Consensus       273 a~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence            99995 555555556789999997643  33333322               3478999999999888877 88999999


Q ss_pred             eccCCCeeEEeecCCcc--c---CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          363 SLQNQGQVLWTRNCSRF--C---DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ++.++............  .   .....-..+..++++|+|.++++-..+++|+.+++
T Consensus       351 ~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          351 DILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            97655322211110000  0   00111245889999999888887778888888765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=4.5e-13  Score=119.84  Aligned_cols=275  Identities=9%  Similarity=0.056  Sum_probs=165.3

Q ss_pred             CCeEEEEeCCCCCEEEEEe--CCCcEEEEecCCCCCCCc----cccccCCCceEEEEEecCCCeEEEEEcC-----CCcE
Q 012699          148 SPISCCRFSSSGNNIASAS--VDGTVRIWTYDSSTPASR----NATIYCGTEIMSLEWECKSDRLLLIGTA-----DGGI  216 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i  216 (458)
                      ..+..++++|+|+.+++..  .++.++||.+.+++....    .....+-..+..++++ ++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999988864  234356666653322100    0011123578999998 56776665443     5789


Q ss_pred             EEEEcCCCceeeeccCCC----CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          217 KAWNVDAKRVVCDLNTTD----AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      .+||+.+++.+..+....    ....+..+++++++..++.+....         ...+.|.+||+.+++....+.  .|
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---------~~~~~i~v~d~~~g~~~r~~~--~~  164 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP---------DDKAALIRVDLQTGLAARVLQ--GY  164 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS---------GGGCEEEEEETTTCCEEEECT--TC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc---------CCCCeEEEEECCCCCEEEEec--CC
Confidence            999999998766654321    113467899998655444333200         011599999999887665542  22


Q ss_pred             CCcE-EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC-eEEEEeccC--CC
Q 012699          293 PPAI-TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG-KIIEWSLQN--QG  368 (458)
Q Consensus       293 ~~~i-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~--~~  368 (458)
                      .... ....+.++|..+.+.+.+|.+..|.              ..+..|+|+|+++.|+.+..++ .+..++...  ..
T Consensus       165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             TTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             CcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            1100 0134455676677677777765442              2367899999999888887665 444444321  00


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEEEe
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~  446 (458)
                      ... ...................++++++|.++++...++.|.+|+..+++ ...+.  .+...+.+++|.++++++++.
T Consensus       231 ~~~-~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          231 QLT-DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             TCC-HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             CCC-hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEe
Confidence            000 00000000000112245679999999999888889999999983332 12222  234568999999999888777


Q ss_pred             cCCC
Q 012699          447 SADH  450 (458)
Q Consensus       447 ~~dg  450 (458)
                      +..+
T Consensus       309 ~~~~  312 (343)
T 2qe8_A          309 NQLH  312 (343)
T ss_dssp             CCGG
T ss_pred             Cccc
Confidence            6443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.52  E-value=2.4e-11  Score=107.72  Aligned_cols=227  Identities=14%  Similarity=0.046  Sum_probs=150.1

Q ss_pred             eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      .....|+|.++.++++...++.|..||..+++... +...   ..+.++.+.+++.++++. .+              .|
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~---~~v~~i~~~~dg~l~v~~-~~--------------gl  111 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALP---FMGSALAKISDSKQLIAS-DD--------------GL  111 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECS---SCEEEEEEEETTEEEEEE-TT--------------EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECC---CcceEEEEeCCCeEEEEE-CC--------------CE
Confidence            35678996667888888888999999998876532 2222   468899999999877764 22              69


Q ss_pred             EEEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEec------CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699          274 TVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV------DGMIHMFDMSAGLQITGWPAHDSAISSILFGP  345 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  345 (458)
                      .+||..+++.........  ....++.++++|+|+++++...      .+.|+.++  +++.. .+..+......++|+|
T Consensus       112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~  188 (326)
T 2ghs_A          112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSP  188 (326)
T ss_dssp             EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECT
T ss_pred             EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcC
Confidence            999998877654332211  1235889999999987665432      25666666  44433 3333334578999999


Q ss_pred             CCCEEEEe-cCCCeEEEEecc--CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc
Q 012699          346 DETSIFSL-GSDGKIIEWSLQ--NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM  422 (458)
Q Consensus       346 ~~~~l~~~-~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~  422 (458)
                      +++.|+.+ +.++.|.+|++.  ++......   ..+.........+..++++++|+++++...++.|..|+.. ++...
T Consensus       189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~---~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~  264 (326)
T 2ghs_A          189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKA---EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIA  264 (326)
T ss_dssp             TSCEEEEEETTTCEEEEEEBCTTTCCBSSCC---EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEE
T ss_pred             CCCEEEEEECCCCEEEEEEcccccCCcccCc---eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEE
Confidence            99876544 557899999986  33011000   0000011123456789999999988777777889999984 33333


Q ss_pred             ccCCCCCcEEEEEEC-CCCCeEEEe
Q 012699          423 RTLPHGAAITTVDWH-PTLPMFLTG  446 (458)
Q Consensus       423 ~~~~h~~~v~~~~~~-~~~~~l~s~  446 (458)
                      .+..+...+++++|+ |+++.|+.+
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEE
Confidence            444455679999998 888755433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.51  E-value=1.2e-11  Score=110.17  Aligned_cols=237  Identities=11%  Similarity=0.163  Sum_probs=156.0

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCC----ceeeeccC-----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAK----RVVCDLNT-----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      ....+++.+..++.|.++|+.+.    +...+++.     .........+.+.|++ ++++...+.       .+.+.|.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-------~g~~~g~  165 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-------EGEGPGG  165 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-------TSCSCCE
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-------CCCCCCe
Confidence            44556666777899999999765    55555520     0011245668899999 666655542       2233479


Q ss_pred             EEEEECCCCceeEEeecCCCCC-cEEEEEEccCCCEEEEEe-------------------cCCeEEEEeCCCCceeeeee
Q 012699          273 LTVWNMKTWKAMTVLPLGEDPP-AITSLCFNHNGKILAASA-------------------VDGMIHMFDMSAGLQITGWP  332 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-------------------~dg~i~v~d~~~~~~~~~~~  332 (458)
                      +.++|.++.+.+..+.....+. .-..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++.
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            9999999999998886543332 234578899999888874                   36799999999988888877


Q ss_pred             CCC--CCeEEEEE--cCCCCEEEEec------CCCeEEEEeccCCCeeEEeec--CCc--ccC-C-------CCCCCcee
Q 012699          333 AHD--SAISSILF--GPDETSIFSLG------SDGKIIEWSLQNQGQVLWTRN--CSR--FCD-P-------ESSKSCRH  390 (458)
Q Consensus       333 ~~~--~~v~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~--~~~--~~~-~-------~~~~~~v~  390 (458)
                      ...  .....+.|  +|+++++++++      .+++|.+|.... +.......  ...  ... .       ......+.
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            531  23455655  99999887766      466888877764 22111110  000  000 0       00024578


Q ss_pred             EEEEccCCCEEEEEeC-CccEEEEEccCCCccc---ccC-C-------C------CCcEEEEEECCCCCeEEEec
Q 012699          391 EMALDVNGRRLLVTSG-SVRAPIYQVRGHASGM---RTL-P-------H------GAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       391 ~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~---~~~-~-------h------~~~v~~~~~~~~~~~l~s~~  447 (458)
                      .+.+||||++|+++.. .+.|.+||+.......   .+. +       |      ......++++|||++|+++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8999999999999886 5899999986332111   111 1       1      01468899999999888877

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=1.3e-11  Score=108.34  Aligned_cols=233  Identities=11%  Similarity=0.089  Sum_probs=150.6

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      .......|+|....++++...++.|..|+.. ++. ..+....  ..+..++++++++++++....             +
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~--~~~~gl~~d~dG~l~v~~~~~-------------~  107 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDAT--AFTNGNAVDAQQRLVHCEHGR-------------R  107 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESC--SCEEEEEECTTSCEEEEETTT-------------T
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCC--CccceeeECCCCCEEEEECCC-------------C
Confidence            3456788995555578888889999999984 443 2232222  468899999999977665443             3


Q ss_pred             eEEEEECCCCceeEEeec-CC-CCCcEEEEEEccCCCEEEE----Eec-------------CCeEEEEeCCCCceeeeee
Q 012699          272 SLTVWNMKTWKAMTVLPL-GE-DPPAITSLCFNHNGKILAA----SAV-------------DGMIHMFDMSAGLQITGWP  332 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~v~d~~~~~~~~~~~  332 (458)
                      .|..|+.. ++....... .. ....++.++++|+|++.++    |..             .+.|+.||..+++..... 
T Consensus       108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-  185 (305)
T 3dr2_A          108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-  185 (305)
T ss_dssp             EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred             EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence            88899876 443322211 11 1134677999999998776    332             256888888766654332 


Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCC------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          333 AHDSAISSILFGPDETSIFSLGSD------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                       .......++|+|+++.|+.+...      +.|.+|++.... ......   +..  .....+..++++++|++.+ ++.
T Consensus       186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~---~~~--~~~~~pdgi~~d~~G~lwv-~~~  257 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH---FAS--VPDGLPDGFCVDRGGWLWS-SSG  257 (305)
T ss_dssp             -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE---EEC--CSSSCCCSEEECTTSCEEE-CCS
T ss_pred             -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE---EEE--CCCCCCCeEEECCCCCEEE-ecC
Confidence             34567889999999988777654      789999987643 111110   000  0123356789999999554 444


Q ss_pred             CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          407 SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       407 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                      + .|.+|+..+. ....+..+. .+.+++|+|+++.|..++.++..++
T Consensus       258 ~-gv~~~~~~g~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          258 T-GVCVFDSDGQ-LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             S-EEEEECTTSC-EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             C-cEEEECCCCC-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            4 4999998543 333333233 5889999999987877776654443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=1.4e-10  Score=101.38  Aligned_cols=240  Identities=10%  Similarity=0.051  Sum_probs=154.0

Q ss_pred             cCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699          145 GHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA  223 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~  223 (458)
                      .+..---+..|+|++ .++++...++.|..||..++...    .......+.+++++ ++++++++ . ++.|.+||.++
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RVTMDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTT
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EEeCCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCC
Confidence            344456688999964 45666677899999998876532    23345678999999 56665544 3 56799999988


Q ss_pred             CceeeeccCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          224 KRVVCDLNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       224 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      ++........  .....+.+++++|++.++++.......  ........+.|..++.. ++......   .....+.++|
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~--~~~~~~~~~~l~~~d~~-g~~~~~~~---~~~~pngi~~  156 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA--PAVLERHQGALYSLFPD-HHVKKYFD---QVDISNGLDW  156 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB--TTBCCTTCEEEEEECTT-SCEEEEEE---EESBEEEEEE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc--cccccCCCcEEEEEECC-CCEEEEee---ccccccceEE
Confidence            7754332221  122457889999999977755432110  00000111355555543 33322221   2234688999


Q ss_pred             ccCCCEEEE-EecCCeEEEEeC--CCCce-----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          302 NHNGKILAA-SAVDGMIHMFDM--SAGLQ-----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       302 ~~~~~~l~~-~~~dg~i~v~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      +|+++.|++ .+.++.|.+||+  .++..     ...+..+......+++.++|++.++....+.|..||..+++.....
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence            999987755 455789999987  44432     2223333456789999999988777777888999999865543322


Q ss_pred             ecCCcccCCCCCCCceeEEEEc-cCCCEEEEEeC
Q 012699          374 RNCSRFCDPESSKSCRHEMALD-VNGRRLLVTSG  406 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~  406 (458)
                      .         .....+++++|. |+++.|++++.
T Consensus       237 ~---------~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          237 K---------LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             E---------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             E---------CCCCCceEEEEeCCCCCEEEEEcC
Confidence            1         122458999998 89888877665

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=5.5e-12  Score=123.73  Aligned_cols=251  Identities=13%  Similarity=0.109  Sum_probs=157.2

Q ss_pred             CceEEEEEecCCCeEEEE-EcC----CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCccee
Q 012699          192 TEIMSLEWECKSDRLLLI-GTA----DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIY  266 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~-~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (458)
                      ..+..++|+ +++++|+. .+.    ...|++||+.+++.+.... ..  .....++|+ |++.|+.+..+...+.....
T Consensus       129 ~~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          129 TALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             CEEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             EEEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            467888999 56666663 322    2479999999998654311 10  113578999 99988888766321111111


Q ss_pred             eccceeEEEEECCCCce--eEEeecCC-CCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCc-eeeeeeCCCCCe
Q 012699          267 SWGFASLTVWNMKTWKA--MTVLPLGE-DPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGL-QITGWPAHDSAI  338 (458)
Q Consensus       267 ~~~~g~i~i~d~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~-~~~~~~~~~~~v  338 (458)
                      ......|++|++.+...  ...+.... +......+.|+|||++|+....    +..|+++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence            11224799999987654  33333333 3445788999999998866543    2489999998763 455566666666


Q ss_pred             EEEEEcCCCCEEEEecC-C---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEE
Q 012699          339 SSILFGPDETSIFSLGS-D---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAP  411 (458)
Q Consensus       339 ~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~  411 (458)
                      ... +++++..|+..+. +   +.|..+|+.+.....+.    .+   ..+...+.  .|+++++.|+....++   .|+
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~----~l---~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR----DL---IPERQQVL--TVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE----EE---ECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE----EE---ecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence            555 6666666554443 3   67999999875431110    01   11222233  8999999888776543   689


Q ss_pred             EEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC----CcEEEEeC
Q 012699          412 IYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD----HSVQVMSL  457 (458)
Q Consensus       412 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~l  457 (458)
                      +|++.+........+....+..+.++|+++.|+....+    +.|..||+
T Consensus       354 ~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          354 QFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            99988653322223455678888999998866654433    78888876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=1.2e-12  Score=116.52  Aligned_cols=174  Identities=11%  Similarity=0.104  Sum_probs=128.7

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC--------CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSST--------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      +++.+++++...++++|+.++ +++|++....        ............ |..++|   ++.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999875 6669865332        011112334455 999999   67788888 889999999


Q ss_pred             cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699          221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC  300 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  300 (458)
                      +.+...........  ..+.++.+.+..  ++++..+             |.+.+||++++.....      ...|+|++
T Consensus       113 v~sl~~~~~~~~~~--~~v~~i~~~~p~--~av~~~d-------------G~L~v~dl~~~~~~~~------~~~Vs~v~  169 (388)
T 1xip_A          113 LEELSEFRTVTSFE--KPVFQLKNVNNT--LVILNSV-------------NDLSALDLRTKSTKQL------AQNVTSFD  169 (388)
T ss_dssp             SSSTTCEEEEEECS--SCEEEEEECSSE--EEEEETT-------------SEEEEEETTTCCEEEE------EESEEEEE
T ss_pred             chhhhccCccceee--cceeeEEecCCC--EEEEECC-------------CCEEEEEccCCccccc------cCCceEEE
Confidence            98766544443333  456676665543  6666666             6999999998776542      23599999


Q ss_pred             EccCCCEEEEEecCCeEEEEeCCCCce--eeee------e---CCCCCeEEEEEcCCCCEEEEe
Q 012699          301 FNHNGKILAASAVDGMIHMFDMSAGLQ--ITGW------P---AHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      |+|+|  ++.|..||.+++|+...++.  ..++      .   +|...|.+|.|.+++.++++-
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            99999  67899999999999877664  4555      2   477899999999999888763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.46  E-value=1.3e-10  Score=102.06  Aligned_cols=244  Identities=13%  Similarity=0.062  Sum_probs=152.7

Q ss_pred             eeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          142 TFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      .+..+........|+|+++ ++++...++.|..|+.. ++..   ........+..++++ ++++++++...++.|..|+
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---VLLDATAFTNGNAVD-AQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---EEEESCSCEEEEEEC-TTSCEEEEETTTTEEEEEC
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---EEeCCCCccceeeEC-CCCCEEEEECCCCEEEEEC
Confidence            3344555677899999998 56777788999999873 3321   222345568899999 6677666666668899999


Q ss_pred             cCCCceeeeccCC--CCCCceeeeeecCCCCeEEEe----ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          221 VDAKRVVCDLNTT--DAFPSVLDLKCSPVEPIFVSA----AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       221 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .+ ++........  .....+.++++.+++.++++-    ......+.........+.|..+|..+++.....    ...
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~  188 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLD  188 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EES
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCC
Confidence            86 5432221111  111346789999999988862    211100000000111257888888766654432    123


Q ss_pred             cEEEEEEccCCCEEEEEecC------CeEEEEeCCCCce--eeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          295 AITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQ--ITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      ..+.++|+|+++.|+++...      +.|++|++..+..  ...+ .........+++.++|++ .+++.+ .|.+|+..
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~~  266 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDSD  266 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECTT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECCC
Confidence            46889999999988877665      6899999875431  1111 112344567899999984 444444 49999984


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                      . +..... ..         ...+..++|+|+++.|++++.++
T Consensus       267 g-~~~~~~-~~---------~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          267 G-QLLGHI-PT---------PGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             S-CEEEEE-EC---------SSCCCEEEECTTSCEEEEEETTE
T ss_pred             C-CEEEEE-EC---------CCceeEEEEeCCCCEEEEEcCCe
Confidence            3 322211 11         11378899999999998888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=1.7e-11  Score=110.71  Aligned_cols=252  Identities=14%  Similarity=0.093  Sum_probs=161.0

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCccccc-c----CCCceEEEEEecCCC
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATI-Y----CGTEIMSLEWECKSD  204 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~  204 (458)
                      +.++..-..+  .++++||+++|+.+.          .++.|.++|..+.+........ .    .......+.|+ +++
T Consensus       112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s-pDG  188 (426)
T 3c75_H          112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT-PDN  188 (426)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC-TTS
T ss_pred             EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc-CCC
Confidence            3334333345  799999999888775          3678999999988765432221 0    12335678888 677


Q ss_pred             eEEEEEcC--CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          205 RLLLIGTA--DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       205 ~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      ++++++..  ++.|.+.|+.+++.+..+....    .  ....|++ ..+++.+.+             |.+.+.+..++
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~--~~~~p~g~~~~v~~~~d-------------G~~~~V~~~~~  249 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----C--YHIFPASPTVFYMNCRD-------------GSLARVDFADG  249 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E--EEEEEEETTEEEEEETT-------------SSEEEEECCTT
T ss_pred             CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----c--eeeccCCCcEEEEEcCC-------------CCEEEEECCCC
Confidence            77777654  5789999999999988776532    1  1223332 233333333             46666666444


Q ss_pred             ceeEE----eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee--eeeeC----------CCCCeEEEEEcC
Q 012699          282 KAMTV----LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI--TGWPA----------HDSAISSILFGP  345 (458)
Q Consensus       282 ~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~~~  345 (458)
                      +....    +.....+ ....+.+.+++..++..+..+.+.+.|+......  ..+..          .......++++|
T Consensus       250 ~v~~~~~~~~~v~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~  328 (426)
T 3c75_H          250 ETKVTNTEVFHTEDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR  328 (426)
T ss_dssp             CCEEEECCCCSCTTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred             cEEEEeeeeeccCCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence            43321    2111111 1123567899888877788899999998654321  11110          011122368999


Q ss_pred             CCCEEEEecC----------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEE
Q 012699          346 DETSIFSLGS----------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIY  413 (458)
Q Consensus       346 ~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~  413 (458)
                      +++.+++...          ++.|.+.|..+.+.......          ......++|+|||+ +++++. .++.|.++
T Consensus       329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------g~~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------GHEIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------CCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            9887776532          45799999998766543321          12478899999999 888888 48999999


Q ss_pred             EccCCCccccc
Q 012699          414 QVRGHASGMRT  424 (458)
Q Consensus       414 ~~~~~~~~~~~  424 (458)
                      |+.+.+.+..+
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99998766554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.44  E-value=1.5e-11  Score=120.57  Aligned_cols=247  Identities=11%  Similarity=0.074  Sum_probs=155.7

Q ss_pred             cCCCCeEEEEeCCCCCEEEEE-----eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----
Q 012699          145 GHTSPISCCRFSSSGNNIASA-----SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-----  214 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----  214 (458)
                      +|...+..++|||||++||.+     +...+|++||+.+++....  . ........++|+  +++.|+.+..+.     
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~-~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--P-LKDVKFSGISWL--GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--E-EEEEESCCCEEE--TTTEEEEEESSCCC---
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--c-cCCceeccEEEe--CCCEEEEEEecCccccc
Confidence            455678889999999998743     3335799999998875321  1 111113567898  455555555553     


Q ss_pred             --------cEEEEEcCCCce--eeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-
Q 012699          215 --------GIKAWNVDAKRV--VCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-  282 (458)
Q Consensus       215 --------~i~~wd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-  282 (458)
                              .|++|++.++..  ...+.... +......+.++|+++.++.......         ....|.++|+.++. 
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST---------SGNRLYVKDLSQENA  271 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS---------SCCEEEEEETTSTTC
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC---------CCcEEEEEECCCCCC
Confidence                    499999987653  22222222 2234678999999998866544221         11389999998763 


Q ss_pred             eeEEeecCCCCCcEEEEEEccCCCEEEEEec-C---CeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          283 AMTVLPLGEDPPAITSLCFNHNGKILAASAV-D---GMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      ....+..  +....... ++++|..|+..+. +   +.|..+|+.++..  ...+..|...+.  .|++++++|+....+
T Consensus       272 ~~~~l~~--~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~  346 (693)
T 3iuj_A          272 PLLTVQG--DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV  346 (693)
T ss_dssp             CCEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred             ceEEEeC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence            3333332  22333343 6666666654443 3   6799999987654  345566666665  899999888776654


Q ss_pred             C---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC----ccEEEEEccCCC
Q 012699          357 G---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS----VRAPIYQVRGHA  419 (458)
Q Consensus       357 g---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----~~i~i~~~~~~~  419 (458)
                      +   .|++|++... ..... .       ......+..+.++|+++.|+....+    ++++.||+.+++
T Consensus       347 ~g~~~l~~~d~~g~-~~~~l-~-------~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          347 DATARVEQFDYEGK-RVREV-A-------LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTEEEEEEECTTSC-EEEEE-C-------CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCeeEEEEEECCCC-eeEEe-e-------cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            4   6889988743 22111 0       1123456778888998877766554    789999987653

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.43  E-value=1.4e-10  Score=103.42  Aligned_cols=247  Identities=13%  Similarity=0.146  Sum_probs=152.5

Q ss_pred             CCCCEEEE-EeCCCcEEEEecCCCCCCCc-cccc-------cCC-CceEEEEEecCCCeEEEEEcCC------CcEEEEE
Q 012699          157 SSGNNIAS-ASVDGTVRIWTYDSSTPASR-NATI-------YCG-TEIMSLEWECKSDRLLLIGTAD------GGIKAWN  220 (458)
Q Consensus       157 ~~~~~l~s-~~~dg~v~iwd~~~~~~~~~-~~~~-------~~~-~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd  220 (458)
                      +++++|+. +..+++|.++|+.+...... ...+       ..+ .....+... +++ +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            77777654 56788999999875422111 1111       111 234455666 556 66666555      7899999


Q ss_pred             cCCCceeeeccCCCCC-CceeeeeecCCCCeEEEeeccc----CCC--CcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          221 VDAKRVVCDLNTTDAF-PSVLDLKCSPVEPIFVSAAASR----RYG--SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       221 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      .++++.+.++...... ...+.+-|+|+++.+++.....    ..+  ...+.+.....|.+||+.+++....+......
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999999888754322 2345688899999888875110    000  00000011259999999998888888764322


Q ss_pred             CcEEEEEE--ccCCCEEEEEec------CCeEEEEeCCCCce--eeee--eCC----------------CCCeEEEEEcC
Q 012699          294 PAITSLCF--NHNGKILAASAV------DGMIHMFDMSAGLQ--ITGW--PAH----------------DSAISSILFGP  345 (458)
Q Consensus       294 ~~i~~~~~--~~~~~~l~~~~~------dg~i~v~d~~~~~~--~~~~--~~~----------------~~~v~~~~~~~  345 (458)
                      .....+.|  +|+++++++++.      +++|.+|....++.  ...+  ...                ......|.++|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            34556666  999999888774      56887766554321  1111  100                23467899999


Q ss_pred             CCCEEEEecC-CCeEEEEeccCCCeeEEee--cCC-cc---c--CCCCCCCceeEEEEccCCCEEEEEe
Q 012699          346 DETSIFSLGS-DGKIIEWSLQNQGQVLWTR--NCS-RF---C--DPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       346 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~--~~~-~~---~--~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      ||++|+++.. .+.|.+||+..........  ... .+   .  ...........++++|||++|+++.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999887665 7899999997443222111  110 00   0  0011123468899999999999998

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=5.3e-10  Score=99.00  Aligned_cols=230  Identities=11%  Similarity=0.054  Sum_probs=147.8

Q ss_pred             CeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          149 PISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       149 ~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      -..+..|+|++ .++++...++.|..||..+++..    .......+.+++|+ ++++++++. .+ .|.+||..+++..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~~~~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~  122 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHALPFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLT  122 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEECSSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEECCCcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEE
Confidence            35678999975 45666667889999998776432    12234578999999 567766654 44 4999999888754


Q ss_pred             eeccCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          228 CDLNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       228 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ......  .....+.++.++|++.++++......       ....+.|..++  +++......   .......++|+|++
T Consensus       123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-------~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA-------ETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDG  190 (326)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-------CTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTS
T ss_pred             EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC-------CCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCC
Confidence            332221  11235889999999997765542210       00114666666  444333221   12346789999999


Q ss_pred             CEEEEE-ecCCeEEEEeCC--CC-ce-----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          306 KILAAS-AVDGMIHMFDMS--AG-LQ-----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       306 ~~l~~~-~~dg~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      +.++.+ +.++.|.+||+.  ++ +.     ...+.........+++.++|.+.++...++.|..||.. ++..... . 
T Consensus       191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i-~-  267 (326)
T 2ghs_A          191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY-E-  267 (326)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE-E-
T ss_pred             CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEE-E-
Confidence            877655 456899999986  55 32     22223334567889999999877776667889999984 3322211 1 


Q ss_pred             CcccCCCCCCCceeEEEEc-cCCCEEEEEeCC
Q 012699          377 SRFCDPESSKSCRHEMALD-VNGRRLLVTSGS  407 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~  407 (458)
                             .....+.+++|+ |+++.|++++..
T Consensus       268 -------~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          268 -------VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -------CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -------CCCCCcEEEEEecCCCCEEEEEecC
Confidence                   123458999998 898877766543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=3.1e-11  Score=107.84  Aligned_cols=233  Identities=12%  Similarity=0.124  Sum_probs=151.3

Q ss_pred             CceEEEEEecCCCeEEEEEc--CCCcEEEEEcCCCceeeecc-----CCCCCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699          192 TEIMSLEWECKSDRLLLIGT--ADGGIKAWNVDAKRVVCDLN-----TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN  264 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  264 (458)
                      ..+..++++ ++++++++..  .++.+++|.+.+++.. .+.     ...+...+..+++++++.++++.....      
T Consensus        17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~------   88 (343)
T 2qe8_A           17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ------   88 (343)
T ss_dssp             SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH------
T ss_pred             CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC------
Confidence            467889998 6777777753  2343555555455432 221     112335789999999988766543310      


Q ss_pred             eeeccceeEEEEECCCCceeEEeecCC----CCCcEEEEEEccCCCEEE-EEe---cCCeEEEEeCCCCceeeeeeCCCC
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLPLGE----DPPAITSLCFNHNGKILA-ASA---VDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~-~~~---~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                        ....+.|.+||+.+++....+.+..    +...+..++++|++..++ +..   .++.|.+||+.+++..+.+..|..
T Consensus        89 --~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           89 --SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             --HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             --cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence              0001489999999988777776532    123468899998655554 444   578999999998887666655432


Q ss_pred             CeE-EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEE
Q 012699          337 AIS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQ  414 (458)
Q Consensus       337 ~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~  414 (458)
                      ... ...+.++|..+.+.+.++.++.|..                       .+..++|+|+|+.|+++...+ .++.++
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-----------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHL-----------------------GVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCC-----------------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             ccccccceeECCEEEEeccCCCceeceec-----------------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            111 1345557777777777877765532                       257799999999999887765 555555


Q ss_pred             ccCCC--c-----c---cccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          415 VRGHA--S-----G---MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       415 ~~~~~--~-----~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .....  .     .   ....++......++++++|.++++...++.|.+|+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            32110  0     0   011234456778999999999999888999999986

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.39  E-value=3.2e-10  Score=110.49  Aligned_cols=288  Identities=10%  Similarity=0.055  Sum_probs=177.4

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccCC--------Cc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCG--------TE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      +..|+.++.++.|.-+|..+++.+.........        .. ...+...   +..+++++.|+.|..+|.++|+.+..
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEeee
Confidence            456777778888999998888764322111000        00 0112222   45688888999999999999998877


Q ss_pred             ccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC-C------------
Q 012699          230 LNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED-P------------  293 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~-~------------  293 (458)
                      .....+......+...|   ++.. +.+......       ..+|.|..||.++++.+..+..... +            
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~v-~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~  218 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGKV-VIGNGGAEF-------GVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA  218 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTEE-EECCBCTTT-------CCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred             ecCcCCCCCCccccCCcEEECCEE-EEEeCCCcc-------CCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence            66531111111112222   3333 333221000       0236999999999999887753211 0            


Q ss_pred             ----------------CcEEEEEEccCCCEEEEEecCCe-------------------EEEEeCCCCceeeeeeC--CC-
Q 012699          294 ----------------PAITSLCFNHNGKILAASAVDGM-------------------IHMFDMSAGLQITGWPA--HD-  335 (458)
Q Consensus       294 ----------------~~i~~~~~~~~~~~l~~~~~dg~-------------------i~v~d~~~~~~~~~~~~--~~-  335 (458)
                                      .....++++|++.++++++.++.                   |..+|.++++.+..++.  |. 
T Consensus       219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~  298 (689)
T 1yiq_A          219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA  298 (689)
T ss_dssp             HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence                            01125788998889999988764                   99999999999887764  21 


Q ss_pred             ------CCeEEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeEEeecCCc----------------------ccC---
Q 012699          336 ------SAISSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCSR----------------------FCD---  381 (458)
Q Consensus       336 ------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~---  381 (458)
                            .+........+|+   .++.++.+|.++++|..+++.+........                      ...   
T Consensus       299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~  378 (689)
T 1yiq_A          299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR  378 (689)
T ss_dssp             SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred             ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence                  1222222223564   788999999999999998766532211100                      000   


Q ss_pred             ----CCC-CCCceeEEEEccCCCEEEEEeC---------------------------------------------CccEE
Q 012699          382 ----PES-SKSCRHEMALDVNGRRLLVTSG---------------------------------------------SVRAP  411 (458)
Q Consensus       382 ----~~~-~~~~v~~~~~s~~g~~l~~~~~---------------------------------------------~~~i~  411 (458)
                          +.. ....-..++++|+..++++...                                             +|.++
T Consensus       379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~  458 (689)
T 1yiq_A          379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI  458 (689)
T ss_dssp             EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred             eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence                000 0001123789999888887632                                             37799


Q ss_pred             EEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          412 IYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       412 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .||+.+++...+...+ .++..-.+...+.+++.++.||.|+.||..
T Consensus       459 A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          459 AWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             EEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECC
Confidence            9999988766555432 333334566678889999999999999963

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.37  E-value=2.8e-10  Score=110.88  Aligned_cols=269  Identities=13%  Similarity=0.171  Sum_probs=166.7

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccc-cCC--CceEE-EEEecCCCeEEEEEc------CCCcEEEEEcCCCceee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATI-YCG--TEIMS-LEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~--~~v~~-~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~  228 (458)
                      +..|+.++.|+.|..+|..+++........ ...  ..+.+ ...  .++. +++++      .+|.|..||.++|+.+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            457888888999999999988765432221 100  11110 011  1344 44443      36899999999999887


Q ss_pred             eccCCCCC-----------------------------CceeeeeecCCCCeEEEeecccCC----------CCcceeecc
Q 012699          229 DLNTTDAF-----------------------------PSVLDLKCSPVEPIFVSAAASRRY----------GSSNIYSWG  269 (458)
Q Consensus       229 ~~~~~~~~-----------------------------~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  269 (458)
                      .+......                             ..-..+++.|+...++.+..+...          +.....   
T Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~---  274 (689)
T 1yiq_A          198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL---  274 (689)
T ss_dssp             EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT---
T ss_pred             EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee---
Confidence            66531100                             001246778877777777655310          000000   


Q ss_pred             ceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCCC---
Q 012699          270 FASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHDS---  336 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---  336 (458)
                       +.|..+|.++++.+..++...+.       ..........+|+   .++.++.+|.++++|.++++.+...+....   
T Consensus       275 -~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          275 -SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             -TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             -eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence             26999999999999888754332       1222223333564   788999999999999999988743321110   


Q ss_pred             ------------------------------------CeEEEEEcCCCCEEEEecC-------------------------
Q 012699          337 ------------------------------------AISSILFGPDETSIFSLGS-------------------------  355 (458)
Q Consensus       337 ------------------------------------~v~~~~~~~~~~~l~~~~~-------------------------  355 (458)
                                                          .-..++++|+..++++...                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                                0112688888777776522                         


Q ss_pred             --------------------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          356 --------------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       356 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                                          +|.|+.||+.+++.. |.....         .....-.++..+.++++++.|+.++.||.
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-W~~~~~---------~~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-WEVPYV---------TIFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-EEEEES---------SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeE-eEccCC---------CCccCccceECCCEEEEECCCCcEEEEEC
Confidence                                377999999886543 332211         11222356678889999999999999999


Q ss_pred             cCCCcccccC-CCCCcEEEEEECCCCCeEE
Q 012699          416 RGHASGMRTL-PHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       416 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~  444 (458)
                      ++++.+.++. ++.....-+.|..+|+..+
T Consensus       504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            9998876665 3332234467778888433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.37  E-value=2.1e-11  Score=108.35  Aligned_cols=256  Identities=6%  Similarity=-0.056  Sum_probs=162.0

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEEEcCCCceeeeccCCCC----
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAWNVDAKRVVCDLNTTDA----  235 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~----  235 (458)
                      +|.+.|..+.+.+.....  ...+  .+.++ +++++++++.          .++.|.+||+.+++.+.++.....    
T Consensus        47 ~vsvID~~t~~v~~~i~v--G~~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG--AFLS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE--CTTC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEEEeC--CCCC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence            788999988876543222  2233  79999 5666666664          368899999999999988865411    


Q ss_pred             -CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE--EECCCCceeEEeecCCCCCcEEEEEEccCC-CEEEEE
Q 012699          236 -FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV--WNMKTWKAMTVLPLGEDPPAITSLCFNHNG-KILAAS  311 (458)
Q Consensus       236 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i--~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  311 (458)
                       ......+.++|++++++.+.....           ..+.+  +|+.+   ...+...+.      ..+.|++ ..+++.
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~-----------~~v~V~~iD~~t---v~~i~v~~~------~~~~p~g~~~~~~~  181 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSS-----------AAAGLSVPGASD---DQLTKSASC------FHIHPGAAATHYLG  181 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSS-----------CEEEEEETTTEE---EEEEECSSC------CCCEEEETTEEECC
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCC-----------CeEEEEEEchhh---ceEEECCCc------eEEccCCCeEEEEE
Confidence             023568999999999988764210           37888  88877   444543221      1233443 344556


Q ss_pred             ecCCeEEEEeCCC-----Cceee----eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC-
Q 012699          312 AVDGMIHMFDMSA-----GLQIT----GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD-  381 (458)
Q Consensus       312 ~~dg~i~v~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-  381 (458)
                      +.||.+.+.|+.+     ++...    .+.....+.   . .+++..++..+. +.+.+.|+......... .. .+.. 
T Consensus       182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~-~~-~~~~~  254 (368)
T 1mda_H          182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA-AI-DGNES  254 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC-CC-CSSCT
T ss_pred             cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE-EE-Eeccc
Confidence            6788888888876     43321    122223343   3 566666666666 89999998753221110 00 0000 


Q ss_pred             ----CCCCCCceeEEEEccCCCEEEEEeC---------CccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEec
Q 012699          382 ----PESSKSCRHEMALDVNGRRLLVTSG---------SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGS  447 (458)
Q Consensus       382 ----~~~~~~~v~~~~~s~~g~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~  447 (458)
                          ..........++++||++.++++..         .+.+.++|+.+.+.+..+... .....++|+|||+ ++++..
T Consensus       255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEE
T ss_pred             cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEcc
Confidence                0001111222789999999887643         245679999998765555422 3689999999998 566666


Q ss_pred             -CCCcEEEEeCC
Q 012699          448 -ADHSVQVMSLS  458 (458)
Q Consensus       448 -~dg~v~iw~l~  458 (458)
                       .++.|.++|+.
T Consensus       334 ~~~~~VsVID~~  345 (368)
T 1mda_H          334 AGTEVLDIYDAA  345 (368)
T ss_dssp             TTTTEEEEEESS
T ss_pred             CCCCeEEEEECC
Confidence             59999999973

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.37  E-value=1.9e-10  Score=111.90  Aligned_cols=269  Identities=13%  Similarity=0.126  Sum_probs=172.3

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccc-c--CCCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATI-Y--CGTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVC  228 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~--~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~  228 (458)
                      +..|+.++.|+.+..+|..+++........ .  ....+.. ...  .++ .+++++.      +|.|+.+|..+|+.+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG-KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            457888888999999999888765432221 0  0011111 111  234 4444443      6899999999999887


Q ss_pred             eccCCCCCC------------------------------ceeeeeecCCCCeEEEeecccCC----------CCcceeec
Q 012699          229 DLNTTDAFP------------------------------SVLDLKCSPVEPIFVSAAASRRY----------GSSNIYSW  268 (458)
Q Consensus       229 ~~~~~~~~~------------------------------~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  268 (458)
                      .+.......                              ....++++|++..++.+..+...          +.....  
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~--  282 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL--  282 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT--
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee--
Confidence            765432210                              01246778888877776654210          000000  


Q ss_pred             cceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCC---CEEEEEecCCeEEEEeCCCCceeeeeeCCCC--
Q 012699          269 GFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNG---KILAASAVDGMIHMFDMSAGLQITGWPAHDS--  336 (458)
Q Consensus       269 ~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--  336 (458)
                        +.|..+|.++++.+..++...+.       .....+....+|   +.++.++.+|.++++|..+++.+..++....  
T Consensus       283 --~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~  360 (677)
T 1kb0_A          283 --ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW  360 (677)
T ss_dssp             --TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred             --EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence              36999999999999888764432       122233344477   6889999999999999999998876652210  


Q ss_pred             ---------Ce------------------------EEEEEcCCCCEEEEecC----------------------------
Q 012699          337 ---------AI------------------------SSILFGPDETSIFSLGS----------------------------  355 (458)
Q Consensus       337 ---------~v------------------------~~~~~~~~~~~l~~~~~----------------------------  355 (458)
                               ++                        ..++++|++.++++...                            
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                     11                        14688898888877543                            


Q ss_pred             ---------------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          356 ---------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       356 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                                     .|.|..||+.+++. .|....         ...+....+..++.++++++.++.+++||..+++.
T Consensus       441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~~---------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVEH---------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEEE---------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccCCCCCccEEEEEeCCCCcE-EeecCC---------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                           27899999987654 443321         11233445677888999999999999999999987


Q ss_pred             ccccC-CCCCcEEEEEECCCCCeEE
Q 012699          421 GMRTL-PHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       421 ~~~~~-~h~~~v~~~~~~~~~~~l~  444 (458)
                      +..+. ++.....-+.|.++|+.++
T Consensus       511 lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          511 LWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             eeeeeCCCCcccCCEEEEeCCEEEE
Confidence            76665 3333334456778887444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.36  E-value=2.9e-10  Score=110.51  Aligned_cols=287  Identities=10%  Similarity=0.031  Sum_probs=179.5

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccC---------CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC---------GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      +..|+.++.++.|.-+|..+++.+........         ......+++.   +..+++++.|+.|..+|..+|+.+..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~v~v~~~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE---CCEEEEEcCCCEEEEEECCCCCEEee
Confidence            44666777788888888887765432211100         0001123332   45788889999999999999999887


Q ss_pred             ccCC-CCC--Cceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-----------
Q 012699          230 LNTT-DAF--PSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-----------  294 (458)
Q Consensus       230 ~~~~-~~~--~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-----------  294 (458)
                      +... ...  ..+.. ...  .+..++.+......       ..+|.|+.+|.++++.+..+.......           
T Consensus       154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~  224 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEY-------GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR  224 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred             ecCCcCcCcCcccccCcEE--ECCEEEEEeccccc-------CCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence            7654 110  01111 111  13344444321100       013699999999999988876533210           


Q ss_pred             -------------------cEEEEEEccCCCEEEEEecCC-------------------eEEEEeCCCCceeeeeeC--C
Q 012699          295 -------------------AITSLCFNHNGKILAASAVDG-------------------MIHMFDMSAGLQITGWPA--H  334 (458)
Q Consensus       295 -------------------~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~--~  334 (458)
                                         ....++++|++..+++++.++                   .|..+|.++++.+..++.  |
T Consensus       225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~  304 (677)
T 1kb0_A          225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG  304 (677)
T ss_dssp             HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred             ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence                               113578899988999887664                   599999999998877663  2


Q ss_pred             C-------CCeEEEEEcCCC---CEEEEecCCCeEEEEeccCCCeeEEeecCCcc-------------------------
Q 012699          335 D-------SAISSILFGPDE---TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF-------------------------  379 (458)
Q Consensus       335 ~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------  379 (458)
                      .       ....-+....+|   +.++.++.+|.++++|..+++.+.........                         
T Consensus       305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~  384 (677)
T 1kb0_A          305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD  384 (677)
T ss_dssp             CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred             cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence            1       122223333477   68999999999999999987654432211000                         


Q ss_pred             cCCCC-CCCceeEEEEccCCCEEEEEeCC-------------------------------------------ccEEEEEc
Q 012699          380 CDPES-SKSCRHEMALDVNGRRLLVTSGS-------------------------------------------VRAPIYQV  415 (458)
Q Consensus       380 ~~~~~-~~~~v~~~~~s~~g~~l~~~~~~-------------------------------------------~~i~i~~~  415 (458)
                      ..+.. ....-..++++|++.++++...+                                           +.|..||+
T Consensus       385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~  464 (677)
T 1kb0_A          385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP  464 (677)
T ss_dssp             CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred             ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence            00000 00011257899999888876432                                           77999999


Q ss_pred             cCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          416 RGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       416 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .+++...+.. +..++.+..+..++.+++.++.||.+++||..
T Consensus       465 ~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          465 VAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             TTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence            9887655543 33445555667788888889999999999963

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.32  E-value=5.9e-10  Score=103.11  Aligned_cols=238  Identities=10%  Similarity=0.047  Sum_probs=155.6

Q ss_pred             EEEEEcCCCcEEEEEcCCCceeeeccCCCCC-------------------------------------CceeeeeecC--
Q 012699          206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-------------------------------------PSVLDLKCSP--  246 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------------------------------------~~v~~~~~~~--  246 (458)
                      .+.+|+..|.++++-+.+++.+..+......                                     +.......+.  
T Consensus        17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~   96 (595)
T 1fwx_A           17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   96 (595)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred             EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence            3667888999999999888876655432211                                     0111122222  


Q ss_pred             ---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE-c-cCCCEEEEEe---------
Q 012699          247 ---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF-N-HNGKILAASA---------  312 (458)
Q Consensus       247 ---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~---------  312 (458)
                         ||++++....+.            +.|.+.|+.+.+....+.+... ..+..+++ + |+++++++++         
T Consensus        97 g~~DG~~lfVnd~~~------------~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~d  163 (595)
T 1fwx_A           97 GKYDGRFLFMNDKAN------------TRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVND  163 (595)
T ss_dssp             TEEEEEEEEEEETTT------------TEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CCcCCCEEEEEcCCC------------CEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCC
Confidence               455555544433            5899999999998887765432 34788888 5 9999999884         


Q ss_pred             ---------cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---------------eEEEEeccCCC
Q 012699          313 ---------VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---------------KIIEWSLQNQG  368 (458)
Q Consensus       313 ---------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~  368 (458)
                               .++.+.+.|..+.+.+.++.... ....++++|+|+++++.+.+.               .+.+.|.....
T Consensus       164 g~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          164 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             SSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             CcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence                     34689999999998888877433 456788999999998887653               24444432110


Q ss_pred             --------------eeEEeec--CCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc-----------
Q 012699          369 --------------QVLWTRN--CSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS-----------  420 (458)
Q Consensus       369 --------------~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~-----------  420 (458)
                                    .++....  ...+............+.++|||+++++++. +++|.++|+.+.+.           
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~  322 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  322 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence                          0000000  0000000112234677999999999888775 68999999986521           


Q ss_pred             ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +.....-......++|+|+|...++.--|+.|.+|++
T Consensus       323 v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          323 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             eEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            1112233467899999999965567778999999996

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.32  E-value=9.5e-09  Score=93.05  Aligned_cols=262  Identities=14%  Similarity=0.113  Sum_probs=160.0

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCce-EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEI-MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF  236 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  236 (458)
                      ++..++.++.++.|..+|..+++.......   ...+ ......   +..++.++.++.|..+|..+++.+.........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV---AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEEC---SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeC---CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence            345777888899999999988876432211   1111 111222   346788889999999999999988766553211


Q ss_pred             Cc---eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc-----EEEEEEcc--CCC
Q 012699          237 PS---VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-----ITSLCFNH--NGK  306 (458)
Q Consensus       237 ~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-----i~~~~~~~--~~~  306 (458)
                      ..   .......  +..++.+..+             |.+..+|..+++.............     +..+...|  .+.
T Consensus       176 ~~~~~~~~~~~~--~~~v~~g~~~-------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~  240 (376)
T 3q7m_A          176 LSLRGESAPTTA--FGAAVVGGDN-------------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG  240 (376)
T ss_dssp             ---CCCCCCEEE--TTEEEECCTT-------------TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT
T ss_pred             eeecCCCCcEEE--CCEEEEEcCC-------------CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC
Confidence            00   0111111  2344444443             5999999999998877764321100     00011111  245


Q ss_pred             EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699          307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK  386 (458)
Q Consensus       307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  386 (458)
                      .+++++.++.+..+|..+++.+.....  .....+..  ++..++.++.++.+..+|..+++.. +......       .
T Consensus       241 ~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~-------~  308 (376)
T 3q7m_A          241 VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLL-------H  308 (376)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTT-------T
T ss_pred             EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccC-------C
Confidence            788888899999999999988766542  33444444  3567888888999999999886543 3322100       0


Q ss_pred             CceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE-EEEECCCCCeEEEecCCCcEEEEe
Q 012699          387 SCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT-TVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       387 ~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ........  .+..|++++.+|.++.+|..+++...........+. ....  .+..|+.++.||.|..|+
T Consensus       309 ~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          309 RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            11111222  356788899999999999988876554433222222 1222  245678888999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.30  E-value=2.9e-10  Score=101.08  Aligned_cols=262  Identities=13%  Similarity=0.046  Sum_probs=161.1

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      .+.++...+++. |..++.+  +..+|. +++......  ............   +..+..++.++.|..+|.. ++...
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~--~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~  130 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD--TKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKW  130 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC--C-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred             cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE--CCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEE
Confidence            345666666664 4444444  777875 433322111  111112222332   4457778888999999998 77665


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                      ......  ..+..+...+++.+++. +.+             +.+..+|.. ++....+...  ...+.++...+++.+ 
T Consensus       131 ~~~~~~--~~~~~~~~~~~g~l~vg-t~~-------------~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~d~~g~l-  190 (330)
T 3hxj_A          131 RFKTKK--AIYATPIVSEDGTIYVG-SND-------------NYLYAINPD-GTEKWRFKTN--DAITSAASIGKDGTI-  190 (330)
T ss_dssp             EEECSS--CCCSCCEECTTSCEEEE-CTT-------------SEEEEECTT-SCEEEEEECS--SCCCSCCEECTTCCE-
T ss_pred             EEcCCC--ceeeeeEEcCCCEEEEE-cCC-------------CEEEEECCC-CCEeEEEecC--CCceeeeEEcCCCEE-
Confidence            554432  34556667767765553 333             489999998 7777666543  234666777777764 


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699          309 AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       309 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      .+++  +.|..+| .+++.+..+......+.++...+++. |..++.++.+..+|.. +.. .+.....        ...
T Consensus       191 ~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~-~~~~~~~--------~~~  256 (330)
T 3hxj_A          191 YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTE-KWRFKTG--------KRI  256 (330)
T ss_dssp             EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCE-EEEEECS--------SCC
T ss_pred             EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCE-eEEeeCC--------CCc
Confidence            4455  7899999 77777777666666788888888875 5556667888888743 332 2322211        111


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      +..+.+.+++ .|.+++.++.+..+|. +++...........+.++...++++ |..++.+|.+++...
T Consensus       257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence            2334555555 4666778888999986 4433333333445677788888887 556888999988653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.29  E-value=1.6e-08  Score=86.65  Aligned_cols=252  Identities=8%  Similarity=0.021  Sum_probs=154.3

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCc--cccc-cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASR--NATI-YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF  236 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  236 (458)
                      ++|+.+.. +.|+.++++.......  .... .....+..++|++.++.++++-..++.|..+++..+.....+..  ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ--DL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--TC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC--CC
Confidence            45555543 4788888876543210  0011 11235678999965677777777788999999987654333322  12


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec---
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV---  313 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---  313 (458)
                      .....+++.+++..++.+....            +.|.++++..........  ........++++|++..|+.+..   
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~------------~~I~~~~~~g~~~~~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~  144 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQL------------DRIEVAKMDGTQRRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRD  144 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred             CCccEEEEEecCCeEEEEECCC------------CEEEEEEcCCCCEEEEEE--CCCCCccEEEEeeCCCEEEEEECCCC
Confidence            4678899999776666554432            489999987543322222  12245789999997666666554   


Q ss_pred             CCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699          314 DGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE  391 (458)
Q Consensus       314 dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  391 (458)
                      .+.|..+++.. .....+. ........++++|++..|+ +-...+.|.++|.......... .         ....+..
T Consensus       145 ~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~---------~~~~P~g  213 (267)
T 1npe_A          145 NPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-E---------GLQYPFA  213 (267)
T ss_dssp             SCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-E---------CCCSEEE
T ss_pred             CcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-c---------CCCCceE
Confidence            36888888764 3333222 2334678999999876655 4455788999998753221111 0         1123455


Q ss_pred             EEEccCCCEEEEEe-CCccEEEEEccCCCcccccCCC-CCcEEEEEECCCCC
Q 012699          392 MALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLPH-GAAITTVDWHPTLP  441 (458)
Q Consensus       392 ~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~  441 (458)
                      ++.  ++..|+++. .++.|..++..+++....+... ......+++.|++.
T Consensus       214 i~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          214 VTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            655  355666555 4689999999877655444422 23477788888764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=1.3e-10  Score=103.39  Aligned_cols=257  Identities=12%  Similarity=-0.007  Sum_probs=153.3

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCccccccC-----CCceEEEEEecCC
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATIYC-----GTEIMSLEWECKS  203 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~  203 (458)
                      .+.++..-..+  .+.++||+++++.+.          .+++|.+||..+.+..........     ......++++ ++
T Consensus        58 v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-pD  134 (368)
T 1mda_H           58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-AS  134 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TT
T ss_pred             EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc-CC
Confidence            33444433345  799999999988886          378999999999887643322100     1345678899 67


Q ss_pred             CeEEEEEcC--CCcEEE--EEcCCCceeeeccCCCCCCceeeeeecCCCCeE-EEeecccCCCCcceeeccceeEEEEEC
Q 012699          204 DRLLLIGTA--DGGIKA--WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF-VSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       204 ~~~l~~~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      +++++++..  +..+.+  +|+.+   +..+....    .  ....|++... ++.+.+             |.+.+.|+
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~--~~~~p~g~~~~~~~~~d-------------g~~~~vd~  192 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----C--FHIHPGAAATHYLGSCP-------------ASLAASDL  192 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----C--CCCEEEETTEEECCCCT-------------TSCEEEEC
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----c--eEEccCCCeEEEEEcCC-------------CCEEEEEC
Confidence            777777764  457888  88877   33333221    1  1233444332 222233             46666777


Q ss_pred             CC-----CceeE----EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCC----------CCC
Q 012699          279 KT-----WKAMT----VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAH----------DSA  337 (458)
Q Consensus       279 ~~-----~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------~~~  337 (458)
                      .+     ++...    .+...  ..+.   . ++++..++..+. +.+.+.|.....  .+..+...          ...
T Consensus       193 ~~~~~~~~~v~~~~t~~i~vg--~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          193 AAAPAAAGIVGAQCTGAQNCS--SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBC--SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             ccccccCCeEEEEeeeeeeCC--CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            65     33221    11111  1223   3 666666666666 999999986532  22222111          011


Q ss_pred             eEEEEEcCCCCEEEEecC---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE-EEe-C
Q 012699          338 ISSILFGPDETSIFSLGS---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL-VTS-G  406 (458)
Q Consensus       338 v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~-~  406 (458)
                      ...++++|+++.++.+..         ++.+.++|+.+.+......          .......++|+|||++++ +.. .
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----------vg~~p~gi~~s~Dg~~l~va~~~~  335 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----------NGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----------EEEEECEEEECCSSSCEEEEEETT
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----------CCCCcceEEECCCCCEEEEEccCC
Confidence            222689999998886533         2356699999876543221          122478899999998554 444 4


Q ss_pred             CccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699          407 SVRAPIYQVRGHASGMRTLPHGAAITTVDWHP  438 (458)
Q Consensus       407 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~  438 (458)
                      ++.|.++|+.+.+.+..+.. ......+++.+
T Consensus       336 ~~~VsVID~~t~kvv~~I~v-g~~P~~i~~~~  366 (368)
T 1mda_H          336 TEVLDIYDAASDQDQSSVEL-DKGPESLSVQN  366 (368)
T ss_dssp             TTEEEEEESSSCEEEEECCC-CSCCCEEECCC
T ss_pred             CCeEEEEECCCCcEEEEEEC-CCCCCEEEeec
Confidence            89999999999866544442 23455666554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=8.5e-09  Score=93.37  Aligned_cols=262  Identities=13%  Similarity=0.130  Sum_probs=160.6

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccC-------CCceE-EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC-------GTEIM-SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      +..++.++.++.|..+|..+++..........       ...+. ....   .+..+++++.++.|..+|.++++.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            55788888889999999988876432221110       12222 2222   3456777888999999999999988766


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc---EEEEEEccCCCE
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA---ITSLCFNHNGKI  307 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~  307 (458)
                      ......  .......  +..++.+..+             +.+..+|.++++.+..+........   .......  +..
T Consensus       130 ~~~~~~--~~~p~~~--~~~v~v~~~~-------------g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~  190 (376)
T 3q7m_A          130 KVAGEA--LSRPVVS--DGLVLIHTSN-------------GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGA  190 (376)
T ss_dssp             ECSSCC--CSCCEEE--TTEEEEECTT-------------SEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTE
T ss_pred             eCCCce--EcCCEEE--CCEEEEEcCC-------------CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCE
Confidence            554321  1111111  2344444444             5999999999998887764322100   0112222  457


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCC----eE---EEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSA----IS---SILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~----v~---~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  378 (458)
                      +++++.++.+..+|..+++.+.........    +.   .+.-.|  .+..++.++.++.+..+|..+++.. +..... 
T Consensus       191 v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~-w~~~~~-  268 (376)
T 3q7m_A          191 AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM-WKRELG-  268 (376)
T ss_dssp             EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE-EEECCC-
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE-eeccCC-
Confidence            888888999999999999887766532110    00   011112  3457888888999999999876544 332211 


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                               ....+.  .++..+++++.++.++.+|..+++....... ....+.....  .+..|+.++.+|.|.++|.
T Consensus       269 ---------~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          269 ---------SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             ---------CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred             ---------CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence                     122233  3467888888999999999988876554431 1122222232  2456888888999999885

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.27  E-value=5e-10  Score=103.59  Aligned_cols=239  Identities=11%  Similarity=0.090  Sum_probs=153.2

Q ss_pred             CCeEEEEEc-CCCcEEEEEcCCCceeeeccCCCCCCceeeeee-c-CCCCeEEEeecccC----CCCcce-eeccceeEE
Q 012699          203 SDRLLLIGT-ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC-S-PVEPIFVSAAASRR----YGSSNI-YSWGFASLT  274 (458)
Q Consensus       203 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~~~~~----~~~~~~-~~~~~g~i~  274 (458)
                      ++++++... .++.|.+.|+++.++...+..... .....+++ . |++.++++++....    .+..+. ....++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            455555554 466799999999998875543322 34677887 5 99999988864321    111111 123347999


Q ss_pred             EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--------------------------------------e
Q 012699          275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--------------------------------------M  316 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~  316 (458)
                      +.|..+.+....+...+.   ...++++|+|+++++.+.+.                                      .
T Consensus       179 vID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            999999999888876553   35577999999999887543                                      4


Q ss_pred             EEEEeCCC--Cce-eeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEE--eecCCcccCCCCCCCcee
Q 012699          317 IHMFDMSA--GLQ-ITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLW--TRNCSRFCDPESSKSCRH  390 (458)
Q Consensus       317 i~v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~  390 (458)
                      |.|.|.++  ++. +..++. .....++.++|||+++++++ .+.+|.++|+.+.+....  ..................
T Consensus       256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            67777776  444 444443 23456899999999877665 488999999996421000  000000111123445688


Q ss_pred             EEEEccCCCEEEE-EeCCccEEEEEccC----------CCcccccCCCCCc-----EEEEEECCCCCeEEEec
Q 012699          391 EMALDVNGRRLLV-TSGSVRAPIYQVRG----------HASGMRTLPHGAA-----ITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       391 ~~~~s~~g~~l~~-~~~~~~i~i~~~~~----------~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~  447 (458)
                      .++|+|+| ++++ ..-+++|.+|++..          ...+.++..|-.+     -.++.++|||++|+++.
T Consensus       335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            99999999 5554 44589999999976          2222222233222     12335689999988864

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.21  E-value=1.3e-08  Score=85.33  Aligned_cols=210  Identities=11%  Similarity=0.046  Sum_probs=144.6

Q ss_pred             eeeeeeeeccCCC--CeEEEEeCCCCCEEEEEeC--CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc
Q 012699          136 KVDFLETFLGHTS--PISCCRFSSSGNNIASASV--DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT  211 (458)
Q Consensus       136 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  211 (458)
                      ..+.+.++. |..  ....+.|+|++.++++.+.  ++.|++.|+.+++....... ........+++.  ++.+.++.-
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTTCCEEEEEEE--TTEEEEEET
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCCcceEEEEEe--CCEEEEEEe
Confidence            334556663 443  3579999998755555543  57999999999886543221 122223355554  456666677


Q ss_pred             CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      .++.+.++|..+.+.+.++... . ..  ...++++++.++.+..+             +.|.++|..+.+....+....
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~-~~--g~glt~Dg~~l~vs~gs-------------~~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-M-KD--GWGLATDGKILYGSDGT-------------SILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-S-SS--CCEEEECSSSEEEECSS-------------SEEEEECTTTCCEEEEEECEE
T ss_pred             cCCEEEEEECCCCcEEEEEECC-C-CC--eEEEEECCCEEEEECCC-------------CeEEEEECCCCcEEEEEEECC
Confidence            7899999999999998887654 1 11  23355677766655443             599999999999888887543


Q ss_pred             CC---CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------------CCCeEEEEEcCCCCE-EEEec
Q 012699          292 DP---PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------------DSAISSILFGPDETS-IFSLG  354 (458)
Q Consensus       292 ~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~-l~~~~  354 (458)
                      ..   ..++.+.|. ++...+....++.|.+.|..+++.+..+...             ....+.|+|+|+++. ++++.
T Consensus       147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence            22   236788888 6654444445789999999999998887632             135689999998864 55666


Q ss_pred             CCCeEEEEeccCC
Q 012699          355 SDGKIIEWSLQNQ  367 (458)
Q Consensus       355 ~dg~i~iwd~~~~  367 (458)
                      ..+.+...++...
T Consensus       226 ~~~~v~~i~l~~~  238 (266)
T 2iwa_A          226 LWPKLFEIKLHLV  238 (266)
T ss_dssp             TCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEecc
Confidence            7888988888754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=6.9e-12  Score=113.00  Aligned_cols=204  Identities=15%  Similarity=0.156  Sum_probs=110.5

Q ss_pred             CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699          203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK  282 (458)
Q Consensus       203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~  282 (458)
                      ++..+++++.||.|+.||..+|+.+..+.. .   .+.+..+..++..+++++.+             |.|+.||.++++
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~d-------------g~l~a~d~~tG~   70 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPND-------------GSLYTLGSKNNE   70 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTT-------------CCEEEC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCC-------------CEEEEEECCCCc
Confidence            466788999999999999999999887765 2   34444455666666666555             699999999888


Q ss_pred             eeEEeecCCCCCcEE-EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699          283 AMTVLPLGEDPPAIT-SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE  361 (458)
Q Consensus       283 ~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  361 (458)
                      .+........ ..+. +..+. .+..+++|+.++.++.||.++|+.+..+..+.    ...++|++..+++++.|+.|+.
T Consensus        71 ~~w~~~~~~~-~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a  144 (369)
T 2hz6_A           71 GLTKLPFTIP-ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITM  144 (369)
T ss_dssp             CSEECSCCHH-HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEEC
T ss_pred             eeeeeeccCc-cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEE
Confidence            7766543210 0010 01111 34567888889999999999999888776543    2455678889999999999999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC---CEEEEEeCCccEEEEEccCCCcccccCCCCCcE-EEEEEC
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG---RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI-TTVDWH  437 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v-~~~~~~  437 (458)
                      ||.++++..- ......          ....+++++.   ..+++++.++.++.||..+++...... ...++ ....++
T Consensus       145 ~d~~tG~~~W-~~~~~~----------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~  212 (369)
T 2hz6_A          145 YDTKTRELRW-NATYFD----------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQ  212 (369)
T ss_dssp             CCSSSSSCCC-EEEEEE----------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECT
T ss_pred             EECCCCCEEE-eEeccc----------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEec
Confidence            9998765432 211100          1122233332   567778899999999998886655443 23333 334555


Q ss_pred             CCCC
Q 012699          438 PTLP  441 (458)
Q Consensus       438 ~~~~  441 (458)
                      +++.
T Consensus       213 ~dg~  216 (369)
T 2hz6_A          213 REGL  216 (369)
T ss_dssp             TSSC
T ss_pred             CCce
Confidence            5654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.19  E-value=1.2e-06  Score=87.62  Aligned_cols=283  Identities=10%  Similarity=0.062  Sum_probs=173.4

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN  220 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd  220 (458)
                      +...|.++...+++.+.+ |+.++-+..||..+++.......     ......|.++... .++. |..|+.+ -|.+||
T Consensus       213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lWigt~~-Gl~~~~  288 (795)
T 4a2l_A          213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD-SQNR-LWIGTFN-DLNIYH  288 (795)
T ss_dssp             -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC-TTSC-EEEEESS-CEEEEE
T ss_pred             CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc-CCCC-EEEEeCC-hhheEc
Confidence            346788888887776544 44444488888766432211000     1123568888877 4555 4445555 588999


Q ss_pred             cCCCceeeeccCC-----CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC----C
Q 012699          221 VDAKRVVCDLNTT-----DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG----E  291 (458)
Q Consensus       221 ~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~----~  291 (458)
                      ..+++........     -....|.++...+++.+.+....              +.|..++..+..........    -
T Consensus       289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~--------------~Gl~~~~~~~~~~~~~~~~~~~~~l  354 (795)
T 4a2l_A          289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYF--------------GGLNYYHPIRNRFKNIRNIPYKNSL  354 (795)
T ss_dssp             TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESS--------------SCEEEECGGGGSSEEECCCTTSSSC
T ss_pred             CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECC--------------CCeEEeCCCcccceEEcCCCCCCCC
Confidence            8877654332211     11246888988888876654432              37888887654432211100    1


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--------CCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--------AHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      ....|.++...++|. |.+|+.++-|..||..+++......        .....|.++...++++.|..|+.++-+..||
T Consensus       355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            234699999998886 5567778779999987665432211        1235789999988887566777777899999


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC------CCCCcEEEEEEC
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL------PHGAAITTVDWH  437 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~  437 (458)
                      ..++........     ........|.++...++|++.+.. . +.+.+|+..+........      -....|.++...
T Consensus       434 ~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  506 (795)
T 4a2l_A          434 RNSGQVENFNQR-----NSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD  506 (795)
T ss_dssp             TTTCCEEEECTT-----TSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred             CCCCcEEEeecC-----CCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence            876543221110     111234578999999988866644 4 458889887643211110      123679999999


Q ss_pred             CCCCeEEEecCCCcEEEEe
Q 012699          438 PTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       438 ~~~~~l~s~~~dg~v~iw~  456 (458)
                      ++|++.+... +| |..|+
T Consensus       507 ~~g~lWigt~-~G-l~~~~  523 (795)
T 4a2l_A          507 SHKRLWIGGE-EG-LSVFK  523 (795)
T ss_dssp             TTCCEEEEES-SC-EEEEE
T ss_pred             CCCCEEEEeC-Cc-eEEEe
Confidence            9998666544 44 66665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.19  E-value=1.3e-06  Score=87.22  Aligned_cols=282  Identities=9%  Similarity=0.048  Sum_probs=173.2

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc-----cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA-----TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      ...|.++...++|.+.+ |+.+ -+.+|+..+........     .......|.++... .++. |..|+.++-|..|+.
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g~-lWigt~~~Gl~~~~~  337 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-SQGG-MWLGTYFGGLNYYHP  337 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTSC-EEEEESSSCEEEECG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCcC-EEEEECCCCeEEeCC
Confidence            35699999998887544 4445 48888876553221100     11123568888887 4444 566777778999987


Q ss_pred             CCCceeeeccC----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC------C
Q 012699          222 DAKRVVCDLNT----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG------E  291 (458)
Q Consensus       222 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~------~  291 (458)
                      .++........    .-....|.++...+++.+.+... +             +.|..||..+++........      -
T Consensus       338 ~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~-~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~~l  403 (795)
T 4a2l_A          338 IRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN-D-------------GGLNLYNPITQRFTSYTLQEDESARGI  403 (795)
T ss_dssp             GGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES-S-------------SCEEEECTTTCCEEEECCC------CC
T ss_pred             CcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC-C-------------CCeEEEcCCCCcEEEEecCCCCcccCC
Confidence            76543221111    11124588888888877665433 2             37888998776544322111      1


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP----AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      ....|.++...++++.|.+|+.++-|.+||..+++......    .+...|.++...++|.+.+.. .+ -+.+||..+.
T Consensus       404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR  481 (795)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred             CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence            13568999999888867778887789999988765432211    234579999998888755544 44 5888987754


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-------CCCCcEEEEEECCCC
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-------PHGAAITTVDWHPTL  440 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~  440 (458)
                      .... ....  ..........|.++..+++|++.+...  +.+..|+..+...  .+.       .....|.++...++|
T Consensus       482 ~~~~-~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g  554 (795)
T 4a2l_A          482 SFTT-IEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG  554 (795)
T ss_dssp             EEEE-CCBC--TTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred             eEEE-cccc--ccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence            2211 1100  000112235688999999998776544  4588888876532  111       134579999999999


Q ss_pred             CeEEEecCCCcEEEEeC
Q 012699          441 PMFLTGSADHSVQVMSL  457 (458)
Q Consensus       441 ~~l~s~~~dg~v~iw~l  457 (458)
                      .+.++.. .| +..|+.
T Consensus       555 ~lWigT~-~G-l~~~d~  569 (795)
T 4a2l_A          555 IIWVGTR-EG-FYCFNE  569 (795)
T ss_dssp             CEEEEES-SC-EEEEET
T ss_pred             CEEEEeC-CC-ceeECC
Confidence            8665443 34 555653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=1.9e-08  Score=83.24  Aligned_cols=197  Identities=14%  Similarity=0.210  Sum_probs=136.2

Q ss_pred             CeeeeeeeeeeccCCCC--eEEEEeCCCCCEEEEEeCCC--cEEEEecCCCCCCCccccccCCCce--EEEEEecCCCeE
Q 012699          133 PEVKVDFLETFLGHTSP--ISCCRFSSSGNNIASASVDG--TVRIWTYDSSTPASRNATIYCGTEI--MSLEWECKSDRL  206 (458)
Q Consensus       133 ~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~  206 (458)
                      .....+.++++ .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++......   .....  ..++..  ++.+
T Consensus        27 ~~~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~--g~~l   99 (262)
T 3nol_A           27 PIYDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE---LGKRYFGEGISDW--KDKI   99 (262)
T ss_dssp             CEEEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE---CCTTCCEEEEEEE--TTEE
T ss_pred             cccceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe---cCCccceeEEEEe--CCEE
Confidence            34445667777 45444  4788998 676677777766  89999999988664322   22333  334443  4566


Q ss_pred             EEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       207 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      .++.-.++.+.+||.++.+.+.++....     ....+.+++..++.+..+             +.|.++|..+.+....
T Consensus       100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~-----eG~glt~dg~~L~~SdGs-------------~~i~~iDp~T~~v~~~  161 (262)
T 3nol_A          100 VGLTWKNGLGFVWNIRNLRQVRSFNYDG-----EGWGLTHNDQYLIMSDGT-------------PVLRFLDPESLTPVRT  161 (262)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEECSS-----CCCCEEECSSCEEECCSS-------------SEEEEECTTTCSEEEE
T ss_pred             EEEEeeCCEEEEEECccCcEEEEEECCC-----CceEEecCCCEEEEECCC-------------CeEEEEcCCCCeEEEE
Confidence            6666678999999999999998887643     223334566666665544             4999999999999888


Q ss_pred             eecCCCC---CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC------------CCCeEEEEEcCCCCEEE
Q 012699          287 LPLGEDP---PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH------------DSAISSILFGPDETSIF  351 (458)
Q Consensus       287 ~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~  351 (458)
                      +......   ..++.+.|. +|+..+..-.+..|.+.|..+++.+..+...            ....+.|+|+|+++.|+
T Consensus       162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf  240 (262)
T 3nol_A          162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF  240 (262)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred             EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence            8764322   345667776 6755554446889999999999988877532            23568999999887777


Q ss_pred             EecC
Q 012699          352 SLGS  355 (458)
Q Consensus       352 ~~~~  355 (458)
                      ..+.
T Consensus       241 VTGK  244 (262)
T 3nol_A          241 VTGK  244 (262)
T ss_dssp             EEET
T ss_pred             EECC
Confidence            6654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=111.56  Aligned_cols=187  Identities=14%  Similarity=0.106  Sum_probs=102.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      ++..+++++.||.|+.||..+++.......    .++.+..+. .++..+++++.||.|+.||.++++.+........ .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~-~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP-E   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH-H
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-c
Confidence            567899999999999999999887543222    333333343 4566777778999999999999887655543210 0


Q ss_pred             cee-eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          238 SVL-DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       238 ~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                      .+. ...+. .+..+++++.+             +.+..||.++++.+..+....      ...++|++..+++++.|+.
T Consensus        82 ~~~~sp~~~-~~~~v~~g~~d-------------g~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~  141 (369)
T 2hz6_A           82 LVQASPCRS-SDGILYMGKKQ-------------DIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYT  141 (369)
T ss_dssp             HHTTCSCC------CCCCEEE-------------EEEEEECCC----------------------------EEEEEEEEE
T ss_pred             ccccCceEe-cCCEEEEEeCC-------------CEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCE
Confidence            110 11111 23344444444             699999999999887765322      2345678889999999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEcCCC---CEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          317 IHMFDMSAGLQITGWPAHDSAISSILFGPDE---TSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      |+.||.++++.+..+..+.  ....++.++.   ..+++++.||.++.||..+++. .|.
T Consensus       142 v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~-~W~  198 (369)
T 2hz6_A          142 ITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV-LWI  198 (369)
T ss_dssp             EECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE-EEE
T ss_pred             EEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE-EEE
Confidence            9999999998876654221  1222333332   4677788999999999987654 443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.17  E-value=2.9e-08  Score=83.33  Aligned_cols=204  Identities=11%  Similarity=0.019  Sum_probs=138.8

Q ss_pred             eEEEEEecCCCeEEEEEcC--CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          194 IMSLEWECKSDRLLLIGTA--DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ...+.|+ +++.++++.+.  ++.|+++|+.+++.+..+....+ .....+++.  +..+.......            +
T Consensus        23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~------------~   86 (266)
T 2iwa_A           23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLK------------N   86 (266)
T ss_dssp             EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTC------------S
T ss_pred             cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecC------------C
Confidence            5789998 44655555443  57999999999999888765432 123344444  44555444333            6


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcCC
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGPD  346 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~  346 (458)
                      .+.++|..+.+.+..+... .+..   ..++++|+.++++..++.|.++|..+.+.+..+....     ..++.+.|. +
T Consensus        87 ~v~viD~~t~~v~~~i~~g-~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQ-MKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             EEEEEETTTTEEEEEEECC-SSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEEEEECCCCcEEEEEECC-CCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            9999999999999988765 1111   3356678877777778999999999988887776322     136788887 7


Q ss_pred             CCEEEEecCCCeEEEEeccCCCeeEEeecCCcc----cCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCC
Q 012699          347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF----CDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGH  418 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~  418 (458)
                      +...+....++.|.+.|..+++...........    ..........+.++|+|+++.+++++ ..+.++..++...
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            765666656889999999987654443211000    01112234578999999998777666 4688888888654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.12  E-value=6.1e-08  Score=80.25  Aligned_cols=190  Identities=12%  Similarity=0.123  Sum_probs=131.0

Q ss_pred             eEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          194 IMSLEWECKSDRLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ...+.|+  ++.++.+.+.+|  .|+++|+++++.+..+....   ........+++..+.......            +
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~~g~~ly~ltw~~------------~  107 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISDWKDKIVGLTWKN------------G  107 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESSS------------S
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEEeCCEEEEEEeeC------------C
Confidence            4788887  467777777766  89999999999988876543   233322333444554444322            5


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcCC
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGPD  346 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~  346 (458)
                      .+.+||.++.+.+..+......     ..++++++.|+....++.|.++|..+.+.+.++....     ..++.+.|. +
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG-----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~  181 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEG-----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D  181 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCC-----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEEEEECccCcEEEEEECCCCc-----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence            9999999999999999875432     2333567777776667889999999988888776422     334567776 7


Q ss_pred             CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC----CCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD----PESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      |+..+..-.++.|.+.|..+++....... ..+..    ......-.+.+|++|+++.|++.+..
T Consensus       182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~-~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          182 GEIFANVWQTNKIVRIDPETGKVTGIIDL-NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TEEEEEETTSSEEEEECTTTCBEEEEEEC-TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEEC-CcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            76666665688999999998765544322 11111    11233467899999999998888765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=4.4e-08  Score=95.22  Aligned_cols=287  Identities=13%  Similarity=0.087  Sum_probs=171.9

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccC--------CCc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC--------GTE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~  229 (458)
                      +..|+.++.++.|.-+|..+++.+........        ... ...+++.   +..++.++.|+.|..+|..+|+.+..
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeee
Confidence            44666777788888888887765432211100        000 0112222   44678888999999999999998877


Q ss_pred             ccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC-CCC------------
Q 012699          230 LNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE-DPP------------  294 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~-~~~------------  294 (458)
                      ....... ....+...|  .+..++.+......       ..+|.|..+|.++++.+..+.... .+.            
T Consensus       143 ~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~  214 (668)
T 1kv9_A          143 QQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEY-------GVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA  214 (668)
T ss_dssp             EECSCTT-SSCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             eccCCCC-CcceecCCCEEECCEEEEeCCCCCc-------CCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence            6653211 001111111  12334443321100       013699999999999998876421 110            


Q ss_pred             ----------------cEEEEEEccCCCEEEEEecCC-------------------eEEEEeCCCCceeeeeeC--CC--
Q 012699          295 ----------------AITSLCFNHNGKILAASAVDG-------------------MIHMFDMSAGLQITGWPA--HD--  335 (458)
Q Consensus       295 ----------------~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~--~~--  335 (458)
                                      ....++++|+..++++++.++                   .|..+|.++++.+..++.  |.  
T Consensus       215 ~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w  294 (668)
T 1kv9_A          215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW  294 (668)
T ss_dssp             TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             ccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence                            112468888888898888776                   399999999999887764  22  


Q ss_pred             -----CCeEEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeEEeecCC------------c-ccCC----CC------
Q 012699          336 -----SAISSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCS------------R-FCDP----ES------  384 (458)
Q Consensus       336 -----~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~-~~~~----~~------  384 (458)
                           .+.....+..+|+   .++.++.+|.++++|..+++.+.......            . ....    ..      
T Consensus       295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~  374 (668)
T 1kv9_A          295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW  374 (668)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred             cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence                 2333333334665   68899999999999999876553221110            0 0000    00      


Q ss_pred             ----CCCceeEEEEccCCCEEEEEe------------------------------------CCccEEEEEccCCCccccc
Q 012699          385 ----SKSCRHEMALDVNGRRLLVTS------------------------------------GSVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       385 ----~~~~v~~~~~s~~g~~l~~~~------------------------------------~~~~i~i~~~~~~~~~~~~  424 (458)
                          ....-..++++|+..++++..                                    .+|.|..||+.+++...+.
T Consensus       375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~  454 (668)
T 1kv9_A          375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV  454 (668)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred             CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence                000112378888877766521                                    2378999999888765554


Q ss_pred             CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          425 LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       425 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .. ..+.....+...+.+++.++.||.|+.||.
T Consensus       455 ~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          455 PY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             EE-SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cC-CCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence            32 223333344456778888999999999986

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.09  E-value=1.5e-07  Score=77.34  Aligned_cols=192  Identities=11%  Similarity=0.124  Sum_probs=130.6

Q ss_pred             CceEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699          192 TEIMSLEWECKSDRLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG  269 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (458)
                      .-...+.|+ . +.++.+.+.+|  .|+.+|+++++.+..+.....   .......+.+..+.......           
T Consensus        21 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~~~ly~ltw~~-----------   84 (243)
T 3mbr_X           21 AFTEGLFYL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWRDRLIQLTWRN-----------   84 (243)
T ss_dssp             CCEEEEEEE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSS-----------
T ss_pred             cccccEEEE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeCCEEEEEEeeC-----------
Confidence            346788997 3 66677777654  899999999999888766542   22222223344444433222           


Q ss_pred             ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEc
Q 012699          270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFG  344 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~  344 (458)
                       +.+.+||.++.+.+..+......   ..+  .++++.|+++..++.|.++|..+.+.+.++....     ..++.+.+.
T Consensus        85 -~~v~v~D~~tl~~~~ti~~~~~G---wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~  158 (243)
T 3mbr_X           85 -HEGFVYDLATLTPRARFRYPGEG---WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV  158 (243)
T ss_dssp             -SEEEEEETTTTEEEEEEECSSCC---CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             -CEEEEEECCcCcEEEEEeCCCCc---eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence             59999999999999999865432   233  3567777777778899999999988888776422     245667765


Q ss_pred             CCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC-----CCCCCceeEEEEccCCCEEEEEeCC
Q 012699          345 PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP-----ESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       345 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                       +|+.++..-.+..|.+.|..+++...+... ..+...     .....-.+.+|++|+++.|++.+..
T Consensus       159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl-~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          159 -NGELLANVWLTSRIARIDPASGKVVAWIDL-QALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             -TTEEEEEETTTTEEEEECTTTCBEEEEEEC-GGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             -CCEEEEEECCCCeEEEEECCCCCEEEEEEC-CcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence             676666665688999999998765544322 111111     1233467899999999888887764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.05  E-value=9.4e-08  Score=79.11  Aligned_cols=189  Identities=9%  Similarity=0.033  Sum_probs=130.0

Q ss_pred             eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699          194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL  273 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  273 (458)
                      ...+.|+  ++.++.+.+.+|.|+++|+++++.+..+ .... .....+++.  +..+.......            +.+
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-~FgeGit~~--g~~Ly~ltw~~------------~~v  118 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-IFAEGLASD--GERLYQLTWTE------------GLL  118 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-CCEEEEEEC--SSCEEEEESSS------------CEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-cceeEEEEe--CCEEEEEEccC------------CEE
Confidence            4678886  5788888888999999999999988877 4321 112234443  44444333222            599


Q ss_pred             EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcCCCC
Q 012699          274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGPDET  348 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~  348 (458)
                      .+||.++.+.+..+......   ..+  .++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eG---wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~  192 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEG---WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV  192 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCC---CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEECCcCcEEEEEeCCCce---eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence            99999999999999865432   233  3567888887778999999999998888776422     245677876 776


Q ss_pred             EEEEecCCCeEEEEeccCCCeeEEeecCCccc---C--CCCCCCceeEEEEccCCCEEEEEeCC
Q 012699          349 SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC---D--PESSKSCRHEMALDVNGRRLLVTSGS  407 (458)
Q Consensus       349 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~~s~~g~~l~~~~~~  407 (458)
                      ..+..-.++.|.+.|..+++...+... ..+.   .  ......-.+.+|++|+++.|++.+..
T Consensus       193 lyanvw~s~~I~vIDp~TG~V~~~Idl-~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          193 IYANIWHSSDVLEIDPATGTVVGVIDA-SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEETTCSEEEEECTTTCBEEEEEEC-HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             EEEEECCCCeEEEEeCCCCcEEEEEEC-CCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            666555688999999998765443322 1110   0  12234567899999998888777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=2.1e-05  Score=78.43  Aligned_cols=284  Identities=11%  Similarity=0.002  Sum_probs=168.4

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc------------cccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA------------TIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      ...|.++...++|. |..|+..+-|.++|..+........            .......|.++... .++. |-.|+.++
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~-lWigt~~~  333 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNN-IWIGTWGG  333 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSCC-EEEEEBSS
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCC-EEEEecCC
Confidence            35689999888885 5556664568888877654321111            01123568888876 4444 66677677


Q ss_pred             cEEEEEcCCCceeeecc-------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe
Q 012699          215 GIKAWNVDAKRVVCDLN-------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL  287 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~  287 (458)
                      -|..++..++.......       ..-....|.++...+++.+.+....              +.|..||..++......
T Consensus       334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~--------------~Gl~~~~~~~~~~~~~~  399 (781)
T 3v9f_A          334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG--------------GGINVFENGKRVAIYNK  399 (781)
T ss_dssp             CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS--------------SCEEEEETTEEEEECC-
T ss_pred             eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC--------------CcEEEEECCCCeEEEcc
Confidence            78999887655432211       1112246888888887776554322              36888887654332211


Q ss_pred             e-cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          288 P-LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       288 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      . .......|.++...+++.+ .+|+.++-+..+|..+++......  .....|.++...+++.+. .++. +-+..||.
T Consensus       400 ~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~  476 (781)
T 3v9f_A          400 ENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDL  476 (781)
T ss_dssp             ----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEES
T ss_pred             CCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeC
Confidence            0 0122356899998888764 456776779999987665432211  234679999988888644 4455 56888988


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---C-CCCcEEEEEECCCC
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---P-HGAAITTVDWHPTL  440 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~  440 (458)
                      .+....... ..   .........+.++...++|++.+.....| +..++..+... ..+.   + ....|.++...++|
T Consensus       477 ~~~~~~~~~-~~---~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g  550 (781)
T 3v9f_A          477 ASKKVIHHY-DT---SNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKG  550 (781)
T ss_dssp             SSSSCCEEE-CT---TTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTS
T ss_pred             CCCeEEecc-cC---cccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCC
Confidence            764322211 10   01112246688999999998766443344 77788765421 1111   1 24578999999999


Q ss_pred             CeEEEecCCCcEEEEeC
Q 012699          441 PMFLTGSADHSVQVMSL  457 (458)
Q Consensus       441 ~~l~s~~~dg~v~iw~l  457 (458)
                      .+.++.. +|.|..|+.
T Consensus       551 ~lWi~T~-~Glv~~~d~  566 (781)
T 3v9f_A          551 QMWLATG-EGLVCFPSA  566 (781)
T ss_dssp             CEEEEET-TEEEEESCT
T ss_pred             CEEEEEC-CCceEEECC
Confidence            8665544 666466653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.03  E-value=8.5e-08  Score=93.22  Aligned_cols=271  Identities=14%  Similarity=0.175  Sum_probs=161.1

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccC--CCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC--GTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~  229 (458)
                      +..++.++.|+.|..+|..+++..........  ...+.. ...  .++ .++++..      +|.|..+|.++|+.+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            45677888899999999988876543222110  011110 011  134 3444432      58999999999998877


Q ss_pred             ccCCCCCC-----------------------------ceeeeeecCCCCeEEEeecccCC----------CCcceeeccc
Q 012699          230 LNTTDAFP-----------------------------SVLDLKCSPVEPIFVSAAASRRY----------GSSNIYSWGF  270 (458)
Q Consensus       230 ~~~~~~~~-----------------------------~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  270 (458)
                      +.......                             ....+++.|....++.+..+...          +....    .
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~----~  269 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY----L  269 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT----T
T ss_pred             ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee----e
Confidence            65321100                             01135777777777766554210          00000    0


Q ss_pred             eeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCCC----
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHDS----  336 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----  336 (458)
                      +.|..+|.++++.+..++...+.       .+.....+..+|+   .++.++.+|.++++|..+|+.+...+....    
T Consensus       270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~  349 (668)
T 1kv9_A          270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (668)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence            36999999999999988764332       2233333334665   688999999999999999998744332110    


Q ss_pred             --------Ce------------------------EEEEEcCCCCEEEEe-------------------------------
Q 012699          337 --------AI------------------------SSILFGPDETSIFSL-------------------------------  353 (458)
Q Consensus       337 --------~v------------------------~~~~~~~~~~~l~~~-------------------------------  353 (458)
                              ++                        ..++++|+...++..                               
T Consensus       350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  429 (668)
T 1kv9_A          350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (668)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence                    00                        125677766665531                               


Q ss_pred             -----cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC
Q 012699          354 -----GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG  428 (458)
Q Consensus       354 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~  428 (458)
                           ..+|.|..||+.+++.. |.....         .......+...+.++++++.++.++.||..+++.+.++....
T Consensus       430 ~~p~~~~~g~l~A~D~~tG~~~-W~~~~~---------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~  499 (668)
T 1kv9_A          430 DVPAAVVSGALLAWDPVKQKAA-WKVPYP---------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (668)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEE-EEEEES---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCCCCccceEEEEeCCCCcEE-EEccCC---------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence                 13488999999876543 332211         112233455678899999999999999999987776654322


Q ss_pred             C-cEEEEEECCCCC-eEEEe
Q 012699          429 A-AITTVDWHPTLP-MFLTG  446 (458)
Q Consensus       429 ~-~v~~~~~~~~~~-~l~s~  446 (458)
                      . .-.-+.+..+|+ +++.+
T Consensus       500 ~~~~~p~~~~~~G~~yva~~  519 (668)
T 1kv9_A          500 GIVAAPMTFELAGRQYVAIM  519 (668)
T ss_dssp             CCCSCCEEEEETTEEEEEEE
T ss_pred             CcccCceEEEECCEEEEEEE
Confidence            1 112234445666 44443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.03  E-value=1.9e-07  Score=77.35  Aligned_cols=192  Identities=17%  Similarity=0.180  Sum_probs=132.0

Q ss_pred             eeeeeeccCCCC--eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699          138 DFLETFLGHTSP--ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG  215 (458)
Q Consensus       138 ~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  215 (458)
                      +.++++ .|...  ...+.|+ ++.++.+.+.+|.|+++|+++++.....  .....--..+++.  ++.+.+..-.++.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCE
Confidence            345555 34433  4688887 4567778888899999999999876543  2222112335543  4566666677899


Q ss_pred             EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-
Q 012699          216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-  294 (458)
Q Consensus       216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-  294 (458)
                      +.+||.++.+.+.++....   .-..++  +++..++.+..+             +.|.++|..+.+....+....... 
T Consensus       118 v~V~D~~Tl~~~~ti~~~~---eGwGLt--~Dg~~L~vSdGs-------------~~l~~iDp~T~~v~~~I~V~~~g~~  179 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYSG---EGWGLC--YWNGKLVRSDGG-------------TMLTFHEPDGFALVGAVQVKLRGQP  179 (268)
T ss_dssp             EEEEETTTTEEEEEEECSS---CCCCEE--EETTEEEEECSS-------------SEEEEECTTTCCEEEEEECEETTEE
T ss_pred             EEEEECCcCcEEEEEeCCC---ceeEEe--cCCCEEEEECCC-------------CEEEEEcCCCCeEEEEEEeCCCCcc
Confidence            9999999999998887643   223333  566766665544             499999999999988887644322 


Q ss_pred             --cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------------CCCeEEEEEcCCCCEEEEec
Q 012699          295 --AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------------DSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       295 --~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~  354 (458)
                        .++.+.|. +|+..+....+..|.+.|..+++.+..+...             ....+.|+++|+++.|+..+
T Consensus       180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence              35677777 6754444446789999999999988776532             23668999999766555444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=2.3e-05  Score=78.11  Aligned_cols=279  Identities=11%  Similarity=0.055  Sum_probs=164.6

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      ..|.++...+++.+.+ |+.+ -+.+||..+.+.......     ......|.++... .++. |..|+..+-|.++|..
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL-KDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC-TTSE-EEEEESSSCEEEEETT
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC-CCCC-EEEEeCCCCeEEECCC
Confidence            5699999988887655 4444 588888765543211111     1123568888876 4444 5556665568889988


Q ss_pred             CCceeeecc-------C-----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--
Q 012699          223 AKRVVCDLN-------T-----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP--  288 (458)
Q Consensus       223 ~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~--  288 (458)
                      ++.......       .     .-....|.++...+++.+.+....              +.|..++...........  
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~--------------~Gl~~~~~~~~~~~~~~~~~  352 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWG--------------GGINFISNAPPTFHTWSYSP  352 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBS--------------SCEEEECSSCCSCEEEC---
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecC--------------CeEEEeCCCCCcceeeccCc
Confidence            765432111       0     111246888888888775554422              378888877644332210  


Q ss_pred             -----cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee---eCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          289 -----LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW---PAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       289 -----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                           ..-....|.++...++|. |.+|+.++-|..||..+++.....   ......|.++...+++.+. .|+.++-+.
T Consensus       353 ~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~  430 (781)
T 3v9f_A          353 TQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNIS  430 (781)
T ss_dssp             -CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEE
T ss_pred             cccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEE
Confidence                 011234699999988876 556676677999998754332211   1234678999988888644 466666788


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-----CCCcEEEEE
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-----HGAAITTVD  435 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~  435 (458)
                      .+|..+..... .      .........|.++...++|++.+ |+. +.+..++..+.........     ....|.++.
T Consensus       431 ~~~~~~~~~~~-~------~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  501 (781)
T 3v9f_A          431 YYNTRLKKFQI-I------ELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA  501 (781)
T ss_dssp             EECSSSCEEEE-C------CSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred             EEcCCCCcEEE-e------ccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence            88876542211 1      00012345688899888887655 444 4588898876532211111     146799999


Q ss_pred             ECCCCCeEEEecCCCcEEEEe
Q 012699          436 WHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       436 ~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ..++|.+.+....+| +..|+
T Consensus       502 ~d~~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          502 QDSEGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             ECTTCCEEEEESSSC-EEEEC
T ss_pred             EcCCCCEEEEEcCCC-EEEEe
Confidence            999998665443344 44454

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.00  E-value=4.9e-07  Score=79.77  Aligned_cols=259  Identities=10%  Similarity=-0.006  Sum_probs=146.4

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----------------ccCCCceEEEEEecCCCeEEEEE
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----------------IYCGTEIMSLEWECKSDRLLLIG  210 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~~l~~~  210 (458)
                      ....+++|.+++++++++..++.|..|+..++........                 ......+..+++.+.+++++++ 
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence            3456788999998788888899999998776433210000                 0011347889998435655444 


Q ss_pred             cCCCcEEEEEcCCCceeeecc--CCCCCCceeeeeecC-CCCeEEEeecccC-CCC---cceeeccceeEEEEECCCCce
Q 012699          211 TADGGIKAWNVDAKRVVCDLN--TTDAFPSVLDLKCSP-VEPIFVSAAASRR-YGS---SNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       211 ~~dg~i~~wd~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      ...+.|..+|..++.......  ..........+++.+ ++.+.++...... ...   ........|.|..+|..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            444558888877654322111  111113467899999 8887766433110 000   000012236899999877654


Q ss_pred             eEEeecCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCc--eeeeeeCCCCCeEEEEEcCCCCEEEEecC-----
Q 012699          284 MTVLPLGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDETSIFSLGS-----  355 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----  355 (458)
                      ......   ....+.++++|+++.|+++ +..+.|.+|++....  ....+....+ ...+++.++|++.++...     
T Consensus       178 ~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          178 TLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            332221   1224678999999877665 456899999987521  1111211223 788999999986666544     


Q ss_pred             -----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          356 -----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       356 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                           .+.|..+|..  ...........   . .....+..+++ .+++++++...++.|..+++...
T Consensus       254 ~~~~~~~~v~~~d~~--G~~~~~~~~~~---g-~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF--GNILEVIPLPP---P-FAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TTSCEEEEEEEECTT--SCEEEEEECCT---T-TTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             ccCCCccEEEEECCC--CCEEEEEECCC---C-CccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence                 4567777764  23222211110   0 00233555665 46666555556788999887644

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.99  E-value=1.8e-07  Score=82.65  Aligned_cols=237  Identities=9%  Similarity=0.060  Sum_probs=143.2

Q ss_pred             eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-----------------CCCceeeeeecC-CCCeEEEee
Q 012699          194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-----------------AFPSVLDLKCSP-VEPIFVSAA  255 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~-~~~~~~~~~  255 (458)
                      ..+++|+ +++++++++..++.|..||..+++.........                 ....+..+++.+ ++.++++..
T Consensus        21 p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            4567788 567767888889999999988765432110000                 012467888987 555544433


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEee-cC-CCCCcEEEEEEcc-CCCEEEEEec-----------------CC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LG-EDPPAITSLCFNH-NGKILAASAV-----------------DG  315 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~~l~~~~~-----------------dg  315 (458)
                      ..              .+..+|..++....... .. ......+.+++.+ +|++.++-..                 ++
T Consensus       100 ~~--------------~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A          100 YY--------------HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             TT--------------EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             CC--------------CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence            22              57788876543222111 01 1113478899999 8976665432                 36


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCC--eeEEeecCCcccCCCCCCCceeEE
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQG--QVLWTRNCSRFCDPESSKSCRHEM  392 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~  392 (458)
                      .|..||..+++...... .......++++|+++.|+.+ +..+.|..|++....  .....      ..   ... ...+
T Consensus       166 ~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~------~~---~~g-P~gi  234 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL------VK---IPN-PGNI  234 (322)
T ss_dssp             EEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE------EE---CSS-EEEE
T ss_pred             eEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE------Ee---CCC-CCCe
Confidence            79999987665432222 12345679999999866555 557899999987531  11100      00   112 6789


Q ss_pred             EEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCC----CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          393 ALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPH----GAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       393 ~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +++++|+++++...          .+.|..++..+. ....+...    -..++++++ .+++++++...++.|.+++++
T Consensus       235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             EECCCCCEEEEecCcccccccCCCccEEEEECCCCC-EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            99999987766544          466888876533 22222211    235667777 467777776678889888763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.99  E-value=2e-07  Score=90.78  Aligned_cols=279  Identities=8%  Similarity=0.027  Sum_probs=155.5

Q ss_pred             EEEeCC-CCCEEEEEeCCC-----------cEEEEecCCCCCCCcccccc-CCCceEEEEEecCCCeEEEEEcC-CCcEE
Q 012699          152 CCRFSS-SGNNIASASVDG-----------TVRIWTYDSSTPASRNATIY-CGTEIMSLEWECKSDRLLLIGTA-DGGIK  217 (458)
Q Consensus       152 ~~~~~~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i~  217 (458)
                      ++++.| +++.++.|+.+.           .+.+||..+++......... ......++++. .++.+++.|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-CCCCEEEeCCCCCCceE
Confidence            566777 888888887543           58899998876543221111 11222345565 67888888874 45899


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-----eecCCC
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-----LPLGED  292 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-----~~~~~~  292 (458)
                      +||..+++....-..... ..-..++..+++++++.++......       ....+.+||..+.+....     ..+...
T Consensus       269 ~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~-------~~~~~e~yd~~t~~W~~~~~~~~~p~~~~  340 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGV-------FEKNGEVYSPSSKTWTSLPNAKVNPMLTA  340 (656)
T ss_dssp             EEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSS-------CCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred             EecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCc-------ccccceEeCCCCCcceeCCCccccccccc
Confidence            999998765543222221 1123455667899998888421100       113789999987654332     011110


Q ss_pred             CCcEEEEEEccCCCEEEEEecCC---------eEEEEeCCCCceeeeeeCCC---------CCeEEEEEcC-CCCEEEEe
Q 012699          293 PPAITSLCFNHNGKILAASAVDG---------MIHMFDMSAGLQITGWPAHD---------SAISSILFGP-DETSIFSL  353 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg---------~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~~~  353 (458)
                      ..   ...+..++..++.|+.+|         .+..||..+.........+.         ..-.++.|.. +++.++.|
T Consensus       341 ~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G  417 (656)
T 1k3i_A          341 DK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG  417 (656)
T ss_dssp             CT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred             cc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence            00   012234555555665554         46788887665433222111         1234455543 67788888


Q ss_pred             cCCC-----------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----------ccEE
Q 012699          354 GSDG-----------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----------VRAP  411 (458)
Q Consensus       354 ~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----------~~i~  411 (458)
                      +.++           .+.+||..+..-....  .    ........-..++..|+|+++++|+.+           ..+.
T Consensus       418 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~----~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~  491 (656)
T 1k3i_A          418 GSPDYQDSDATTNAHIITLGEPGTSPNTVFA--S----NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE  491 (656)
T ss_dssp             CBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--T----TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred             CCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--c----CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceE
Confidence            7543           5777777654321110  0    011122223456677899999998854           4689


Q ss_pred             EEEccCCCc--ccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          412 IYQVRGHAS--GMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       412 i~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                      +||..+..-  +..............+.|++++++.||.
T Consensus       492 ~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          492 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            999876531  1111111122234556799999999885

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.98  E-value=1.6e-06  Score=74.22  Aligned_cols=224  Identities=13%  Similarity=0.114  Sum_probs=134.9

Q ss_pred             EEEEEcCCCcEEEEEcCCCcee-----eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          206 LLLIGTADGGIKAWNVDAKRVV-----CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      +|+.+.. +.|+.++++.....     ..+...  ...+..+++++++..++.+....            +.|..+++..
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~--~~~~~gi~~d~~~~~ly~~d~~~------------~~I~~~~~~g   67 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP--AKVIIGLAFDCVDKVVYWTDISE------------PSIGRASLHG   67 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE--EEEEEEEEEETTTTEEEEEETTT------------TEEEEEESSS
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCC--CCcEEEEEEecCCCEEEEEECCC------------CEEEEEecCC
Confidence            4444443 47888888765421     011111  13467899999777666555433            5999999976


Q ss_pred             CceeEEeecCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---C
Q 012699          281 WKAMTVLPLGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---D  356 (458)
Q Consensus       281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d  356 (458)
                      ......+.  ........++++|++..|+.+ ...+.|.++++..................++++|++..|+.+..   .
T Consensus        68 ~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~  145 (267)
T 1npe_A           68 GEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN  145 (267)
T ss_dssp             CCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred             CCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence            55433332  222457899999976666554 44678999998743322222222246789999996655554443   4


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEE
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVD  435 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~  435 (458)
                      +.|..+++......... .        ........++++|++..|+++.. .++|..+++.+..... +.........++
T Consensus       146 ~~I~~~~~dg~~~~~~~-~--------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~~~~~~P~gi~  215 (267)
T 1npe_A          146 PKIETSHMDGTNRRILA-Q--------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VLEGLQYPFAVT  215 (267)
T ss_dssp             CEEEEEETTSCCCEEEE-C--------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EEECCCSEEEEE
T ss_pred             cEEEEEecCCCCcEEEE-E--------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-EecCCCCceEEE
Confidence            68888887643221110 0        11235788999998877766664 5789999997653222 211223446676


Q ss_pred             ECCCCCeEEEecCCCcEEEEeC
Q 012699          436 WHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       436 ~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .. .+.++++....+.|.+++.
T Consensus       216 ~d-~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          216 SY-GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EE-TTEEEEEETTTTEEEEEET
T ss_pred             Ee-CCEEEEEECCCCeEEEEeC
Confidence            64 3445555556678888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.98  E-value=4.6e-07  Score=74.42  Aligned_cols=192  Identities=13%  Similarity=0.166  Sum_probs=130.2

Q ss_pred             eeeeeeccCCC--CeEEEEeCCCCCEEEEEeCCC--cEEEEecCCCCCCCccccccCCCce--EEEEEecCCCeEEEEEc
Q 012699          138 DFLETFLGHTS--PISCCRFSSSGNNIASASVDG--TVRIWTYDSSTPASRNATIYCGTEI--MSLEWECKSDRLLLIGT  211 (458)
Q Consensus       138 ~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~  211 (458)
                      +.++++ .|..  -...+.|++ +.++.+.+.+|  .|+.+|+.+++......   .....  ..+++.  ++.+....-
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~---l~~~~fgeGi~~~--~~~ly~ltw   82 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE---VPPPYFGAGIVAW--RDRLIQLTW   82 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEE--TTEEEEEES
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe---CCCCcceeEEEEe--CCEEEEEEe
Confidence            455566 4543  356899986 55666666654  89999999988654322   22222  334443  566666677


Q ss_pred             CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      .++.+.+||.++.+.+.++....   .-..++  +++..++.+..+             +.|.++|..+.+....+....
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~---~Gwglt--~dg~~L~vSdgs-------------~~l~~iDp~t~~~~~~I~V~~  144 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPG---EGWALT--SDDSHLYMSDGT-------------AVIRKLDPDTLQQVGSIKVTA  144 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSS---CCCEEE--ECSSCEEEECSS-------------SEEEEECTTTCCEEEEEECEE
T ss_pred             eCCEEEEEECCcCcEEEEEeCCC---CceEEe--eCCCEEEEECCC-------------CeEEEEeCCCCeEEEEEEEcc
Confidence            78999999999999998887653   223443  456655555444             499999999999988887643


Q ss_pred             CC---CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------------CCCeEEEEEcCCCCEEEEecC
Q 012699          292 DP---PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------------DSAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       292 ~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~  355 (458)
                      +.   ..++.+.+. +|+..+..-.+..|.+.|..+++.+..+...             ....+.|+++|+++.|+..+.
T Consensus       145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          145 GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            32   245667765 5655544445779999999999988776521             235689999998776665553

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.96  E-value=3.9e-07  Score=86.68  Aligned_cols=269  Identities=11%  Similarity=0.084  Sum_probs=157.1

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCccccccC--CCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC--GTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~  229 (458)
                      +..++.++.|+.+..+|..+++.........+  ...+.+ ...  .++ .+++++.      ++.|..+|.++++.+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            44677778889999999888876532221110  001111 011  134 4555554      78999999999998876


Q ss_pred             ccCCCCCC-----------------------------------ce-eeeeecCCCCeEEEeecccCC-------CCccee
Q 012699          230 LNTTDAFP-----------------------------------SV-LDLKCSPVEPIFVSAAASRRY-------GSSNIY  266 (458)
Q Consensus       230 ~~~~~~~~-----------------------------------~v-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  266 (458)
                      +.......                                   .+ ..+++.+....++.+..+...       +.... 
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y-  270 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW-  270 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT-
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee-
Confidence            65432110                                   00 124555655555554432100       00000 


Q ss_pred             eccceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCC-
Q 012699          267 SWGFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHD-  335 (458)
Q Consensus       267 ~~~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-  335 (458)
                         .+.|..+|.++++.+..++...+.       ....-+...++|+   .++.++.+|.++++|..+++.+...+... 
T Consensus       271 ---~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          271 ---TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             ---TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             ---EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence               137999999999999888764331       1111122334674   57788899999999999998877654321 


Q ss_pred             ------------CCe--------------------------EEEEEcCCCCEEEEec-----------------------
Q 012699          336 ------------SAI--------------------------SSILFGPDETSIFSLG-----------------------  354 (458)
Q Consensus       336 ------------~~v--------------------------~~~~~~~~~~~l~~~~-----------------------  354 (458)
                                  .++                          ..++++|+...++...                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        111                          2357788777776643                       


Q ss_pred             --------------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          355 --------------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       355 --------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                                    .+|.+..||+.+++.. |.....         ..+....+...+..+++++.++.++.+|..+++.
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-W~~~~~---------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-WTKWEK---------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEE-EEEEES---------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceeccCccccCCCCCCeEEEEECCCCCEE-EEecCC---------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                          3578999999876543 332211         1112222334567788899999999999999887


Q ss_pred             ccccCC-CCCcEEEEEECCCCCeEE
Q 012699          421 GMRTLP-HGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       421 ~~~~~~-h~~~v~~~~~~~~~~~l~  444 (458)
                      +.++.. ....-.-+.+..+|++++
T Consensus       498 lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          498 LWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEEeCCCCcEeeeEEEEECCEEEE
Confidence            766552 111112234567777444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.95  E-value=1.4e-06  Score=76.21  Aligned_cols=230  Identities=11%  Similarity=0.029  Sum_probs=138.8

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      .....++|+ ++++++++-..++.|..||.... ....+...   ..+..+++.++++++++......           .
T Consensus        32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~---~~p~gia~~~dG~l~vad~~~~~-----------~   95 (306)
T 2p4o_A           32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGN-QQIHATVE---GKVSGLAFTSNGDLVATGWNADS-----------I   95 (306)
T ss_dssp             CCEEEEEEC-TTSCEEEEETTTTEEEEECTTCC-EEEEEECS---SEEEEEEECTTSCEEEEEECTTS-----------C
T ss_pred             CCcceEEEC-CCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC---CCceeEEEcCCCcEEEEeccCCc-----------c
Confidence            456788998 46777777778899999998764 33323222   46888999999996665533210           2


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeee---------eCCCCCeEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGW---------PAHDSAISSI  341 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~---------~~~~~~v~~~  341 (458)
                      .|..+|..+++......... ......++..+++..+++-..++.|+++|..+++. +...         ...-...+.+
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi  174 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  174 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             eEEEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence            47777877777654443322 22345566666554445444588999999875421 1100         0111234555


Q ss_pred             EEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          342 LFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       342 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                        +|+++.|+. -...+.|..+++.........   ..+.    .......++++++|+++++....+.|.+++..+...
T Consensus       175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~---~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~  245 (306)
T 2p4o_A          175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP---EIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT  245 (306)
T ss_dssp             --EEETTEEEEEETTTTEEEEEEBCTTSCBCCC---EEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE
T ss_pred             --CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc---EEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEE
Confidence              788876554 455789999998742211000   0000    012356799999998877777788999999764321


Q ss_pred             cc-ccCCCCCcEEEEEEC---CCCCeEEEec
Q 012699          421 GM-RTLPHGAAITTVDWH---PTLPMFLTGS  447 (458)
Q Consensus       421 ~~-~~~~h~~~v~~~~~~---~~~~~l~s~~  447 (458)
                      .. ........+++++|.   |+++.|+.++
T Consensus       246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            11 122223568999998   8877555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.95  E-value=2.4e-07  Score=82.07  Aligned_cols=191  Identities=15%  Similarity=0.069  Sum_probs=123.2

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .+...+.++...+++. |+.++.++.+..+|.. ++.....  ......+.++... .++. +..++  +.|..+| .++
T Consensus       134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~--~~~~~~~~~~~~d-~~g~-l~v~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF--KTNDAITSAASIG-KDGT-IYFGS--DKVYAIN-PDG  204 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE--ECSSCCCSCCEEC-TTCC-EEEES--SSEEEEC-TTS
T ss_pred             CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE--ecCCCceeeeEEc-CCCE-EEEEe--CEEEEEC-CCC
Confidence            3444566677777776 5567778999999987 5433211  1123345555554 4444 55555  7899999 777


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      +.........  ..+.++...+++.+.+... +             +.+..+|. +++....+....  ..+..+.+.++
T Consensus       205 ~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~-~-------------~gl~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~  265 (330)
T 3hxj_A          205 TEKWNFYAGY--WTVTRPAISEDGTIYVTSL-D-------------GHLYAINP-DGTEKWRFKTGK--RIESSPVIGNT  265 (330)
T ss_dssp             CEEEEECCSS--CCCSCCEECTTSCEEEEET-T-------------TEEEEECT-TSCEEEEEECSS--CCCSCCEECTT
T ss_pred             cEEEEEccCC--cceeceEECCCCeEEEEcC-C-------------CeEEEECC-CCCEeEEeeCCC--CccccceEcCC
Confidence            7665555433  4577888888876655443 3             37777774 455555554322  22334555655


Q ss_pred             CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      + .|.+++.+|.|..+|. +++.+..+......+.++...+++. |..++.+|.+++...+.
T Consensus       266 g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          266 D-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             S-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             C-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            6 5677788889999996 6777777766666677788877875 66688999999887764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.93  E-value=3.8e-07  Score=86.78  Aligned_cols=284  Identities=8%  Similarity=0.023  Sum_probs=161.6

Q ss_pred             CEEEEEeC-CCcEEEEec-CCCCCCCccccccCC---------CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          160 NNIASASV-DGTVRIWTY-DSSTPASRNATIYCG---------TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       160 ~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      ..++.++. ++.|.-+|. .+++.+.........         .....++..   +..++.++.|+.+..+|..+|+.+.
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence            35555555 677777777 666654221111000         000112222   4567888889999999999999887


Q ss_pred             eccCCCCCC--ceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC------------
Q 012699          229 DLNTTDAFP--SVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP------------  293 (458)
Q Consensus       229 ~~~~~~~~~--~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~------------  293 (458)
                      .........  .+.. .... ++ .++.+......       ..+|.|..+|.++++.+..+......            
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~  210 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAEL-------GVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA  210 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGG-------TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             EecCCCCCccceeccCCEEE-CC-EEEEEecCCcc-------CCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc
Confidence            765432100  1111 1111 33 33333321000       01269999999999998877643211            


Q ss_pred             ------------------------CcEEEEEEccCCCEEEEEecC----------------CeEEEEeCCCCceeeeeeC
Q 012699          294 ------------------------PAITSLCFNHNGKILAASAVD----------------GMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       294 ------------------------~~i~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~  333 (458)
                                              .....++++++...++.++.+                +.|..+|.++++.+..++.
T Consensus       211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~  290 (571)
T 2ad6_A          211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK  290 (571)
T ss_dssp             CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence                                    000235677776777776642                3699999999998877753


Q ss_pred             C--C--------CCeEEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeEEeecCCccc----------CC--------
Q 012699          334 H--D--------SAISSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC----------DP--------  382 (458)
Q Consensus       334 ~--~--------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~--------  382 (458)
                      .  .        .++. +...++|+   .++.++.+|.+.++|..+++..-.........          .+        
T Consensus       291 ~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~  369 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT  369 (571)
T ss_dssp             STTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred             CCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence            2  1        2221 22234674   57788899999999998875543322111000          00        


Q ss_pred             -CCCC-----------CceeEEEEccCCCEEEEEe-------------------------------------CCccEEEE
Q 012699          383 -ESSK-----------SCRHEMALDVNGRRLLVTS-------------------------------------GSVRAPIY  413 (458)
Q Consensus       383 -~~~~-----------~~v~~~~~s~~g~~l~~~~-------------------------------------~~~~i~i~  413 (458)
                       ....           ..-..++++|+..++++..                                     .++.++.|
T Consensus       370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~  449 (571)
T 2ad6_A          370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF  449 (571)
T ss_dssp             CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred             CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence             0000           0013478899888887764                                     24788899


Q ss_pred             EccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          414 QVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       414 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      |+.+++...+... ...+.+..+...+.+++.++.||.|+.||.
T Consensus       450 D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          450 DLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             ECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence            9888766554431 122222222334566777899999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.92  E-value=1.6e-05  Score=70.67  Aligned_cols=242  Identities=9%  Similarity=-0.035  Sum_probs=146.6

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      ....+|.+..++. +|+.+. ...|+..++......   ........+..++|++.++.++++-...+.|..+++.....
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~---~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeE---EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence            3445677766644 444443 456887787654432   12233455789999977777777777788999999887654


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK  306 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  306 (458)
                      ...+....  .....+++.+.+..++.+....            +.|.+.++........+.  ........++++|.+.
T Consensus       108 ~~~~~~~~--~~p~glavd~~~g~ly~~d~~~------------~~I~~~~~dG~~~~~l~~--~~l~~P~~iavdp~~g  171 (349)
T 3v64_C          108 EEVVSTGL--ESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEG  171 (349)
T ss_dssp             EEEECSSC--SCCCEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--TTCSCEEEEEEETTTT
T ss_pred             eEEEeCCC--CCccEEEEecCCCeEEEEcCCC------------CeEEEEcCCCCceEEEEe--CCCCCcceEEEecCcC
Confidence            33332221  3457788887666555444332            489999987544333322  2334578999999766


Q ss_pred             EEEEEec-C-CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          307 ILAASAV-D-GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       307 ~l~~~~~-d-g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      .|+.... . +.|..+++............-...+.|+++|++..|+.+ +..+.|..+|+..........         
T Consensus       172 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---------  242 (349)
T 3v64_C          172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------  242 (349)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------
T ss_pred             eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---------
Confidence            6655443 4 789999886433222222233457899999866665554 457789999987533221110         


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      .....+..+++ ..+.++.+-...+.|..++..+++
T Consensus       243 ~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          243 QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence            11234677888 344444444456788888754443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.91  E-value=6.8e-06  Score=68.53  Aligned_cols=206  Identities=11%  Similarity=0.120  Sum_probs=131.3

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ..+..++|+|.++.++++...++.|...|.. ++....+.... ......+++.+++.++++...+             +
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~-------------~   91 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERD-------------Y   91 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTT-------------T
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCC-------------C
Confidence            5689999997667777778889999999998 77777765432 2467788998888766654333             3


Q ss_pred             eEEEEECCCCce---eEEeec----CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC---Cceeeeee-------CC
Q 012699          272 SLTVWNMKTWKA---MTVLPL----GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITGWP-------AH  334 (458)
Q Consensus       272 ~i~i~d~~~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~-------~~  334 (458)
                      .+.++++.....   .....+    .........++|+|.++.|+++.......+|.+..   ...+..+.       .+
T Consensus        92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~  171 (255)
T 3qqz_A           92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT  171 (255)
T ss_dssp             EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred             cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence            788887765432   233322    12344578999999988787777655555555431   11122211       12


Q ss_pred             CCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCC-cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          335 DSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCS-RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       335 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      ...+.+++++|.. .+++.......+..+|....  +....... ........-.....++|.++|+ |++.++.+.++.
T Consensus       172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYR  248 (255)
T ss_dssp             SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEE
T ss_pred             cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEE
Confidence            3457899999954 45566666788999997743  33222222 1111112234568899999997 555688787777


Q ss_pred             EEc
Q 012699          413 YQV  415 (458)
Q Consensus       413 ~~~  415 (458)
                      +..
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.90  E-value=1.7e-05  Score=71.60  Aligned_cols=242  Identities=9%  Similarity=-0.036  Sum_probs=147.9

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      .-.|.+..+++ +|+.+. ...|+..++.+....   ........+..++|++.++.++++-...+.|..+++.......
T Consensus        78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~---~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred             CCeECCccccc-eeEeec-CccceeeccCCCcEE---EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence            34466666633 444443 457888888765432   1223345678999997677777777778899999998765433


Q ss_pred             eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                      .+....  .....+++.+.+..++.+....            +.|.+.++........+.  ........++++|.+..|
T Consensus       153 ~~~~~~--~~p~glavd~~~g~lY~~d~~~------------~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~l  216 (386)
T 3v65_B          153 VVSTGL--ESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTI  216 (386)
T ss_dssp             EECSSC--SCCCCEEEETTTTEEEEEETTT------------TEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEE
T ss_pred             EEeCCC--CCccEEEEEeCCCeEEEEcCCC------------CeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeE
Confidence            332221  3456788887666555444332            488888887544333332  233457899999977766


Q ss_pred             EEEec-C-CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          309 AASAV-D-GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       309 ~~~~~-d-g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      +.... . +.|..+++............-.....|+++|++..|+.+ +..+.|..+|+..........         ..
T Consensus       217 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---------~~  287 (386)
T 3v65_B          217 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------QG  287 (386)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---------SS
T ss_pred             EEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---------CC
Confidence            65543 3 689999887443332223334457899999866655544 457789999987533221111         11


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      ...+..+++ ..+.++.+-...+.|..++..++...
T Consensus       288 ~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          288 LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence            234677888 44445555556788888885554433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.87  E-value=2.7e-05  Score=68.19  Aligned_cols=230  Identities=11%  Similarity=0.011  Sum_probs=137.8

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC----CceeeeccCCCCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA----KRVVCDLNTTDAF  236 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~~~~~  236 (458)
                      +|+.+. ...|+..|+.+.+...   .......+..++|++.++.++++-..++.|..+++..    ......+..  ..
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~---~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--~~   76 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DI   76 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--SC
T ss_pred             EEEEEC-CCeEEEEECCCcceEe---hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC--CC
Confidence            344443 3568888887765432   2334456789999966677777777789999999876    222222211  11


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC--
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD--  314 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  314 (458)
                      .....+++.+.+..++.+....            +.|.++++........+.  ........++++|.+..|+.....  
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~------------~~I~~~~~~g~~~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~  142 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTP  142 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTT------------TEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred             CCcCEEEEeecCCeEEEEECCC------------CEEEEEeCCCCceEEEEE--CCCCCcceEEeCCCCCEEEEEccCCC
Confidence            3457888887655554443322            489999987644433332  222457899999977666655543  


Q ss_pred             CeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699          315 GMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM  392 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  392 (458)
                      +.|..+++.. .....+ ...-.....++++|++..|+.+ +..+.|..+|+..........       ..........+
T Consensus       143 ~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-------~~~~~~~P~gi  214 (316)
T 1ijq_A          143 AKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSL  214 (316)
T ss_dssp             CEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-------CTTTTSSEEEE
T ss_pred             CeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-------cCCccCCcEEE
Confidence            6899888763 333333 2233467899999877666555 456789999987432221111       01122345677


Q ss_pred             EEccCCCEEEEEeCCccEEEEEccCCC
Q 012699          393 ALDVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       393 ~~s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      ++. .+.++.+-...++|..++..+++
T Consensus       215 av~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          215 AVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            774 34444455556788888875543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.84  E-value=1.2e-05  Score=70.29  Aligned_cols=239  Identities=9%  Similarity=0.034  Sum_probs=138.6

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-C-cE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-G-GI  216 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-~i  216 (458)
                      .+..+... .....++|+++++++++-..++.|..||..+.. .   ........+..+++. ++++++++.... + .|
T Consensus        24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~---~~~~~~~~p~gia~~-~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q---IHATVEGKVSGLAFT-SNGDLVATGWNADSIPV   97 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E---EEEECSSEEEEEEEC-TTSCEEEEEECTTSCEE
T ss_pred             EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E---EEEeCCCCceeEEEc-CCCcEEEEeccCCcceE
Confidence            44445332 457789999999977777788999999876532 1   122234568889998 566655554332 2 47


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-e-------e
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-L-------P  288 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~-------~  288 (458)
                      ..+|..+++......... ......++..+.+..+++....             |.|..+|...++.... .       .
T Consensus        98 ~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~-------------g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYR-------------GAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             EEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTT-------------TEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             EEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCC-------------CeEEEEeCCCCcEeEEEECCcccccc
Confidence            777777776543222211 1223344444444333332222             5888888765421111 0       0


Q ss_pred             cCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          289 LGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      ........+.+  +|++++|+++. ..+.|.+|++.. ++.  ...+.. ......+++.++|+++++....+.|.++|.
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            01111234555  78887776554 467899999874 321  111111 134567899999987777777889999987


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEc---cCCCEEEEEeCCc
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALD---VNGRRLLVTSGSV  408 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~~~  408 (458)
                      . ++ .......      ......+.+++|.   |+++.|++++..+
T Consensus       241 ~-G~-~~~~~~~------~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          241 D-RS-TTIIAQA------EQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             T-CC-EEEEECG------GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             C-CC-EEEEeec------ccccCCceEEEEecccCCCCEEEEECCCC
Confidence            5 22 2111110      0112457899998   8988888776543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=1.2e-06  Score=83.22  Aligned_cols=288  Identities=10%  Similarity=0.019  Sum_probs=160.3

Q ss_pred             CCEEEEEeC-CCcEEEEec-CCCCCCCccccccC---------CCceEEEEEecCCC---eEEEEEcCCCcEEEEEcCCC
Q 012699          159 GNNIASASV-DGTVRIWTY-DSSTPASRNATIYC---------GTEIMSLEWECKSD---RLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       159 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~  224 (458)
                      +..|+.++. ++.|.-+|. .+++.+-.......         ......+++.|.++   .+++.++.|+.|..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            335555665 677777777 66654322111100         00012234432122   23788889999999999999


Q ss_pred             ceeeeccCCCCC--Cceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-------
Q 012699          225 RVVCDLNTTDAF--PSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-------  294 (458)
Q Consensus       225 ~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-------  294 (458)
                      +.+.........  ..+.. ..+ .++ .++.+.....       ...+|.|+.+|.++++.+..+.......       
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e-------~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~  212 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAE-------LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD  212 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGG-------GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred             CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccc-------cCCCCeEEEEECCCCcEEEEEcCCCCccccccccc
Confidence            988765543210  01111 111 133 3333332100       0012699999999999988776432110       


Q ss_pred             -----------------------------cEEEEEEccCCCEEEEEecC----------------CeEEEEeCCCCceee
Q 012699          295 -----------------------------AITSLCFNHNGKILAASAVD----------------GMIHMFDMSAGLQIT  329 (458)
Q Consensus       295 -----------------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~  329 (458)
                                                   .-..+++.++..+++.++.+                +.|..+|.++++.+.
T Consensus       213 ~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W  292 (599)
T 1w6s_A          213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF  292 (599)
T ss_dssp             TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceee
Confidence                                         00135667777788887765                389999999999887


Q ss_pred             eeeCCCC----------CeEEEEEc-CCC---CEEEEecCCCeEEEEeccCCCeeEEeecCCcc-----cC-CC------
Q 012699          330 GWPAHDS----------AISSILFG-PDE---TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF-----CD-PE------  383 (458)
Q Consensus       330 ~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~-~~------  383 (458)
                      .++....          ++. +... .+|   +.++.++.+|.+.++|..+++.+.........     .. ..      
T Consensus       293 ~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~  371 (599)
T 1w6s_A          293 GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD  371 (599)
T ss_dssp             EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred             EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence            7764321          221 2222 467   46778899999999999886654332211100     00 00      


Q ss_pred             -------C-----------CCCceeEEEEccCCCEEEEEe---------------------------------------C
Q 012699          384 -------S-----------SKSCRHEMALDVNGRRLLVTS---------------------------------------G  406 (458)
Q Consensus       384 -------~-----------~~~~v~~~~~s~~g~~l~~~~---------------------------------------~  406 (458)
                             .           ....-..++++|+.+++++..                                       .
T Consensus       372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~  451 (599)
T 1w6s_A          372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG  451 (599)
T ss_dssp             GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred             cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence                   0           001113467888777766532                                       2


Q ss_pred             CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          407 SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       407 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .|.+..||+.+++...+.. +..+..+-.....+.+++.++.||.++.||.
T Consensus       452 ~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~  501 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDS  501 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             cCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEEC
Confidence            3677778887776554432 1111111112234567777899999999885

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.83  E-value=1.6e-06  Score=82.53  Aligned_cols=264  Identities=13%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccC--CCceEE-EEEecCCCeEEEEEc------CCCcEEEEEcCCCceeeecc
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYC--GTEIMS-LEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVCDLN  231 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~  231 (458)
                      +|+.++.|+.+.-+|..+++..........  ...+.+ -..  .++ .+++++      .+|.|+.+|.++|+.+..+.
T Consensus       123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            377778888888888888876532221110  001111 011  134 445544      37999999999999887665


Q ss_pred             CCCCCC-----------------------------------ce-eeeeecCCCCeEEEeecccC-------CCCcceeec
Q 012699          232 TTDAFP-----------------------------------SV-LDLKCSPVEPIFVSAAASRR-------YGSSNIYSW  268 (458)
Q Consensus       232 ~~~~~~-----------------------------------~v-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  268 (458)
                      ......                                   .+ ..+++.+....++.+..+..       .+....   
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y---  276 (599)
T 1w6s_A          200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW---  276 (599)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT---
T ss_pred             CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc---
Confidence            432110                                   00 12445566666665554320       000000   


Q ss_pred             cceeEEEEECCCCceeEEeecCCCCC--------cEEEEEEc-cCC---CEEEEEecCCeEEEEeCCCCceeeeeeCCC-
Q 012699          269 GFASLTVWNMKTWKAMTVLPLGEDPP--------AITSLCFN-HNG---KILAASAVDGMIHMFDMSAGLQITGWPAHD-  335 (458)
Q Consensus       269 ~~g~i~i~d~~~~~~~~~~~~~~~~~--------~i~~~~~~-~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-  335 (458)
                       .+.|..+|.++++.+..++...|..        ++. +... .+|   +.++.++.+|.++++|.++++.+...+... 
T Consensus       277 -~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~  354 (599)
T 1w6s_A          277 -TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT  354 (599)
T ss_dssp             -SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             -cceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence             1489999999999998887655421        121 2222 467   467778999999999999999876654211 


Q ss_pred             ------------CCe--------------------------EEEEEcCCCCEEEEe------------------------
Q 012699          336 ------------SAI--------------------------SSILFGPDETSIFSL------------------------  353 (458)
Q Consensus       336 ------------~~v--------------------------~~~~~~~~~~~l~~~------------------------  353 (458)
                                  .++                          ..++++|+..++++.                        
T Consensus       355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  434 (599)
T 1w6s_A          355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (599)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence                        111                          235666665555442                        


Q ss_pred             ---------c------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          354 ---------G------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       354 ---------~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                               +      .+|.+.-||+.+++.. |......         ....-.+...+.++++++.|+.++.+|.+++
T Consensus       435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-W~~~~~~---------~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG  504 (599)
T 1w6s_A          435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-WEKMERF---------AVWGGTMATAGDLVFYGTLDGYLKARDSDTG  504 (599)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-EEEEESS---------CCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             cceeccCCcCCcccCCCcCeEEEEECCCCCEE-eEecCCC---------CccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence                     1      3477888888876543 3322110         0111112336778888999999999999999


Q ss_pred             CcccccCC-CCCcEEEEEECCCCCe
Q 012699          419 ASGMRTLP-HGAAITTVDWHPTLPM  442 (458)
Q Consensus       419 ~~~~~~~~-h~~~v~~~~~~~~~~~  442 (458)
                      +.+.++.- ......-+.|..+|+.
T Consensus       505 ~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          505 DLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CEEEEeeCCCCcEeccEEEEeCCEE
Confidence            87766542 1111222455677873

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.82  E-value=5.5e-05  Score=68.54  Aligned_cols=237  Identities=10%  Similarity=-0.031  Sum_probs=142.9

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc----eeeeccCCCCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR----VVCDLNTTDAF  236 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~  236 (458)
                      +|+.+. ...|+..++.......   .......+..++|++.++.++++-...+.|+.+++....    ....+..  ..
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~---~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~--~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS--SC
T ss_pred             eeEEec-cceeEEEccCCcceeE---eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC--CC
Confidence            444443 4678888887654332   233456788999996677777777778899999987522    2222221  12


Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--C
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--D  314 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d  314 (458)
                      .....+++.+.+..|+.+....            +.|.+.++........+.  ........++++|.+.+|+....  .
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~------------~~I~~~~~~g~~~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~  224 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTP  224 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTT------------TEEEEECTTTCSEEEEEE--CSSCCEEEEEEETTTTEEEEEECSSS
T ss_pred             CCcccEEEEecCCceEEEECCC------------CeEEEEeCCCCceEEEEe--CCCCCcceEEEecccCeEEEEeCCCC
Confidence            4577888988655555444332            489999988655444443  22345789999997767766553  3


Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                      +.|...++............-.....|+++|++..|+.+ +..+.|..+|+..........       ..........++
T Consensus       225 ~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~l~~P~gl~  297 (400)
T 3p5b_L          225 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSLA  297 (400)
T ss_dssp             CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-------CSSTTSSEEEEE
T ss_pred             CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-------CCCCCCCCEEEE
Confidence            689999987543333333333567899999877766655 446789999987543322211       111123355666


Q ss_pred             EccCCCEEEEEeCCccEEEEEccCCCcccccC
Q 012699          394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~  425 (458)
                      +. .+.++.+-...+.|..++..+++....+.
T Consensus       298 v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          298 VF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             Ee-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            62 33444444556788888866654443333

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.80  E-value=4.3e-06  Score=79.65  Aligned_cols=271  Identities=11%  Similarity=0.131  Sum_probs=155.8

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCcccccc-------CCCceEEEEEe-cCCCe-EEEEEc------CCCcEEEEEcCC
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIY-------CGTEIMSLEWE-CKSDR-LLLIGT------ADGGIKAWNVDA  223 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~-~~~~~-~l~~~~------~dg~i~~wd~~~  223 (458)
                      +..++.++.|+.+.-+|..+++.........       ...++  + .. ..+++ .+++++      .+|.|..+|..+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--I-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--E-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--E-eCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            3467777788889888988887653222111       01111  1 11 01222 566654      378999999999


Q ss_pred             CceeeeccCCCCC---------------------------------------CceeeeeecCCCCeEEEeecccCC-CCc
Q 012699          224 KRVVCDLNTTDAF---------------------------------------PSVLDLKCSPVEPIFVSAAASRRY-GSS  263 (458)
Q Consensus       224 ~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~-~~~  263 (458)
                      |+.+.........                                       ..-..+++.|....++.+..+... ...
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence            9987654432100                                       000124555666666655543110 000


Q ss_pred             c----------eeeccceeEEEEECCCCceeEEeecCCCC--------CcEEEEEEc-cCCC---EEEEEecCCeEEEEe
Q 012699          264 N----------IYSWGFASLTVWNMKTWKAMTVLPLGEDP--------PAITSLCFN-HNGK---ILAASAVDGMIHMFD  321 (458)
Q Consensus       264 ~----------~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~v~d  321 (458)
                      .          +...-.+.|..+|.++++.+..++...|.        .++. +... .+|+   .++.++.+|.++++|
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD  352 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence            0          00000158999999999999988764432        1221 2222 4674   788899999999999


Q ss_pred             CCCCceeeeeeCCCC-------------Ce--------------------------------EEEEEcCCCCEEEEec--
Q 012699          322 MSAGLQITGWPAHDS-------------AI--------------------------------SSILFGPDETSIFSLG--  354 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~-------------~v--------------------------------~~~~~~~~~~~l~~~~--  354 (458)
                      .++++.+..+.....             ++                                ..++++|+...+++..  
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~  432 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH  432 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence            999988766543320             00                                1345666555554432  


Q ss_pred             -------------------------------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699          355 -------------------------------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV  403 (458)
Q Consensus       355 -------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  403 (458)
                                                     .+|.|..||+.+++.. |......         ....-.+...+.++++
T Consensus       433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-W~~~~~~---------~~~~g~~~tagglvf~  502 (582)
T 1flg_A          433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-WEHKEHL---------PLWAGVLATAGNLVFT  502 (582)
T ss_dssp             EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-EEEEESS---------CCCSCCEEETTTEEEE
T ss_pred             cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-EEecCCC---------CCcccceEeCCCEEEE
Confidence                                           3678999999886554 3322110         1111122235678888


Q ss_pred             EeCCccEEEEEccCCCcccccCCCCCc-EEEEEECCCCCeE
Q 012699          404 TSGSVRAPIYQVRGHASGMRTLPHGAA-ITTVDWHPTLPMF  443 (458)
Q Consensus       404 ~~~~~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l  443 (458)
                      ++.|+.++.+|.++++.+.++...... ..-+.|..+|+..
T Consensus       503 g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          503 GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            999999999999999887766532221 1225666788733

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.80  E-value=9.9e-06  Score=77.17  Aligned_cols=285  Identities=12%  Similarity=0.010  Sum_probs=157.6

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCc-------eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTE-------IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT  233 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  233 (458)
                      .++.++.++.|.-+|..+++.+-..........       ...++..   +..++.++.++.|..+|.++|+.+......
T Consensus        70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            444444433477777777765432211110000       0112222   456778888999999999999988776543


Q ss_pred             CCCC--cee-eeeecC---CCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC-------------
Q 012699          234 DAFP--SVL-DLKCSP---VEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP-------------  293 (458)
Q Consensus       234 ~~~~--~v~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-------------  293 (458)
                      ....  .+. ...+..   +++ .++.+.....       ...+|.|.-+|.++++.+.........             
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e-------~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g  219 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE-------FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG  219 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG-------GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccc-------cCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence            3110  011 111111   122 3444332100       001369999999999988766432100             


Q ss_pred             --------------------------CcEEEEEEccCCCEEEEEec--------------------C----CeEEEEeCC
Q 012699          294 --------------------------PAITSLCFNHNGKILAASAV--------------------D----GMIHMFDMS  323 (458)
Q Consensus       294 --------------------------~~i~~~~~~~~~~~l~~~~~--------------------d----g~i~v~d~~  323 (458)
                                                ..-..++++|+..+++++..                    |    +.|..+|..
T Consensus       220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~  299 (582)
T 1flg_A          220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS  299 (582)
T ss_dssp             CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT
T ss_pred             ccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCC
Confidence                                      00023567777778877763                    2    589999999


Q ss_pred             CCceeeeeeC--CC--------CCeEEEEEc-CCCC---EEEEecCCCeEEEEeccCCCeeEEeecCCcc----------
Q 012699          324 AGLQITGWPA--HD--------SAISSILFG-PDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF----------  379 (458)
Q Consensus       324 ~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------  379 (458)
                      +++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+++.+.........          
T Consensus       300 TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~  378 (582)
T 1flg_A          300 SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT  378 (582)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT
T ss_pred             CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC
Confidence            9999887753  32        1221 2221 4674   7888999999999999886654332221100          


Q ss_pred             --------cCCC-------CCC-----------CceeEEEEccCCCEEEEEe----------------------------
Q 012699          380 --------CDPE-------SSK-----------SCRHEMALDVNGRRLLVTS----------------------------  405 (458)
Q Consensus       380 --------~~~~-------~~~-----------~~v~~~~~s~~g~~l~~~~----------------------------  405 (458)
                              ..+.       ...           ..-..++++|+..++++..                            
T Consensus       379 g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  458 (582)
T 1flg_A          379 GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIK  458 (582)
T ss_dssp             CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             CCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeec
Confidence                    0000       000           0012467788776666543                            


Q ss_pred             -----CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          406 -----GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       406 -----~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                           ..|.+..||+.+++...+.... .++..-.....+.+++.++.||.++.||.
T Consensus       459 p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          459 RMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             ESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             CCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence                 2577889999888765544321 12211111224567778999999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.72  E-value=5.1e-05  Score=67.41  Aligned_cols=216  Identities=11%  Similarity=0.039  Sum_probs=134.3

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      ..|+..++............   ..+..++|++.+..++......            +.|..+++........+.  ...
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~~~~~ly~~D~~~------------~~I~r~~~~g~~~~~~~~--~~~  115 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTL------------DRILRANLNGSNVEEVVS--TGL  115 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSC---SCEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSC
T ss_pred             cceEEEeCCCCeeEEeecCC---CceEEEEEeccccEEEEEeccC------------CceEEEecCCCCceEEEe--CCC
Confidence            45888888765544333322   4578899998777666555433            589999988765444332  122


Q ss_pred             CcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCC-CeEEEEeccCCCee
Q 012699          294 PAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSD-GKIIEWSLQNQGQV  370 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~iwd~~~~~~~  370 (458)
                      .....+++++.+..| ++-...+.|.+.++........+...-.....++++|.+..|+.. ... +.|..+++......
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~  195 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR  195 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE
Confidence            335788999865555 444556789999987544333333334567899999965555544 344 77888887643221


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      ..         ..........++++|++..|+.+.. .+.|..+++.+................+++ ..+.++++-...
T Consensus       196 ~~---------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~  265 (349)
T 3v64_C          196 II---------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT  265 (349)
T ss_dssp             ES---------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred             EE---------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence            10         0112345789999998877777654 578999998875433222233456678888 345555555556


Q ss_pred             CcEEEEe
Q 012699          450 HSVQVMS  456 (458)
Q Consensus       450 g~v~iw~  456 (458)
                      +.|...+
T Consensus       266 ~~V~~~~  272 (349)
T 3v64_C          266 KSINSAN  272 (349)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            6676655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=3.1e-05  Score=69.88  Aligned_cols=223  Identities=11%  Similarity=0.057  Sum_probs=138.8

Q ss_pred             EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                      +|+.+. ...|+.+++............   ..+..++|.+.+..++......            +.|..+++.......
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~~~~~ly~~D~~~------------~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTL------------DRILRANLNGSNVEE  152 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECSC---SCEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCCEEE
T ss_pred             eeEeec-CccceeeccCCCcEEEEecCC---CccEEEEEecCCCeEEEEeCCC------------CcEEEEecCCCCcEE
Confidence            344433 356888888776554433322   4578899998777666554433            589999988765444


Q ss_pred             EeecCCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec-CC-CeEEEE
Q 012699          286 VLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG-SD-GKIIEW  362 (458)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iw  362 (458)
                      .+.  ........+++++.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+... .. +.|..+
T Consensus       153 ~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          153 VVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             EEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence            332  112235678898865555 4445567899999875443333333345678999999666655544 34 678888


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      ++..........         ........++++|++..|+.+.. .+.|..+++.+................+++ ..+.
T Consensus       231 ~~dG~~~~~~~~---------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~  300 (386)
T 3v65_B          231 SMDGSGRRIIAD---------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDS  300 (386)
T ss_dssp             ETTSCSCEEEEC---------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTE
T ss_pred             eCCCCCcEEEEE---------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCE
Confidence            876432222110         12234788999998877777654 578999998765433222233456778888 4455


Q ss_pred             eEEEecCCCcEEEEe
Q 012699          442 MFLTGSADHSVQVMS  456 (458)
Q Consensus       442 ~l~s~~~dg~v~iw~  456 (458)
                      ++++-...+.|..++
T Consensus       301 ly~td~~~~~V~~~~  315 (386)
T 3v65_B          301 LYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCeEEEEE
Confidence            666666667777665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.69  E-value=8.9e-06  Score=79.19  Aligned_cols=246  Identities=8%  Similarity=0.003  Sum_probs=135.4

Q ss_pred             CCeEEEEeCCCCCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CC-----CcEEEEE
Q 012699          148 SPISCCRFSSSGNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-AD-----GGIKAWN  220 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~~wd  220 (458)
                      ....++++.+++++++.|+. +..+.+||..+.+..... .......-.+++.. +++++++.|+ .+     ..+.+||
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeC
Confidence            33445778889999999884 458999998766433211 11111112233443 4788888888 34     4799999


Q ss_pred             cCCCceeeeccCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC------
Q 012699          221 VDAKRVVCDLNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED------  292 (458)
Q Consensus       221 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~------  292 (458)
                      ..+++....-...  .....-....+..++..++.++.++.    .........+..||..+............      
T Consensus       321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~----~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  396 (656)
T 1k3i_A          321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS----VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP  396 (656)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC----EEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred             CCCCcceeCCCccccccccccccceeecCCceEEEECCCCc----EEEecCccceeeeecCCcceeecCCccccccccCC
Confidence            9887754321000  00000011223345555555554421    11111224788999987664433221110      


Q ss_pred             -CCcEEEEEEcc-CCCEEEEEecCC-----------eEEEEeCCCCceeeee--eCCCCC-eEEEEEcCCCCEEEEecCC
Q 012699          293 -PPAITSLCFNH-NGKILAASAVDG-----------MIHMFDMSAGLQITGW--PAHDSA-ISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       293 -~~~i~~~~~~~-~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~l~~~~~d  356 (458)
                       ...-.++.+.. ++++++.|+.++           .+.+||..+.+.....  ..+... -.+++..|+++.++.|+.+
T Consensus       397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence             11224455543 677788887543           6888888776544332  112222 2345666899999999864


Q ss_pred             -----------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          357 -----------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       357 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                                 ..+.+||..+..   |...    ..............+.|+|+.++.|+.
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~---W~~~----~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDT---FYKQ----NPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTE---EEEC----CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCcCcCCCCcccceEEEcCCCCc---eeec----CCCCCccccccHhhcCCCcEEEecCCC
Confidence                       468999987642   2111    111111222234556799999999885

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.69  E-value=6.9e-05  Score=62.47  Aligned_cols=207  Identities=10%  Similarity=0.097  Sum_probs=129.3

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEE-EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIAS-ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      +.+.+-.+.+..++|+|++..|++ ...++.|...|.. ++.... ...........+++. .++.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~-i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT-IPLDFVKDLETIEYI-GDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE-EECSSCSSEEEEEEC-STTEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE-EecCCCCChHHeEEe-CCCEEEEEECCCCcEEEE
Confidence            566777778999999998766654 6677888888876 443322 222233567888888 677777776677889999


Q ss_pred             EcCCCce---eeeccC----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC-CCCceeEEee---
Q 012699          220 NVDAKRV---VCDLNT----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM-KTWKAMTVLP---  288 (458)
Q Consensus       220 d~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~-~~~~~~~~~~---  288 (458)
                      ++.....   ......    .........+++.|.+..+.++.....           ..|..|+- ........+.   
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-----------~~i~~~~g~~~~~~l~i~~~~~  165 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-----------IEVYKVNGLLSSNELHISKDKA  165 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-----------EEEEEEESTTCSSCCEEEECHH
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-----------ceEEEEcccccCCceeeecchh
Confidence            8875542   122211    122245689999999987777665431           14444541 1111122211   


Q ss_pred             --cCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCC---------CCeEEEEEcCCCCEEEEecCC
Q 012699          289 --LGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHD---------SAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       289 --~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d  356 (458)
                        .......+..++++|. +.+++.......+.++|.. ++.+..+.-..         .....|+|.++|+..++ +.-
T Consensus       166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~  243 (255)
T 3qqz_A          166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP  243 (255)
T ss_dssp             HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred             hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence              0112235789999996 4555666667889999966 55655554322         25689999999985554 665


Q ss_pred             CeEEEEe
Q 012699          357 GKIIEWS  363 (458)
Q Consensus       357 g~i~iwd  363 (458)
                      +.++.+.
T Consensus       244 n~~y~f~  250 (255)
T 3qqz_A          244 NRFYRFT  250 (255)
T ss_dssp             TEEEEEE
T ss_pred             ceEEEEE
Confidence            6555553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=1.8e-05  Score=72.48  Aligned_cols=249  Identities=8%  Similarity=0.041  Sum_probs=140.7

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      ....++++|.++..|+.+...+.|+.+|+.++.......   .......++++++++.++.+.......        ...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~--------~~~  206 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNND--------RPN  206 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTT--------SEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcc--------cce
Confidence            457788985234445555554889999998876554433   225688999999999665554321000        013


Q ss_pred             EEEEECCCCcee--EEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCC
Q 012699          273 LTVWNMKTWKAM--TVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPA-HDSAISSILFGPDET  348 (458)
Q Consensus       273 i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~  348 (458)
                      +..++.. +...  ..+....   ....++++| ++.++++-..++.|+.++...+........ .......++|+|+++
T Consensus       207 v~~~~~~-g~~~~~~~l~~~~---~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~  282 (430)
T 3tc9_A          207 NYILTRE-SGFKVITELTKGQ---NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN  282 (430)
T ss_dssp             EEEEEGG-GTSCSEEEEEECS---SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred             EEEEeCC-CceeeeeeeccCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence            3334432 2221  2222112   246788999 676666666678999999886654222221 224567899999999


Q ss_pred             EE-EEecCCCeEEEEeccCC-Cee---EEeecC---CcccCC---CCCCCcee-EEEEc--------cCCCEEEEEeCCc
Q 012699          349 SI-FSLGSDGKIIEWSLQNQ-GQV---LWTRNC---SRFCDP---ESSKSCRH-EMALD--------VNGRRLLVTSGSV  408 (458)
Q Consensus       349 ~l-~~~~~dg~i~iwd~~~~-~~~---~~~~~~---~~~~~~---~~~~~~v~-~~~~s--------~~g~~l~~~~~~~  408 (458)
                      +| ++-...+.|..++.... +..   ......   ......   ...-.... .++..        ++|.++++=..++
T Consensus       283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~  362 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH  362 (430)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred             EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence            54 45556788999887642 111   000000   000000   00111233 45553        3455555555667


Q ss_pred             cEEEEEccCCCcccccCC------------------CCCcEEEEEECC-CCCeEEEecCCCcEEEEeCC
Q 012699          409 RAPIYQVRGHASGMRTLP------------------HGAAITTVDWHP-TLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       409 ~i~i~~~~~~~~~~~~~~------------------h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +|+.++..+.  +..+.+                  .-.....++++| ++.++++-.....|+.++++
T Consensus       363 ~I~~i~~~G~--v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          363 CIRILTPQGR--VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEECTTSE--EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCCc--EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            8888874331  111111                  112589999999 46666666667889888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.65  E-value=0.00016  Score=63.21  Aligned_cols=217  Identities=12%  Similarity=0.057  Sum_probs=132.7

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC---ceeEEeecC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW---KAMTVLPLG  290 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~---~~~~~~~~~  290 (458)
                      ..|+..|+.+.+....+...   ..+..++|++.+..++.+....            +.|..+++...   .....+. .
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~~~~~ly~~D~~~------------~~I~~~~~~g~~~~~~~~~~~-~   73 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI-S   73 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSC---SSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEE-C
T ss_pred             CeEEEEECCCcceEehhcCC---CceEEEEEEeCCCEEEEEECCC------------CcEEEEECCCCCCCcccEEEE-e
Confidence            46899999887655544322   4678999998776666555443            58999998761   2222221 1


Q ss_pred             CCCCcEEEEEEccCCCEEE-EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-C-CeEEEEeccCC
Q 012699          291 EDPPAITSLCFNHNGKILA-ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-D-GKIIEWSLQNQ  367 (458)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~  367 (458)
                      ........+++++.+..|+ +-...+.|.++++........+.........+++.|.+..|+.+.. . +.|...++...
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~  153 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence            2223457889987555554 4456789999998754433333333456789999996665554443 3 67888887643


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~  444 (458)
                      ...... .        ..-.....++++|++..|+.+.. .+.|..+++++........  ........+++. .+.+++
T Consensus       154 ~~~~~~-~--------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~  223 (316)
T 1ijq_A          154 DIYSLV-T--------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW  223 (316)
T ss_dssp             CEEEEE-C--------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred             CeEEEE-E--------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEE
Confidence            221111 0        12245789999998888777664 5789999998643221111  123456778885 355666


Q ss_pred             EecCCCcEEEEe
Q 012699          445 TGSADHSVQVMS  456 (458)
Q Consensus       445 s~~~dg~v~iw~  456 (458)
                      +-...+.|..++
T Consensus       224 ~d~~~~~V~~~~  235 (316)
T 1ijq_A          224 TDIINEAIFSAN  235 (316)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EECCCCeEEEEe
Confidence            666667777766

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.63  E-value=2e-05  Score=72.21  Aligned_cols=249  Identities=10%  Similarity=0.065  Sum_probs=143.2

Q ss_pred             ceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          193 EIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       193 ~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ....++|+|. +...|+.+...+.|+.+|..++.......   .......+++++++.++++........         .
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~~~---------~  207 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSDTN---------T  207 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCTTS---------E
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCccc---------c
Confidence            3568899853 33445555444899999998887665443   225688999999999555443211000         1


Q ss_pred             eEEEEECCCCce-eEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee-e-CCCCCeEEEEEcCCC
Q 012699          272 SLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW-P-AHDSAISSILFGPDE  347 (458)
Q Consensus       272 ~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~-~~~~~v~~~~~~~~~  347 (458)
                      .+...+...... ...+.   .......++++| ++.+.++-..++.|+.+|..++.....+ . +....-..++|+|++
T Consensus       208 gv~~~~~~~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          208 GIYLFTRASGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             EEEEECGGGTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             eEEEEECCCCeecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence            233333322111 01111   112346688999 6665555556788999998877652222 2 112233579999999


Q ss_pred             CEEE-EecCCCeEEEEeccCCCe-e----EEeecCCc--ccC---CCCCCCceeEEEE---------ccCCCEEEEEeCC
Q 012699          348 TSIF-SLGSDGKIIEWSLQNQGQ-V----LWTRNCSR--FCD---PESSKSCRHEMAL---------DVNGRRLLVTSGS  407 (458)
Q Consensus       348 ~~l~-~~~~dg~i~iwd~~~~~~-~----~~~~~~~~--~~~---~~~~~~~v~~~~~---------s~~g~~l~~~~~~  407 (458)
                      ++|+ +-...+.|+.++...... .    ........  ...   ....-.....+++         .++|.++++-..+
T Consensus       285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n  364 (433)
T 4hw6_A          285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS  364 (433)
T ss_dssp             SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence            8554 445578899988753211 0    00000000  000   0011234677999         7777777666677


Q ss_pred             ccEEEEEccCCCcccccCC------------------CCCcEEEEEEC-CCCCeEEEecCCCcEEEEeCC
Q 012699          408 VRAPIYQVRGHASGMRTLP------------------HGAAITTVDWH-PTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       408 ~~i~i~~~~~~~~~~~~~~------------------h~~~v~~~~~~-~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ++|+.++..+  .+..+.+                  .-.....|+++ +++.++++=.....|+..+++
T Consensus       365 ~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          365 HTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TEEEEECTTS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEECCCC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8899888643  1111111                  11347899999 677777766677889988764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.61  E-value=0.00018  Score=62.77  Aligned_cols=226  Identities=7%  Similarity=-0.011  Sum_probs=136.3

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV  247 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (458)
                      ...|+..++++...... ........+..++|++.++.++.+-...+.|..+++..+.....+.. ........+++.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~-~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~~l~~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENAT-IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-SGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCE-EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-ECCSCCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEE-EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-CCCCCccEEEEEcC
Confidence            46788899876542111 12222345678999976777777777888999999886632111111 11134667888876


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEEEEeCCCC
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIHMFDMSAG  325 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~  325 (458)
                      +..++.+....            +.|.++++........+  .........++++|.+.+|+....  .+.|..+++...
T Consensus        90 ~g~ly~~d~~~------------~~I~~~~~dG~~~~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  155 (318)
T 3sov_A           90 GEKLYWTDSET------------NRIEVSNLDGSLRKVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS  155 (318)
T ss_dssp             TTEEEEEETTT------------TEEEEEETTSCSCEEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCeEEEEECCC------------CEEEEEECCCCcEEEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence            55554443322            48999998754333322  123345789999997667766653  578999987643


Q ss_pred             ceeeee-eCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699          326 LQITGW-PAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV  403 (458)
Q Consensus       326 ~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  403 (458)
                       ....+ ...-...+.|+++|++..|+.+ +..+.|..+|+......... .        .....+..+++.. +.++.+
T Consensus       156 -~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~--------~~~~~P~glav~~-~~lywt  224 (318)
T 3sov_A          156 -SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-K--------GSLPHPFALTLFE-DILYWT  224 (318)
T ss_dssp             -SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C--------SCCSCEEEEEEET-TEEEEE
T ss_pred             -CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-c--------CCCCCceEEEEeC-CEEEEE
Confidence             33332 2223456899999966666554 45788999998743322111 0        1233456777753 334444


Q ss_pred             EeCCccEEEEEccCCCc
Q 012699          404 TSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       404 ~~~~~~i~i~~~~~~~~  420 (458)
                      -...+.|..++..+++.
T Consensus       225 d~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          225 DWSTHSILACNKYTGEG  241 (318)
T ss_dssp             ETTTTEEEEEETTTCCS
T ss_pred             ecCCCeEEEEECCCCCc
Confidence            44567888888865543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.59  E-value=0.00028  Score=62.02  Aligned_cols=275  Identities=12%  Similarity=0.039  Sum_probs=145.8

Q ss_pred             CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc--ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT--IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      ...+.++.|.+++..++. +.+|.|. ...+.++.=.....  ......+..+.|. + +..++ ++..+.|.. ..+.+
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~~~~-~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NEGWI-VGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-T-TEEEE-EEETTEEEE-ESSTT
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-C-CeEEE-EECCCeEEE-ECCCC
Confidence            457899999887777774 5567653 33333321111111  1123468889887 3 44444 445564443 33334


Q ss_pred             ceeeeccCC-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699          225 RVVCDLNTT-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       225 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  303 (458)
                      +.-...... .....+..+.+.+++..++.+. .             |.|.. ....++.-.... ......+..+++.|
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-------------g~v~~-S~DgG~tW~~~~-~~~~~~~~~~~~~~  172 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-V-------------GAIYR-TKDSGKNWQALV-QEAIGVMRNLNRSP  172 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEET-T-------------CCEEE-ESSTTSSEEEEE-CSCCCCEEEEEECT
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEeC-C-------------ccEEE-EcCCCCCCEEee-cCCCcceEEEEEcC
Confidence            433332221 1113456677666666555443 2             23221 112222222222 23345688999999


Q ss_pred             CCCEEEEEecCCeEEE-EeC--CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699          304 NGKILAASAVDGMIHM-FDM--SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v-~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      ++.+++++. +|.++. .|-  .+.+.+.  ......+..+++.+++..++ .+.+|.+++.+...+  ..+..    ..
T Consensus       173 ~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G--~tW~~----~~  242 (327)
T 2xbg_A          173 SGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS--ENWGE----LL  242 (327)
T ss_dssp             TSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE--EEECC----CB
T ss_pred             CCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC--CeeEe----cc
Confidence            988887765 444444 342  2223332  23456788999999887554 456787776642211  11111    11


Q ss_pred             CC-CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          381 DP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       381 ~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      .+ ......+..+++.+++..++++. ++.+ ++..+.++.-....   .+...+.++.|.+++. +++++.+|.|.-++
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            11 11223578899998887776654 5656 34444443222222   2345678899976555 66677789877654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.58  E-value=0.00011  Score=67.33  Aligned_cols=245  Identities=9%  Similarity=0.000  Sum_probs=138.2

Q ss_pred             CeEEEEeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---C-cEEEEEcC
Q 012699          149 PISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---G-GIKAWNVD  222 (458)
Q Consensus       149 ~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~wd~~  222 (458)
                      ....++|+|+  ...|+.+...+.|+.+|..++....   ..........++++ ++++++++....   . .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~---~~~~~~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI---KTTNIGQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE---ECCCCSCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE---eecCCCCccEEEEC-CCCCEEEEcCCCCcccceEEEEECC
Confidence            4568999984  4455555544889999987665432   22234567899999 566644444321   1 13333332


Q ss_pred             CCcee-eeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEE
Q 012699          223 AKRVV-CDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSL  299 (458)
Q Consensus       223 ~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~  299 (458)
                      .+... ..+.   .......++++| ++.++++....             +.|+.+|..++.. ...+.... ......+
T Consensus       216 ~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~-------------~~V~~~d~~~g~~~~~~~~~~~-~~~~~~i  278 (433)
T 4hw6_A          216 SGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHH-------------AMISSYDPATGTLTEEEVMMDT-KGSNFHI  278 (433)
T ss_dssp             GTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTC-------------SEEEEECTTTCCEEEEEEECSC-CSSCEEE
T ss_pred             CCeecccccc---ccCCCCEEEEeCCCCeEEEEECCC-------------CEEEEEECCCCeEEEEEeccCC-CCCcccE
Confidence            22110 1111   113456788898 55555444333             5899999987766 23333222 2233579


Q ss_pred             EEccCCCEEEEEe-cCCeEEEEeCCC--Cce--eeeeeCC---------------CCCeEEEEE---------cCCCCEE
Q 012699          300 CFNHNGKILAASA-VDGMIHMFDMSA--GLQ--ITGWPAH---------------DSAISSILF---------GPDETSI  350 (458)
Q Consensus       300 ~~~~~~~~l~~~~-~dg~i~v~d~~~--~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~l  350 (458)
                      +|+|++++|+++. ..+.|+.+++..  +..  ...+.+.               -.....+++         .+++.++
T Consensus       279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly  358 (433)
T 4hw6_A          279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY  358 (433)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence            9999999665554 467899988652  221  1111111               123567899         7777777


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCCc-----c----cCCCCCCCceeEEEEc-cCCCEEEEEeCCccEEEEEcc
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCSR-----F----CDPESSKSCRHEMALD-VNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~----~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      ++-...+.|+.++..  +..........     .    ......-..+..++++ ++|.++++=..+++|+.++++
T Consensus       359 vaD~~n~~I~~~~~~--G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          359 FCDRDSHTVRVLTPE--GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEECTT--SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEECCC--CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            777778889999853  23322211100     0    0011122457889999 566655555567788887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.57  E-value=4.6e-05  Score=75.34  Aligned_cols=197  Identities=8%  Similarity=0.030  Sum_probs=109.9

Q ss_pred             CeEEEEeC-CCCCEEEEEeC-CC----cEEEEecCCC-CCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcE
Q 012699          149 PISCCRFS-SSGNNIASASV-DG----TVRIWTYDSS-TPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGI  216 (458)
Q Consensus       149 ~v~~~~~~-~~~~~l~s~~~-dg----~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i  216 (458)
                      .+...+|| |||++||.+.. +|    +|+++|+.++ +....  ..  ......++|+ ++++.|+....+     ..|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~--~~~~~~~~Ws-pDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV--SGTNGEIVWG-PDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE--EEECSCCEEC-SSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc--cCceeeEEEe-cCCCEEEEEEECCCCCCCEE
Confidence            57789999 99998875532 22    5999999987 53211  11  1113467899 455445444443     258


Q ss_pred             EEEEcCCCce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-ee--EEeecCC
Q 012699          217 KAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AM--TVLPLGE  291 (458)
Q Consensus       217 ~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~--~~~~~~~  291 (458)
                      ..+++.++..  ...+..... .....+.|+|+++.++......          ....|.++|+.++. ..  ..+. ..
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~----------~~~~l~~~d~~~~~~~~~~~~l~-~~  317 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSP----------ETAEVHLLDLRKGNAHNTLEIVR-PR  317 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECS----------SCEEEEEEESSSCTTCCCEEESS-CC
T ss_pred             EEEECCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCC----------CCceEEEEECCCCCCCceeEEee-cC
Confidence            8888877642  122222211 3456789999999888766432          12488999998753 12  2222 22


Q ss_pred             CCCcEEEEEEccCCCEEE-EEecC----CeEEEEeCCCCceeee-eeCCCC--CeEEEEEcCCCCEEEEecCCCeEE--E
Q 012699          292 DPPAITSLCFNHNGKILA-ASAVD----GMIHMFDMSAGLQITG-WPAHDS--AISSILFGPDETSIFSLGSDGKII--E  361 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~-~~~~d----g~i~v~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~--i  361 (458)
                      .......+.|+. |+.|+ ....+    ..|..+|+.++..... +..+..  .+..+.+. .+.++++...++..+  +
T Consensus       318 ~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          318 EKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            333445555544 55444 44333    3677788765322222 333433  34455554 233455566677644  4


Q ss_pred             Eec
Q 012699          362 WSL  364 (458)
Q Consensus       362 wd~  364 (458)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.57  E-value=0.0011  Score=68.04  Aligned_cols=378  Identities=13%  Similarity=0.094  Sum_probs=199.6

Q ss_pred             CcceeeeeeccCC------Cceeeeeec-CcceEEeccccccccccceee-eeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           24 SETIKYANIGQTK------NSTLASGVN-EESLLLSTNSSEACATTATHM-GSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        24 ~~~i~~~~~~s~~------~~~l~s~~~-d~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ...|.|+++ .+.      +.++|.|.. |++++|.+...-......... ...|..  +.+.......+|..|..||.+
T Consensus       553 ~~evscl~i-~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~s--i~l~~~~~~~~L~igl~dG~l  629 (1158)
T 3ei3_A          553 EHEVACLDI-TPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRS--ILMTTFESSHYLLCALGDGAL  629 (1158)
T ss_dssp             SSCEEEEEC-CCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEE--EEEEEETTEEEEEEEETTSEE
T ss_pred             CCceEEEEe-ecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcE--EEEEEeCCCcEEEEEeCCCeE
Confidence            447999999 543      468999985 999999998753322111100 012221  222222345778888888887


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE-EEEEeCCCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN-IASASVDGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~v~iw  174 (458)
                      .-+.++........                             ....+-| ..++.-..+...+.. ++.+| +.-..++
T Consensus       630 ~~~~~d~~tg~l~d-----------------------------~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy  678 (1158)
T 3ei3_A          630 FYFGLNIETGLLSD-----------------------------RKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIY  678 (1158)
T ss_dssp             EEEEECTTTCCEEE-----------------------------EEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEE
T ss_pred             EEEEEcCCCCcccc-----------------------------ceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEE
Confidence            66554331110000                             0000111 123322222222222 22222 2333333


Q ss_pred             ecCCCCCCCccccccCCCce-EEEEEecCC-CeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceeeeeecCCCCe
Q 012699          175 TYDSSTPASRNATIYCGTEI-MSLEWECKS-DRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v-~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      .-. +...  ...... .++ ....|+... .+-++..+ ++.+++..++.-+.  ..++...   ..+..++++|..+.
T Consensus       679 ~~~-~~l~--~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~---~Tprri~y~~~~~~  750 (1158)
T 3ei3_A          679 SSN-HKLV--FSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY---ESPRKICYQEVSQC  750 (1158)
T ss_dssp             ESS-SSEE--EEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS---SEEEEEEEEGGGTE
T ss_pred             EcC-CceE--EeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC---CCceEEEEcCCCCE
Confidence            211 1111  011111 122 233344221 23344433 45588888764332  2333333   46888999998887


Q ss_pred             EEEeecccC----CCCcc--------------------------------eeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          251 FVSAAASRR----YGSSN--------------------------------IYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       251 ~~~~~~~~~----~~~~~--------------------------------~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      ++....+..    .+...                                -.....+.|++.|..+++.+..+.+... .
T Consensus       751 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n-E  829 (1158)
T 3ei3_A          751 FGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN-E  829 (1158)
T ss_dssp             EEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT-E
T ss_pred             EEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC-c
Confidence            665543221    00000                                0001236899999999999888887655 3


Q ss_pred             cEEEEEE---ccC-CCEEEEEe----------cCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699          295 AITSLCF---NHN-GKILAASA----------VDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKI  359 (458)
Q Consensus       295 ~i~~~~~---~~~-~~~l~~~~----------~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i  359 (458)
                      .+.+++.   ..+ ..+|++|+          ..|.|++|++..++..... ....+++++++-- +|+.+++.  ..++
T Consensus       830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l  906 (1158)
T 3ei3_A          830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTV  906 (1158)
T ss_dssp             EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEE
T ss_pred             ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEE
Confidence            4555553   222 46888887          3588999998744322111 2336788888743 45444433  4689


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEE
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDW  436 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~  436 (458)
                      ++|++...+.+..  .+..+       ..+..+.....+.++++|.--..+.++..+.........   .+...++++.|
T Consensus       907 ~vy~l~~~~~L~~--~~~~~-------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~  977 (1158)
T 3ei3_A          907 RLYEWTTEKELRT--ECNHY-------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEI  977 (1158)
T ss_dssp             EEEEECTTSCEEE--EEEEC-------CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEE
T ss_pred             EEEECCCCceEEE--Eeecc-------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEE
Confidence            9999986543331  11111       113333444568899999988888887665432222222   35567888888


Q ss_pred             CCCCCeEEEecCCCcEEEEeC
Q 012699          437 HPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       437 ~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      -.++ .++.+..+|.+.+...
T Consensus       978 ld~~-t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          978 LDDD-NFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             EETT-EEEEEETTSEEEEEEE
T ss_pred             EccC-cEEEEcCCCcEEEEec
Confidence            6554 6777899999998764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=8.6e-05  Score=68.15  Aligned_cols=255  Identities=10%  Similarity=0.079  Sum_probs=144.5

Q ss_pred             ceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-CCCceeeeee-------cCCCCeEEEeecccCCCCc
Q 012699          193 EIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-AFPSVLDLKC-------SPVEPIFVSAAASRRYGSS  263 (458)
Q Consensus       193 ~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~  263 (458)
                      ....|+|+|. .++++++....+.|++.|++++.......... .......++|       ++++..++.+.......  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~--  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG--  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG--
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc--
Confidence            4678999963 44555555445779999999877765444322 2346889999       99998666655432000  


Q ss_pred             ceeeccceeEEEEECCC-Ccee-----EEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCC-------CCce--
Q 012699          264 NIYSWGFASLTVWNMKT-WKAM-----TVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMS-------AGLQ--  327 (458)
Q Consensus       264 ~~~~~~~g~i~i~d~~~-~~~~-----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~-------~~~~--  327 (458)
                          .....+.+++... +...     ..+....+   ...++++|+ +.++++-..++.|+.+|+.       ++..  
T Consensus       218 ----~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          218 ----DESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             ----GGEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             ----ccCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence                0002466665433 1221     12211122   356788995 5555556667889999987       4443  


Q ss_pred             ---------eee-ee-CCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCee-----EEeec--CCcccCC---CCC
Q 012699          328 ---------ITG-WP-AHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQV-----LWTRN--CSRFCDP---ESS  385 (458)
Q Consensus       328 ---------~~~-~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~-----~~~~~--~~~~~~~---~~~  385 (458)
                               ... +. +.......|+|+|+|++|+ +-+....|+.++.......     .....  ..-....   ...
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                     111 11 2234568999999999544 4456778988776532211     11110  0000000   011


Q ss_pred             CCcee-EEEEc-------cCCCEEEEEeCCccEEEEEccCCCcccccCC------------------------CCCcEEE
Q 012699          386 KSCRH-EMALD-------VNGRRLLVTSGSVRAPIYQVRGHASGMRTLP------------------------HGAAITT  433 (458)
Q Consensus       386 ~~~v~-~~~~s-------~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~------------------------h~~~v~~  433 (458)
                      -..+. .++..       ++|.++++=..+.+|+.++..+  .+..+.+                        .-.....
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g  448 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG  448 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC--CEEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence            12344 45554       4566666556678899888543  1211111                        1135789


Q ss_pred             EEECCC-CCeEEEecCCCcEEEEeCC
Q 012699          434 VDWHPT-LPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       434 ~~~~~~-~~~l~s~~~dg~v~iw~l~  458 (458)
                      |+++++ +.++++=.....||.++++
T Consensus       449 Iavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          449 LVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEECC
Confidence            999997 7766666677889988763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=6.7e-05  Score=68.68  Aligned_cols=244  Identities=9%  Similarity=0.033  Sum_probs=135.7

Q ss_pred             CeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CC----cEEEEEcC
Q 012699          149 PISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DG----GIKAWNVD  222 (458)
Q Consensus       149 ~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~~wd~~  222 (458)
                      ....|+++| ++..|+.+...+.|+.+|+.++....   ..........++|+ ++++.|+.+.. ++    .+.+.+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWT-HEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeCC
Confidence            457899998 45566666555889999987654321   22244567899999 56664444443 22    23334432


Q ss_pred             CCcee--eeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          223 AKRVV--CDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       223 ~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                       +...  ..+..   ......++++| ++.++++-...             +.|..++...+.......... ......+
T Consensus       214 -g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~-------------~~V~~~~~~~~~~~~~~~~~~-~~~P~gi  275 (430)
T 3tc9_A          214 -SGFKVITELTK---GQNCNGAETHPINGELYFNSWNA-------------GQVFRYDFTTQETTPLFTIQD-SGWEFHI  275 (430)
T ss_dssp             -GTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTT-------------TEEEEEETTTTEEEEEEECSS-SSCCEEE
T ss_pred             -Cceeeeeeecc---CCCceEEEEeCCCCEEEEEECCC-------------CEEEEEECCCCcEEEEEEcCC-CCcceeE
Confidence             2221  12211   13467788999 55555544333             499999998765533333322 2346889


Q ss_pred             EEccCCCEEEEE-ecCCeEEEEeCCC--Cce--eeeeeCC---------------CCCeE-EEEEc--------CCCCEE
Q 012699          300 CFNHNGKILAAS-AVDGMIHMFDMSA--GLQ--ITGWPAH---------------DSAIS-SILFG--------PDETSI  350 (458)
Q Consensus       300 ~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~--~~~~~~~---------------~~~v~-~~~~~--------~~~~~l  350 (458)
                      +|+|++++|++. ...+.|..++...  ++.  ...+.+.               -.... .++..        +++.++
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~ly  355 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY  355 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEE
Confidence            999999965554 4567899988653  211  1111111               01122 45543        345555


Q ss_pred             EEecCCCeEEEEeccCCCeeEEeecCC--ccc-------CCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEcc
Q 012699          351 FSLGSDGKIIEWSLQNQGQVLWTRNCS--RFC-------DPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~-------~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~  416 (458)
                      ++-...+.|+.++..  +.........  ...       .....-..+..++++|+ +.++++-..+.+|+.++++
T Consensus       356 vaD~~n~~I~~i~~~--G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          356 FCDRENHCIRILTPQ--GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEGGGTEEEEECTT--SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCcEEEEECCC--CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            555567788888832  2322221110  000       00111235789999995 5555544456788887764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.54  E-value=0.00075  Score=64.73  Aligned_cols=297  Identities=10%  Similarity=-0.060  Sum_probs=160.5

Q ss_pred             CCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          147 TSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       147 ~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      -...+.|++++++..|+.+ ...+.|...+++....... . .........+++. . +.++++-...+.|...|..+++
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~-~-~~~~~~P~gi~~~-~-~~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV-V-KGSLPHPFALTLF-E-DILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEES-S-SEEEEECTTTCSEEEEESSSCC
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE-E-eCCCCCceEEEEe-C-CEEEEecCCCCEEEEEECCCCc
Confidence            3456889999876666555 4567888888875433211 1 1111223466665 3 3555565667889999988776


Q ss_pred             eeeeccCCCCC-----------------------Cceeeeee-cCCC-CeEEEeec------ccC----CCCcceeeccc
Q 012699          226 VVCDLNTTDAF-----------------------PSVLDLKC-SPVE-PIFVSAAA------SRR----YGSSNIYSWGF  270 (458)
Q Consensus       226 ~~~~~~~~~~~-----------------------~~v~~~~~-~~~~-~~~~~~~~------~~~----~~~~~~~~~~~  270 (458)
                      ....+......                       +.+..+++ .|.. .+-..+..      ++.    ....++.....
T Consensus       246 ~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~  325 (619)
T 3s94_A          246 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARR  325 (619)
T ss_dssp             CCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEES
T ss_pred             ccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcc
Confidence            54433321100                       00111111 1111 11111100      000    00111222223


Q ss_pred             eeEEEEECCCCceeE-EeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC-C
Q 012699          271 ASLTVWNMKTWKAMT-VLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD-E  347 (458)
Q Consensus       271 g~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~  347 (458)
                      +.|+..++....... .+... .-..+..++|++.+..|+.+. ..+.|+.+++........+...-.....+++.+. +
T Consensus       326 ~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~  404 (619)
T 3s94_A          326 TDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR  404 (619)
T ss_dssp             SCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             cceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence            466666666543222 12221 223578899998666665554 4778999998754433333333346678999874 4


Q ss_pred             CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccC
Q 012699          348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       348 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~  425 (458)
                      +..++-+..+.|.+.++.........         ...-..+..+++.|...+|+.+..  ...|...++++........
T Consensus       405 ~lY~tD~~~~~I~v~~~~G~~~~~l~---------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~  475 (619)
T 3s94_A          405 NLYWTDTGTDRIEVTRLNGTMRKILI---------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN  475 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEE---------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             cEEEEeCCCCcEEEEeCCCCeEEEEE---------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe
Confidence            45555566788999998754321111         012345789999997666666543  3677777777654322222


Q ss_pred             CCCCcEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699          426 PHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSL  457 (458)
Q Consensus       426 ~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l  457 (458)
                      ..-...+.+++++++..|+.+. ..+.|...++
T Consensus       476 ~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          476 TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             CCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            3345788999998777666554 4456776665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.54  E-value=0.00032  Score=63.56  Aligned_cols=216  Identities=13%  Similarity=0.064  Sum_probs=134.0

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc----eeEEeec
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK----AMTVLPL  289 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~----~~~~~~~  289 (458)
                      ..|+..++........+..   ...+..++|++.+..++.+....            +.|+.+++....    ....+  
T Consensus        92 ~~I~~i~l~~~~~~~~~~~---~~~~~~l~~d~~~~~lywsD~~~------------~~I~~~~~~g~~~~~~~~~~~--  154 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI--  154 (400)
T ss_dssp             TEEEEECTTSCSCEEEECS---CSCEEEEEEETTTTEEEEEETTT------------TEEEEEEC------CCCEEEE--
T ss_pred             ceeEEEccCCcceeEeccc---cCcceEEeeeeccCceEEEecCC------------CeEEEEEcccCCCCCcceEEE--
Confidence            5788888887655444332   25688999998777666655433            488888886522    22222  


Q ss_pred             CCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccC
Q 012699          290 GEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQN  366 (458)
Q Consensus       290 ~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~  366 (458)
                      .........+++++.+..| ++-...+.|.+.++........+.........|++.|.+..|+....  .+.|...++..
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            2233457889999854444 45455789999998765544444444456789999996666655442  46788888875


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeE
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMF  443 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l  443 (458)
                      ........         ..-..+..++++|++..|+.+.. .+.|..+++++........  +......++++. .+.++
T Consensus       235 ~~~~~~~~---------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~ly  304 (400)
T 3p5b_L          235 VDIYSLVT---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF  304 (400)
T ss_dssp             CSCEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEE
T ss_pred             CccEEEEE---------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEE
Confidence            33222111         12245789999998888887764 5789999987754322221  123455677773 34455


Q ss_pred             EEecCCCcEEEEe
Q 012699          444 LTGSADHSVQVMS  456 (458)
Q Consensus       444 ~s~~~dg~v~iw~  456 (458)
                      ++-...+.|..++
T Consensus       305 wtd~~~~~V~~~~  317 (400)
T 3p5b_L          305 WTDIINEAIFSAN  317 (400)
T ss_dssp             EEESSSCSEEEEE
T ss_pred             EecCCCCeEEEEE
Confidence            5555566777665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.50  E-value=0.00057  Score=67.20  Aligned_cols=241  Identities=11%  Similarity=-0.001  Sum_probs=143.3

Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC----ce
Q 012699          151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK----RV  226 (458)
Q Consensus       151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~  226 (458)
                      .+.+..+.. +|+.+ ....|+..++......   ........+..++|++.++.++++-...+.|+.+++...    ..
T Consensus       388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~  462 (791)
T 3m0c_C          388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY  462 (791)
T ss_dssp             CCEETTSCC-EEEEE-CBSSEEEECTTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred             eeeeccccc-ccccc-cccceeEeeccCCcce---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence            344443332 44443 3456888887655432   223344567899999667777777777888999998753    12


Q ss_pred             eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699          227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK  306 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  306 (458)
                      ...+..  .......|++.+.+..|+.+....            +.|.+.++........+.  ........|+++|.+.
T Consensus       463 ~~vi~~--~l~~P~GLAvD~~~~~LY~tD~~~------------~~I~v~~ldG~~~~~l~~--~~l~~P~gIaVDp~~g  526 (791)
T 3m0c_C          463 DTVISR--DIQAPDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHG  526 (791)
T ss_dssp             EEEECS--SCSCCCEEEEETTTTEEEEEETTT------------TEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTT
T ss_pred             eEEEec--CCCCcceeeeeecCCcEEEEecCC------------CeEEEEeCCCCeEEEEEe--CCCCCcceEEEecCCC
Confidence            222221  124567889988876666555433            599999988654433332  2234578999999866


Q ss_pred             EEEEEec--CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          307 ILAASAV--DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       307 ~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      +|+....  .+.|.+.++........+...-.....|++++.+..|+.+ ...+.|...++...........       .
T Consensus       527 ~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-------~  599 (791)
T 3m0c_C          527 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------E  599 (791)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-------T
T ss_pred             CEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-------C
Confidence            7766553  2689999987544333333334578899999866666655 4467899999875433222111       0


Q ss_pred             CCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcc
Q 012699          384 SSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASG  421 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~  421 (458)
                      ........|++  .+.+|+.+. ..+.|...+..++...
T Consensus       600 ~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          600 KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             TTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcce
Confidence            11123445555  344566555 4577888876555443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.50  E-value=1.3e-05  Score=79.21  Aligned_cols=195  Identities=7%  Similarity=0.049  Sum_probs=113.0

Q ss_pred             ceeeeeec-CCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEE-eecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          238 SVLDLKCS-PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTV-LPLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       238 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                      .+....|+ |+|+.++.......        .....|+++|+.++ +.+.. +.     .....++|+|||+.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G--------~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSG--------NEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSS--------SSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCC--------CceEEEEEEECCCCCEeCCcccc-----CceeeEEEecCCCEEEEEEEC
Confidence            56778999 99998887654321        01136999999988 53211 11     112467899999988877665


Q ss_pred             -----CeEEEEeCCCCce--eeeee-CCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCC-ee--EEeecCCccc
Q 012699          315 -----GMIHMFDMSAGLQ--ITGWP-AHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQG-QV--LWTRNCSRFC  380 (458)
Q Consensus       315 -----g~i~v~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~  380 (458)
                           ..|+++++.+++.  ...+. ........+.|+|||++|+..+.   ...|.++|+.+.. ..  ..      +.
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~------l~  315 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI------VR  315 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE------SS
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE------ee
Confidence                 3688889877642  22332 22344678899999998886553   3468888887642 11  11      10


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEe-CC----ccEEEEEccCCCcccc-cCCCCC--cEEEEEECCCCCeEEEecCCCcE
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTS-GS----VRAPIYQVRGHASGMR-TLPHGA--AITTVDWHPTLPMFLTGSADHSV  452 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~-~~----~~i~i~~~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v  452 (458)
                      .  ........+.|+. |+.|+..+ .+    ..|..+++.+...... +..|..  .+.++.+. .+.++++...||..
T Consensus       316 ~--~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~  391 (751)
T 2xe4_A          316 P--REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLT  391 (751)
T ss_dssp             C--CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEE
T ss_pred             c--CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEE
Confidence            0  1122233444443 55554443 33    3567777664222233 344443  45566665 23456667777865


Q ss_pred             EEE
Q 012699          453 QVM  455 (458)
Q Consensus       453 ~iw  455 (458)
                      +||
T Consensus       392 ~l~  394 (751)
T 2xe4_A          392 RIW  394 (751)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.43  E-value=0.00015  Score=62.25  Aligned_cols=219  Identities=11%  Similarity=0.159  Sum_probs=131.7

Q ss_pred             eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee-ccC----CCCCCceeeeee---cCCCCeEEEeecccCCCCcce
Q 012699          194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD-LNT----TDAFPSVLDLKC---SPVEPIFVSAAASRRYGSSNI  265 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~----~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~  265 (458)
                      ..+..|++.++.++++.-..++|..||...+..... +..    ......+..+.+   .|++.++++..........-.
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            356789855676666666899999999986654333 221    111124678999   688777765331100000000


Q ss_pred             eeccceeEEEEECC---CCceeEEeecCC-----------CCCcEEEEEEccCCCEEEEEecC-CeEEEEeCCCCceeee
Q 012699          266 YSWGFASLTVWNMK---TWKAMTVLPLGE-----------DPPAITSLCFNHNGKILAASAVD-GMIHMFDMSAGLQITG  330 (458)
Q Consensus       266 ~~~~~g~i~i~d~~---~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~  330 (458)
                      ...+...+..||+.   +++......+..           .......++..++|+..++++.. +.|..++.... .+..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence            11223589999999   788777665431           12348899999999999999888 88888887643 3332


Q ss_pred             ee--C----CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-EEeecCCcccCCCCCCCceeE-EEEccCCCEEE
Q 012699          331 WP--A----HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCDPESSKSCRHE-MALDVNGRRLL  402 (458)
Q Consensus       331 ~~--~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~  402 (458)
                      +.  .    .....+.|+++|+|+.|++....|.+..+|+...... ....   +. ........... +..-.+|+.|+
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~---~~-G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVK---IN-GDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECE---ES-SCCCCCTTEEEEEEEEETTEEEE
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccc---cc-CCcccccCcccccccccCCEEEE
Confidence            21  1    1123668999999998888877999999999843210 1000   00 00011122333 34445888855


Q ss_pred             EEe-CCccEEEEEccC
Q 012699          403 VTS-GSVRAPIYQVRG  417 (458)
Q Consensus       403 ~~~-~~~~i~i~~~~~  417 (458)
                      ++. ..+.+.+.+.+.
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            554 456566665544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.43  E-value=0.00028  Score=64.80  Aligned_cols=252  Identities=6%  Similarity=-0.028  Sum_probs=140.0

Q ss_pred             CeEEEEeCCC-CCEEEEE-eCCCcEEEEecCCCCCCCcccccc-CCCceEEEEE-------ecCCCeEEEEEcCCC-c--
Q 012699          149 PISCCRFSSS-GNNIASA-SVDGTVRIWTYDSSTPASRNATIY-CGTEIMSLEW-------ECKSDRLLLIGTADG-G--  215 (458)
Q Consensus       149 ~v~~~~~~~~-~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~l~~~~~dg-~--  215 (458)
                      ....|+|+|. ...|+.+ ...+.|++.|+.++.......... .......++|       + +++..|+++...+ .  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCcc
Confidence            4668999983 4445444 444678888887765432111101 1235789999       8 5666555554443 2  


Q ss_pred             ----EEEEEcCC-Ccee-----eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC------
Q 012699          216 ----IKAWNVDA-KRVV-----CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK------  279 (458)
Q Consensus       216 ----i~~wd~~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~------  279 (458)
                          +.+++... +...     ..+..   ......++++|++..|+.+....            +.|..+|+.      
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~------------g~V~r~d~~~~~~~~  283 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEK------------GQVFRLDLVDYFKTI  283 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTT------------TEEEEECHHHHHHHH
T ss_pred             cCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCC------------CEEEEEecccccccc
Confidence                55665443 2221     11211   12456788899666555544433            589999987      


Q ss_pred             -CCce-----------e-EEeecCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCC--Cce--eeeeeC------CC
Q 012699          280 -TWKA-----------M-TVLPLGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSA--GLQ--ITGWPA------HD  335 (458)
Q Consensus       280 -~~~~-----------~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~--~~~~~~------~~  335 (458)
                       ++..           . ..+... .......++|+|+|++|+.+ +....|+.++...  +..  ...+-+      ..
T Consensus       284 ~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~  362 (496)
T 3kya_A          284 KNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR  362 (496)
T ss_dssp             HTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred             cCceeecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence             4443           1 223322 22345789999999965555 4567888866532  221  011211      10


Q ss_pred             ---------CCeE-EEEEc-------CCCCEEEEecCCCeEEEEeccCCCeeEEeecC-Cc--------c------cCCC
Q 012699          336 ---------SAIS-SILFG-------PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC-SR--------F------CDPE  383 (458)
Q Consensus       336 ---------~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~--------~------~~~~  383 (458)
                               .... .++..       +++.++++=.....|+.++. ++ .+....-. ..        .      ....
T Consensus       363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~  440 (496)
T 3kya_A          363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREV  440 (496)
T ss_dssp             CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred             CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhh
Confidence                     1233 44554       45666666667888999984 33 32222111 00        0      0111


Q ss_pred             CCCCceeEEEEccC-CCEEEEEeCCccEEEEEccCCC
Q 012699          384 SSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       384 ~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      ..-..+..++++++ |.++++=..+.+|+.++++...
T Consensus       441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            12345788999997 6655555567899999987654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.42  E-value=0.00026  Score=61.76  Aligned_cols=220  Identities=9%  Similarity=0.043  Sum_probs=131.1

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGE  291 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~  291 (458)
                      ...|+..+++.......+... .......+.|.+.+..++.+....            +.|..+++....... .+.  .
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~------------~~I~r~~~~g~~~~~~~~~--~   76 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSE------------EAIKRTEFNKTESVQNVVV--S   76 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTT------------TEEEEEETTSSSCCCEEEE--E
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCC------------CcEEEEEccCCCceEEEEc--C
Confidence            457888998876411111111 113466888988766665554433            489999987654221 221  1


Q ss_pred             CCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCCC
Q 012699          292 DPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQG  368 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~  368 (458)
                      .......+++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+...  ..+.|...++....
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  156 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS  156 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence            11235678998755444 4445567899999875433333334445678999999655665554  25778888876432


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                      ......         ..-.....++++|++..|+.+.. .+.|..+++++........+.......+++.. +.++.+-.
T Consensus       157 ~~~~~~---------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~  226 (318)
T 3sov_A          157 RFIIIN---------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW  226 (318)
T ss_dssp             CEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET
T ss_pred             eEEEEE---------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec
Confidence            211110         11234689999998887777764 57899999986543222222345567777753 34555555


Q ss_pred             CCCcEEEEeC
Q 012699          448 ADHSVQVMSL  457 (458)
Q Consensus       448 ~dg~v~iw~l  457 (458)
                      ..+.|..++.
T Consensus       227 ~~~~V~~~~~  236 (318)
T 3sov_A          227 STHSILACNK  236 (318)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEEC
Confidence            5667776664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.40  E-value=5e-06  Score=81.03  Aligned_cols=226  Identities=11%  Similarity=-0.024  Sum_probs=124.5

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC----CceeeeccCCCCCCceeeee
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA----KRVVCDLNTTDAFPSVLDLK  243 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~~~~~~~v~~~~  243 (458)
                      .+.|+..++.+.....   .......+..++|++..+.++++-...+.|+.+++.+    ......+..  .......++
T Consensus       385 ~~~I~~id~~~~~~~~---~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEEC---CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--CC--CCCEE
T ss_pred             ccceEEEeCCCCccee---eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--CCCCcceEE
Confidence            4577777776654332   1222345678899855666666656678999999875    222111111  112355677


Q ss_pred             ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEEEEe
Q 012699          244 CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIHMFD  321 (458)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d  321 (458)
                      +.+.+..|+.+....            +.|.++++........+.  ........++++|.+.+|+....  .+.|.+++
T Consensus       460 vD~~~g~LY~tD~~~------------~~I~v~d~dg~~~~~l~~--~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~  525 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  525 (699)
T ss_dssp             CCCSSSBCEECCTTT------------SCEEEEBSSSCCEEEECC--CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred             EEeeCCcEEEEeccC------------CeEEEEecCCCceEEEEe--CCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence            775554444433222            489999987654433332  22233577899997665655443  26788888


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699          322 MSAGLQITGWPAHDSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR  400 (458)
Q Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  400 (458)
                      +........+...-...+.|+|+|++..| ++-+..+.|..+++......... .      ..........+++..+ .+
T Consensus       526 ~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~-~------~~~~~~~P~glavd~~-~l  597 (699)
T 1n7d_A          526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL-E------DEKRLAHPFSLAVFED-KV  597 (699)
T ss_dssp             SSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC-C------CSSSCSSCCCCEEETT-EE
T ss_pred             CCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE-e------cCCcCCCceEeEEECC-EE
Confidence            76432221112223346789999875544 45556778999998743222211 1      0111123445566543 34


Q ss_pred             EEEEeCCccEEEEEccCCCc
Q 012699          401 LLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       401 l~~~~~~~~i~i~~~~~~~~  420 (458)
                      +.+....++|..++..+++.
T Consensus       598 ywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          598 FWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EEECSTTTCEEEEETTTEEE
T ss_pred             EEEeCCCCeEEEEEccCCCc
Confidence            44444568899998765543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.39  E-value=0.0018  Score=62.15  Aligned_cols=228  Identities=6%  Similarity=-0.020  Sum_probs=142.1

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      +|+.+ ....|+..++++..... ......-..+..++|++.++.++++-..++.|..++++.......+....  ....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcc
Confidence            44443 45678988987654321 11222234678999997777777777788999999987654433333221  3567


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEE
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIH  318 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~  318 (458)
                      .+++.+.+..++.+....            +.|.+.++........+.  ..-.....++++|...+|+....  .+.|.
T Consensus        84 GlAvD~~~~~LY~tD~~~------------~~I~v~~~dG~~~~~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~  149 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGT------------NRIEVSKLDGQHRQVLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKID  149 (628)
T ss_dssp             EEEEETTTTEEEEEETTT------------TEEEEEETTSTTCEEEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             eEEEEeCCCEEEEEECCC------------CEEEEEecCCCcEEEEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEE
Confidence            888887766665554433            589999987644332221  23345789999996666666552  56888


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC
Q 012699          319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN  397 (458)
Q Consensus       319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  397 (458)
                      ..++..... ..+-..-.....|++++++..|+.+ ...+.|...|+.........          .....+..+++.. 
T Consensus       150 r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~----------~~l~~P~glav~~-  217 (628)
T 4a0p_A          150 RAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA----------DDLPHPFGLTQYQ-  217 (628)
T ss_dssp             EEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------ECCSCEEEEEEET-
T ss_pred             EEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee----------ccCCCceEEEEEC-
Confidence            888764433 3333344567899999976666655 45778999998754332111          1122355677754 


Q ss_pred             CCEEEEEe-CCccEEEEEccCCC
Q 012699          398 GRRLLVTS-GSVRAPIYQVRGHA  419 (458)
Q Consensus       398 g~~l~~~~-~~~~i~i~~~~~~~  419 (458)
                       ..|+.+. ..+.|...|..++.
T Consensus       218 -~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          218 -DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             -TEEEEEETTTTEEEEEETTTCC
T ss_pred             -CEEEEecCCCCEEEEEECCCCC
Confidence             3555554 46788888865554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.33  E-value=0.0014  Score=58.12  Aligned_cols=260  Identities=12%  Similarity=0.136  Sum_probs=158.2

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV  247 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (458)
                      +..|.|-|+..+....+ .....    -+.-.+ |..+.++.-. ..++.++|+++...+......+   .|.-=.|-.+
T Consensus        47 ~~~vvIiDl~~~~~~~r-rpi~A----dsAIMn-P~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIR-RPISA----DSAIMN-PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL  116 (494)
T ss_dssp             CCEEEEEETTSTTSCEE-EECCC----SEEEEC-SSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET
T ss_pred             CCeEEEEECCCCCccee-ccccc----ceeeeC-CCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC
Confidence            34788889887655421 11111    223345 4455555543 6799999999999888777654   3444455444


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCC--CCCcEEEEEEccCCCEEEEEec-------CCeE
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV-------DGMI  317 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-------dg~i  317 (458)
                      ..+-+.+ ..              .|.-|++.. ..+.+.+....  ....|.....+++.++++..+-       .|.+
T Consensus       117 ~~l~lVT-~t--------------aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m  181 (494)
T 1bpo_A          117 NTVALVT-DN--------------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (494)
T ss_dssp             TEEEEEC-SS--------------EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred             CeEEEEc-CC--------------eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence            4333333 32              899999974 35556664322  1346888888999998875432       4788


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEcCCC---CEEEEecC---CCeEEEEeccCC---CeeEEeecCCcccCCCCCCCc
Q 012699          318 HMFDMSAGLQITGWPAHDSAISSILFGPDE---TSIFSLGS---DGKIIEWSLQNQ---GQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      .+|..+.+ .-+.+.+|......+...-+.   ..++.+..   .+++.+.++...   ..........-+..++.....
T Consensus       182 QLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DF  260 (494)
T 1bpo_A          182 QLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  260 (494)
T ss_dssp             EEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCC
T ss_pred             EEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCc
Confidence            99998743 455667776655444432111   23333332   378999998643   122222222234455566778


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                      ..++..|+.-..++..+.-|.+++||++++..+..-.-...+|..-+-+....=++.....|.|.
T Consensus       261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             eeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            88999999999999999999999999999876554443344454444443333344444555544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.30  E-value=0.00065  Score=58.37  Aligned_cols=203  Identities=10%  Similarity=0.111  Sum_probs=127.4

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC----C--CCcEEEEEE---ccCCCE
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----D--PPAITSLCF---NHNGKI  307 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~~  307 (458)
                      ....++.|++....+..++.-.            |.|..||...+..... ....    .  ...+..+.|   .|++++
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~------------g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL   79 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYK------------GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRL   79 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTT------------TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred             cCCcCccCcCCCCEEEEEeccC------------CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcE
Confidence            3456788988777777666443            6999999986554443 3332    1  114688999   688877


Q ss_pred             EEEEec-------------CCeEEEEeCC---CCceeeeeeC-------------CCCCeEEEEEcCCCCEEEEecCC-C
Q 012699          308 LAASAV-------------DGMIHMFDMS---AGLQITGWPA-------------HDSAISSILFGPDETSIFSLGSD-G  357 (458)
Q Consensus       308 l~~~~~-------------dg~i~v~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-g  357 (458)
                      +++...             +..|..||+.   +++.+....-             -......++..++|+..++++.- +
T Consensus        80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~  159 (334)
T 2p9w_A           80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP  159 (334)
T ss_dssp             EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred             EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence            776432             5789999999   7776654431             11347899999999999988887 7


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-ccccC--CC---CCcE
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-GMRTL--PH---GAAI  431 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-~~~~~--~h---~~~v  431 (458)
                      .|...+........+....    .........+.++++|+|+.|++....+.+..+|+..... .....  +.   -...
T Consensus       160 ~I~rV~pdG~~~~~~~~~~----~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~  235 (334)
T 2p9w_A          160 AIARVSADGKTVSTFAWES----GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGT  235 (334)
T ss_dssp             EEEEECTTSCCEEEEEECC----CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTE
T ss_pred             eEEEEeCCCCEEeeeeecC----CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCc
Confidence            7776666543222222111    0112234578899999999999888899999999884322 01111  21   1223


Q ss_pred             EEE-EECCCCCe-EEEecCCCcEEEEe
Q 012699          432 TTV-DWHPTLPM-FLTGSADHSVQVMS  456 (458)
Q Consensus       432 ~~~-~~~~~~~~-l~s~~~dg~v~iw~  456 (458)
                      ..+ .--.+|+. |++.+..+.+.+.+
T Consensus       236 dgilp~~~~G~vllV~~~~~~~~~l~S  262 (334)
T 2p9w_A          236 EKIVTVPVGNESVLVGARAPYAISFRS  262 (334)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred             ccccccccCCEEEEEEcCCCCEEEEEC
Confidence            343 33346675 55555566655543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.20  E-value=0.0051  Score=59.05  Aligned_cols=298  Identities=8%  Similarity=-0.014  Sum_probs=160.7

Q ss_pred             CCCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          146 HTSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .-.....|+++++++.|+.+ ...+.|...+++.....   ...........+++. . +.++++-...+.|...|..++
T Consensus       164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v~~~~l~~P~glav~-~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---VIADDLPHPFGLTQY-Q-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECCSCEEEEEEE-T-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---EeeccCCCceEEEEE-C-CEEEEecCCCCEEEEEECCCC
Confidence            34567899999987666555 45678999998764431   122223445678876 3 566666666888999997766


Q ss_pred             ceeeeccCCCCC----------------------Cceeeeeec-CCCCeEEEeec------ccC---CCCcceeecccee
Q 012699          225 RVVCDLNTTDAF----------------------PSVLDLKCS-PVEPIFVSAAA------SRR---YGSSNIYSWGFAS  272 (458)
Q Consensus       225 ~~~~~~~~~~~~----------------------~~v~~~~~~-~~~~~~~~~~~------~~~---~~~~~~~~~~~g~  272 (458)
                      +....+......                      ..+..++.. |.+.+-..+..      ++.   ....++.......
T Consensus       239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~  318 (628)
T 4a0p_A          239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSA  318 (628)
T ss_dssp             CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTE
T ss_pred             CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccce
Confidence            543333211100                      011111111 11211111110      000   0011111122234


Q ss_pred             EEEEECCCCce-eEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeC------CCCCeEEEEEc
Q 012699          273 LTVWNMKTWKA-MTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPA------HDSAISSILFG  344 (458)
Q Consensus       273 i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~  344 (458)
                      |+-..+..... ...+... ....+..++|++.+..|+... ..+.|+.+++........+..      ....+..+++.
T Consensus       319 i~~i~l~~~~~~~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD  397 (628)
T 4a0p_A          319 INRMVIDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID  397 (628)
T ss_dssp             EEEECCCTTCCCCEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred             EEEEecccccCceEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence            54444433221 1112221 224578899999766666654 357888888764433223322      23467899999


Q ss_pred             CCCCEE-EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-Cc--cEEEEEccCCCc
Q 012699          345 PDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SV--RAPIYQVRGHAS  420 (458)
Q Consensus       345 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~--~i~i~~~~~~~~  420 (458)
                      ..++.| ++-+..+.|.+.++..... .....        .....+..+++.|...+|+.+.. ..  .|...++++...
T Consensus       398 ~~~~nLY~td~~~~~I~v~~~~G~~~-~~l~~--------~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~  468 (628)
T 4a0p_A          398 IYSRYIYWTCEATNVINVTRLDGRSV-GVVLK--------GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER  468 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCEE-EEEEE--------CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC
T ss_pred             ccCCeEEEEcCCCCEEEEEECCCCeE-EEEEe--------CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc
Confidence            876655 4666688899999864321 11110        12234789999995555554433 22  577777766543


Q ss_pred             ccccCCCCCcEEEEEECCCCCeEEEec-CCCcEEEEeCC
Q 012699          421 GMRTLPHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSLS  458 (458)
Q Consensus       421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l~  458 (458)
                      .......-..++.++++++++.|+.+. ..+.|...+++
T Consensus       469 ~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d  507 (628)
T 4a0p_A          469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS  507 (628)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            222222345679999999877666554 35677776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.19  E-value=0.00054  Score=59.42  Aligned_cols=191  Identities=13%  Similarity=0.254  Sum_probs=117.5

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC----CCe--EEEeecccCCCCcceeeccceeEEEEE
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV----EPI--FVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      ..+++.....+-+.+||+ .|+.+..+..    ..+..+..-|.    ++.  ++.++...         .+.++|.+|+
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~---------~~~n~l~vf~  105 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRS---------EGKNTIEIYA  105 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECS---------TTCCEEEEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCC---------CCCCeEEEEE
Confidence            345666667789999999 7888777653    34555555552    221  22222211         0015999996


Q ss_pred             C--CCCceeEEeec---C--CCCCcEEEEEE--ccC-CC-EEEEEecCCeEEEEeCC-------CCceeeeeeCCCCCeE
Q 012699          278 M--KTWKAMTVLPL---G--EDPPAITSLCF--NHN-GK-ILAASAVDGMIHMFDMS-------AGLQITGWPAHDSAIS  339 (458)
Q Consensus       278 ~--~~~~~~~~~~~---~--~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~v~d~~-------~~~~~~~~~~~~~~v~  339 (458)
                      +  .++. +..+..   .  .....+..+++  +|. ++ ++++...+|.+..|++.       +.+.++++.. .+.+.
T Consensus       106 iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~E  183 (355)
T 3amr_A          106 IDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTE  183 (355)
T ss_dssp             ECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEE
T ss_pred             ECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcc
Confidence            6  3333 333311   0  11134556777  774 44 68888889999999983       3456777765 45788


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEeccCCC----eeEEeecCCcccCCCCCCCceeEEEE--ccCCC-EEEEEe-CCccEE
Q 012699          340 SILFGPDETSIFSLGSDGKIIEWSLQNQG----QVLWTRNCSRFCDPESSKSCRHEMAL--DVNGR-RLLVTS-GSVRAP  411 (458)
Q Consensus       340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~l~~~~-~~~~i~  411 (458)
                      .++..+....|+.+-.+.-|..++.+...    ..+...      ........+..|++  .++++ +|++++ .+++..
T Consensus       184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~------~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA------DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB------SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe------cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence            89999888899999998776666654221    111111      11122335777777  56666 777777 567999


Q ss_pred             EEEcc
Q 012699          412 IYQVR  416 (458)
Q Consensus       412 i~~~~  416 (458)
                      +||..
T Consensus       258 Vydr~  262 (355)
T 3amr_A          258 IYDRQ  262 (355)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99996

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.16  E-value=0.0029  Score=56.16  Aligned_cols=248  Identities=10%  Similarity=0.064  Sum_probs=126.0

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc--c-ccccCCCceEEEEEecC---CCeEEEEEcCC-----CcE
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR--N-ATIYCGTEIMSLEWECK---SDRLLLIGTAD-----GGI  216 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~-~~~~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~i  216 (458)
                      ..-..++|.|+|+++++ ..+|.|++++  .++....  . ...........++|+|.   ++.+.++-...     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34679999999985555 5669999988  3321100  0 01112356789999954   35554444432     578


Q ss_pred             EEEEcCCCc-----ee-eeccC-CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--------
Q 012699          217 KAWNVDAKR-----VV-CDLNT-TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--------  281 (458)
Q Consensus       217 ~~wd~~~~~-----~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--------  281 (458)
                      ..++...+.     .+ ..+.. .........++|.|++.++++.+.........-.....|.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            888877542     11 11221 1111234689999999877765432110000000112256666666531        


Q ss_pred             ----ceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCe--------EEEEeCCC----------------Cceeeeee
Q 012699          282 ----KAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGM--------IHMFDMSA----------------GLQITGWP  332 (458)
Q Consensus       282 ----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~v~d~~~----------------~~~~~~~~  332 (458)
                          .....+.. ++ .....++|+| ++.++++-.....        |.+.....                ..++..+.
T Consensus       188 ~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          188 GRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                01111111 12 2356789999 5665554332222        33332111                01222332


Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                       +......++| .+|..+++.-..+.|...++..............+.   .....+..+++.|||.++++..
T Consensus       266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence             2234567777 567676666667788888776543211000000111   1124578999999997766554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.15  E-value=0.0049  Score=60.70  Aligned_cols=217  Identities=13%  Similarity=0.060  Sum_probs=129.6

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC----ceeEEee
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW----KAMTVLP  288 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~----~~~~~~~  288 (458)
                      ...|+..++............   ..+..+++.+....++.+....            +.|+.+++...    .....+ 
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~---~~~~gl~~d~~~~~lY~sD~~~------------~~I~~~~l~g~~~~~~~~~vi-  466 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI-  466 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSC---SSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEE-
T ss_pred             ccceeEeeccCCcceeeecCC---CceEEEeecccCCeeEEeeccc------------eeEEEEeccCCCCCcceeEEE-
Confidence            356888888766544333322   4678899998666665554433            48888888753    222222 


Q ss_pred             cCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEecc
Q 012699          289 LGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQ  365 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~  365 (458)
                       .........|++.+.++.|+.. ...+.|.+.++........+.........|++.|.+.+|+....  .+.|...++.
T Consensus       467 -~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d  545 (791)
T 3m0c_C          467 -SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  545 (791)
T ss_dssp             -CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             -ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence             2223446789999877655544 45789999998755443333344456889999997656655543  3678888887


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCC--CCCcEEEEEECCCCCe
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLP--HGAAITTVDWHPTLPM  442 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~  442 (458)
                      .........         .....+..|++++.+..|+.+.. .+.|...++.+.........  .-....+|++..+ .+
T Consensus       546 G~~~~~lv~---------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~l  615 (791)
T 3m0c_C          546 GVDIYSLVT---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KV  615 (791)
T ss_dssp             SCCEEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EE
T ss_pred             CCceEEEEe---------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EE
Confidence            543322111         12245789999988888877754 46899999877643322222  2234556666432 34


Q ss_pred             EEEecCCCcEEEEe
Q 012699          443 FLTGSADHSVQVMS  456 (458)
Q Consensus       443 l~s~~~dg~v~iw~  456 (458)
                      +++-...+.|...+
T Consensus       616 YwtD~~~~~I~~~d  629 (791)
T 3m0c_C          616 FWTDIINEAIFSAN  629 (791)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECCCCEEEEEe
Confidence            44444455665544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.13  E-value=0.00051  Score=60.78  Aligned_cols=141  Identities=16%  Similarity=0.207  Sum_probs=95.8

Q ss_pred             eEEEEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc------------eeeeeeC----
Q 012699          272 SLTVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL------------QITGWPA----  333 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~----  333 (458)
                      .||.-++......+.+....  ....+..+..+|+|++||..+ +..|.|..+..+.            ..+.+.-    
T Consensus        42 ~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~  120 (452)
T 3pbp_A           42 IIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE  120 (452)
T ss_dssp             EEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC
T ss_pred             EEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcc
Confidence            78887877555566666542  223578899999999999875 5579998887321            1122321    


Q ss_pred             --CCCCeEEEEEcC---CCCEEEEecCCCeEEEEeccC-CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe--
Q 012699          334 --HDSAISSILFGP---DETSIFSLGSDGKIIEWSLQN-QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS--  405 (458)
Q Consensus       334 --~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--  405 (458)
                        ...+|..+.|+|   .+..|++-..|+.|++||+.. ...+..................+.+++|.+++-.|.+.+  
T Consensus       121 ~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t  200 (452)
T 3pbp_A          121 VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTT  200 (452)
T ss_dssp             --CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECT
T ss_pred             cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecC
Confidence              256899999999   456899999999999999986 223332211111122333447789999999988787755  


Q ss_pred             CCccEEEE
Q 012699          406 GSVRAPIY  413 (458)
Q Consensus       406 ~~~~i~i~  413 (458)
                      ..|.|+-.
T Consensus       201 ~~GDIYAl  208 (452)
T 3pbp_A          201 EGGDIFAF  208 (452)
T ss_dssp             TSCEEEEE
T ss_pred             CCCCEEEE
Confidence            77877644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.10  E-value=0.014  Score=60.25  Aligned_cols=292  Identities=13%  Similarity=0.143  Sum_probs=146.7

Q ss_pred             CCCeEEEEeCCC------CCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEE
Q 012699          147 TSPISCCRFSSS------GNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKA  218 (458)
Q Consensus       147 ~~~v~~~~~~~~------~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~  218 (458)
                      ...|.|+++.|.      +++++.|.. |++++|+++.+.+...... ........++.+.. .+..+|..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~-L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM-LGGEIIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE-CCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE-CCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            567999999863      368999986 9999999998654432211 11122334444331 24567889999998866


Q ss_pred             EEcC--CCceeee--ccCCCCCCcee----------eeeecCCCCeEEEeecc-------------------cCCCCcce
Q 012699          219 WNVD--AKRVVCD--LNTTDAFPSVL----------DLKCSPVEPIFVSAAAS-------------------RRYGSSNI  265 (458)
Q Consensus       219 wd~~--~~~~~~~--~~~~~~~~~v~----------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~  265 (458)
                      +.++  ++.....  .....  .++.          ++-...+.++++.....                   .......+
T Consensus       632 ~~~d~~tg~l~d~r~~~LG~--~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~  709 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLGT--QPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSL  709 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECCS--SCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred             EEEcCCCCccccceeEEcCC--CceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcE
Confidence            6554  4433211  11010  1111          11111111222111110                   00011112


Q ss_pred             eeccceeEEEEECCCCce--eEEeecCCCCCcEEEEEEccCCCEEEEEecC-----------------------------
Q 012699          266 YSWGFASLTVWNMKTWKA--MTVLPLGEDPPAITSLCFNHNGKILAASAVD-----------------------------  314 (458)
Q Consensus       266 ~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------------------------  314 (458)
                      ....++.++|..+...+.  .+.+++.   ..+..++++|+.+.++++..+                             
T Consensus       710 v~~~~~~LrI~~i~~~~~~~~~~ipL~---~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          710 ALANNSTLTIGTIDEIQKLHIRTVPLY---ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEECSSCEEEEEECCSSSEEEEEEECS---SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             EEEcCCceEEEEecccCCeeEEEEeCC---CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            222334577776654332  3334433   357889999987766554321                             


Q ss_pred             --------------------CeEEEEeCCCCceeeeeeCC-CCCeEEEE---EcCC-CCEEEEec----------CCCeE
Q 012699          315 --------------------GMIHMFDMSAGLQITGWPAH-DSAISSIL---FGPD-ETSIFSLG----------SDGKI  359 (458)
Q Consensus       315 --------------------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~---~~~~-~~~l~~~~----------~dg~i  359 (458)
                                          +.|++.|..+.+.+..+.-. ...+.+++   |..+ ..+|+.|+          ..|.|
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                                23666776666655554422 23344444   3322 46888775          35789


Q ss_pred             EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      .+|++.+. +......       ...++.+++++-- +| +|++|- ...+++|++...+.+.....+-..|..+.....
T Consensus       867 ~vf~v~~~-kL~lv~~-------~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~  935 (1158)
T 3ei3_A          867 VVFQYSDG-KLQTVAE-------KEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTK  935 (1158)
T ss_dssp             EEEEEETT-EEEEEEE-------EEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEE
T ss_pred             EEEEEECC-EEEEEEE-------EEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEecc
Confidence            99999743 2211111       1234556666533 45 444444 367999999765433211111111222222224


Q ss_pred             CCeEEEecCCCcEEEE
Q 012699          440 LPMFLTGSADHSVQVM  455 (458)
Q Consensus       440 ~~~l~s~~~dg~v~iw  455 (458)
                      +.+++.|..-..|.+.
T Consensus       936 ~~~I~vgD~~~Sv~~~  951 (1158)
T 3ei3_A          936 GDFILVGDLMRSVLLL  951 (1158)
T ss_dssp             TTEEEEEESSBCEEEE
T ss_pred             CCEEEEEEhhheEEEE
Confidence            5667777655555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.08  E-value=4.9e-05  Score=74.12  Aligned_cols=218  Identities=13%  Similarity=0.058  Sum_probs=125.4

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC----CceeEEee
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT----WKAMTVLP  288 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~----~~~~~~~~  288 (458)
                      ...|+..++.+......+...   ..+..++|.+.+..|+.+....            +.|+.+++..    ......+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~~~~~Ly~sD~~~------------~~I~~~~~~g~~~~~~~~~~i~  449 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVIS  449 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC---TTCCCCEEETTTTEEEECCTTT------------TSBEEEESCCCCC-CCCCCBCC
T ss_pred             ccceEEEeCCCCcceeeeccC---cceEEEccccccCeEEEEecCC------------CeEEEEecCCCCCCcceEEEEe
Confidence            357888888876655443332   4567889998777776665443            4888888875    22222111


Q ss_pred             cCCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-C-CeEEEEecc
Q 012699          289 LGEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-D-GKIIEWSLQ  365 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~  365 (458)
                        ........+++.+.+..| ++-...+.|.++++........+.........|++.|.+.+|+.... . +.|..+++.
T Consensus       450 --~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          450 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  527 (699)
T ss_dssp             --SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred             --CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence              111234567888654444 44445678999998754433333322345678999996655555443 2 678777775


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCe
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPM  442 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~  442 (458)
                      ........         .........|+++|++..|+++. ..++|..+++.+........  ........|++..+ .+
T Consensus       528 G~~~~~l~---------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~l  597 (699)
T 1n7d_A          528 GVDIYSLV---------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KV  597 (699)
T ss_dssp             SCCCCEES---------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EE
T ss_pred             CCCeeEEE---------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EE
Confidence            43221110         01123467899999877776665 45789999997643222111  11233445566543 45


Q ss_pred             EEEecCCCcEEEEeC
Q 012699          443 FLTGSADHSVQVMSL  457 (458)
Q Consensus       443 l~s~~~dg~v~iw~l  457 (458)
                      +++....+.|..++.
T Consensus       598 ywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          598 FWTDIINEAIFSANR  612 (699)
T ss_dssp             EEECSTTTCEEEEET
T ss_pred             EEEeCCCCeEEEEEc
Confidence            556556677877763

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.08  E-value=0.0022  Score=55.47  Aligned_cols=235  Identities=11%  Similarity=0.062  Sum_probs=117.7

Q ss_pred             CCCEEEEEe-CC-----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCCc-
Q 012699          158 SGNNIASAS-VD-----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAKR-  225 (458)
Q Consensus       158 ~~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~-  225 (458)
                      ++..++.|+ .+     ..+.+||..+.+..... .......-.+++.  .++.+++.|+.+     ..+.+||+.+++ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-SITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-CCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            344555555 22     35778887665432111 1111111122222  356777777754     468999998876 


Q ss_pred             --eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699          226 --VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       226 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  303 (458)
                        ....-.....  .....+...++.+++.++.+...        ....+.+||+.+.+-...-...........+.+  
T Consensus        91 ~~W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~--------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  158 (301)
T 2vpj_A           91 GVWYSVAPMNVR--RGLAGATTLGDMIYVSGGFDGSR--------RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--  158 (301)
T ss_dssp             CCCEEECCCSSC--CBSCEEEEETTEEEEECCBCSSC--------BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--
T ss_pred             CeeEECCCCCCC--ccceeEEEECCEEEEEcccCCCc--------ccceEEEEcCCCCeEEECCCCCCCcccceEEEE--
Confidence              4333222211  11111222256677777654311        014789999987665443332222112222222  


Q ss_pred             CCCEEEEEecC-----CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeE
Q 012699          304 NGKILAASAVD-----GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVL  371 (458)
Q Consensus       304 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  371 (458)
                      +++.++.|+.+     ..+.+||+.+.+....  ++........+.+  +++.++.|+.+     ..+.+||+.+..-..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            66677777654     4689999877644322  2211112223333  56677777764     468899987653211


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH  418 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~  418 (458)
                         .. ..   .........+  .-++++++.|+.+     ..+.+||+.+.
T Consensus       237 ---~~-~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          237 ---VT-SM---TTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ---EC-CC---SSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ---CC-CC---CCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence               11 11   1111111222  2367777777654     45778887664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.06  E-value=0.0096  Score=57.09  Aligned_cols=184  Identities=10%  Similarity=0.090  Sum_probs=108.5

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +.|+..++.................+..+++.+.+..++.+....            +.|..+++........+.  ...
T Consensus       326 ~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~------------~~I~r~~~~g~~~~~v~~--~~~  391 (619)
T 3s94_A          326 TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV------------RAIRRSFIDGSGSQFVVT--AQI  391 (619)
T ss_dssp             SCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSC
T ss_pred             cceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCC------------CeEEEEEcCCCccEEEEE--CCC
Confidence            456666766543221111111224567888888666555554332            488888887644433332  222


Q ss_pred             CcEEEEEEccCCCEEE-EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccCCCee
Q 012699          294 PAITSLCFNHNGKILA-ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQNQGQV  370 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~  370 (458)
                      .....+++++.+..|+ +-+..+.|.+.++........+...-.....|++.|....|+....  ...|...++......
T Consensus       392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~  471 (619)
T 3s94_A          392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV  471 (619)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE
Confidence            3467889987555454 4445688999998754322222233456789999996445544432  356776666543222


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS  420 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~  420 (458)
                      ...         ...-..+..++++++++.|+.+.. .++|..+++++...
T Consensus       472 ~l~---------~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~  513 (619)
T 3s94_A          472 VLV---------NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR  513 (619)
T ss_dssp             EEE---------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred             EEE---------eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence            111         112345788999998888887765 47899999876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.05  E-value=0.0014  Score=56.76  Aligned_cols=230  Identities=11%  Similarity=0.112  Sum_probs=114.5

Q ss_pred             CCeEEEEEc-CC-----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          203 SDRLLLIGT-AD-----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       203 ~~~~l~~~~-~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      ++.+++.|+ .+     ..+.+||+.+++....-....  ..........++.+++.++.+...        ....+.+|
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~~~~--------~~~~~~~~   83 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR--KRRYVASVSLHDRIYVIGGYDGRS--------RLSSVECL   83 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSC--------BCCCEEEE
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh--hhccccEEEECCEEEEEcCCCCCc--------cCceEEEE
Confidence            345666666 22     368899998876543222221  111122222356667777654210        11478999


Q ss_pred             ECCCCc---eeEEeecCCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCC
Q 012699          277 NMKTWK---AMTVLPLGEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPD  346 (458)
Q Consensus       277 d~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~  346 (458)
                      |+.+.+   ....-.+.........+.+  +++.++.|+.+     ..+.+||+.+.+...  .++.......++.+  +
T Consensus        84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~  159 (301)
T 2vpj_A           84 DYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S  159 (301)
T ss_dssp             ETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T
T ss_pred             ECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C
Confidence            998866   3333222221112222222  56677777654     368899987754332  22221222222222  6


Q ss_pred             CCEEEEecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEcc
Q 012699          347 ETSIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVR  416 (458)
Q Consensus       347 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~  416 (458)
                      ++.++.|+.+     ..+.+||+.+..   |.... ...   ..... .++ ...++++++.|+.+     ..+.+||+.
T Consensus       160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~-~~p---~~r~~-~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~  230 (301)
T 2vpj_A          160 GVIYCLGGYDGLNILNSVEKYDPHTGH---WTNVT-PMA---TKRSG-AGV-ALLNDHIYVVGGFDGTAHLSSVEAYNIR  230 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTE---EEEEC-CCS---SCCBS-CEE-EEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CEEEEECCCCCCcccceEEEEeCCCCc---EEeCC-CCC---ccccc-ceE-EEECCEEEEEeCCCCCcccceEEEEeCC
Confidence            6677777654     458889987652   21111 110   11111 112 22367777777654     468999987


Q ss_pred             CCCcc--cccCCCCCcEEEEEECCCCCeEEEecCC-----CcEEEEeC
Q 012699          417 GHASG--MRTLPHGAAITTVDWHPTLPMFLTGSAD-----HSVQVMSL  457 (458)
Q Consensus       417 ~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~l  457 (458)
                      +..-.  ............+.+  ++++++.|+.+     ..|.+||+
T Consensus       231 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          231 TDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             CCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            65311  111111111122222  67777888765     35667765

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.97  E-value=0.0048  Score=53.56  Aligned_cols=186  Identities=9%  Similarity=0.163  Sum_probs=113.9

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC---CCe---EEEEEcC---CCcEEEEEcC--CCce
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK---SDR---LLLIGTA---DGGIKAWNVD--AKRV  226 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~~wd~~--~~~~  226 (458)
                      ...+++.....+-+.+||+ .++.+..   . ....+..+..-|.   +++   ++++...   +++|++|++.  ++. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---~-~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHS---Y-NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEE---E-CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEE---c-cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence            3455666667788999999 5554422   2 2245666665531   122   2333333   5789999773  443 


Q ss_pred             eeeccCC-----CCCCceeeeee--cCC-CC-eEEEeecccCCCCcceeeccceeEEEEECC-------CCceeEEeecC
Q 012699          227 VCDLNTT-----DAFPSVLDLKC--SPV-EP-IFVSAAASRRYGSSNIYSWGFASLTVWNMK-------TWKAMTVLPLG  290 (458)
Q Consensus       227 ~~~~~~~-----~~~~~v~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-------~~~~~~~~~~~  290 (458)
                      +..+...     .....+..+++  +|. +. +++....+             |.+..|++.       +.+.+..+.+.
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-------------G~~~q~~l~~~~~g~~~~~lVR~f~lg  179 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-------------GEFEQYELKADKNGYISGKKVRAFKMN  179 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-------------SEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-------------CeEEEEEEEeCCCCcccceEEEEecCC
Confidence            3333211     11145666777  664 33 34444444             588888772       33556677654


Q ss_pred             CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC-----CCceeeeee-CC-CCCeEEEEE--cCCCC-EEEEec-CCCeE
Q 012699          291 EDPPAITSLCFNHNGKILAASAVDGMIHMFDMS-----AGLQITGWP-AH-DSAISSILF--GPDET-SIFSLG-SDGKI  359 (458)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~~~-~dg~i  359 (458)
                         ..+..++..+....|+++-++.-|..|+.+     +++.+..+. ++ ...+..|++  .++++ +|++++ .++++
T Consensus       180 ---sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          180 ---SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             ---SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             ---CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence               357889999988899999998878888865     244554442 22 236888888  45555 555555 57899


Q ss_pred             EEEecc
Q 012699          360 IEWSLQ  365 (458)
Q Consensus       360 ~iwd~~  365 (458)
                      .+||..
T Consensus       257 ~Vydr~  262 (355)
T 3amr_A          257 AIYDRQ  262 (355)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999997

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.97  E-value=0.0027  Score=54.95  Aligned_cols=229  Identities=10%  Similarity=0.088  Sum_probs=112.8

Q ss_pred             CeEEEEEcCC----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699          204 DRLLLIGTAD----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK  279 (458)
Q Consensus       204 ~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~  279 (458)
                      +.+++.|+.+    ..+..||+.+++....-....  .........-++.+++.++.+...        ....+.+||+.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~--------~~~~~~~~d~~   85 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS--RRCRAGMVYMAGLVFAVGGFNGSL--------RVRTVDSYDPV   85 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEESCBCSSS--------BCCCEEEEETT
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc--ccccceEEEECCEEEEEeCcCCCc--------cccceEEECCC
Confidence            3455555543    357888888776443322111  111111122356677777654311        11378899998


Q ss_pred             CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEE
Q 012699          280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFS  352 (458)
Q Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~  352 (458)
                      +.+-...-...........+.+  +++.++.|+.++     .+.+||+.+.+....  ++........+.+  +++.++.
T Consensus        86 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  161 (302)
T 2xn4_A           86 KDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAV  161 (302)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEE
Confidence            7665443322222112222222  566777777553     588899877543322  2211122222222  5666676


Q ss_pred             ecCC-------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCCc
Q 012699          353 LGSD-------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHAS  420 (458)
Q Consensus       353 ~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~~  420 (458)
                      |+.+       ..+.+||+.+..-   .... ...   ..... .+++ .-++++++.|+.+     ..+.+||+.+..-
T Consensus       162 GG~~~~~~~~~~~~~~yd~~~~~W---~~~~-~~p---~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          162 GGYDVASRQCLSTVECYNATTNEW---TYIA-EMS---TRRSG-AGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             CCEETTTTEECCCEEEEETTTTEE---EEEC-CCS---SCCBS-CEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             eCCCCCCCccccEEEEEeCCCCcE---EECC-CCc---ccccc-ccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            6643       3488888876422   1111 111   11111 1222 2367777777654     4688999876531


Q ss_pred             c--cccCCCCCcEEEEEECCCCCeEEEecCCC-----cEEEEeC
Q 012699          421 G--MRTLPHGAAITTVDWHPTLPMFLTGSADH-----SVQVMSL  457 (458)
Q Consensus       421 ~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~l  457 (458)
                      .  .........-..+.  -++++++.|+.++     .+.+||+
T Consensus       233 ~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          233 RQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             eeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcC
Confidence            1  11111111111222  2677888887654     4777775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.88  E-value=0.0061  Score=52.84  Aligned_cols=228  Identities=8%  Similarity=0.046  Sum_probs=115.9

Q ss_pred             CeEEEEEcC--CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          204 DRLLLIGTA--DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       204 ~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      +.+++.|+.  ...+.+||..+++....-....  ..........++.+++.++.+.         .....+.+||+.+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~---------~~~~~~~~~d~~~~   80 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE--KRRDAACVFWDNVVYILGGSQL---------FPIKRMDCYNVVKD   80 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSC--CCBSCEEEEETTEEEEECCBSS---------SBCCEEEEEETTTT
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCc--ccceeEEEEECCEEEEEeCCCC---------CCcceEEEEeCCCC
Confidence            455666665  3578999998877543322221  1111122223566666766541         01148899999887


Q ss_pred             ceeEEeecCCCCCcEEEEEEccCCCEEEEEecC------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEe
Q 012699          282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      +-...-.+.........+.+  ++++++.|+.+      ..+.+||..+.+....  ++........+.  .+++.++.|
T Consensus        81 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G  156 (306)
T 3ii7_A           81 SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCG  156 (306)
T ss_dssp             EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred             eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEEC
Confidence            65443332222122222222  56677777765      4689999887653322  221112222222  256666666


Q ss_pred             cC---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCC
Q 012699          354 GS---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHA  419 (458)
Q Consensus       354 ~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~  419 (458)
                      +.         -..+.+||..+..   |.... ..    .....-..++. -++++++.|+.+     ..+.+||+.+..
T Consensus       157 G~~~~~~~~~~~~~~~~yd~~~~~---W~~~~-~~----p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          157 GSLGNNVSGRVLNSCEVYDPATET---WTELC-PM----IEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             CEESCTTTCEECCCEEEEETTTTE---EEEEC-CC----SSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             CCCCCCCcccccceEEEeCCCCCe---EEECC-Cc----cchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            64         2448889987652   22111 11    01111112222 267777777653     468889987653


Q ss_pred             --cccccCCCCCcEEEEEECCCCCeEEEecCC-----CcEEEEeC
Q 012699          420 --SGMRTLPHGAAITTVDWHPTLPMFLTGSAD-----HSVQVMSL  457 (458)
Q Consensus       420 --~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~l  457 (458)
                        .+............+.+  ++++++.|+.+     ..+.+||+
T Consensus       228 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          228 WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence              11111111112222333  67788888754     35777775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.88  E-value=0.01  Score=51.37  Aligned_cols=233  Identities=9%  Similarity=0.049  Sum_probs=116.6

Q ss_pred             EEEEEeC--CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----CcEEEEEcCCCceeeeccCCC
Q 012699          161 NIASASV--DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----GGIKAWNVDAKRVVCDLNTTD  234 (458)
Q Consensus       161 ~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~  234 (458)
                      +++.|+.  ...+.+||..+.+...... ......-.+++.  .++.+++.|+.+    ..+.+||+.+++....-....
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRC-PFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCC-CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCC-CCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            4455554  3568888877654321111 111111112222  356777777754    578899998886543322222


Q ss_pred             CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-
Q 012699          235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-  313 (458)
Q Consensus       235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  313 (458)
                        .........-++.+++.++.+....       ....+.+||+.+.+-...-.+.........+.  -++++++.|+. 
T Consensus        91 --~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  159 (306)
T 3ii7_A           91 --PRDSLAACAAEGKIYTSGGSEVGNS-------ALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSL  159 (306)
T ss_dssp             --CCBSCEEEEETTEEEEECCBBTTBS-------CCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEE
T ss_pred             --cccceeEEEECCEEEEECCCCCCCc-------EeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCC
Confidence              1111122223566777776541100       11378999998866544322221111122222  25666677654 


Q ss_pred             --------CCeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeEEeecCCc
Q 012699          314 --------DGMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSR  378 (458)
Q Consensus       314 --------dg~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~  378 (458)
                              -..+.+||+.+.+....  +.........+.+  +++.++.|+.+     ..+.+||+.+..   |.... .
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~-~  233 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE---WKMVS-P  233 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE---EEECC-C
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc---EEECC-C
Confidence                    34588999887643322  2211122222333  56677777653     358889987642   22111 1


Q ss_pred             ccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699          379 FCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH  418 (458)
Q Consensus       379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~  418 (458)
                         ..........+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       234 ---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          234 ---MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ---CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             ---CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence               1111111222222  67777777743     46888888765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.87  E-value=0.0038  Score=54.05  Aligned_cols=193  Identities=10%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             CCeEEEEEcCC-----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          203 SDRLLLIGTAD-----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       203 ~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      ++.+++.|+.+     ..+.+||..+++....-.....  .....+..-++.+++.++.+...        ....+.+||
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~d  130 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLGAAVLNGLLYAVGGFDGST--------GLSSVEAYN  130 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEEEEECSSC--------EEEEEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--ccceEEEEECCEEEEEcCCCCCc--------cCceEEEEe
Confidence            56777777754     3588999988775443222221  11111222356667776654210        114788999


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-------CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCC
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-------GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDET  348 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~  348 (458)
                      +.+.+-...-...........+.  -+++.++.|+.+       ..+.+||+.+.+...  .++........+.+  +++
T Consensus       131 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  206 (302)
T 2xn4_A          131 IKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNL  206 (302)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred             CCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCE
Confidence            98766544332222111122222  256666776643       358899988754332  22222222223333  566


Q ss_pred             EEEEecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----cEEEEEccCC
Q 012699          349 SIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----RAPIYQVRGH  418 (458)
Q Consensus       349 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~~  418 (458)
                      .++.|+.+     ..+.+||..+..-   .... ...   ..... .. +...++++++.|+.++     .+.+||+.+.
T Consensus       207 iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~-~~~---~~r~~-~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          207 LYAVGGHDGPLVRKSVEVYDPTTNAW---RQVA-DMN---MCRRN-AG-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEEECCBSSSSBCCCEEEEETTTTEE---EEEC-CCS---SCCBS-CE-EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEECCCCCCcccceEEEEeCCCCCE---eeCC-CCC---Ccccc-Ce-EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            77777764     3688999876422   1111 110   11111 11 2223677777777543     5888888765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.84  E-value=0.014  Score=51.72  Aligned_cols=248  Identities=8%  Similarity=0.013  Sum_probs=128.7

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC-CCCccc-cccCCCceEEEEEecC---CCeEEEEEcC---C----Cc
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSST-PASRNA-TIYCGTEIMSLEWECK---SDRLLLIGTA---D----GG  215 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~-~~~~~~~v~~~~~~~~---~~~~l~~~~~---d----g~  215 (458)
                      .....|+|.|+|+++++ ..+|.|++++. ++. ...... ..........++++|.   ++.+.++-..   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45679999999975554 56699998873 332 110000 0112346789999954   4555554432   3    56


Q ss_pred             EEEEEcCCC--c-----ee-eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-----
Q 012699          216 IKAWNVDAK--R-----VV-CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-----  282 (458)
Q Consensus       216 i~~wd~~~~--~-----~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-----  282 (458)
                      |..|+...+  .     .+ ..+... .......+.|.|++.++++.+.........-.....|.|.-++....-     
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            777877654  1     11 112211 112346799999998777754321100000001122566666654320     


Q ss_pred             --eeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCC---eEEEEeCCC----------------CceeeeeeCCCCCeEE
Q 012699          283 --AMTVLPLGEDPPAITSLCFNH-NGKILAASAVDG---MIHMFDMSA----------------GLQITGWPAHDSAISS  340 (458)
Q Consensus       283 --~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~v~d~~~----------------~~~~~~~~~~~~~v~~  340 (458)
                        ....+. .++ .....++|+| ++.++++-....   .|.+...-.                ..++..+.........
T Consensus       186 f~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          186 FPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             STTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence              011221 122 2346799999 566555432221   244432110                0122333112345778


Q ss_pred             EEEc-------CCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          341 ILFG-------PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       341 ~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      ++|.       .+|.++++.-..+.|...++...+......   .+..  .....+..+++.|||.++++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~--~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK--NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc--CCCCCeeEEEECCCCcEEEEEe
Confidence            8883       467777776677888888887543322111   1111  1234588999999997666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.80  E-value=0.0093  Score=51.75  Aligned_cols=235  Identities=9%  Similarity=0.009  Sum_probs=117.0

Q ss_pred             CCCEEEEEeCC----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC----C-----CcEEEEEcCCC
Q 012699          158 SGNNIASASVD----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA----D-----GGIKAWNVDAK  224 (458)
Q Consensus       158 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~~wd~~~~  224 (458)
                      ++..++.|+.+    ..+.+||..+.+..... .......-.+++.  .++.+++.|+.    +     ..+.+||+.++
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-DLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-CCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            45566666632    35778887665432111 1111111112222  35677777765    2     46889999887


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      +....-.....  ........-++.+++.++.+...        ....+.+||+.+.+-...-.+.........+.+  +
T Consensus       101 ~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~  168 (308)
T 1zgk_A          101 QWSPCAPMSVP--RNRIGVGVIDGHIYAVGGSHGCI--------HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N  168 (308)
T ss_dssp             EEEECCCCSSC--CBTCEEEEETTEEEEECCEETTE--------ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred             eEeECCCCCcC--ccccEEEEECCEEEEEcCCCCCc--------ccccEEEECCCCCeEeECCCCCccccceEEEEE--C
Confidence            65433222211  11111122256677776654210        013788999987654433222221112222222  5


Q ss_pred             CCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeEE
Q 012699          305 GKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVLW  372 (458)
Q Consensus       305 ~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~  372 (458)
                      +++++.|+.+     ..+.+||+.+.+...  .++........+.+  +++.++.|+.+     ..+.+||+.+..   |
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W  243 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET---W  243 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE---E
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc---E
Confidence            6677777654     468999987754322  22211222223333  56677777664     458899987642   2


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH  418 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~  418 (458)
                      .... .   ...... -..++. -++++++.|+.+     ..+.+||+.+.
T Consensus       244 ~~~~-~---~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          244 TFVA-P---MKHRRS-ALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EECC-C---CSSCCB-SCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EECC-C---CCCCcc-ceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            2111 1   111111 112222 367777777643     35778887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.76  E-value=0.019  Score=50.80  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=61.8

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---CCCCCcEEEEEEccC---CCEEEE
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL---GEDPPAITSLCFNHN---GKILAA  310 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~  310 (458)
                      .....+++.|++.++++-. .             |.|.+++  +++.......   .........++++|+   +..|++
T Consensus        31 ~~P~~ia~~pdG~l~V~e~-~-------------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv   94 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAER-P-------------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA   94 (352)
T ss_dssp             SCEEEEEECTTSCEEEEET-T-------------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred             CCceEEEEcCCCeEEEEeC-C-------------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence            4577899999998666543 2             4888888  3332222111   122356899999998   556665


Q ss_pred             EecC------CeEEEEeCCCCc-----ee-eeeeC---CCCCeEEEEEcCCCCEEEEec
Q 012699          311 SAVD------GMIHMFDMSAGL-----QI-TGWPA---HDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       311 ~~~d------g~i~v~d~~~~~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~  354 (458)
                      +...      +.|..|+...+.     .+ ..+..   .......++|.|+|.+.++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            5442      678888876431     11 22331   112346899999997666643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.74  E-value=0.0068  Score=52.62  Aligned_cols=234  Identities=11%  Similarity=0.044  Sum_probs=113.1

Q ss_pred             CCeEEEEEcCC----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699          203 SDRLLLIGTAD----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       203 ~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      ++.+++.|+.+    ..+.+||..+++....-....  ..........++.+++.++.......    ......+.+||+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~----~~~~~~~~~~d~   97 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV--PRSGLAGCVVGGLLYAVGGRNNSPDG----NTDSSALDCYNP   97 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCEEEETTE----EEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCc--ccccceEEEECCEEEEECCCcCCCCC----CeecceEEEECC
Confidence            45566666532    368889988876544322111  11111112235666666665200000    001137889999


Q ss_pred             CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEE
Q 012699          279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      .+.+....-.+.........+.+  +++.++.|+.+     ..+.+||..+.+...  .++........+.+  +++.++
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv  173 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA  173 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence            87654433222221112222222  56677777644     368899987754322  22221222223333  566777


Q ss_pred             EecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCCcc
Q 012699          352 SLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHASG  421 (458)
Q Consensus       352 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~~~  421 (458)
                      .|+.+     ..+.+||+.+..   |.... ..   .........+.+  ++++++.|+.+     ..+.+||+.+..-.
T Consensus       174 ~GG~~~~~~~~~~~~yd~~~~~---W~~~~-~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          174 VGGFDGTNRLNSAECYYPERNE---WRMIT-AM---NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTE---EEECC-CC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EeCCCCCCcCceEEEEeCCCCe---EeeCC-CC---CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            77654     458888887642   22111 11   111111122222  67777777654     56899998765311


Q ss_pred             --cccCCCCCcEEEEEECCCCCeEEEecCCC-----cEEEEeC
Q 012699          422 --MRTLPHGAAITTVDWHPTLPMFLTGSADH-----SVQVMSL  457 (458)
Q Consensus       422 --~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~l  457 (458)
                        ............+.+  ++++++.|+.++     .+.+||+
T Consensus       245 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          245 FVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             ECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence              111111111122222  567788887543     4667765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.73  E-value=0.0082  Score=52.30  Aligned_cols=196  Identities=11%  Similarity=0.066  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      .+++.|+  ..+..||..+++-.. .................++.+++.++........  .......+..||+.+.+-.
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNK--EDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCS--SSCEEEEEEEEETTTTEEE
T ss_pred             EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCC--ccccccceEEecCCCCeEE
Confidence            3455566  579999999888543 2221111223333344577777777742100000  0000125888999876543


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEecC--------CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEec
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAVD--------GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~  354 (458)
                      ..-...........+.+  +++.++.|+.+        ..+.+||..+.+...  .++........+.  .+++.++.|+
T Consensus        81 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG  156 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGG  156 (315)
T ss_dssp             ECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred             ECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeC
Confidence            32221111111122222  56666777643        468999988754322  2222122222222  3566777776


Q ss_pred             C-C-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----cEEEEEccCC
Q 012699          355 S-D-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----RAPIYQVRGH  418 (458)
Q Consensus       355 ~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~~  418 (458)
                      . +     ..+.+||..+..   |.... ...    ....-.++ ..-++++++.|+.++     .+.+||+.+.
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~---W~~~~-~~p----~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFE---WKELA-PMQ----TARSLFGA-TVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTE---EEECC-CCS----SCCBSCEE-EEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCCCCcccceEEEEeCCCCe---EEECC-CCC----CchhceEE-EEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            5 2     358889887642   22111 111    11111122 223677777777543     5888888765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.69  E-value=0.015  Score=51.03  Aligned_cols=199  Identities=10%  Similarity=0.089  Sum_probs=109.3

Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCC-----CCCcEEEEEEcc--CCC-EE
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGE-----DPPAITSLCFNH--NGK-IL  308 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~-----~~~~i~~~~~~~--~~~-~l  308 (458)
                      ...++...|+|..+++++... .+.........|.|.++|+++. .....+...+     .......+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~-pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKY-PGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEecccc-CCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            355677777766655543111 0000011123489999998742 1222333322     123567777766  353 34


Q ss_pred             EEE-ec--CCeEEEEeCCCCc----eeeeeeCC-CCCeEEEEEcCCCCEEEEecC-----------------CCeEEEEe
Q 012699          309 AAS-AV--DGMIHMFDMSAGL----QITGWPAH-DSAISSILFGPDETSIFSLGS-----------------DGKIIEWS  363 (458)
Q Consensus       309 ~~~-~~--dg~i~v~d~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd  363 (458)
                      +++ ..  +..|.+|++....    .+..+.+. -...+.+++.++|.+.++...                 .|.+..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 33  4577887775432    22333322 236789999999987776541                 23444444


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCccc--ccCCCCCcEEEEEECC-C
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGM--RTLPHGAAITTVDWHP-T  439 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~--~~~~h~~~v~~~~~~~-~  439 (458)
                      ..  + .....         ..-...+.++||||++.|+++.. .++|+.|++.....+.  +........-.+++.+ +
T Consensus       210 ~~--~-~~~~~---------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~  277 (355)
T 3sre_A          210 PN--D-VRVVA---------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT  277 (355)
T ss_dssp             TT--C-CEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred             CC--e-EEEee---------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCC
Confidence            32  1 11110         11123688999999998888764 6789999986432211  1122346778899999 5


Q ss_pred             CCeEEEecCC
Q 012699          440 LPMFLTGSAD  449 (458)
Q Consensus       440 ~~~l~s~~~d  449 (458)
                      |++.+++..+
T Consensus       278 G~lwva~~~~  287 (355)
T 3sre_A          278 GDLWVGCHPN  287 (355)
T ss_dssp             CCEEEEEESC
T ss_pred             CcEEEEecCC
Confidence            9877766544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.62  E-value=0.029  Score=49.07  Aligned_cols=231  Identities=9%  Similarity=0.054  Sum_probs=119.8

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC--CCCCCceeeeeecCCCCeEEEeecccCCCCcceeec
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT--TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSW  268 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (458)
                      ...+.++.|. +.+..+++ +..|.| +...+.++.-.....  ......+..+.+.+ +..++. +..           
T Consensus        35 ~~~~~~v~~~-~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~-----------   98 (327)
T 2xbg_A           35 TATILDMSFI-DRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEP-----------   98 (327)
T ss_dssp             SSCEEEEEES-SSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EET-----------
T ss_pred             CCcEEEEEEC-CCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECC-----------
Confidence            3468888887 44555554 456655 333444432222221  11224678888876 444443 332           


Q ss_pred             cceeEEEEECCCCceeEEeecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeeeeCCCCCeEEEEEcCC
Q 012699          269 GFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAHDSAISSILFGPD  346 (458)
Q Consensus       269 ~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~  346 (458)
                        |.|.. ....++.-...... ..+..+..+.+.+++..++++ .+|.|+.- ...++. ......+...+..+++.|+
T Consensus        99 --g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~  173 (327)
T 2xbg_A           99 --PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPS  173 (327)
T ss_dssp             --TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTT
T ss_pred             --CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCC
Confidence              23322 22223332222211 223457788887777666655 46654332 122322 2222345567899999999


Q ss_pred             CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc--
Q 012699          347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--  424 (458)
Q Consensus       347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--  424 (458)
                      +.+++.+...+..+-+|-. +..-... .       ......+..++++++++.++ ++.+|.+++.+.+.+..-...  
T Consensus       174 ~~~~~~g~~G~~~~S~d~g-G~tW~~~-~-------~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          174 GEYVAVSSRGSFYSTWEPG-QTAWEPH-N-------RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             SCEEEEETTSSEEEEECTT-CSSCEEE-E-------CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBC
T ss_pred             CcEEEEECCCcEEEEeCCC-CCceeEC-C-------CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccC
Confidence            8888776554444444421 1111100 0       12234678899999987665 455677777643222111111  


Q ss_pred             --CCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          425 --LPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       425 --~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                        ..+...+.++++.+++.+++++. +|.|.
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence              12334688999998877666554 66653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.59  E-value=0.01  Score=52.64  Aligned_cols=145  Identities=17%  Similarity=0.234  Sum_probs=96.2

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC--CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK  279 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~  279 (458)
                      .++..++.+- ++.||.-++..+..-+.+....  ....+..+..+|+|.+++..+..              .|.|..+.
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--------------~V~Vv~LP   94 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--------------EIFVMEVP   94 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--------------EEEEEECC
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--------------eEEEEEec
Confidence            4555555543 3678887877544444444432  33467889999999999998876              78887776


Q ss_pred             CCc------------eeEEeecCC----CCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCCC--ceeeeee------
Q 012699          280 TWK------------AMTVLPLGE----DPPAITSLCFNHN---GKILAASAVDGMIHMFDMSAG--LQITGWP------  332 (458)
Q Consensus       280 ~~~------------~~~~~~~~~----~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~--~~~~~~~------  332 (458)
                      .+.            ..+.+.+..    ...+|..+.|+|-   +..|++-..|+.|++||+...  ++. .+.      
T Consensus        95 ~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f  173 (452)
T 3pbp_A           95 WGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF  173 (452)
T ss_dssp             TTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred             CccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence            321            112333321    2467999999994   568999999999999999752  222 221      


Q ss_pred             ---CCCCCeEEEEEcCCCCEEEEe--cCCCeEEEE
Q 012699          333 ---AHDSAISSILFGPDETSIFSL--GSDGKIIEW  362 (458)
Q Consensus       333 ---~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  362 (458)
                         .....|.+++|.+++-.|+..  +..|.|+-.
T Consensus       174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence               223578999999988767664  477877543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.001  Score=57.89  Aligned_cols=147  Identities=10%  Similarity=0.154  Sum_probs=83.3

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec--C-CCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS--P-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT  280 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~  280 (458)
                      +.+++.++.||.|.-.|..+|+...++.... ..++....-.  + ++..++...            ..+|.|..++..+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p------------~~dG~l~a~~~~~   76 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEP------------FGDGNIYYFNAHQ   76 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECC------------STTTEEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEE------------CCCCEEEEEECCC
Confidence            4578999999999999999999988877651 1122111100  1 112222221            2337999999888


Q ss_pred             CceeEEeecCC--CCCcEEE---EEE-c----cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC--C-----eEEEEE
Q 012699          281 WKAMTVLPLGE--DPPAITS---LCF-N----HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS--A-----ISSILF  343 (458)
Q Consensus       281 ~~~~~~~~~~~--~~~~i~~---~~~-~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~-----v~~~~~  343 (458)
                      +.....+....  ...++..   ..+ .    ..+..+++|+.+|.+...|+++|+.+..+.....  .     ..|...
T Consensus        77 G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~  156 (339)
T 2be1_A           77 GLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE  156 (339)
T ss_dssp             EEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred             CcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence            76554443221  1111211   001 0    1355789999999999999999999988864321  0     111111


Q ss_pred             c-----CCCCEEEEecCCCeEEEEe
Q 012699          344 G-----PDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       344 ~-----~~~~~l~~~~~dg~i~iwd  363 (458)
                      .     ..+..++.+..+..+.+.+
T Consensus       157 ~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          157 EKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             --------CCEEEEEEEEEECEECC
T ss_pred             cccccccCCCeEEEecceEEEEEEC
Confidence            0     1234677777666666666

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.53  E-value=0.054  Score=49.82  Aligned_cols=238  Identities=11%  Similarity=0.077  Sum_probs=140.0

Q ss_pred             EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc-----------ee--------------eeeec---CCCCeEEEeecc
Q 012699          206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS-----------VL--------------DLKCS---PVEPIFVSAAAS  257 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-----------v~--------------~~~~~---~~~~~~~~~~~~  257 (458)
                      .+.+|+..|.++++-+.+++.+..+........           +.              .+++.   .||++++.-...
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            467888999999999999998877654332110           00              01111   234444444433


Q ss_pred             cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc--cCCCEEEEEecC-------CeE-----------
Q 012699          258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN--HNGKILAASAVD-------GMI-----------  317 (458)
Q Consensus       258 ~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d-------g~i-----------  317 (458)
                      .            ..|...+++..++.+.+... ....+..+.|-  |+-.|++++++.       |..           
T Consensus       152 n------------~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          152 N------------SRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             T------------TEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             C------------cceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceE
Confidence            2            58888999998888887754 44678888887  677888888652       221           


Q ss_pred             -EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---------------CeEEEEeccCC--------------
Q 012699          318 -HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---------------GKIIEWSLQNQ--------------  367 (458)
Q Consensus       318 -~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~--------------  367 (458)
                       ...|..+.+...++.. .+..-.+...+++++.++.+.+               ..+.++|+..-              
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence             0112222222111111 1223334556778877765542               12666665420              


Q ss_pred             --CeeEEeec----CCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc-----c-------cccCCCC
Q 012699          368 --GQVLWTRN----CSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS-----G-------MRTLPHG  428 (458)
Q Consensus       368 --~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~-----~-------~~~~~h~  428 (458)
                        -.++....    ...+.........++.+.++|||+++++++. +.++.++++.....     +       .....-.
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence              01111110    0011111123345677999999999988776 68999999874211     1       1111234


Q ss_pred             CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          429 AAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       429 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      -.....+|.++|....|.--|..|.-|++
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEec
Confidence            56789999999976667778999999986

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.51  E-value=0.018  Score=59.11  Aligned_cols=242  Identities=12%  Similarity=0.160  Sum_probs=141.6

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV  247 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (458)
                      ...|.|-|+..+....+ ......+    .-.+ |..+.++.- ...++.++|+++...+......+   +|.-=.|-..
T Consensus        47 ~~~vvIidl~~~~~~~r-rpi~Ads----AIMn-P~~~iiALr-ag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~  116 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIR-RPISADS----AIMN-PASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL  116 (1630)
T ss_pred             CceEEEEECCCCCCccc-ccccchh----hccC-CCcceEEEe-cCCeEEEeehHHhhhhcccccCC---CceEEEecCC
Confidence            34788889887654421 1122222    2234 444555544 36799999999988777666553   4555555544


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCC--CCCcEEEEEEccCCCEEEEEe-------cCCeE
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGE--DPPAITSLCFNHNGKILAASA-------VDGMI  317 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-------~dg~i  317 (458)
                      ...-+.+.               ..|.-|++.. ..+.+.+....  ....|.....+++.++++..+       -.|.+
T Consensus       117 ~~l~lVT~---------------~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m  181 (1630)
T 1xi4_A          117 NTVALVTD---------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (1630)
T ss_pred             CeeEEEcC---------------CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence            44433333               2899999964 23433332211  134577778888999887543       35789


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEc--CCCC-EEEEecC---CCeEEEEeccCC---CeeEEeecCCcccCCCCCCCc
Q 012699          318 HMFDMSAGLQITGWPAHDSAISSILFG--PDET-SIFSLGS---DGKIIEWSLQNQ---GQVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~  388 (458)
                      .+|..+.+ .-+.+.+|.+....+...  +... .+..+..   .+.+.|-++...   ..........-+..+......
T Consensus       182 QLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df  260 (1630)
T 1xi4_A          182 QLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  260 (1630)
T ss_pred             eeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence            99998743 334455665544333331  1111 2222211   368999998643   122222222233444455677


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEE
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD  435 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~  435 (458)
                      +.++..|+.-..++..+.-|.++++|+.++..+..-.-...+|...+
T Consensus       261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~  307 (1630)
T 1xi4_A          261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA  307 (1630)
T ss_pred             ceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence            78899999999999999999999999999876544332333443333

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.50  E-value=0.033  Score=48.40  Aligned_cols=190  Identities=10%  Similarity=0.050  Sum_probs=94.0

Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcC-----C------CcEEEEEcCCCceeee
Q 012699          162 IASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTA-----D------GGIKAWNVDAKRVVCD  229 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~-----d------g~i~~wd~~~~~~~~~  229 (458)
                      ++.|+  ..+.+||..+.+-..  ...... ......... .++.+++.|+.     .      ..+..||..+++....
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   82 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM   82 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred             EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence            44555  468888887765431  111111 111222222 46677777773     1      1277889888765432


Q ss_pred             ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699          230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  309 (458)
                      -....  .........-++.+++.++.+...+..     ....+.+||+.+.+-...-.+...... .+++. -+++.++
T Consensus        83 ~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv  153 (315)
T 4asc_A           83 PPLPS--PRCLFGLGEALNSIYVVGGREIKDGER-----CLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYV  153 (315)
T ss_dssp             CCBSS--CEESCEEEEETTEEEEECCEESSTTCC-----BCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEE
T ss_pred             CCCCc--chhceeEEEECCEEEEEeCCcCCCCCc-----ccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEE
Confidence            22211  111111122256666666643211010     114789999988654332222211111 12222 3566777


Q ss_pred             EEec-C-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCCC-----eEEEEeccCC
Q 012699          310 ASAV-D-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSDG-----KIIEWSLQNQ  367 (458)
Q Consensus       310 ~~~~-d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~  367 (458)
                      .|+. +     ..+.+||..+.+...  .++.......++.+  +++.++.|+.++     .+.+||..+.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence            7765 2     468999988754322  22211122223333  566777777644     4788888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.46  E-value=0.036  Score=48.25  Aligned_cols=196  Identities=9%  Similarity=0.061  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                      .+++.|+.  .+..||..+++... .................++.+++.|+........  ...-...+..||..+.+-.
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~~~~~~~d~~~~~W~   91 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENK--DQPLQSYFFQLDNVSSEWV   91 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC---------CCCBEEEEEETTTTEEE
T ss_pred             hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCcccc--CCCccccEEEEeCCCCcEE
Confidence            34444543  48899999887544 2211111222333344567777777632100000  0000124788998876544


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEecC-------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecC
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAVD-------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGS  355 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~  355 (458)
                      ..-.............+  +++.++.|+.+       ..+.+||..+.+....  ++........+.  .+++.++.|+.
T Consensus        92 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~  167 (318)
T 2woz_A           92 GLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGK  167 (318)
T ss_dssp             ECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCE
T ss_pred             ECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCC
Confidence            33222211111222222  56677777754       3588899887543322  111111112222  46667777764


Q ss_pred             ------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699          356 ------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH  418 (458)
Q Consensus       356 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~  418 (458)
                            -..+.+||..+..   |.... ...    ....-.+++ .-++++++.|+.+     ..+.+||+.+.
T Consensus       168 ~~~~~~~~~~~~yd~~~~~---W~~~~-~~p----~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGD---WKDLA-PMK----TPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTE---EEEEC-CCS----SCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCCCCccceEEEEcCCCCE---EEECC-CCC----CCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCC
Confidence                  2358899987653   22111 110    111111222 2367777777653     35778888765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.46  E-value=0.064  Score=49.34  Aligned_cols=211  Identities=9%  Similarity=0.073  Sum_probs=122.5

Q ss_pred             CCeEEEEEc-CCCcEEEEEcCCCceeeeccCCCCCCceeeeeec--CCCCeEEEeecccC---CCCcce--ee-ccceeE
Q 012699          203 SDRLLLIGT-ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS--PVEPIFVSAAASRR---YGSSNI--YS-WGFASL  273 (458)
Q Consensus       203 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~---~~~~~~--~~-~~~g~i  273 (458)
                      ++++|+.-. .+..|...+++..++-..+..+.. ..+..+.+.  |+..+++..+....   .....+  .. ..-+..
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~-~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f  219 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNV-QAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY  219 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC-SCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCC-cCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence            356666655 467888899988887766655443 467777776  68888888776532   100111  00 000345


Q ss_pred             EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC---------------eEEEEe-----------------
Q 012699          274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG---------------MIHMFD-----------------  321 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~v~d-----------------  321 (458)
                      ...|..+.+....+...+.   .......+++++.++.+.+.               .+.+++                 
T Consensus       220 ~~iD~~tm~v~~Qv~v~gn---ld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~  296 (638)
T 3sbq_A          220 NAIDAETMEMAFQVIVDGN---LDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG  296 (638)
T ss_dssp             EEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             EEEcCCccEEEEEEEcCCC---hhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence            5567777666655544432   33455577777777664321               244444                 


Q ss_pred             --------CCC----CceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEee---cCCcccCCCCC
Q 012699          322 --------MSA----GLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTR---NCSRFCDPESS  385 (458)
Q Consensus       322 --------~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~  385 (458)
                              .+.    +..+..+-.-......+..+|||++++.++. +.++.++|+++........   ...........
T Consensus       297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~  376 (638)
T 3sbq_A          297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL  376 (638)
T ss_dssp             TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred             CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence                    332    1111111111234456889999999887765 8899999998532211000   00001111224


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      .......+|.++|.-..+-.-|.+|.-|++..
T Consensus       377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            56678899999995555555799999999964

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.43  E-value=0.0099  Score=54.58  Aligned_cols=109  Identities=12%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeC------CCCCeEEEEEcCC---CCEEEEecC--------
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPA------HDSAISSILFGPD---ETSIFSLGS--------  355 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~--------  355 (458)
                      ....|+|.|+|+++++-...+.|++++..+++.  +..+..      .......|+|+|+   +..|+.+..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            468999999998776644334799888655543  222221      2456789999995   445554432        


Q ss_pred             -----CCeEEEEeccCCC-eeEEeecC-CcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          356 -----DGKIIEWSLQNQG-QVLWTRNC-SRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       356 -----dg~i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                           ...|.-++..... ........ ..+.  ....+....++|.|||.+.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCC--CCCCCCCCeEeECCCCeEEEEEC
Confidence                 2356666654321 11000000 0011  12234578999999998776644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.43  E-value=0.0018  Score=51.81  Aligned_cols=147  Identities=10%  Similarity=0.018  Sum_probs=84.7

Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCce------eeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ------ITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN  366 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  366 (458)
                      .+..++|+|+|.+.++  .+|.++-.+..+...      -..+-  +-. .-.++.|.|+|.+.++  .||.|.-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            4679999999986666  788888877654221      11110  111 1478999999977766  569888887654


Q ss_pred             CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-----cccC--CCCCcEEEEEECCC
Q 012699          367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-----MRTL--PHGAAITTVDWHPT  439 (458)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-----~~~~--~h~~~v~~~~~~~~  439 (458)
                      .....|......+  ....-..+..+.+.|+|.+.++.  ++.++-.........     ....  ..-..-+-+.|.|+
T Consensus       117 ~~~~~Wl~~a~~v--g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          117 SDTDNWIARATEV--GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             STTCCHHHHSEEE--ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CCCCceeccccEe--ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            3332222110000  00112457899999999998887  666543333221100     1111  12223445779999


Q ss_pred             CCeEEEecCCCcE
Q 012699          440 LPMFLTGSADHSV  452 (458)
Q Consensus       440 ~~~l~s~~~dg~v  452 (458)
                      +.+.+..  +|.+
T Consensus       193 G~l~~v~--~g~~  203 (236)
T 1tl2_A          193 GTLFGVQ--GGKF  203 (236)
T ss_dssp             SCEEEEE--TTEE
T ss_pred             CcEEEEe--CCeE
Confidence            9876665  6643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.42  E-value=0.058  Score=47.70  Aligned_cols=242  Identities=12%  Similarity=0.049  Sum_probs=123.8

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccC-CCCCCceeeeeecCC---CCeEEEeecc-cCCCCcce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNT-TDAFPSVLDLKCSPV---EPIFVSAAAS-RRYGSSNI  265 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~-~~~~~~v~~~~~~~~---~~~~~~~~~~-~~~~~~~~  265 (458)
                      .....++|. ++++ |+++..+|.|++++. .++ .+..+.. .........++++|+   +..+..+... ...+    
T Consensus        29 ~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~----  101 (354)
T 3a9g_A           29 EVPWSIAPL-GGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG----  101 (354)
T ss_dssp             SCEEEEEEE-ETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG----
T ss_pred             CCCeEEEEc-CCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC----
Confidence            346789999 5666 444556699999973 443 2222211 112245789999997   4444433221 0000    


Q ss_pred             eeccceeEEEEECCCC--c---ee---EEeecCCCCCcEEEEEEccCCCEEEEEec-------------CCeEEEEeCCC
Q 012699          266 YSWGFASLTVWNMKTW--K---AM---TVLPLGEDPPAITSLCFNHNGKILAASAV-------------DGMIHMFDMSA  324 (458)
Q Consensus       266 ~~~~~g~i~i~d~~~~--~---~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~  324 (458)
                        ...+.|..|+....  .   ..   ..+.. ........++|.|+|.+.++-+.             .|.|..++...
T Consensus       102 --~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          102 --HIRNRVIRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             --CEEEEEEEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             --CcceEEEEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence              00126667776543  1   11   11221 11112467999999986665332             25677666542


Q ss_pred             C--------c-eeeeeeCCCCCeEEEEEcC-CCCEEEEecCCC---eEEEEeccCCCeeEEe-----ecCCcccCCC---
Q 012699          325 G--------L-QITGWPAHDSAISSILFGP-DETSIFSLGSDG---KIIEWSLQNQGQVLWT-----RNCSRFCDPE---  383 (458)
Q Consensus       325 ~--------~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~~~~~~~-----~~~~~~~~~~---  383 (458)
                      .        . .+. -.++.. ...++|+| ++.++++-...+   .|.+.  ..+...-|.     .....+..+.   
T Consensus       179 ~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~  254 (354)
T 3a9g_A          179 RPPADNPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDT  254 (354)
T ss_dssp             CCCTTSSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             CCCCCCCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeec
Confidence            2        0 111 123333 46899999 666555432221   23332  221110000     0000000010   


Q ss_pred             -CCCCceeEEEEc-------cCCCEEEEEeCCccEEEEEccCCCcc---cccC-CCCCcEEEEEECCCCCeEEEec
Q 012699          384 -SSKSCRHEMALD-------VNGRRLLVTSGSVRAPIYQVRGHASG---MRTL-PHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       384 -~~~~~v~~~~~s-------~~g~~l~~~~~~~~i~i~~~~~~~~~---~~~~-~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                       .....+..++|.       .+|+++++.-..+.|...+++.....   ..+. +-...+.++++.|||.++++..
T Consensus       255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence             123356778883       57777776666778888888753221   1222 2245789999999998666653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.32  E-value=0.081  Score=47.15  Aligned_cols=212  Identities=9%  Similarity=0.097  Sum_probs=131.8

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED  292 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~  292 (458)
                      +..+.+.|+..+........     ...+...+|..+.++.-...              .+.+||+++...++.+.+.+.
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi-----~AdsAIMnP~~~iiALrag~--------------~lQiFnle~K~klks~~~~e~  107 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKAGK--------------TLQIFNIEMKSKMKAHTMTDD  107 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC-----CCSEEEECSSSSCEEEEETT--------------EEEEEETTTTEEEEEEECSSC
T ss_pred             CCeEEEEECCCCCcceeccc-----ccceeeeCCCCcEEEEecCC--------------eEEEEchHHhhhhcceecCCC
Confidence            34788888887654422221     23356678888888777643              999999999999998876542


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCC----CCeEEEEEcCCCCEEEEecC-------CCeEE
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHD----SAISSILFGPDETSIFSLGS-------DGKII  360 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~  360 (458)
                         |.-=.|-.+ +.|+..+ +..|+-|++.. ..+.+.+..|.    ..|..-..+++.++++..+-       .|.+.
T Consensus       108 ---VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ  182 (494)
T 1bpo_A          108 ---VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ  182 (494)
T ss_dssp             ---CCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred             ---ceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence               444455443 3555544 56799999974 45666666553    46777778889998775432       46789


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc---CCCEEEEEeCC---ccEEEEEccCC---Cccc-----c-cC
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV---NGRRLLVTSGS---VRAPIYQVRGH---ASGM-----R-TL  425 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~---~~i~i~~~~~~---~~~~-----~-~~  425 (458)
                      +|..+.......          ++|......+.+.-   ..+.++.+...   +.++|.++...   ....     . ..
T Consensus       183 LYS~er~~sQ~i----------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f  252 (494)
T 1bpo_A          183 LYSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF  252 (494)
T ss_dssp             EEESTTCCEEEE----------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred             Eeeccccccchh----------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence            999886532221          11211111111111   11234444432   68999998543   1111     0 11


Q ss_pred             ---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          426 ---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       426 ---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                         .-.+...++..++.-..+..-..-|.|.+||++
T Consensus       253 ppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle  288 (494)
T 1bpo_A          253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (494)
T ss_dssp             CTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             CcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence               124567788888888888888889999999974

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.30  E-value=0.082  Score=46.72  Aligned_cols=253  Identities=10%  Similarity=0.028  Sum_probs=126.0

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--CCcc--ccccCCCceEEEEEecC---CCeEEEEEcC-------CC
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--ASRN--ATIYCGTEIMSLEWECK---SDRLLLIGTA-------DG  214 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~--~~~~~~~~v~~~~~~~~---~~~~l~~~~~-------dg  214 (458)
                      ....|+|.|+|+.|+.+...|.|++++......  ....  ...........++|+|.   ++.+.++-..       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            467999999998344455679999988533211  1100  01112345689999954   4555554332       23


Q ss_pred             cEEEEEcCCC--c--eee----eccC-CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc---
Q 012699          215 GIKAWNVDAK--R--VVC----DLNT-TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK---  282 (458)
Q Consensus       215 ~i~~wd~~~~--~--~~~----~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~---  282 (458)
                      .|..|+...+  .  ...    .+.. .........+.|.|++.++++.+.........-.....|.|.-++....-   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~  178 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD  178 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence            5666666533  1  111    1111 01111246799999997666654321100000001112567777765320   


Q ss_pred             ---------eeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--eEEEEeCCCC--------------------------
Q 012699          283 ---------AMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--MIHMFDMSAG--------------------------  325 (458)
Q Consensus       283 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~--------------------------  325 (458)
                               ....+.. ++ .....++|+|....|.++....  .=.|.-+..+                          
T Consensus       179 npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          179 NPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             CTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                     1112221 22 3468899999433444443321  1122211111                          


Q ss_pred             -----ceeeeeeCCCCCeEEEEEcC-------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          326 -----LQITGWPAHDSAISSILFGP-------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       326 -----~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                           .++..+.. ......++|.+       ++.++++.-..+.|...++... ......   .+.  ......+..++
T Consensus       257 ~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~---~~~--~~~~~rp~~v~  329 (353)
T 2g8s_A          257 VAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDG---RIL--TDRGQRIRDVR  329 (353)
T ss_dssp             CTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEE---EES--GGGCCCEEEEE
T ss_pred             CCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeE---Ecc--cCCCCceeEEE
Confidence                 11122222 23566777753       4667777667788888888753 222111   111  01234688999


Q ss_pred             EccCCCEEEEEe-CCccE
Q 012699          394 LDVNGRRLLVTS-GSVRA  410 (458)
Q Consensus       394 ~s~~g~~l~~~~-~~~~i  410 (458)
                      +.|||.++++.. .+|+|
T Consensus       330 ~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          330 TGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             ECTTSCEEEEECSTTEEE
T ss_pred             ECCCCcEEEEEeCCCCEE
Confidence            999998665433 34433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.15  E-value=0.11  Score=45.37  Aligned_cols=257  Identities=12%  Similarity=0.090  Sum_probs=131.0

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc----ccccCCCceEEEEEecC---CCeEEEEEc-
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN----ATIYCGTEIMSLEWECK---SDRLLLIGT-  211 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~~~~-  211 (458)
                      +..+-..-...+.|+|.|||+++++--..|.|++++..++......    ...........++++|.   ++.+.++-+ 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3344444556789999999998777655899999876544321110    11123456789999953   444444322 


Q ss_pred             -CCCcEEEEEcCCCc----------eee-eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699          212 -ADGGIKAWNVDAKR----------VVC-DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK  279 (458)
Q Consensus       212 -~dg~i~~wd~~~~~----------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~  279 (458)
                       .++.|.-|....+.          .+. .+.. ........+.|.|++.++++.+.........-.....|.|.-++..
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence             34556666655421          111 1211 1112356799999998887765432111000001122455555554


Q ss_pred             CCc-------eeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCc------------------eeeeeeC
Q 012699          280 TWK-------AMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGL------------------QITGWPA  333 (458)
Q Consensus       280 ~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~------------------~~~~~~~  333 (458)
                      ..-       ....+. .++ .....++|+|+|.+.++-. .++.=.|.-+..+.                  ++..+..
T Consensus       183 G~ip~~nPf~~~~i~a-~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~  260 (347)
T 3das_A          183 GEPAPGNPFPGSPVYS-YGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST  260 (347)
T ss_dssp             SSBCTTCSSTTCCEEE-BCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred             CCccCCCCCCCCeEEe-eCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence            320       111222 233 2356799999887655432 12212222222211                  1223332


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      +......++|. ++..+...-..+.|....+...+...   ....+.  ......+..++..|||.++++..
T Consensus       261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~---~~e~~l--~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA---DPQAFL--EGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS---CCEEES--TTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceec---ceEEee--cCCCCCccEEEECCCCcEEEEEc
Confidence            22355677775 45556555556666666665432110   000111  12335688899999998766544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.14  E-value=0.24  Score=49.03  Aligned_cols=273  Identities=10%  Similarity=0.096  Sum_probs=150.0

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      ..|.++....++ .|..|+.+| +..||..+.....  ........|.++..  .++. |..++.+ -+..||..+++..
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~--~~~~~~~~i~~i~~--~~g~-lWigt~~-Gl~~~~~~~~~~~  134 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ--PETDFPTDVRTMAL--QGDT-LWLGALN-GLYTYQLQSRKLT  134 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC--CSCCCCSCEEEEEE--ETTE-EEEEETT-EEEEEETTTCCEE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC--cccCCCceEEEEEe--cCCc-EEEEcCC-cceeEeCCCCeEE
Confidence            458888777666 566666665 7788876653221  11111234666653  3444 5555555 5888998776543


Q ss_pred             eecc--CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC----CCCcEEEEEE
Q 012699          228 CDLN--TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----DPPAITSLCF  301 (458)
Q Consensus       228 ~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~  301 (458)
                      ....  .......|.++....++.+.+.. ..              .+..++..+.+... +....    ....|.++..
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~--------------Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~  198 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQIYVGT-YN--------------GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLE  198 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCCEEEEE-TT--------------EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEE
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCCEEEEe-CC--------------CHhhCccCCCceEE-ecCCCccccccceeEEEEE
Confidence            2211  11112457788777777766643 22              57778877654332 22111    1234888888


Q ss_pred             ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      .+++..|.+|+. +-+..+|..+++...........|.++...++|.+.+ |+. +-+.+++..+.........  ....
T Consensus       199 d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~--~~~~  273 (758)
T 3ott_A          199 DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHD--SRNI  273 (758)
T ss_dssp             ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCC--TTCT
T ss_pred             ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcC--CCCc
Confidence            887776666664 4588899876543221111234588888888886554 444 4577888765422111100  0001


Q ss_pred             CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc---C--CCCCcEEEEEECCCCCeEEEecCCCcE
Q 012699          382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT---L--PHGAAITTVDWHPTLPMFLTGSADHSV  452 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~---~--~h~~~v~~~~~~~~~~~l~s~~~dg~v  452 (458)
                      ..-....|.++....+|.+.+ |+..| +.++...........   .  .....|.++.-.++|.+.+. +.+|..
T Consensus       274 ~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~  346 (758)
T 3ott_A          274 QSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI  346 (758)
T ss_dssp             TSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred             CcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence            112344688888888887665 44455 544433221111000   0  12346888888888875544 345533

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.06  E-value=0.14  Score=44.95  Aligned_cols=199  Identities=12%  Similarity=0.128  Sum_probs=109.2

Q ss_pred             eEEEEeCCCCCEEEEEe------------CCCcEEEEecCCCCCCCcccccc------CCCceEEEEEecC-CC-eEEEE
Q 012699          150 ISCCRFSSSGNNIASAS------------VDGTVRIWTYDSSTPASRNATIY------CGTEIMSLEWECK-SD-RLLLI  209 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~-~~-~~l~~  209 (458)
                      .-.+...|+|..+++++            .+|.|.++|.++...........      ..-....+.+.+. ++ .+|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            34556678775555542            68999999987432211111111      1235667777642 23 34444


Q ss_pred             E-cC--CCcEEEEEcCCCc----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCc----ceeeccceeEEEEEC
Q 012699          210 G-TA--DGGIKAWNVDAKR----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS----NIYSWGFASLTVWNM  278 (458)
Q Consensus       210 ~-~~--dg~i~~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~i~i~d~  278 (458)
                      + ..  +.++.+|+++.+.    .+..+.. .......++.+.++|...++....-.....    .......|.+..+|.
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            4 33  4577887776532    2223332 233568899999999877765421000000    000112357777776


Q ss_pred             CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcC-CCCEEEEe
Q 012699          279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGP-DETSIFSL  353 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~  353 (458)
                      .  +......   .-...+.++|+||++.|+++. ..+.|+.|++.. ++.  ...+. ..+..-.+++.+ +|++.+++
T Consensus       211 ~--~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          211 N--DVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             T--CCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             C--eEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence            3  2222221   123468999999998887765 467899999863 322  22332 245567788888 48766655


Q ss_pred             cC
Q 012699          354 GS  355 (458)
Q Consensus       354 ~~  355 (458)
                      ..
T Consensus       285 ~~  286 (355)
T 3sre_A          285 HP  286 (355)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.02  E-value=0.16  Score=44.90  Aligned_cols=251  Identities=13%  Similarity=0.133  Sum_probs=122.3

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC-----CCCCCceeeeeecCC---CCeEEEeecccCCCCcc
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT-----TDAFPSVLDLKCSPV---EPIFVSAAASRRYGSSN  264 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~  264 (458)
                      ....++|. ++++.|+++...|.|++++.. +.....+..     .........++++|+   +..+...........  
T Consensus        19 ~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g--   94 (353)
T 2g8s_A           19 HPWALAFL-PDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG--   94 (353)
T ss_dssp             SEEEEEEC-STTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS--
T ss_pred             CcEEEEEc-CCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC--
Confidence            45789999 667624445567999999854 332111110     111235688999995   444443322110000  


Q ss_pred             eeeccceeEEEEECCCC--c--eeE-Eee-cC---CCCCcEEEEEEccCCCEEEEEec-------------CCeEEEEeC
Q 012699          265 IYSWGFASLTVWNMKTW--K--AMT-VLP-LG---EDPPAITSLCFNHNGKILAASAV-------------DGMIHMFDM  322 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~--~--~~~-~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~  322 (458)
                         .....|..|++...  .  ... .+. ..   ........++|.|+|.+.++-+.             .|.|.-++.
T Consensus        95 ---~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~  171 (353)
T 2g8s_A           95 ---KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD  171 (353)
T ss_dssp             ---CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred             ---CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence               00135666666432  1  111 111 11   01112357999999955444322             246777776


Q ss_pred             CCCc------------eeeee-eCCCCCeEEEEEcC-CCCEEEEecC--CCeEEEEeccCCCeeEEee------------
Q 012699          323 SAGL------------QITGW-PAHDSAISSILFGP-DETSIFSLGS--DGKIIEWSLQNQGQVLWTR------------  374 (458)
Q Consensus       323 ~~~~------------~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~------------  374 (458)
                      ...-            ....+ .++ .....++|+| +++ |+++..  ++.=.|.-+..+..--|..            
T Consensus       172 dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          172 QGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             TSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            5320            11111 233 3467899999 564 444332  2222333332221100000            


Q ss_pred             ------cCCcccCCC---CCCCceeEEEEcc-------CCCEEEEEeCCccEEEEEccCCCcc--cccC-CCCCcEEEEE
Q 012699          375 ------NCSRFCDPE---SSKSCRHEMALDV-------NGRRLLVTSGSVRAPIYQVRGHASG--MRTL-PHGAAITTVD  435 (458)
Q Consensus       375 ------~~~~~~~~~---~~~~~v~~~~~s~-------~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~h~~~v~~~~  435 (458)
                            .+..+..+.   .+...+..++|..       +|+++++.-..+.|...+++.....  ..+. .....+.+++
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                  000000000   1123466677753       5677776666788888887754211  1122 2235799999


Q ss_pred             ECCCCCeEEEec-CCCcE
Q 012699          436 WHPTLPMFLTGS-ADHSV  452 (458)
Q Consensus       436 ~~~~~~~l~s~~-~dg~v  452 (458)
                      +.|||.++++.. .+|.|
T Consensus       330 ~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          330 TGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             ECTTSCEEEEECSTTEEE
T ss_pred             ECCCCcEEEEEeCCCCEE
Confidence            999999666433 44533

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.93  E-value=0.067  Score=47.37  Aligned_cols=106  Identities=15%  Similarity=0.063  Sum_probs=49.5

Q ss_pred             CCeEEEEEcCC-CcEEEEEcCC--CceeeeccCCCCCCceeeeeecCCCCeEEEeec-ccCCCCcceeeccceeEEEEEC
Q 012699          203 SDRLLLIGTAD-GGIKAWNVDA--KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA-SRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       203 ~~~~l~~~~~d-g~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      ++.+++.|+.+ ..+.+||+.+  .+....-.... .......+..-++.+++.++. +...+..    .....+.+||+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~----~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAFIDGNLYVFGGIGKNSEGLT----QVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEEETTEEEEECCEEECTTSCE----EECCCEEEEET
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEEECCEEEEEcCCCCCCCccc----eeeccEEEEeC
Confidence            56666776643 4688899874  33322111110 111111122235666776665 2000000    01147899999


Q ss_pred             CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                      .+.+-...-........-.+++. .++++++.|+.+
T Consensus        94 ~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           94 KTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            88654443222211111122222 567777888754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.88  E-value=0.18  Score=43.31  Aligned_cols=175  Identities=7%  Similarity=0.059  Sum_probs=97.0

Q ss_pred             eeecCCCCeEEEeecccCC-CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe----cCCe
Q 012699          242 LKCSPVEPIFVSAAASRRY-GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA----VDGM  316 (458)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~  316 (458)
                      --+++++..+......... ....+.......|+..++...+......   .    ....|++++++|+-..    .+..
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~----~~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D----PCIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S----CEEEEEEETTEEEEEEESSSSCEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C----CccEEEEeCCEEEEEeecCCCCce
Confidence            3457788887776543210 0000111223578888888765433321   1    1236788888888765    2446


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      |+..++.. .....+..+..    .+++|+++.|+-.+. ...|...++......... .           ... ...++
T Consensus       131 Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~-----------~~~-~~~~~  192 (302)
T 3s25_A          131 LYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-D-----------CNC-YKPVV  192 (302)
T ss_dssp             EEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-C-----------SCE-EEEEE
T ss_pred             EEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-C-----------CCc-cceee
Confidence            66667663 33444444432    456788888886655 567877777654322111 1           011 12466


Q ss_pred             cCCCEEEEEeCCc--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe
Q 012699          396 VNGRRLLVTSGSV--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       396 ~~g~~l~~~~~~~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  446 (458)
                      |++.+|+.....+  .|..-++.+... ..+..  ..+  ..|+|++.+|.-+
T Consensus       193 P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          193 LDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEE
T ss_pred             ecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEE
Confidence            9999998876543  566667766542 22221  222  3477777766654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.87  E-value=0.054  Score=43.37  Aligned_cols=150  Identities=11%  Similarity=0.003  Sum_probs=82.0

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee------EEeecCCCCCcEEEEEEccCCCEEEE
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM------TVLPLGEDPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (458)
                      ..+..++|+|++.+.+.  .+             |.+.-.+..+....      ..+-..+- ....++.|.|+|.+.++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~-------------G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~LYav  104 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LN-------------DKIYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGYLYAV  104 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ET-------------TEEEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSCEEEE
T ss_pred             ccceeEEECCCccEEEE--eC-------------CeEEEECCCCCCcccccccccEeccccc-ccceEEEECCCCCEEEe
Confidence            35779999998887766  33             47666666442211      11110111 12478999999987776


Q ss_pred             EecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          311 SAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       311 ~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                        .||.|+-++-.+...       ...-..-=..+..|.|.|+|.+.+..  |+.++-..........+......+.  .
T Consensus       105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g--~  178 (236)
T 1tl2_A          105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG--Q  178 (236)
T ss_dssp             --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE--S
T ss_pred             --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec--c
Confidence              579998888643211       11111112467999999999766655  7775433332221111110000000  0


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccE
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRA  410 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i  410 (458)
                      ..-.....+.|.|+|.+.++.  ++.+
T Consensus       179 ~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          179 GGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCcceEEEEEECCCCcEEEEe--CCeE
Confidence            111223447799999888877  6643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.78  E-value=0.23  Score=43.05  Aligned_cols=185  Identities=13%  Similarity=0.068  Sum_probs=89.3

Q ss_pred             CCCCCEEEEEeC----CC-------cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-------CcEE
Q 012699          156 SSSGNNIASASV----DG-------TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-------GGIK  217 (458)
Q Consensus       156 ~~~~~~l~s~~~----dg-------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~  217 (458)
                      ..++..++.|+.    ++       .+.+||..+.+..... .......-.+++.  .++.+++.|+.+       ..+.
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP-PLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS-CBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC-CCCccccccceEE--ECCEEEEEcCccCCCCcccceEE
Confidence            446677777773    12       1667777665432111 1111111122222  256777777754       2578


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +||+.+++....-....  ......+...++.+++.++.+....       ....+.+||+.+.+-...-..........
T Consensus       131 ~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  201 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCLGGKTDDKK-------CTNRVFIYNPKKGDWKDLAPMKTPRSMFG  201 (318)
T ss_dssp             EEETTTTEEEEECCCSS--CEESCEEEEETTEEEEECCEESSSC-------BCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             EEeCCCCCEeECCCCCC--cccccEEEEECCEEEEEcCCCCCCC-------ccceEEEEcCCCCEEEECCCCCCCcccce
Confidence            88988876544322221  1111122224566667666432100       01378999998865444322221111122


Q ss_pred             EEEEccCCCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          298 SLCFNHNGKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      ++.+  +++.++.|+.+     ..+.+||+.+.+...  .++........+.  .+++.++.|+.+
T Consensus       202 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~  263 (318)
T 2woz_A          202 VAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFA  263 (318)
T ss_dssp             EEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             EEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCee
Confidence            2222  56677777653     357889987754332  2222112222222  246677777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.77  E-value=0.18  Score=49.26  Aligned_cols=206  Identities=11%  Similarity=0.162  Sum_probs=108.5

Q ss_pred             CCCeEEEEEcCC----CcEEEEEcCCCceeeec-cC---CCCCCc-eeeeeecC-CCCeEEEeecccCCCCcceeeccce
Q 012699          202 KSDRLLLIGTAD----GGIKAWNVDAKRVVCDL-NT---TDAFPS-VLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       202 ~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~-~~---~~~~~~-v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      .++.+++.|+.+    ..+.+||..+++....- ..   ...... -.+++..+ ++.+++.|+.+....       ...
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~-------~~~  468 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQ-------GLS  468 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTC-------BCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCC-------ccc
Confidence            356677777653    46889999887654332 10   011111 12333333 777777777653211       013


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--eEEEEeCCCCceeee-----eeCCCCCeEEEEEc
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--MIHMFDMSAGLQITG-----WPAHDSAISSILFG  344 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~-----~~~~~~~v~~~~~~  344 (458)
                      .+.+||+.+.+....-.... +..-.+++.-.+++.++.|+.++  .+.+||..+.+....     ++.......++.+.
T Consensus       469 dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          469 DNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             CCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred             cEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence            68899998855433222211 11122333334788888887654  699999887653322     11112222335555


Q ss_pred             CC-CCEEEEecC--C-----CeEEEEeccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-------
Q 012699          345 PD-ETSIFSLGS--D-----GKIIEWSLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-------  406 (458)
Q Consensus       345 ~~-~~~l~~~~~--d-----g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------  406 (458)
                      .+ ++.++.|+.  +     ..+.+||+.+..-   ..|......   + .....-..++...++++++.|+.       
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~  623 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---P-LFQRYGSQIKYITPRKLLIVGGTSPSGLFD  623 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---G-GGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---C-CCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence            54 667777765  2     4588999987651   112211110   0 01111123333344777777774       


Q ss_pred             -CccEEEEEccCCC
Q 012699          407 -SVRAPIYQVRGHA  419 (458)
Q Consensus       407 -~~~i~i~~~~~~~  419 (458)
                       ...+.+||+.+..
T Consensus       624 ~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          624 RTNSIISLDPLSET  637 (695)
T ss_dssp             TTTSEEEEETTTTE
T ss_pred             CCCeEEEEECCCCe
Confidence             3468999987653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.76  E-value=0.18  Score=44.53  Aligned_cols=251  Identities=8%  Similarity=-0.017  Sum_probs=113.6

Q ss_pred             CCCEEEEEeCC-CcEEEEecCC--CCCCCcccccc-CCCceEEEEEecCCCeEEEEEcC-C---------CcEEEEEcCC
Q 012699          158 SGNNIASASVD-GTVRIWTYDS--STPASRNATIY-CGTEIMSLEWECKSDRLLLIGTA-D---------GGIKAWNVDA  223 (458)
Q Consensus       158 ~~~~l~s~~~d-g~v~iwd~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~~wd~~~  223 (458)
                      +++.++.|+.+ ..+.++|...  .+.... .... ....-.+++.  -++.+++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~-~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTAL-AAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEEC-CCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeEC-CCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            55566666543 4678888764  222111 1111 1111122222  25677777765 2         4688999988


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcce--------------------------eeccceeEEEEE
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNI--------------------------YSWGFASLTVWN  277 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~g~i~i~d  277 (458)
                      .+....-... ........+...++++++.++.+........                          ...-...+.+||
T Consensus        96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            7754432222 1111112122256677777765421000000                          000014899999


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec------CCeEEEEeC--CCCcee--eeeeCCCCCeEEEEEcCCC
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV------DGMIHMFDM--SAGLQI--TGWPAHDSAISSILFGPDE  347 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~--~~~~~~--~~~~~~~~~v~~~~~~~~~  347 (458)
                      +.+.+-...-........-.+++.. ++++++.|+.      ...+.+||+  .+.+..  ..+..........+...++
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~  253 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND  253 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence            9886654443322111111223322 5666666654      235777876  433222  2221111111111222356


Q ss_pred             CEEEEecCC----------------------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          348 TSIFSLGSD----------------------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       348 ~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      +.++.|+.+                      ..+.+||+.+..-... .   ...   .....  ..+...++++++.|+
T Consensus       254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~---~~p---~~r~~--~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-G---ELS---QGRAY--GVSLPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-E---ECS---SCCBS--SEEEEETTEEEEEEE
T ss_pred             EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-C---CCC---CCccc--ceeEEeCCEEEEEee
Confidence            677777642                      2477888875432111 0   111   11111  122345788888888


Q ss_pred             CCc------cEEEEEccCCCccc
Q 012699          406 GSV------RAPIYQVRGHASGM  422 (458)
Q Consensus       406 ~~~------~i~i~~~~~~~~~~  422 (458)
                      .++      .+.++++++.+...
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEe
Confidence            542      46666777765443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.60  E-value=0.33  Score=42.45  Aligned_cols=240  Identities=14%  Similarity=0.115  Sum_probs=122.3

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--ecc--CCCCCCceeeeeecCC----CCeEEEeecccCCCCc
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLN--TTDAFPSVLDLKCSPV----EPIFVSAAASRRYGSS  263 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~--~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~  263 (458)
                      ...+.++|. +++.++++--..|.|++++...++...  .+.  ..........++++|+    +.+.++-+...     
T Consensus        32 ~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~-----  105 (347)
T 3das_A           32 NSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS-----  105 (347)
T ss_dssp             SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS-----
T ss_pred             CCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC-----
Confidence            456889999 677766666558999999876555321  121  0112356789999995    33333322110     


Q ss_pred             ceeeccceeEEEEECCCCc--------eeEEee-cC-CCCCcEEEEEEccCCCEEEEEec-------------CCeEEEE
Q 012699          264 NIYSWGFASLTVWNMKTWK--------AMTVLP-LG-EDPPAITSLCFNHNGKILAASAV-------------DGMIHMF  320 (458)
Q Consensus       264 ~~~~~~~g~i~i~d~~~~~--------~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~  320 (458)
                            .+.|.-|......        ....+. +. ........|+|.|+|.+.++.+.             .|.|.-+
T Consensus       106 ------~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          106 ------DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             ------SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             ------CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence                  0356666554311        111111 11 11123467999999986666432             3556666


Q ss_pred             eCCCC---------ceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEee-----cCCcccCCC--
Q 012699          321 DMSAG---------LQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTR-----NCSRFCDPE--  383 (458)
Q Consensus       321 d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~--  383 (458)
                      +....         ..+.. .+|.+ ...++|+|+|.++++= +.|+.=.|--+..+..--|..     ....+..+.  
T Consensus       180 ~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             eCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            65422         11111 24443 4589999988655443 223322333333222110000     000000000  


Q ss_pred             --CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---cccC-CCCCcEEEEEECCCCCeEEEe
Q 012699          384 --SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---MRTL-PHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       384 --~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---~~~~-~h~~~v~~~~~~~~~~~l~s~  446 (458)
                        .+......++|. +|..+...-..+.|....++.....   ..+. +....+.+++..|||.++++.
T Consensus       258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence              011244566665 4555555555566776777654321   1222 345689999999999966653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.059  Score=46.89  Aligned_cols=192  Identities=9%  Similarity=0.027  Sum_probs=97.1

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEe--cCCCeEEEEE-cCCCcEEEEEcCCCceeeeccCCC--C
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE--CKSDRLLLIG-TADGGIKAWNVDAKRVVCDLNTTD--A  235 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~--~  235 (458)
                      .++.++.||.|.-.|..+++........ ...++....-.  +.++..++.. +.||.|..++..+|.....+....  .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            6777888888888887777654322221 11122211100  0133444443 689999999988876544333211  0


Q ss_pred             CCceee---eee-c----CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc-----EEEEEEc
Q 012699          236 FPSVLD---LKC-S----PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-----ITSLCFN  302 (458)
Q Consensus       236 ~~~v~~---~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-----i~~~~~~  302 (458)
                      ..++..   ..+ .    ..+..+++++.+             |.+...|+++|+.+..+........     ..|....
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~-------------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~  157 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMR-------------TIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE  157 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEE-------------EEEEEEETTTCCEEEEESTTCBCC-------------
T ss_pred             ccccccCCCceeecccccccCCEEEEEecC-------------CEEEEEECCCCcEEEEEecCCCccccccccccccccc
Confidence            011110   000 0    033455566655             6999999999999999875432111     1111111


Q ss_pred             -----cCCCEEEEEecCCeEEEEeCCCCceeeeee-----CCCCC--eE-EEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699          303 -----HNGKILAASAVDGMIHMFDMSAGLQITGWP-----AHDSA--IS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQ  369 (458)
Q Consensus       303 -----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  369 (458)
                           ..+..++.|..+..+.+.+ ++++ +..+.     .....  +. +-..+.++.+ +.++.||.|.-+|..++..
T Consensus       158 d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~  234 (339)
T 2be1_A          158 KIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA  234 (339)
T ss_dssp             -------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred             ccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence                 1245788888787777777 4453 22211     10000  00 0001123555 4467788888888776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.31  E-value=0.32  Score=47.44  Aligned_cols=198  Identities=10%  Similarity=0.078  Sum_probs=104.5

Q ss_pred             CCCCEEEEEeCC----CcEEEEecCCCCCCCcccc-----ccCCCceEEEEEecCCCeEEEEEcCC------CcEEEEEc
Q 012699          157 SSGNNIASASVD----GTVRIWTYDSSTPASRNAT-----IYCGTEIMSLEWECKSDRLLLIGTAD------GGIKAWNV  221 (458)
Q Consensus       157 ~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~  221 (458)
                      .++..++.|+.+    ..+.+||..+.+.......     ......-.+++..+.++.+++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    3578888877653321101     11111112233321167788887754      35788999


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee---cCCCCCcEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP---LGEDPPAITS  298 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~---~~~~~~~i~~  298 (458)
                      .+++....-..... ..-.+++...++.+++.|+.+..           +.+.+||+.+..-...-.   .........+
T Consensus       476 ~t~~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~-----------~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a  543 (695)
T 2zwa_A          476 KTREWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEG-----------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG  543 (695)
T ss_dssp             TTTEEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSS-----------CSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred             CCCcEEECCCCCCC-cccceEEEEcCCEEEEECCCCCC-----------CCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence            88765443222211 11122333247788888876532           178899998865443221   1111122233


Q ss_pred             EEEccC-CCEEEEEec--C-----CeEEEEeCCCCce-----eeeee----CCCCCeEEEEEcCCCCEEEEecC------
Q 012699          299 LCFNHN-GKILAASAV--D-----GMIHMFDMSAGLQ-----ITGWP----AHDSAISSILFGPDETSIFSLGS------  355 (458)
Q Consensus       299 ~~~~~~-~~~l~~~~~--d-----g~i~v~d~~~~~~-----~~~~~----~~~~~v~~~~~~~~~~~l~~~~~------  355 (458)
                      +.+..+ ++.++.|+.  +     ..+.+||+.+.+.     -..+.    ....... ++...+++.++.|+.      
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~  622 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLF  622 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCC
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCC
Confidence            555655 667777765  2     4689999887661     11111    1111222 223333667777774      


Q ss_pred             --CCeEEEEeccCC
Q 012699          356 --DGKIIEWSLQNQ  367 (458)
Q Consensus       356 --dg~i~iwd~~~~  367 (458)
                        ...+.+||+.+.
T Consensus       623 ~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          623 DRTNSIISLDPLSE  636 (695)
T ss_dssp             CTTTSEEEEETTTT
T ss_pred             CCCCeEEEEECCCC
Confidence              345889998865

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.27  E-value=0.67  Score=42.42  Aligned_cols=120  Identities=15%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCC----CCCCceeeeeecCC---CCeEEEeecccCCCC
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTT----DAFPSVLDLKCSPV---EPIFVSAAASRRYGS  262 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~----~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~  262 (458)
                      ...+.++|. ++++++++-...+.|++++..+++...  .+...    ........++++|+   +..+...........
T Consensus        27 ~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            346789999 677766665444578888765554322  22211    12345779999995   444443332100000


Q ss_pred             cceeeccceeEEEEECCCC--c---eeEEee-c-CCCCCcEEEEEEccCCCEEEEEe
Q 012699          263 SNIYSWGFASLTVWNMKTW--K---AMTVLP-L-GEDPPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       263 ~~~~~~~~g~i~i~d~~~~--~---~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~  312 (458)
                      ..........|.-++....  +   ....+. + .........|+|.|+|.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            0000000125555554321  1   111111 1 11123478999999998766644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.88  E-value=0.51  Score=48.98  Aligned_cols=211  Identities=9%  Similarity=0.097  Sum_probs=124.4

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      ..|.|.|+..+..+....     -...+...+|..+.++.-..              .++.+||+.+...++.+.+..  
T Consensus        48 ~~vvIidl~~~~~~~rrp-----i~AdsAIMnP~~~iiALrag--------------~~lQiFnl~~k~klks~~~~e--  106 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRP-----ISADSAIMNPASKVIALKAG--------------KTLQIFNIEMKSKMKAHTMTD--  106 (1630)
T ss_pred             ceEEEEECCCCCCccccc-----ccchhhccCCCcceEEEecC--------------CeEEEeehHHhhhhcccccCC--
Confidence            378888888766432211     12334557788887777653              399999999988888776543  


Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCC----CCCeEEEEEcCCCCEEEEec-------CCCeEEE
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAH----DSAISSILFGPDETSIFSLG-------SDGKIIE  361 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i  361 (458)
                       +|.-=.|-.+. .|+..+ +..|+.|++.. ..+.+.+..|    ...|..-..+++.++++..|       -.|.+.+
T Consensus       107 -~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL  183 (1630)
T 1xi4_A          107 -DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (1630)
T ss_pred             -CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence             35555555443 444443 55799999964 3555555444    34677777788888877443       3578899


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEc---cCCCEEEEEeC---CccEEEEEccCC---Ccccc------cCC
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD---VNGRRLLVTSG---SVRAPIYQVRGH---ASGMR------TLP  426 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~---~~~i~i~~~~~~---~~~~~------~~~  426 (458)
                      |..........          ++|......+...   +..+.++.+..   .+.++|.++...   .....      ..+
T Consensus       184 yS~er~~sQ~i----------egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~  253 (1630)
T 1xi4_A          184 YSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (1630)
T ss_pred             eecccccchhh----------hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence            98875422111          1111111111110   11122222222   267888888543   11110      111


Q ss_pred             ---CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          427 ---HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       427 ---h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                         -.+...++..++.-..+..-+.-|.|.++|++
T Consensus       254 ~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~  288 (1630)
T 1xi4_A          254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (1630)
T ss_pred             cccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence               23456678888887778888888999999974

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.81  E-value=1.1  Score=41.01  Aligned_cols=254  Identities=11%  Similarity=0.040  Sum_probs=121.2

Q ss_pred             CeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccc----ccc------CCCceEEEEEecC---CCeEEEEEcC--
Q 012699          149 PISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNA----TIY------CGTEIMSLEWECK---SDRLLLIGTA--  212 (458)
Q Consensus       149 ~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~------~~~~v~~~~~~~~---~~~~l~~~~~--  212 (458)
                      .-+.|+|.|+|. .|+.+...|.|++++...........    ...      .......|+|+|.   ++.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            456899999986 45556678999999754321110000    111      1346788999953   3444444332  


Q ss_pred             C----------CcEEEEEcCCC----------ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC----cceeec
Q 012699          213 D----------GGIKAWNVDAK----------RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS----SNIYSW  268 (458)
Q Consensus       213 d----------g~i~~wd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  268 (458)
                      +          ..|.-|.+..+          +.+..+...........|.|.|++.+.++.+.......    ..-...
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~  174 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD  174 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence            1          13444555321          22222221111124678999999988777665431100    000111


Q ss_pred             cceeEEEEECCCCc-------------------eeEEeecCCCCCcEEEEEEccC-----CC-EEEEEecCC----eEEE
Q 012699          269 GFASLTVWNMKTWK-------------------AMTVLPLGEDPPAITSLCFNHN-----GK-ILAASAVDG----MIHM  319 (458)
Q Consensus       269 ~~g~i~i~d~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~-----~~-~l~~~~~dg----~i~v  319 (458)
                      ..|.|.-.|.....                   ....+. .++. ....++|+|.     |. +++.+...|    .-.|
T Consensus       175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei  252 (463)
T 2wg3_C          175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARI  252 (463)
T ss_dssp             CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred             CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence            22556666665420                   011121 1232 2456899996     34 444443212    1233


Q ss_pred             EeCCCC------ceeeeeeCCC-CCeEEEEEcC-------CCCEEEEecCCCeEEEEeccCCCeeEEeecC--C-cccCC
Q 012699          320 FDMSAG------LQITGWPAHD-SAISSILFGP-------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNC--S-RFCDP  382 (458)
Q Consensus       320 ~d~~~~------~~~~~~~~~~-~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~~  382 (458)
                      ..+..+      .++..+..|. ..+..+.|-.       .+.+|+ +...+.|....+...+........  . .....
T Consensus       253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            333322      3455554332 4677888743       234454 444466665555433211110000  0 00001


Q ss_pred             CCCCCceeEEEEccCCCEEEEEe
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      ......+..+...|||.++++..
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEec
Confidence            12345689999999999888775

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.79  E-value=1.7  Score=42.93  Aligned_cols=279  Identities=10%  Similarity=0.060  Sum_probs=148.4

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      ..|.++...+++.+.+ |..+| +..++..+..........   .....|.++... .++..|..|+. +-+..+|..++
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d-~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED-TTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE-TTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEE-CCCCEEEEEEC-CCCeEEcCCCC
Confidence            4688888887877554 44444 667776554321100000   012347778776 44444444554 45888898776


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-----CCCCcEEEE
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-----EDPPAITSL  299 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~  299 (458)
                      +........  ...|.++....++.+.+.. ..              .+.+++..+.+........     -....|.++
T Consensus       222 ~~~~~~~l~--~~~i~~i~~d~~g~lWigT-~~--------------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i  284 (758)
T 3ott_A          222 QIKQTEAFH--NNSIKSLALDGNGDLLAGT-DN--------------GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNI  284 (758)
T ss_dssp             EEEEEEEEE--EEEEEEEEECTTCCEEEEE-TT--------------EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEE
T ss_pred             eEEeccCCC--CCeEEEEEEcCCCCEEEEe-CC--------------ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEE
Confidence            543221111  1357778777777766554 22              6778887765443221110     112458899


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeee-----eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC--eeEE
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGW-----PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG--QVLW  372 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~  372 (458)
                      ...++|. |-+|+..| +.++...........     ......|.++.-..+|.+.+ |+.+| +..++..+..  ....
T Consensus       285 ~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~  360 (758)
T 3ott_A          285 FADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIW  360 (758)
T ss_dssp             EECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEE
T ss_pred             EEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEE
Confidence            8888776 45566666 555543221111110     01234688888888886544 44454 6666655321  1111


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CC-----CCCcEEEEEECCCCCeEEEe
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LP-----HGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~-----h~~~v~~~~~~~~~~~l~s~  446 (458)
                      .... . .........|.++.-..+|++.+ |+. +-+..++..+....... ..     ....|.++...+++.+.+ |
T Consensus       361 ~~~~-~-~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-g  435 (758)
T 3ott_A          361 YRMG-D-KTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-S  435 (758)
T ss_dssp             ECTT-C-SSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-E
T ss_pred             eccC-C-cCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-E
Confidence            1000 0 00111234588888888887665 444 46888888765321110 01     234688888888887554 4


Q ss_pred             cCCCcEEEEe
Q 012699          447 SADHSVQVMS  456 (458)
Q Consensus       447 ~~dg~v~iw~  456 (458)
                      +..+-|.+++
T Consensus       436 T~~~Gl~~~~  445 (758)
T 3ott_A          436 TCLGGIFVVD  445 (758)
T ss_dssp             ESSSCEEEEE
T ss_pred             ECCCceEEEc
Confidence            4444455554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.42  E-value=1.1  Score=38.34  Aligned_cols=163  Identities=9%  Similarity=0.074  Sum_probs=92.3

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee--cccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA--ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE  291 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~  291 (458)
                      ..|+..+++.++.......       ....+++++..++...  .+.           ...|...++..... ..+..  
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~-------~~~~~s~~g~~Iy~~~~~~~~-----------~~~Iy~~~~dGs~~-~~lt~--  146 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPD-------PCIYASLIGNYIYYLHYDTQT-----------ATSLYRIRIDGEEK-KKIKN--  146 (302)
T ss_dssp             EEEEEEETTSCCCEEEECS-------CEEEEEEETTEEEEEEESSSS-----------CEEEEEEETTSCCC-EEEES--
T ss_pred             CeEEEEeCCCCcceEeecC-------CccEEEEeCCEEEEEeecCCC-----------CceEEEEECCCCCe-EEEeC--
Confidence            4677777776653322111       1235677888777665  111           14777777765443 33331  


Q ss_pred             CCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC--CeEEEEeccCCC
Q 012699          292 DPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD--GKIIEWSLQNQG  368 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~  368 (458)
                      +.  +  .+++|+++.|+-.+. ...|++.++..+.....+.   +... ..++|++.+|+-...+  ..|..-++....
T Consensus       147 ~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          147 HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            21  1  356788888886655 5788888887655433332   2222 3456988888766543  356566665433


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCC
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHA  419 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~  419 (458)
                      ....       .     ...+  ..|+|++++|+.+..  .+.|..-++++..
T Consensus       219 ~~~L-------t-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          219 PVVL-------T-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             CEEC-------S-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             eEEE-------e-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            2111       0     1112  348899999987643  3567777777654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.19  E-value=3.8  Score=35.41  Aligned_cols=161  Identities=7%  Similarity=0.016  Sum_probs=88.6

Q ss_pred             CcEEEE-EEcc--CCCEEEEEecCCeEEEEeCCCCc-------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          294 PAITSL-CFNH--NGKILAASAVDGMIHMFDMSAGL-------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       294 ~~i~~~-~~~~--~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      ..|..+ .+.+  +..+++..+.+|.++...+..-.       ....++. .+.+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            345554 4432  57799999999999998875422       2223333 34455555545556788888899988887


Q ss_pred             cc--CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---------cccCCCCCcEE
Q 012699          364 LQ--NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---------MRTLPHGAAIT  432 (458)
Q Consensus       364 ~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---------~~~~~h~~~v~  432 (458)
                      ..  .-...-........... .....|.++...+++.+|+..+..|.++.-.+..-...         ..+..-.+.+.
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv  252 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV  252 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred             CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence            76  22111000000011111 23445666666666778999999998888876543211         11111123444


Q ss_pred             EEEECCCCCeEEEecCCCcEEEEe
Q 012699          433 TVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       433 ~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      .+....+...++..+.+|.+.-++
T Consensus       253 ~~~~~~~~~~i~l~T~~G~~ir~~  276 (327)
T 3uc1_A          253 GALIVDDDSELYAVTSGGGVIRTA  276 (327)
T ss_dssp             EEEEECTTCEEEEEEGGGCEEEEE
T ss_pred             EEEEeCCCccEEEEcCCCeEEEEe
Confidence            444333334455555566655443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=92.94  E-value=4.2  Score=35.16  Aligned_cols=274  Identities=11%  Similarity=0.041  Sum_probs=130.7

Q ss_pred             CEEEEEeCCCcEEEEecCCCC-------CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE---cCC------
Q 012699          160 NNIASASVDGTVRIWTYDSST-------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN---VDA------  223 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd---~~~------  223 (458)
                      ..+++.+.+|.|+--.+.+..       .. ..........+..+... .....++.-+..|.++...   +..      
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~-~~~~~ke~D~~~~~~~~-~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~   81 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGV-QGAGLKQDDIVAHFFVC-STHDLILFFTTQGRVYRAKAYDLPEASRTAR   81 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC---------CCCCGGGCEEEEEEE-ETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCc-cccccCCCCEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence            456778888888865532210       11 00111222334444333 3444555556667655443   332      


Q ss_pred             CceeeeccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-----eeEEeecCCCCCc
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-----AMTVLPLGEDPPA  295 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-----~~~~~~~~~~~~~  295 (458)
                      |.++..+-.......|..+..-+   +...++..+..             |.++.-.+....     -...+.+... ..
T Consensus        82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-------------G~iKr~~l~~~~~~~r~G~~~i~lke~-D~  147 (327)
T 3uc1_A           82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-------------GLVKKSKLTDFDSNRSGGIVAVNLRDN-DE  147 (327)
T ss_dssp             CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-------------SEEEEEEGGGGCCCCSSCEESCBCCTT-CC
T ss_pred             CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-------------CEEEEeEHHHhhccccCceEEEEECCC-CE
Confidence            22211111111112344333222   34555555555             688887765422     2223334343 44


Q ss_pred             EEEEEEccCCCEEEEEecCCeEEEEeCC--CC---------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          296 ITSLCFNHNGKILAASAVDGMIHMFDMS--AG---------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      +..+........|+..+..|.+..+...  .-         .....+. ....|.++...+++.+++..+..|.++.-.+
T Consensus       148 lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l  226 (327)
T 3uc1_A          148 LVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAI  226 (327)
T ss_dssp             EEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred             EEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence            5555555555678888899998888776  21         1112222 2456777766666678999999999998887


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc--------CCCCCcEEEEEE
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--------LPHGAAITTVDW  436 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--------~~h~~~v~~~~~  436 (458)
                      ........................+..+....+...++..+.+|.+.-++...-....+.        ....+.|.++..
T Consensus       227 ~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~  306 (327)
T 3uc1_A          227 EEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIAR  306 (327)
T ss_dssp             GGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEE
T ss_pred             HHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEE
Confidence            643221100000011111111233444444445556777788888777776543221111        123456777766


Q ss_pred             CCC-CCeEEEecCCC
Q 012699          437 HPT-LPMFLTGSADH  450 (458)
Q Consensus       437 ~~~-~~~l~s~~~dg  450 (458)
                      .+. ...+.+.+++|
T Consensus       307 ~~~~~~~~~~~~~~g  321 (327)
T 3uc1_A          307 NAEESGDDNAVDANG  321 (327)
T ss_dssp             CC-------------
T ss_pred             cCCCcceEEEEecCC
Confidence            543 34455555554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.13  E-value=6.2  Score=35.16  Aligned_cols=139  Identities=12%  Similarity=0.002  Sum_probs=64.3

Q ss_pred             cEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeC--CC---CCeEEEEEcC-CCCEEEEecC-----------C
Q 012699          295 AITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPA--HD---SAISSILFGP-DETSIFSLGS-----------D  356 (458)
Q Consensus       295 ~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~---~~v~~~~~~~-~~~~l~~~~~-----------d  356 (458)
                      .+.+++++|. ...|+++...+ |+..+- .++.-..+..  ..   ..+.+++++| +...|+.+..           +
T Consensus       233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~  310 (394)
T 3b7f_A          233 DPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG  310 (394)
T ss_dssp             CEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred             ceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence            4889999985 45677776544 555442 2322222211  11   3456788876 3334444432           3


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCC-CCceeEEEEccC-CCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESS-KSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV  434 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~  434 (458)
                      +...+|...+.+....... ..+...... ......++++|. ...|++++.++.|+.-+- .+..-..+..+-..+.++
T Consensus       311 ~~~~~~~S~DgG~tW~~~~-~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D-~G~tW~~~~~~lp~~~~v  388 (394)
T 3b7f_A          311 GKPAVYVTRDAGESWQRQD-RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASAD-EGEHWQCIASHLPHIYAV  388 (394)
T ss_dssp             SSCCEEEESSTTSCCEEEC-BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESS-TTSBCEEEECSCSCEEEE
T ss_pred             CceeEEEECCCCCCceECC-CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECC-CCCCceEcccCCCCeeEE
Confidence            3345666555433221111 011110000 011245888885 355666766665554322 222222222333456677


Q ss_pred             EEC
Q 012699          435 DWH  437 (458)
Q Consensus       435 ~~~  437 (458)
                      +|.
T Consensus       389 ~~~  391 (394)
T 3b7f_A          389 QSA  391 (394)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            663

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.62  E-value=6.8  Score=34.60  Aligned_cols=174  Identities=7%  Similarity=0.084  Sum_probs=100.6

Q ss_pred             eEEEEECCCC--ceeEEeecCCC----CCcEEEEEEc---cC----CCEEEEEe-cCCeEEEEeCCCCceeeeee----C
Q 012699          272 SLTVWNMKTW--KAMTVLPLGED----PPAITSLCFN---HN----GKILAASA-VDGMIHMFDMSAGLQITGWP----A  333 (458)
Q Consensus       272 ~i~i~d~~~~--~~~~~~~~~~~----~~~i~~~~~~---~~----~~~l~~~~-~dg~i~v~d~~~~~~~~~~~----~  333 (458)
                      .|.+||+.+.  +.++.+.+...    ...+..+++.   |+    +.+++... ..+.|.|||+.+++.-+.+.    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            8999999999  88888876432    3468888888   22    34554444 35789999998876544331    1


Q ss_pred             C--------------CCCeEEEEEcCC----CCEEEEecCCCeEEEEeccCCCeeEE-eecCCcccCCCCCCCceeEEEE
Q 012699          334 H--------------DSAISSILFGPD----ETSIFSLGSDGKIIEWSLQNQGQVLW-TRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       334 ~--------------~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      .              ...+..|+++|+    ++.|+-....+. ++|.+.+.-.... ...........+....-..+++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence            0              136788999987    677776655442 3444432100000 0000000011111123345677


Q ss_pred             c-cCCCEEEEEeCCccEEEEEccC-CCcc--cccC---CCCCcEEEEEECCCCCeEEEe
Q 012699          395 D-VNGRRLLVTSGSVRAPIYQVRG-HASG--MRTL---PHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       395 s-~~g~~l~~~~~~~~i~i~~~~~-~~~~--~~~~---~h~~~v~~~~~~~~~~~l~s~  446 (458)
                      + .+|.++++--+.+.|..|+..+ .-..  ....   ..-..+.++.+.++|.+.+..
T Consensus       283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            5 6777777777888999999876 2211  1111   122357888888888755544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.50  E-value=7.3  Score=34.69  Aligned_cols=63  Identities=14%  Similarity=0.151  Sum_probs=34.8

Q ss_pred             CcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeC-----C--------CCCeEEEEEcCC-CCEEEEecCCC
Q 012699          294 PAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPA-----H--------DSAISSILFGPD-ETSIFSLGSDG  357 (458)
Q Consensus       294 ~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~--------~~~v~~~~~~~~-~~~l~~~~~dg  357 (458)
                      ..+.++.++|. ...|+++..++.|...+- .++.-..+..     +        ...+.++++.|. ...|+.+...+
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            35789999983 445566655555555432 2222221110     0        134889999985 35666666544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.29  E-value=6  Score=33.35  Aligned_cols=220  Identities=12%  Similarity=0.104  Sum_probs=110.9

Q ss_pred             CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699          192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA  271 (458)
Q Consensus       192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (458)
                      ..|..++.-  ....++. . ||.+..|-......+.. .. .....|..++.......++  . +             |
T Consensus        24 ~~i~~ia~G--~~h~~~l-~-~G~v~~wG~n~~Gqlg~-p~-~~~~~i~~ia~G~~hs~~l--~-~-------------G   81 (282)
T 3qhy_B           24 SGVDAIAGG--YFHGLAL-K-GGKVLGWGANLNGQLTM-PA-ATQSGVDAIAAGNYHSLAL--K-D-------------G   81 (282)
T ss_dssp             SSCCEEEEC--SSEEEEE-E-TTEEEEEECCSSSTTSC-CG-GGGSCCCEEEECSSEEEEE--E-T-------------T
T ss_pred             CCCcEEEeC--CCeEEEE-E-CCEEEEEeCCCCCCCCC-Cc-cCCCCEEEEEeCCCEEEEE--E-C-------------C
Confidence            457777654  3344444 4 89999997654322111 00 0112455555544333333  2 3             5


Q ss_pred             eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699          272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF  351 (458)
Q Consensus       272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  351 (458)
                      .+..|-......+-. +. .-...|..++...+  ..++-. +|.|+.|-....-.+-.-......|..++.....  .+
T Consensus        82 ~v~~wG~n~~Gqlg~-P~-~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~  154 (282)
T 3qhy_B           82 EVIAWGGNEDGQTTV-PA-EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--AL  154 (282)
T ss_dssp             EEEEEECCTTSTTCC-CG-GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EE
T ss_pred             EEEEeeCCCCCCCCC-Cc-ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EE
Confidence            888887554222111 00 01235777776544  333345 9999999865422111111123457777664433  22


Q ss_pred             EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE
Q 012699          352 SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI  431 (458)
Q Consensus       352 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v  431 (458)
                      .-. ||.+..|-.....++-         .+......+..++...+.. ++ - .+|.++.|-......+.........|
T Consensus       155 ~l~-~G~v~~wG~n~~gqlg---------~p~~~~~~v~~i~~G~~hs-~a-l-~~G~v~~wG~n~~gqlg~p~~~~~~v  221 (282)
T 3qhy_B          155 AVK-NGGVIAWGDNYFGQTT---------VPAEAQSGVDDVAGGIFHS-LA-L-KDGKVIAWGDNRYKQTTVPTEALSGV  221 (282)
T ss_dssp             EEE-TTEEEEEECCTTSTTS---------CCGGGGSSEEEEEECSSEE-EE-E-ETTEEEEEECCTTSTTCCCGGGGSSC
T ss_pred             EEE-CCEEEEecCCCCCCCC---------CceecCCCeEEEEecCCEE-EE-E-ECCeEEEEECCCCCCCCCCcccCCCc
Confidence            233 7999999876544321         1111123455555544332 23 3 58999999776543332111122356


Q ss_pred             EEEEECCCCCeEEEecCCCcEEEEe
Q 012699          432 TTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       432 ~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      ..++-.... .++..  ||.|..|-
T Consensus       222 ~~i~~G~~h-~~al~--~g~v~~wG  243 (282)
T 3qhy_B          222 SAIASGEWY-SLALK--NGKVIAWG  243 (282)
T ss_dssp             CEEEECSSC-EEEEE--TTEEEEES
T ss_pred             eEEEcCCCE-EEEEE--CCEEEEec
Confidence            666654433 23333  88888884

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=90.63  E-value=7.5  Score=33.33  Aligned_cols=121  Identities=10%  Similarity=0.060  Sum_probs=72.6

Q ss_pred             cEEEEEEcc---CCCEEEEEecCCeEEEEeCCC-------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          295 AITSLCFNH---NGKILAASAVDGMIHMFDMSA-------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       295 ~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      .|..+..-+   +..+|+..+..|.++...+..       |.....+.. .+.+..+....+...++..+.+|.+..+..
T Consensus       101 ~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~  179 (312)
T 1suu_A          101 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNS  179 (312)
T ss_dssp             CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred             EEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEH
Confidence            354443332   456788889999999888743       222333443 455666655555567888899999999988


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      ..-...-............ ....+..+..-+++..+++.+..|......+..
T Consensus       180 ~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          180 RDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             GGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             HHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            6521110000111111121 234456665555667788889999888888754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.66  E-value=10  Score=33.45  Aligned_cols=128  Identities=9%  Similarity=0.090  Sum_probs=71.2

Q ss_pred             eeEEEEECCCCceeEEee----cC--------CC----CCcEEEEEEccC----CCEEEEEecCC-eEEEEe---CCCCc
Q 012699          271 ASLTVWNMKTWKAMTVLP----LG--------ED----PPAITSLCFNHN----GKILAASAVDG-MIHMFD---MSAGL  326 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~----~~--------~~----~~~i~~~~~~~~----~~~l~~~~~dg-~i~v~d---~~~~~  326 (458)
                      +.|.++|+.+++..+...    ..        +.    ...+..++++|+    ++.|+.....+ .++-..   +++..
T Consensus       181 ~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~  260 (381)
T 3q6k_A          181 GALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG  260 (381)
T ss_dssp             TEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT
T ss_pred             CcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc
Confidence            589999999877665441    11        10    136888999997    77777665544 233332   12211


Q ss_pred             ---eeeeee--CCCCCeEEEEEc-CCCCEEEEecCCCeEEEEeccC-CC---eeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699          327 ---QITGWP--AHDSAISSILFG-PDETSIFSLGSDGKIIEWSLQN-QG---QVLWTRNCSRFCDPESSKSCRHEMALDV  396 (458)
Q Consensus       327 ---~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~  396 (458)
                         .+..+-  +....-..+++. .+|..+++--....|..|+..+ .-   .......      . ..-..+..+.+.+
T Consensus       261 ~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~------d-~~l~~pd~~~i~~  333 (381)
T 3q6k_A          261 GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT------S-SRFVFGTDISVDS  333 (381)
T ss_dssp             CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE------C-TTCCSEEEEEECT
T ss_pred             hhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE------C-CCccccCeEEECC
Confidence               122211  111233456775 5787777777888999999875 21   1111100      0 1223467777777


Q ss_pred             CCCEEEEEe
Q 012699          397 NGRRLLVTS  405 (458)
Q Consensus       397 ~g~~l~~~~  405 (458)
                      +|.+.+..+
T Consensus       334 ~g~Lwv~sn  342 (381)
T 3q6k_A          334 KGGLWFMSN  342 (381)
T ss_dssp             TSCEEEEEC
T ss_pred             CCeEEEEEC
Confidence            776555543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=89.09  E-value=10  Score=32.54  Aligned_cols=194  Identities=11%  Similarity=0.139  Sum_probs=103.8

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCc------cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC---C---
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPASR------NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA---K---  224 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~---  224 (458)
                      |+..++++.+.+|.|+--.+..-.....      ......+..+..+... ...+.++..+..|.++-.....   .   
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~-~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCV-NTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEE-ETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEE-CCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            4666788999999999876654322111      0111233445555444 4455677777888877665432   1   


Q ss_pred             ---ceee-eccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecCCC
Q 012699          225 ---RVVC-DLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLGED  292 (458)
Q Consensus       225 ---~~~~-~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~  292 (458)
                         ..+. .+..... ..+..+...+   +...++..+             ..|.++...+...     .-...+.+.. 
T Consensus        85 ~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T-------------~~G~~kr~~l~~~~~~r~~G~~~i~L~~-  149 (312)
T 1suu_A           85 SKGQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLTT-------------ASGKIARFESTDFKAVKSRGVIVIKLND-  149 (312)
T ss_dssp             ---CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEE-------------TTSEEEEEEGGGGCC----CEECBCCCT-
T ss_pred             CCCcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEEe-------------CCCeEEEEEHHHhhccCCCcEEEEecCC-
Confidence               1100 0111111 1233222211   223333333             3367777766332     2223334444 


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC---------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAG---------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      ...+..+....+...++..+.+|.+..+....-         .....+.. ...|.++..-+++..+++.+..|..+..+
T Consensus       150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~  228 (312)
T 1suu_A          150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLN  228 (312)
T ss_dssp             TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence            345555555555567888899999999987531         11222332 44566666555566788889999999998


Q ss_pred             ccCC
Q 012699          364 LQNQ  367 (458)
Q Consensus       364 ~~~~  367 (458)
                      +...
T Consensus       229 ~~e~  232 (312)
T 1suu_A          229 MSKI  232 (312)
T ss_dssp             GGGS
T ss_pred             HHHh
Confidence            8643

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=86.81  E-value=14  Score=31.74  Aligned_cols=245  Identities=12%  Similarity=0.094  Sum_probs=119.5

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC---------Cce
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA---------KRV  226 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~  226 (458)
                      |+...+++.+.+|.|+--.+....... .......+..+..+... .....++..+..|.+.-+....         |.+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~-~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEM-NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEE-ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEE-CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            566778889999999876543211000 00112233445554444 4455666667778766555421         111


Q ss_pred             eeeccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCC------CceeEEeecCCCCCcEE
Q 012699          227 VCDLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT------WKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~------~~~~~~~~~~~~~~~i~  297 (458)
                      +..+-.......|..+...+   ++..++..             +..|.++...+..      .+-...+.+... +.+.
T Consensus        82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~-------------T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv  147 (323)
T 1wp5_A           82 IANIIPIDRDEEIIKAIPINDFELNGYFLFV-------------TRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVV  147 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEE-------------ETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEE
T ss_pred             hhhccCCCCCCEEEEEEEecccCCCceEEEE-------------eCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEE
Confidence            11111011112233322111   12334443             4447888877642      223333344433 4555


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCc---------eeeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGL---------QITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  367 (458)
                      .+........++..+.+|.+..+....-.         ....+. ....|.++...+++. .+++.+..|..+..++...
T Consensus       148 ~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~  226 (323)
T 1wp5_A          148 DVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF  226 (323)
T ss_dssp             EEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred             EEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence            55555555678888899999888864311         111222 234566665444444 7888888898888887642


Q ss_pred             CeeEEeecCCccc-CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          368 GQVLWTRNCSRFC-DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       368 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      ............. ........+..+....++..++..+.+|.+.-..+..
T Consensus       227 ~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          227 EKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             CCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             cccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence            1110000000000 0111122344333333345566677777766666654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=85.05  E-value=17  Score=30.99  Aligned_cols=245  Identities=9%  Similarity=0.025  Sum_probs=118.2

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCc------cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---C----
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPASR------NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---A----  223 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~----  223 (458)
                      |+...+++.+.+|.|+--.+........      ......+..+..+... ...+.++..+..|.+.-....   .    
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~-~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA-NTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEE-ETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEE-CCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            3556788889999998776654322110      0011223344444444 345556666777876655432   2    


Q ss_pred             --CceeeeccCCCCCCceeeeeec---CCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecCCCC
Q 012699          224 --KRVVCDLNTTDAFPSVLDLKCS---PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLGEDP  293 (458)
Q Consensus       224 --~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~~  293 (458)
                        |.++..+-.......|..+...   .++..++..+             ..|.++.-.+...     +-...+.+... 
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T-------------~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-  145 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT-------------ANGTVKKTVLTEFNRLRTAGKVAIKLVDG-  145 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE-------------TTSEEEEEEGGGGTTCCTTCEESSCCCTT-
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe-------------CCCeEEEEEHHHhhccccCCeEEEEECCC-
Confidence              1111111111111233333221   1233344333             3478888766421     22233334444 


Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc---------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGL---------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL  364 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  364 (458)
                      +.+..+....+...++..+.+|.+..++...-.         ....+. ....|.++...+++..+++.+..|.++-.++
T Consensus       146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~  224 (307)
T 1zi0_A          146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAV  224 (307)
T ss_dssp             CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred             CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence            455555555555677788889998888864311         111222 2345666665555667888899999998887


Q ss_pred             cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      ........................+..+....+...++..+.+|.+.-+.+..
T Consensus       225 ~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          225 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             GGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             HHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            54321100000000111112223444433333445566677777766666654

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=84.24  E-value=21  Score=31.38  Aligned_cols=72  Identities=8%  Similarity=0.173  Sum_probs=45.2

Q ss_pred             CcEEEEEEcc---CCCEEEEEecCCeEEEEeCCCC-------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          294 PAITSLCFNH---NGKILAASAVDGMIHMFDMSAG-------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       294 ~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      ..|.++..-+   ++.+|+.++..|.++...+..-       .....+.. .+.+..+........++..+..|.+..++
T Consensus        99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~  177 (370)
T 3l6v_A           99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFG  177 (370)
T ss_dssp             CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence            3455544322   4568999999999999886432       22223333 34555555545555788888889888887


Q ss_pred             ccC
Q 012699          364 LQN  366 (458)
Q Consensus       364 ~~~  366 (458)
                      ...
T Consensus       178 ~~~  180 (370)
T 3l6v_A          178 EST  180 (370)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            653

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=81.77  E-value=24  Score=30.30  Aligned_cols=121  Identities=9%  Similarity=0.041  Sum_probs=69.0

Q ss_pred             cEEEE-EEcc--CCCEEEEEecCCeEEEEeCCC--------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          295 AITSL-CFNH--NGKILAASAVDGMIHMFDMSA--------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       295 ~i~~~-~~~~--~~~~l~~~~~dg~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      .|..+ ...+  ++.+++..+.+|.++...+..        +.....+.. .+.+..+........++..+.+|.+..++
T Consensus        93 ~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~  171 (323)
T 1wp5_A           93 EIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFD  171 (323)
T ss_dssp             CEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEE
T ss_pred             EEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence            45544 3432  256888899999999988742        222222333 24555555545556788888999998888


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccC
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~  417 (458)
                      ...-...-......+.... .....+..+..-+++. .|++.+..|..+..++..
T Consensus       172 ~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          172 ESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             GGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             HHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            7642111100011111111 1234455554434444 788888888888777754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=81.05  E-value=24  Score=29.65  Aligned_cols=240  Identities=14%  Similarity=0.098  Sum_probs=121.4

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC  228 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  228 (458)
                      .|..++....- .++. . ||.|..|-.........  .......|..++..  ....++. . ||.|..|-......+.
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCCCCCCC
Confidence            45666654432 2333 4 88898887554332211  11123356666654  3344444 4 8999999765422211


Q ss_pred             e-ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          229 D-LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       229 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      . ...   ...|..++.......+++   +             |.|..|-......+....  .....|..++...+.  
T Consensus        96 ~P~~~---~~~v~~ia~G~~hs~al~---~-------------G~v~~wG~n~~gqlg~~~--~~~~~i~~i~~G~~~--  152 (282)
T 3qhy_B           96 VPAEA---RSGVDAIAAGAWASYALK---D-------------GKVIAWGDDSDGQTTVPA--EAQSGVTALDGGVYT--  152 (282)
T ss_dssp             CCGGG---SSSEEEEEEETTEEEEEE---T-------------TEEEEEECCTTSTTSCCG--GGGSSEEEEEECSSE--
T ss_pred             CCccc---CCCeEEEECcCCEEEEEe---C-------------CeEEEecCCCCCcCCCCc--cCCCCeEEEEcccCE--
Confidence            0 011   124555555544333333   2             588888765422221110  112347666655433  


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      .+.-. ||.|+.|-....-.+..-..-...|..++..... .++.  .||.+..|=.....++-         .+.....
T Consensus       153 ~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg---------~p~~~~~  219 (282)
T 3qhy_B          153 ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT---------VPTEALS  219 (282)
T ss_dssp             EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC---------CCGGGGS
T ss_pred             EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC---------CCcccCC
Confidence            22223 7999999765422211111113467777765443 2333  59999999876544331         0111123


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCC
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL  440 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~  440 (458)
                      .|..++.......  +-. +|.++.|-.....+...    ...|.+++-.+.-
T Consensus       220 ~v~~i~~G~~h~~--al~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h  265 (282)
T 3qhy_B          220 GVSAIASGEWYSL--ALK-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA  265 (282)
T ss_dssp             SCCEEEECSSCEE--EEE-TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred             CceEEEcCCCEEE--EEE-CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence            3556655443333  333 89999997766543322    2457777765543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.68  E-value=34  Score=31.23  Aligned_cols=54  Identities=15%  Similarity=0.148  Sum_probs=32.2

Q ss_pred             ceEEEEEecCCCe-EEEEEcCCCcEEEEEcCCCc---eeeeccC--C-----CCCCceeeeeecCC
Q 012699          193 EIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKR---VVCDLNT--T-----DAFPSVLDLKCSPV  247 (458)
Q Consensus       193 ~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~---~~~~~~~--~-----~~~~~v~~~~~~~~  247 (458)
                      ..+.|+|. +++. .|+++...|.|++++.....   .+..+..  .     ........++++|+
T Consensus        15 ~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           15 QPVGALHS-GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SEEEEECC-SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CceEEEEC-CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            45788998 4553 45556778999999754321   1111111  0     11245788999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	458
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-22
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.6 bits (236), Expect = 4e-22
 Identities = 55/338 (16%), Positives = 118/338 (34%), Gaps = 33/338 (9%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           L   L HTS + C +FS+ G  +A+   + T +++     +       +   ++  +   
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL------VARLSDDSAANK 107

Query: 200 ECKSDRLLLIGTADGGIK--AWNVDAKRVV--CDLNTTDAFPSVLDLKCSPVEPIFVSAA 255
           + ++       ++D  I+   ++ D K +    +      +          ++       
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 167

Query: 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG 315
           +   + S +    G    TV           L L  +    T      +GK +AA ++D 
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR 227

Query: 316 MIHMFDMSAG-------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368
            + ++D   G        +      H  ++ S++F  D  S+ S   D  +  W+LQN  
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287

Query: 369 QVLWTRNCSRFCDPESSKSCRHE---MALDVNGRRLLVTS--GSVR-------APIYQVR 416
               ++  +      +    +     +A   N   +L  S    V         P+  ++
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 417 GHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454
           GH + + ++   A        P   +F TGS D   ++
Sbjct: 348 GHRNSVISV---AVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 7e-13
 Identities = 35/311 (11%), Positives = 86/311 (27%), Gaps = 53/311 (17%)

Query: 105 VGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIAS 164
            G     Q++     +   R +       + +     +       I    FS  G  +A+
Sbjct: 79  TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

Query: 165 ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC----------------------- 201
            + D  +RIW  ++                +                             
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 198

Query: 202 ----------------KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP-----SVL 240
                              + +  G+ D  ++ W+ +   +V  L++ +        SV 
Sbjct: 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258

Query: 241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300
            +  +      VS +      S  +++   A+    +         +        + S+ 
Sbjct: 259 SVVFTRDGQSVVSGSLD---RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSI------LFGPDETSIFSLG 354
              N + + + + D  +  +D  +G  +     H +++ S+        GP+     +  
Sbjct: 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 355 SDGKIIEWSLQ 365
            D K   W  +
Sbjct: 376 GDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 49/290 (16%), Positives = 93/290 (32%), Gaps = 18/290 (6%)

Query: 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-----VCDL 230
           Y+     S+    +       L+ + +S    L    +     +N    R         L
Sbjct: 6   YNQRANHSKPIPPFL------LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL 59

Query: 231 NTTDAFPSVLDLKCSPVEPIFVSAA--ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP 288
           + T     V  +K S       +     ++ Y  S+       S      K  + +    
Sbjct: 60  DHTSV---VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 116

Query: 289 LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET 348
                  I S+CF+ +GK LA  A D +I ++D+     +     H+  I S+ + P   
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176

Query: 349 SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV 408
            + S   D  +  W L+     L             S      +A     R + V     
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 409 RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458
              + ++           H  ++ +V +       ++GS D SV++ +L 
Sbjct: 237 GFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 7e-21
 Identities = 42/329 (12%), Positives = 96/329 (29%), Gaps = 24/329 (7%)

Query: 126 AQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN 185
               +    +++    T  GH + I    + +    + SAS DG + IW   ++      
Sbjct: 34  TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA- 92

Query: 186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245
                 + +M+  +    + +   G  +          +  V            L     
Sbjct: 93  -IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR- 150

Query: 246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305
                         +   N         T                     + SL    + 
Sbjct: 151 --------------FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196

Query: 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365
           ++  + A D    ++D+  G+    +  H+S I++I F P+  +  +   D     + L+
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL 425
              +++   + +  C   S       ++   +GR LL         ++            
Sbjct: 257 ADQELMTYSHDNIICGITS-------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309

Query: 426 PHGAAITTVDWHPTLPMFLTGSADHSVQV 454
            H   ++ +          TGS D  +++
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 5e-14
 Identities = 26/177 (14%), Positives = 60/177 (33%), Gaps = 15/177 (8%)

Query: 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246
           T    T  +         RL + G  D   K W+V            ++   +  +   P
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFP 236

Query: 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306
               F + +                +  +++++  + +           ITS+ F+ +G+
Sbjct: 237 NGNAFATGSDDA-------------TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
           +L A   D   +++D     +      HD+ +S +    D  ++ +   D  +  W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
                GH + +SC   +  G  +A+ S D  ++IW
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 36/197 (18%)

Query: 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG 354
            I ++ +  + ++L +++ DG + ++D     ++   P   S + +  + P    +   G
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 355 SDGKIIEWSLQNQGQVLWT------------------------------------RNCSR 378
            D     ++L+ +   +                                          +
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP 438
                        ++L  + R  +  +    A ++ VR          H + I  + + P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 439 TLPMFLTGSADHSVQVM 455
               F TGS D + ++ 
Sbjct: 237 NGNAFATGSDDATCRLF 253

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.9 bits (203), Expect = 4e-18
 Identities = 52/357 (14%), Positives = 102/357 (28%), Gaps = 97/357 (27%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-------------------- 181
              GH SP++   F    + + SAS D T+++W Y++                       
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 182 -------------------ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222
                                   T++     +S      +   ++  + D  IK W V 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF-----ASLTVWN 277
               V        +  ++    +    +  S +  +      + +            V  
Sbjct: 132 TGYCVKTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSA 337
             +W   +      +     +      G  L + + D  I M+D+S G+ +     HD+ 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397
           +  +LF      I S   D  +  W  +N                               
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKN------------------------------- 278

Query: 398 GRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454
                      +  +  +  H            +T++D+H T P  +TGS D +V+V
Sbjct: 279 -----------KRCMKTLNAHEH---------FVTSLDFHKTAPYVVTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (195), Expect = 4e-17
 Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 10/225 (4%)

Query: 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK 202
             GH   +S      +G++I SAS D T+++W   +        T     E + +    +
Sbjct: 97  MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC---VKTFTGHREWVRMVRPNQ 153

Query: 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC-----SPVEPIFVSAAAS 257
              L+   + D  ++ W V  K    +L         +         S  E        S
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213

Query: 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317
            + G   +      ++ +W++ T   +  L   ++   +  + F+  GK + + A D  +
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--VRGVLFHSGGKFILSCADDKTL 271

Query: 318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEW 362
            ++D      +    AH+  ++S+ F      + +   D  +  W
Sbjct: 272 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE-IMSLE 198
           L T +GH + +    F S G  I S + D T+R+W Y +        T+      + SL+
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---KTLNAHEHFVTSLD 296

Query: 199 WECKSDRLLLIGTADGGIKAW 219
           +  K+   ++ G+ D  +K W
Sbjct: 297 F-HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSL 197
           +   + +   +     +    G  + S S D T+++W   +        T+      +  
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL---MTLVGHDNWVRG 252

Query: 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257
                  + +L    D  ++ W+   KR +  LN  +    V  L      P  V+ +  
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVD 310

Query: 258 RR 259
           + 
Sbjct: 311 QT 312

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 2e-15
 Identities = 44/332 (13%), Positives = 99/332 (29%), Gaps = 30/332 (9%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------------ASRNAT 187
              GH   +  C     GN I S S D T+++W+  +                   R+  
Sbjct: 11  VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV 247
           I  G+   +L+         +            +          + DA   V D++    
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 248 EPIFVSAAASRRYGSSN----IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH 303
             + +   A+ R    +    +       + VW+ +T   +  L                
Sbjct: 130 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL----QGHTNRVYSLQF 185

Query: 304 NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363
           +G  + + ++D  I ++D+  G  I     H S  S +    +   + S  +D  +  W 
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWD 243

Query: 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGM 422
           ++    +   +  ++     +         +   +   + +        I  +    SG 
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG- 302

Query: 423 RTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454
                G  +  +    T  +   GS + + + 
Sbjct: 303 ---GSGGVVWRIRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 18/183 (9%)

Query: 276 WNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD 335
           W     K+  VL  G D   IT  C    G  + + + D  + ++    G  +     H 
Sbjct: 1   WRRGELKSPKVLK-GHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD 395
             + S     +                 +            +   +   +          
Sbjct: 58  GGVWSSQMRDN---------------IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102

Query: 396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM 455
           ++     V SGS  A +            +  G               ++G+ D  V+V 
Sbjct: 103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW 162

Query: 456 SLS 458
              
Sbjct: 163 DPE 165

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 1e-13
 Identities = 30/326 (9%), Positives = 82/326 (25%), Gaps = 22/326 (6%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR-NATIYCGTEIMSLE 198
           ++        IS  +   S + +   S DG++ ++ +D          ++     ++   
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 199 WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR 258
           +   +D  + +GT  G I   ++        L   +A   +  +     + +        
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI------A 117

Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
                 I      +          A+  L              + N   L     +  + 
Sbjct: 118 ASWDGLIEVIDPRNYGDG----VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ 173

Query: 319 MFDMSAGLQITG----WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL--- 371
            F +       G               L   ++        DG++      +QG      
Sbjct: 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 372 ---WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG 428
                R         +     + +      + L           + ++     ++     
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKF 292

Query: 429 AAITTVDWHPTLPMFLTGSADHSVQV 454
              + V    +  +    ++D + + 
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)

Query: 122 NGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP 181
            G D    + F                P++   FS     + +A  DG +  W   +   
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK- 284

Query: 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221
             +        E   ++    SD +L + T+D   K    
Sbjct: 285 --KIKNFAKFNEDSVVKI-ACSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIY 189
           ++ F    +  S  + + S N +  A+ D T +       T     ++IY
Sbjct: 286 IKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIY 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 6e-13
 Identities = 44/317 (13%), Positives = 98/317 (30%), Gaps = 32/317 (10%)

Query: 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWE 200
           L H   +     S+   ++ +    G V++W        S  + + C      I S +  
Sbjct: 48  LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL- 105

Query: 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260
                 L++G     +  W++ A         T + P+   L  SP   +  S  +    
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320
              ++++         +      +                 +++G  L    +D  +  +
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCI---------------DISNDGTKLWTGGLDNTVRSW 210

Query: 321 DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380
           D+  G Q+       S I S+ + P           G+ +   +++    +   N     
Sbjct: 211 DLREGRQLQ-QHDFTSQIFSLGYCPT----------GEWLAVGMESSNVEVLHVNKPDKY 259

Query: 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL 440
                +SC   +     G+  + T        ++    AS +      +++ + D     
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-IFQSKESSSVLSCDISVDD 318

Query: 441 PMFLTGSADHSVQVMSL 457
              +TGS D    V  +
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 8e-09
 Identities = 30/245 (12%), Positives = 58/245 (23%), Gaps = 23/245 (9%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC 201
             L   + I  C+    G  +       T+ IW   + TP  +           +L    
Sbjct: 92  DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG 261
            S       +          +   V      TD    +                  R + 
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 262 SSNI----------------------YSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299
                                     +       +   +          L      + SL
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271

Query: 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKI 359
            F + GK   ++  D +++ +    G  I       S++ S     D+  I +   D K 
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 360 IEWSL 364
             + +
Sbjct: 331 TVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 38/325 (11%), Positives = 90/325 (27%), Gaps = 23/325 (7%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           +     H   ++   ++   N I +   D    +WT    T       I           
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-KPTLVILRINRAARCVR 102

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
              +++   +G+    I     + +            P    +      P  V  AA   
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWV-CKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161

Query: 260 YGSSNIYSWGFASL------TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
                I+S     +      T W  K      +         +  +CF+ NG  +A  + 
Sbjct: 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221

Query: 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373
           D  + + D    + +    +    + ++ F  + + + + G D   + ++  +       
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAG---- 276

Query: 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITT 433
                            + +      R    +   +A         +G+ +L H  +++ 
Sbjct: 277 -----KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL-HKNSVSQ 330

Query: 434 VDWHP----TLPMFLTGSADHSVQV 454
           +            F T   D  + +
Sbjct: 331 ISVLSGGKAKCSQFCTTGMDGGMSI 355

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 5e-11
 Identities = 37/316 (11%), Positives = 89/316 (28%), Gaps = 33/316 (10%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           +      +  + C         I S   D T++IW  ++                  L  
Sbjct: 8   IHCRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNT------------LECKRILTG 53

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
              S               ++          +T   +        + +     +    R 
Sbjct: 54  HTGSVL----------CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103

Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
                +      S+ VW+M +   +T+  +     A  ++    +  I++AS  D  I +
Sbjct: 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG-DRTIKV 162

Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
           ++ S    +     H   I+ + +      + S  SD  I  W ++    +         
Sbjct: 163 WNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEEL 220

Query: 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHP 438
                  + R          ++     ++     +       +RTL  H   +  + +  
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWDLVAALD---PRAPAGTLCLRTLVEHSGRVFRLQFDE 277

Query: 439 TLPMFLTGSADHSVQV 454
                ++ S D ++ +
Sbjct: 278 F--QIVSSSHDDTILI 291

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 128 GEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174
             +         L T + H+  +   +F      I S+S D T+ IW
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE 198
           F+ T  GH   I+C ++      + S S D T+R+W  +                   + 
Sbjct: 170 FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR-----VLEGHEELVR 222

Query: 199 WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT 233
                ++ ++ G  DG IK W++ A         T
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 27/317 (8%), Positives = 73/317 (23%), Gaps = 20/317 (6%)

Query: 155 FSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG 214
             +    +   +    + +    S T   ++  +       +      +    ++    G
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 215 GIKAWNVDAKRVVCDLNTTDAF----PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270
            I   ++D  +     N +        S+     SP     V A  +     ++ Y    
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKP 121

Query: 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330
             L V++         +     P  +  +    +G +  A      + +      + +  
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 331 WPAHDSAISSI-------------LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377
              +    S+               F    T               L      +  +   
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH 437
                 +  +  +   L        +     R   Y ++     ++          V + 
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKL-IKAANLDHTYYCVAFD 300

Query: 438 PTLPMFLTGSADHSVQV 454
                   G   + + V
Sbjct: 301 KKGDKLYLGGTFNDLAV 317

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 25/255 (9%), Positives = 58/255 (22%), Gaps = 22/255 (8%)

Query: 137 VDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196
            +           +     S  G  + +           Y    P     +   G E   
Sbjct: 78  ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137

Query: 197 LEWECKSDRLLLIGTADGG--------IKAWNVDAKRVVCDLNTTDAFPSVLDLKC---- 244
           +       ++ L+  AD G        I   +V   +    L   +              
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 197

Query: 245 ------SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298
                      +  + A  +        +         ++KT K  T           T 
Sbjct: 198 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257

Query: 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK 358
           L    +        V   +  +D+    ++      D     + F      ++  G+   
Sbjct: 258 LRSPKDPNQ--IYGVLNRLAKYDLKQR-KLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314

Query: 359 IIEWSLQNQGQVLWT 373
           +  ++     + +  
Sbjct: 315 LAVFNPDT-LEKVKN 328

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 3e-08
 Identities = 34/322 (10%), Positives = 87/322 (27%), Gaps = 31/322 (9%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
            +   GH   I+    S+ G  + SA  +G +  W   +         ++    I  ++ 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM-ITGIKT 63

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
             K D  L   + D  +K        V       +                      S+ 
Sbjct: 64  TSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLS-------------------SQP 102

Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
            G +       A    +      +   L         + +  +++ + +A    D  +H+
Sbjct: 103 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162

Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
           + +S             A  + +   +  +        + +          L   N   F
Sbjct: 163 YKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 222

Query: 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP---HGAAITTVDW 436
              + +              RL   S      ++ +   +     +      +++ +V W
Sbjct: 223 HTAKVACVSWSPD-----NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277

Query: 437 HPTLPMFLTGSADHSVQVMSLS 458
                  ++   D +++  ++ 
Sbjct: 278 LNE-TTIVSAGQDSNIKFWNVP 298

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 27/284 (9%), Positives = 71/284 (25%), Gaps = 33/284 (11%)

Query: 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT----------IYCGTEI 194
            H + I         +   S S DG +++W        +              ++    +
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254
            ++E +     L+   +  G +  + +  +     +          D+K      +   A
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA----------------ITS 298
           +  R      + +    +  +W    +   +        P                  TS
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 299 LCFNHNGKILAASA-----VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353
           +  +  G I          +  +  +  +           + ++I S+ F P  + +   
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249

Query: 354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397
                    +L          + S       +       +  V 
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 35/258 (13%), Positives = 74/258 (28%), Gaps = 35/258 (13%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
            E +  H+   +  + S SG   AS  V G VRIW    +T   +         +  + W
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
           + +S R+  +G          +          T  A                +S +    
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLP------------------------------- 288
                   + F S    + K   ++   P                               
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 289 ---LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL-FG 344
                    ++  L ++ +G  +A+++ D  I +++++        P         L   
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290

Query: 345 PDETSIFSLGSDGKIIEW 362
             + ++ S+ ++G I   
Sbjct: 291 WTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SD 204
           H+  +    +S  G  IASAS D T++IW   +        TI  GT I   +     + 
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE---KTIPVGTRIEDQQLGIIWTK 293

Query: 205 RLLLIGTADGGIKAWNVD 222
           + L+  +A+G I   N +
Sbjct: 294 QALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 2/96 (2%)

Query: 297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD 356
             L     G  +        ++   + +      +  H    +     P      S    
Sbjct: 21  VVLGNTPAGDKIQ-YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79

Query: 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM 392
           G +  W    Q   +       F  P    S   E 
Sbjct: 80  GNVRIWD-TTQTTHILKTTIPVFSGPVKDISWDSES 114

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 1/39 (2%)

Query: 140 LETFLGHTS-PISCCRFSSSGNNIASASVDGTVRIWTYD 177
            +T    T           +   + S S +G +     +
Sbjct: 273 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 50/362 (13%), Positives = 105/362 (29%), Gaps = 60/362 (16%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA---------------SRNA 186
           T  GH + +  C      N + + + D  +R++   +                   +   
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 187 TIYCG-------------------------TEIMSLEWECKSDRLLLIGTADGGIKAWNV 221
            +  G                         T       E K+ + ++ G+ D  +  W +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV----SAAASRRYGSSNIYSWGFASLTVWN 277
             +  V D      +P V          + V     A+     G  NI   G    T+  
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSA 337
               +   +  L      I S  ++H  K   ++++D  I ++D+  G  +     H + 
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397
           +  +                   + S++      ++R  S      S+ +  +       
Sbjct: 246 VGLLRLSDKFLVSA-------AADGSIRGWDANDYSRKFSYHHTNLSAITTFY------V 292

Query: 398 GRRLLVTSGSVRAPIYQVR-GHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456
              +LV+    +  IY +R G       L     I +V++     +      D    +  
Sbjct: 293 SDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEI 351

Query: 457 LS 458
           L 
Sbjct: 352 LD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)

Query: 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS 179
             L     I    F      +A+   DG   +   D S
Sbjct: 319 NILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEILDFS 355

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 8e-08
 Identities = 44/318 (13%), Positives = 89/318 (27%), Gaps = 43/318 (13%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEW 199
           L+T  GH   I+    +     + S S DG +  W+  S      N        I+SL+ 
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNL-------IVSLDN 54

Query: 200 ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259
                       +     +       +  +  T   F S   +  +  +           
Sbjct: 55  ------------SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 102

Query: 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319
                             +       ++         +++  + N   +     + +   
Sbjct: 103 ----------------LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF 146

Query: 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379
                 +         +  S I   P ET I +    GKI+ + LQ++            
Sbjct: 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 206

Query: 380 CDPESSKSCRHEMALDVNGRRLLVTSGSV--RAPIYQVRGHASGMRTLP-HGAAITTVDW 436
                S     + A +      LV +GS+     IY V+     ++ L  H   +  + W
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 437 HPTLPMFLTGSADHSVQV 454
                  ++  AD  ++ 
Sbjct: 267 ETP-STLVSSGADACIKR 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 4/36 (11%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175
           ++    H   ++   + +    + S+  D  ++ W 
Sbjct: 251 IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 276 WNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAH 334
            +   ++   +  +   P    +        ++A  ++D  I ++ +   ++ I    AH
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 335 DSAISSILFGPDETSIFSLGSDGKIIEWS 363
              ++++L+    T + S G+D  I  W+
Sbjct: 258 KDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTE-IMSLEWECKSD 204
             +           + +A+ S+D  + I+      P      +    + + +L WE  + 
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIY--SVKRPMKIIKALNAHKDGVNNLLWE--TP 269

Query: 205 RLLLIGTADGGIKAWNV 221
             L+   AD  IK WNV
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 30/307 (9%), Positives = 75/307 (24%), Gaps = 19/307 (6%)

Query: 162 IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221
           I + +    + +   +             G   M                    +   ++
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281
                +  ++ +     V  L  + + P   + A           +      T   +   
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY-ESPVRLELTHFEVQPTRVALYDA 122

Query: 282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSI 341
           + ++     E P  IT L +  +G  L     D  +   +      +       S  +  
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG---TLVEDKPIQSWEAET 179

Query: 342 LFGPDETSIFSLGS--------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387
              PD  ++++                 D    + +    G +            E    
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS 447
                +  VN  +            + +  +AS ++ +P   +  +V+          G 
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNAS-IKRVPLPHSYYSVNVSTDGSTVWLGG 298

Query: 448 ADHSVQV 454
           A   +  
Sbjct: 299 ALGDLAA 305

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 19/260 (7%), Positives = 65/260 (25%), Gaps = 15/260 (5%)

Query: 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV-EPIFVSAAASRRYGSS 263
             +L       +   + +   V   +   DA P+ +    +P     + +        S 
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV-----NKSE 56

Query: 264 NIYSWGFASLTV-------WNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316
           ++      +             +  K++    L  D   +         ++         
Sbjct: 57  SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

Query: 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
           + ++D     +   + A    I+ + +  D + ++ LG D  +++       +    ++ 
Sbjct: 117 VALYDAETLSRRKAFEAPRQ-ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175

Query: 377 SRFCDPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD 435
                 +                     T+     P          +        +   +
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 436 WHPTLPMFLTGSADHSVQVM 455
                  + + + + +    
Sbjct: 236 VRIMDVFYFSTAVNPAKTRA 255

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 16/172 (9%), Positives = 46/172 (26%), Gaps = 7/172 (4%)

Query: 199 WECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR 258
                 + L   +      + +        ++ +    P V+ L      P  +   +  
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK---PFVIPLIPGSPNPTKLVPRSMT 241

Query: 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318
                   +  +   +  N+       ++PL       +             +   G++ 
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 301

Query: 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370
            +D+             + ++ +    D  ++     DGKI  + L+     
Sbjct: 302 KYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 21/321 (6%), Positives = 60/321 (18%), Gaps = 23/321 (7%)

Query: 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS 203
           +     I   R                  +  YD  T  +          + ++      
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE----ENLGNVFAMGVD 94

Query: 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS 263
                   A+   +   VD +     +        + D   S                  
Sbjct: 95  RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA------YGFPL 148

Query: 264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS 323
                    +   ++   +   +     +     +  F+ + K L   +   +    D  
Sbjct: 149 KHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 208

Query: 324 AG-------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376
                     +    P    + +     P   +  +    G+     +  +   +     
Sbjct: 209 VLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA----GEYDLNDMYKRSSPINVDPG 264

Query: 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436
                     S                     +  + +        +       +T +  
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY--DVKTRKVTEVKNNLTDLRL 322

Query: 437 HPTLPMFLTGSADHSVQVMSL 457
                  +    D  +    L
Sbjct: 323 SADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 21/192 (10%), Positives = 47/192 (24%), Gaps = 12/192 (6%)

Query: 135 VKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEI 194
           ++   +       S      F +   N+   S                  N +    ++ 
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD-----RVVLNFSFEVVSKP 220

Query: 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-VCDLNTTDAFPSVLDLKCSPVEPIFVS 253
             +     S     +       +A   D   +                +       +  S
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313
                 + +    +     L  +++KT K   V         +T L  + + K +     
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV------KNNLTDLRLSADRKTVMVRKD 334

Query: 314 DGMIHMFDMSAG 325
           DG I+ F +   
Sbjct: 335 DGKIYTFPLEKP 346

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 46/280 (16%)

Query: 131 DFPEVKVDFLETFLGH-TSPISCCRFS--SSGNNIASASVDGTVRIWTYDSSTPASRNAT 187
           D  + KV  +  F GH +S ++  +FS       + S    G V +W +     ++    
Sbjct: 46  DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV 105

Query: 188 IYCGT------EIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL 240
                       I  + W+ +  R  ++    D      + D+   + +++      +  
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165

Query: 241 DLKCSPVEPIFV--------------------------------SAAASRRYGSSNIYSW 268
            LK S                                           S   G   I   
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225

Query: 269 GFASLTVWNMKTWKAMTVLPLGEDPPAITSLC-FNHNGKILAASAVDGMIHMFDMSAGLQ 327
               ++ ++ K+ + +  +   ++P           + +  A    D  I ++D++    
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285

Query: 328 ITGWPAHDSAISSI---LFGPDETSIFSLGSDGKIIEWSL 364
           +  W      + +    +       I SL  DG +  + L
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 25/319 (7%), Positives = 75/319 (23%), Gaps = 42/319 (13%)

Query: 163 ASASVDGTVRIWTYDSSTP----------ASRNATIYCGTEIMSLEWECKSDRLLLIGTA 212
             A   GT   W   +              S     + G++         S      G  
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALAST---SFARSAKGKR 94

Query: 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272
              ++ ++      + D+   DA    +      V  I   A+++        + +G ++
Sbjct: 95  TDYVEVFDPVTFLPIADIELPDAPRFSVG---PRVHIIGNCASSACLL----FFLFGSSA 147

Query: 273 LTVWNMKTWKAMTVLPLGEDP-----PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ 327
               ++       +             A T    +    + A+           + A   
Sbjct: 148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA--- 204

Query: 328 ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES--S 385
                A + +  +         ++++ S     +        +    + +          
Sbjct: 205 -QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP-AAGATMKAAIDGNESGRKADNFR 262

Query: 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG--------MRTLPHGAAITTVDWH 437
            +    +A   N   +++ +            + S            + +G     +   
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA 322

Query: 438 P--TLPMFLTGSADHSVQV 454
                  +   +    + +
Sbjct: 323 QDGASDNYANSAGTEVLDI 341

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 21/267 (7%), Positives = 52/267 (19%), Gaps = 30/267 (11%)

Query: 156 SSSGNNIASASVDGTVRIWTYDSSTPASR-NATIYCGTEIMSLEWE---CKSDRLLLIGT 211
           S+S    A       V ++   +  P +           +         C S   LL   
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142

Query: 212 ADGG-IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270
                    +V          +   F                  +           S   
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPG-----AAATHYLGSCPA--------SLAA 189

Query: 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330
           + L                 ++  +  +   N+ G ++ A A   +      +       
Sbjct: 190 SDLAAAPAAAGIVGAQCTGAQN-CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAA 248

Query: 331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG----------QVLWTRNCSRFC 380
              ++S   +  F      + +   +   I                    +         
Sbjct: 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308

Query: 381 DPESSKSCRHEMALDVNGRRLLVTSGS 407
              +       +    +G      + +
Sbjct: 309 PISNGHDSDA-IIAAQDGASDNYANSA 334

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 25/212 (11%), Positives = 64/212 (30%), Gaps = 18/212 (8%)

Query: 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304
           S  + +++++  S+              + VWN+    A+T+  + + P  +  +  + +
Sbjct: 1   SLKQTVYIASPESQ-------------QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD 47

Query: 305 GKILAASA-VDGMIHMFDMSAG---LQITGWPAHDSAISSILFGPDETSIFSLGSD-GKI 359
            + L      +  +  + ++     L      A   +++ I        +F    + G +
Sbjct: 48  KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNV 107

Query: 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419
               L++   V             S+        L V   +         +    +    
Sbjct: 108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 167

Query: 420 SGMRTLPHGAAITTVDWHPTLPMFLTGSADHS 451
               T   GA    + +HP        +  +S
Sbjct: 168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS 199

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 27/269 (10%), Positives = 63/269 (23%), Gaps = 30/269 (11%)

Query: 156 SSSGNNIASASVDGTVRIWTYDSSTPASR-----NATIYCGTEIMSLEWECKSDRLLLIG 210
           S+  + IA       V ++   +  P +            GT             LL   
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270
            +            +    +        +     +P          S       +     
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP--TAPDTFFMHCRDGSLAK----VAFGTE 178

Query: 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG--LQI 328
            +  + + + +          D   I    ++     L      G IH  D+S+G    +
Sbjct: 179 GTPEITHTEVFHPE-------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231

Query: 329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR--NCSRFCDPESSK 386
               A   A  +  + P      +       I   +  + +             D ++ +
Sbjct: 232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 291

Query: 387 SCR--------HEMALDVNGRRLLVTSGS 407
                        + +  + + LL    +
Sbjct: 292 RLAKFEMGHEIDSINVSQDEKPLLYALST 320

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQITG 330
           +++V ++ + K    +P+G +P        + +G  +  A+A    + + D +    I  
Sbjct: 13  NISVIDVTSNKVTATIPVGSNP---MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69

Query: 331 WPAHDS 336
            PA  S
Sbjct: 70  VPAGSS 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.49
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.27
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.18
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.16
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.15
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.53
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.51
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.51
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.46
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.02
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.01
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.73
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.68
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.5
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.44
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.35
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.71
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.68
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.64
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.59
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	96.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.34
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.31
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.22
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.82
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.61
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.53
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.47
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	94.22
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	93.8
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.9
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	92.23
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.5
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.24
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.55

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-45  Score=325.40  Aligned_cols=290  Identities=15%  Similarity=0.238  Sum_probs=246.3

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc---ccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN---ATIYCGTEIMSLEWECKSDRLLLIGTADG  214 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  214 (458)
                      +.++.+ +|...|++++|+|+|++|++|+ ||.|+|||+.+.......   ....|...|.+++|+ +++++|++++.||
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s-~dg~~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSS
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-CCCCEEEEeeccc
Confidence            456666 7999999999999999999997 899999999876543222   223466789999999 7889999999999


Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .|++||+.............+...+..+.++|++..+++++.+             +.+++|++.+++......  .|..
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~--~~~~  184 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQ--GHTD  184 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-------------cccccccccccccccccc--cccc
Confidence            9999998865443332333334689999999999999999888             499999999988776653  6778


Q ss_pred             cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699          295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR  374 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  374 (458)
                      .+.+++|++++..+++++.|+.+++||+++++.+..+. |...|.+++|+|++++|++++.|+.+++||+++.....   
T Consensus       185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---  260 (337)
T d1gxra_         185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---  260 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---
T ss_pred             ccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccccccc---
Confidence            89999999999999999999999999999998887764 78899999999999999999999999999998765432   


Q ss_pred             cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                             ...+...|.+++|+|++++|++++.|+.|++||+.+++.+. ...|...|++++|+|++++|++|+.||+|+|
T Consensus       261 -------~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~v  332 (337)
T d1gxra_         261 -------LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATV  332 (337)
T ss_dssp             -------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             -------ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-EccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence                   12467789999999999999999999999999999886543 4568899999999999999999999999999


Q ss_pred             EeC
Q 012699          455 MSL  457 (458)
Q Consensus       455 w~l  457 (458)
                      |||
T Consensus       333 Wdl  335 (337)
T d1gxra_         333 YEV  335 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-43  Score=312.82  Aligned_cols=287  Identities=15%  Similarity=0.252  Sum_probs=244.6

Q ss_pred             CCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccc
Q 012699           22 NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLE  101 (458)
Q Consensus        22 ~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~  101 (458)
                      +|...|+|++| +++|++|+||+ |+.++|||+..+.....+                                      
T Consensus        49 ~H~~~V~~v~f-s~~g~~latg~-dg~V~iWd~~~~~~~~~~--------------------------------------   88 (337)
T d1gxra_          49 NHGEVVCAVTI-SNPTRHVYTGG-KGCVKVWDISHPGNKSPV--------------------------------------   88 (337)
T ss_dssp             CCSSCCCEEEE-CSSSSEEEEEC-BSEEEEEETTSTTCCSCS--------------------------------------
T ss_pred             CCCCcEEEEEE-CCCCCEEEEEE-CCEEEEEEccCCccccee--------------------------------------
Confidence            79999999999 99999999998 789999998655211000                                      


Q ss_pred             cccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC
Q 012699          102 FEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP  181 (458)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~  181 (458)
                                                           ......+|.+.|.+++|+|++++|++|+.||+|++||+.....
T Consensus        89 -------------------------------------~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~  131 (337)
T d1gxra_          89 -------------------------------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             -------------------------------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             -------------------------------------EEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc
Confidence                                                 1223457999999999999999999999999999999987655


Q ss_pred             CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCC
Q 012699          182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG  261 (458)
Q Consensus       182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  261 (458)
                      ........+...+..++|+ +++.++++++.|+.+++|++.+++.......+.  ..+.+++|++++..+++++.+    
T Consensus       132 ~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~~~~~~~~~~d----  204 (337)
T d1gxra_         132 RIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLD----  204 (337)
T ss_dssp             EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT----
T ss_pred             ccccccccccccccccccc-ccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc----
Confidence            4333444567789999999 788899999999999999999998887766554  689999999999999999888    


Q ss_pred             CcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEE
Q 012699          262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSI  341 (458)
Q Consensus       262 ~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~  341 (458)
                               |.+++||+++++.+..+.   +...|.+++|+|++++|++|+.|+.+++||+++++.. ....|...|+++
T Consensus       205 ---------~~v~i~d~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v  271 (337)
T d1gxra_         205 ---------NTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL  271 (337)
T ss_dssp             ---------SEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred             ---------ccccccccccceeecccc---cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceE
Confidence                     599999999998887764   5567999999999999999999999999999987765 457899999999


Q ss_pred             EEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          342 LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       342 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      +|+|++++|++++.||.|++||+.+.+.....          .+...|.+++|+|++++|++++.|++|+|||+
T Consensus       272 ~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~----------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEc----------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999999987655432          25567999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-43  Score=308.77  Aligned_cols=289  Identities=18%  Similarity=0.311  Sum_probs=257.9

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ...+|+||.++|++++|+|++++|+||+.||+|+|||+.+++...  ....|...|.+++|+ +++.+++++..++.+.+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~--~~~~h~~~V~~~~~~-~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFD-HSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCCCE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCcEEEEeee-ccccccccccccccccc
Confidence            345789999999999999999999999999999999999887654  334577899999999 78889999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      |+....+....+..+.  ..+..+.++|++..+++++.+             +.+++||+++++....+.  .|...+.+
T Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~  148 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHD--HNVSSVSIMPNGDHIVSASRD-------------KTIKMWEVQTGYCVKTFT--GHREWVRM  148 (317)
T ss_dssp             EETTSSCEEECCCCCS--SCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEE--CCSSCEEE
T ss_pred             cccccccccccccccc--ccceeeeccCCCceEEeeccC-------------cceeEeecccceeeeEEc--cCCCccee
Confidence            9999888777666554  678999999999999999988             599999999998888775  56778999


Q ss_pred             EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC--------------------CEEEEecCCCe
Q 012699          299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE--------------------TSIFSLGSDGK  358 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~dg~  358 (458)
                      ++|+|++++|++++.|+.|++|++.+++....+..|...+.+++|+|++                    .++++++.|+.
T Consensus       149 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  228 (317)
T d1vyhc1         149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT  228 (317)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred             eecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence            9999999999999999999999999999999999999999999998753                    46899999999


Q ss_pred             EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699          359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP  438 (458)
Q Consensus       359 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~  438 (458)
                      |++||+++.......         ..+...+.+++|+|++++|++++.||.|++||+.+.+.+..+.+|..+|++++|+|
T Consensus       229 i~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         229 IKMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS
T ss_pred             EEEEECCCCcEEEEE---------eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            999999986544322         24667899999999999999999999999999999988888889999999999999


Q ss_pred             CCCeEEEecCCCcEEEEe
Q 012699          439 TLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       439 ~~~~l~s~~~dg~v~iw~  456 (458)
                      ++++|++|+.||+|+|||
T Consensus       300 ~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEeC
Confidence            999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-42  Score=313.83  Aligned_cols=294  Identities=20%  Similarity=0.356  Sum_probs=238.9

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc----------------ccccCCCceEEEEEecCCCeEEE
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN----------------ATIYCGTEIMSLEWECKSDRLLL  208 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~~l~  208 (458)
                      +|++.|+|++|+|||++||+|+ |++|+|||+.+++.....                ....+...|.+++|+ +++++|+
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~  137 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLA  137 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEEC-CCCCcce
Confidence            6999999999999999999987 899999999876643211                112345679999999 6889999


Q ss_pred             EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699          209 IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP  288 (458)
Q Consensus       209 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~  288 (458)
                      +|+.||.|++||...++.......+.  ..|.++.+++++..+++++.+             +.+++||.++........
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEE
T ss_pred             eccccccccccccccccccccccccc--ccccccccccccccccccccc-------------eeeeeeeccccccccccc
Confidence            99999999999999999888877655  689999999999999999887             599999999887776664


Q ss_pred             cCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee-------eCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          289 LGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW-------PAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       289 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                      .  + ....++.+++ ++++|++|+.||.|++||.+++.....+       .+|...|.+++|+|++++|++++.|+.|+
T Consensus       203 ~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~  279 (388)
T d1erja_         203 I--E-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  279 (388)
T ss_dssp             C--S-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             c--c-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEE
Confidence            2  3 3345555555 7899999999999999999988776554       36888999999999999999999999999


Q ss_pred             EEeccCCCeeEEeecC---CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEE-
Q 012699          361 EWSLQNQGQVLWTRNC---SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW-  436 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~-  436 (458)
                      +||+.+..........   ........+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+|.+.|+++++ 
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence            9999875443211110   011122346778999999999999999999999999999999888888899999999975 


Q ss_pred             -----CCCCCeEEEecCCCcEEEEeCC
Q 012699          437 -----HPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       437 -----~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                           +|++++||||+.||+|+||++.
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                 6789999999999999999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-41  Score=303.98  Aligned_cols=291  Identities=16%  Similarity=0.235  Sum_probs=241.9

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..++|+||.++|++++|+|++++||||+.||+|+|||+.+++...  ....+..+|.+++|+ +++.++++++.|+.++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~v~~~-~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYA-PSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--EEECSCSCEEEEEEC-TTSSEEEEEETTCCEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE--EEecccccEEeeEee-ccceeeeeecccceee
Confidence            4678899999999999999999999999999999999998877643  234567899999999 7889999999999999


Q ss_pred             EEEcCCCce----eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699          218 AWNVDAKRV----VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP  293 (458)
Q Consensus       218 ~wd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~  293 (458)
                      +|+......    ...+..+.   ..........+..+.....+             .....+............  .+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~~~  184 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHT---GYLSCCRFLDDNQIVTSSGD-------------TTCALWDIETGQQTTTFT--GHT  184 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCS---SCEEEEEEEETTEEEEEETT-------------TEEEEEETTTTEEEEEEE--CCS
T ss_pred             cccccccccccccceeccccc---cccccccccccccccccccc-------------cccccccccccccccccc--ccc
Confidence            999876542    22222222   22333333344455555554             378888877766555554  445


Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      ..+....+.+.+.++++|+.|+.|++||+++++++..+.+|..+|++++|+|++++|++++.|+.|++||+.........
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~  264 (340)
T d1tbga_         185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999876544322


Q ss_pred             ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                             ....+...+..++|+|++++|++|+.||.|++||+.+.+.+..+.+|..+|++++|+|++++|++|+.||.|+
T Consensus       265 -------~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         265 -------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             -------CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             -------ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEE
Confidence                   2234566799999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             EEe
Q 012699          454 VMS  456 (458)
Q Consensus       454 iw~  456 (458)
                      |||
T Consensus       338 iWd  340 (340)
T d1tbga_         338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.1e-42  Score=302.04  Aligned_cols=293  Identities=13%  Similarity=0.124  Sum_probs=240.3

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      .+++.+..++++|+|+.|+.+. ++.+.+||+.+.....  ....|...|.+++|+ +++++|++|+.||+|++||+.++
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~--~~~~H~~~v~~~~~s-p~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE--IYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE--EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE--EEcCCCCCEEEEEEe-CCCCeEeccccCceEeeeeeecc
Confidence            4556677899999999999885 5679999998776543  234678899999999 67999999999999999999988


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      ..........+..+|.+++|+|+++.+++++.+..           ..+++|++++++....+  ..|...|.+++|+|+
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~-----------~~~~v~~~~~~~~~~~l--~~h~~~v~~v~~~~~  157 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-----------RFGHVFLFDTGTSNGNL--TGQARAMNSVDFKPS  157 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-----------CSEEEEETTTCCBCBCC--CCCSSCEEEEEECSS
T ss_pred             ccccccccccccCcccccccccccccccccccccc-----------ccccccccccccccccc--ccccccccccccccc
Confidence            75543333334478999999999999998876431           36899999988877665  467788999999999


Q ss_pred             CCE-EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          305 GKI-LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       305 ~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      +++ |++|+.||.|++||+++++....+..|..+|++++|+|++++|++++.|+.|++||+.+.........  ......
T Consensus       158 ~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~~  235 (311)
T d1nr0a1         158 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED--DSLKNV  235 (311)
T ss_dssp             SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC--TTSSSC
T ss_pred             ceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccc--cccccc
Confidence            885 78899999999999999999999999999999999999999999999999999999998765443221  222334


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC---CcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG---AAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      .|...|.+++|+|++++|++|+.|+.|+|||+++++....+..|.   ..+.++.|  ++..|++++.||.|++||++
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            678889999999999999999999999999999887665555443   34445555  55679999999999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-41  Score=296.76  Aligned_cols=290  Identities=14%  Similarity=0.182  Sum_probs=227.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      ..+.++||.++|++++|+|++++|+||+.||+|++||+.+++.... ....|...|.+++|+ +++. +++++.|+.+++
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~h~~~v~~v~~~-~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-FPDVHATMITGIKTT-SKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC-SSCSCSSCEEEEEEC-TTSC-EEEEETTTEEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EcCCCCCcEEEEEee-ccce-eecccceeeEEE
Confidence            5678999999999999999999999999999999999988776532 223467889999999 5555 566778999999


Q ss_pred             EEcCCCceeee-ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          219 WNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      |+......... .........+..++++|++..++++..+              .+.+|+...  .. ...   ....+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~--------------~i~~~~~~~--~~-~~~---~~~~~~  140 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK--------------HIAIYSHGK--LT-EVP---ISYNSS  140 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS--------------EEEEEETTE--EE-EEE---CSSCEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccc--------------ccccccccc--cc-ccc---cccccc
Confidence            99875432211 1111223568899999999988877654              899998543  22 222   123478


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC  376 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  376 (458)
                      +++|+|++++|++|+.||.|++||+++++... ....|..+|.+++|+|++++|++++.|+.|++||+.+.....     
T Consensus       141 ~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-----  215 (299)
T d1nr0a2         141 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA-----  215 (299)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES-----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence            99999999999999999999999998776543 345789999999999999999999999999999998765432     


Q ss_pred             CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--C-CCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699          377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--P-HGAAITTVDWHPTLPMFLTGSADHSVQ  453 (458)
Q Consensus       377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~~~dg~v~  453 (458)
                       .......|...|.+++|+|++++|++++.|+.|++||+++........  . +...+.++.| +++++|++++.||+|+
T Consensus       216 -~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         216 -HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIK  293 (299)
T ss_dssp             -CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEE
T ss_pred             -ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEE
Confidence             222334577889999999999999999999999999998765433222  3 4456777665 5677899999999999


Q ss_pred             EEeCC
Q 012699          454 VMSLS  458 (458)
Q Consensus       454 iw~l~  458 (458)
                      +|||+
T Consensus       294 iWdl~  298 (299)
T d1nr0a2         294 FWNVP  298 (299)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            99985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-41  Score=302.12  Aligned_cols=325  Identities=16%  Similarity=0.258  Sum_probs=245.8

Q ss_pred             hccccCCCcce-eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           17 LSRLKNNSETI-KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        17 ~~~l~~h~~~i-~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..+|+||...| +|++|   ++++||||+.|++++|||..+++                                     
T Consensus         5 ~~tL~GH~~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~~-------------------------------------   44 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKK-------------------------------------   44 (355)
T ss_dssp             EEEEECCSSSCEEEEEE---ETTEEEEEETTTEEEEEETTTTE-------------------------------------
T ss_pred             cEEECCcCCCcEEEEEE---CCCEEEEEeCCCeEEEEECCCCc-------------------------------------
Confidence            35799998885 77766   68899999999999999876541                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                                                                 .+.++.+|.++|++++|+|+ .+|++|+.|++|++|+
T Consensus        45 -------------------------------------------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2          45 -------------------------------------------FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             -------------------------------------------EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             -------------------------------------------EEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence                                                       44567799999999999986 5899999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-----------C-------
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-----------P-------  237 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-----------~-------  237 (458)
                      +......................+. +++..+++++.|+.|++||+.+.............           .       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             ccccccccccccccccccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9877654332222233344555566 78889999999999999999876654332211100           0       


Q ss_pred             -ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699          238 -SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM  316 (458)
Q Consensus       238 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  316 (458)
                       ......+.+++..++.+..+             +.+++||+++++......  .+...+.++.++|++.++++++.|+.
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d-------------~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~  224 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYD-------------NTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTT  224 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             ccccccccccccceeeeeccc-------------ceeeeeecccccceeeee--ccccccccccccccceeeecccccce
Confidence             01112344556666666666             599999999988877664  55677999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE-EEEc
Q 012699          317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE-MALD  395 (458)
Q Consensus       317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s  395 (458)
                      |++||++++..+..+.+|...|.++++++  ++|++++.||.|++||+++.......           +...+.. ..++
T Consensus       225 i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~~  291 (355)
T d1nexb2         225 IRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSY-----------HHTNLSAITTFY  291 (355)
T ss_dssp             EEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEE-----------ECTTCCCCCEEE
T ss_pred             EEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceeccc-----------ccCCceEEEEEc
Confidence            99999999999999999999999999974  59999999999999999977554332           1222333 4567


Q ss_pred             cCCCEEEEEeCCccEEEEEccCCCccc-ccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          396 VNGRRLLVTSGSVRAPIYQVRGHASGM-RTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      +++++|+++ .|+.|++||+++++.+. .+.+|..+|++++|+|+ .++++++.||.++||-
T Consensus       292 ~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         292 VSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             ECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            788877665 58899999999887664 45589999999999987 5788899999866554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-40  Score=291.93  Aligned_cols=289  Identities=17%  Similarity=0.264  Sum_probs=252.4

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      +...|+||...|++++| +|++++||||+.|++++||+.+++.                                     
T Consensus         9 ~~~~L~GH~~~I~~l~~-sp~~~~l~s~s~Dg~i~iWd~~~~~-------------------------------------   50 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGD-------------------------------------   50 (317)
T ss_dssp             CSCEEECCSSCEEEEEE-CSSSSEEEEEESSSCEEEEETTTCC-------------------------------------
T ss_pred             ccEEEcCCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCC-------------------------------------
Confidence            34679999999999999 9999999999999999999876551                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                                                                 .+.++.+|.+.|.+++|+|++.+++++..++.+.+|+
T Consensus        51 -------------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          51 -------------------------------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             -------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             -------------------------------------------EEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence                                                       2335668999999999999999999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      ........  ....+...+.++.|+ +++..+++++.|+.+++||+++++....+..+.  ..+..++++|++..+++++
T Consensus        88 ~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~  162 (317)
T d1vyhc1          88 FQGFECIR--TMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCS  162 (317)
T ss_dssp             TTSSCEEE--CCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSEEEEEE
T ss_pred             cccccccc--ccccccccceeeecc-CCCceEEeeccCcceeEeecccceeeeEEccCC--CcceeeecccCCCEEEEEe
Confidence            87665432  334566788999999 778889999999999999999999888877655  6789999999999999999


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC--------------------CEEEEEecCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG--------------------KILAASAVDG  315 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg  315 (458)
                      .+             |.+++|+..+++....+.  .+...+.+++++|++                    .++++++.|+
T Consensus       163 ~d-------------~~v~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         163 ND-------------QTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             TT-------------SCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             CC-------------CeEEEEeeccceeeEEEe--cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            88             599999999988877764  566789999988753                    4789999999


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD  395 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  395 (458)
                      .|++||+++++++..+.+|...|.+++|+|++++|++++.||.|++||+.+.+.....         ..|...|++++|+
T Consensus       228 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~h~~~V~~~~~s  298 (317)
T d1vyhc1         228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------NAHEHFVTSLDFH  298 (317)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE---------ECCSSCEEEEEEC
T ss_pred             EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE---------cCCCCCEEEEEEc
Confidence            9999999999999999999999999999999999999999999999999876544322         2467789999999


Q ss_pred             cCCCEEEEEeCCccEEEEE
Q 012699          396 VNGRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       396 ~~g~~l~~~~~~~~i~i~~  414 (458)
                      |++++|++++.|++|+|||
T Consensus       299 ~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         299 KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-40  Score=301.40  Aligned_cols=288  Identities=11%  Similarity=0.117  Sum_probs=231.8

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      +.++|+|++|+|++++||+|+.||.|+|||+.+++.........|..+|.+++|+ +++++|++++.|+.|++||+.++.
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs-p~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC-CCCCEEEEEECCCeEEEEeecccc
Confidence            3478999999999999999999999999999877644333445678899999999 678899999999999999999887


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE--EeecCCCCCcEEEEEEcc
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--VLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~  303 (458)
                      ....+....+...+.+++|+|+++.+++++.+             +.+++|++.......  ......|...|.+++|+|
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d-------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  151 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP  151 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccceeeccc-------------Ccceeeeeecccccccccccccccccccccccccc
Confidence            66665555555789999999999999999988             499999887655432  233456778899999999


Q ss_pred             CCCEEEEEecCCeEEEEeCCCC------------------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          304 NGKILAASAVDGMIHMFDMSAG------------------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      ++++|++|+.|+.|++||....                  +.+.....|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence            9999999999999999997542                  2455567889999999999999999999999999999999


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc-----------------------
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM-----------------------  422 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~-----------------------  422 (458)
                      +.......         ..+..+|.+++|+|++++|++|. |+.+++|.........                       
T Consensus       232 ~~~~~~~~---------~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (371)
T d1k8kc_         232 KKMAVATL---------ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF  301 (371)
T ss_dssp             GTTEEEEE---------ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred             cccceeee---------ecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeE
Confidence            87654432         23566799999999998887655 6666665543211000                       


Q ss_pred             ------------------ccCCCCCcEEEEEECCCCC----eEEEecCCCcEEEEeC
Q 012699          423 ------------------RTLPHGAAITTVDWHPTLP----MFLTGSADHSVQVMSL  457 (458)
Q Consensus       423 ------------------~~~~h~~~v~~~~~~~~~~----~l~s~~~dg~v~iw~l  457 (458)
                                        ....|.+.|+++++.|.+.    .|+|+|.||.|+|||+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         302 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                              0013888999999988653    5899999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-39  Score=286.19  Aligned_cols=280  Identities=15%  Similarity=0.231  Sum_probs=224.6

Q ss_pred             eeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEe
Q 012699           76 ASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRF  155 (458)
Q Consensus        76 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  155 (458)
                      +++++++++.++.+. ++.+.+|++....                                  ..+.+.+|.+.|++++|
T Consensus        22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~----------------------------------~~~~~~~H~~~v~~~~~   66 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLT----------------------------------DTEIYTEHSHQTTVAKT   66 (311)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSS----------------------------------CCEEECCCSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEEe-CCEEEEEECCCCc----------------------------------eeEEEcCCCCCEEEEEE
Confidence            345555566666653 5567888875533                                  44567899999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC--CCcEEEEEcCCCceeeeccCC
Q 012699          156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA--DGGIKAWNVDAKRVVCDLNTT  233 (458)
Q Consensus       156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~  233 (458)
                      +|+|++||+|+.||+|++||+.+...........+..+|.+++|+ ++++++++++.  +..+++|++++++....+..+
T Consensus        67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h  145 (311)
T d1nr0a1          67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ  145 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC
T ss_pred             eCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccc-cccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999887765444445577899999999 67778888775  456999999999888777665


Q ss_pred             CCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699          234 DAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA  312 (458)
Q Consensus       234 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  312 (458)
                      .  ..|.+++|+|+++. +++++.+             |.|++||+++++....+.  .|...|++++|+|++++|++++
T Consensus       146 ~--~~v~~v~~~~~~~~~l~sgs~d-------------~~i~i~d~~~~~~~~~~~--~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         146 A--RAMNSVDFKPSRPFRIISGSDD-------------NTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             S--SCEEEEEECSSSSCEEEEEETT-------------SCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEE
T ss_pred             c--cccccccccccceeeecccccc-------------cccccccccccccccccc--cccccccccccCcccccccccc
Confidence            4  68999999999986 6667766             599999999988777664  6778899999999999999999


Q ss_pred             cCCeEEEEeCCCCceeeeee-------CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          313 VDGMIHMFDMSAGLQITGWP-------AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       313 ~dg~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                      .|+.|++||+.+++.+..+.       +|.+.|.+++|+|++++|++|+.||.|++||+++++.......        ..
T Consensus       209 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~--------~~  280 (311)
T d1nr0a1         209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV--------GT  280 (311)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--------CS
T ss_pred             ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC--------CC
Confidence            99999999999887766553       6889999999999999999999999999999988754432211        11


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      ......+.+.+++++|++++.||.|++||++
T Consensus       281 ~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         281 RIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            1122334556667789999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-40  Score=295.97  Aligned_cols=302  Identities=12%  Similarity=0.153  Sum_probs=236.5

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      +.++|+|++| +|||++||+|+.|+.++||+.+.++.                                           
T Consensus         6 ~~~pIt~~~~-s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------   41 (371)
T d1k8kc_           6 LVEPISCHAW-NKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------   41 (371)
T ss_dssp             CSSCCCEEEE-CTTSSEEEEECSSSEEEEEEEETTEE-------------------------------------------
T ss_pred             CCCCeEEEEE-CCCCCEEEEEeCCCEEEEEECCCCCE-------------------------------------------
Confidence            4578999999 99999999999999999998654410                                           


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA  182 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  182 (458)
                                                         ..+..+++|.++|++++|+|++++|++|+.|++|++||+.++...
T Consensus        42 -----------------------------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_          42 -----------------------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             -----------------------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             -----------------------------------EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence                                               144567899999999999999999999999999999999876654


Q ss_pred             CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee--ccCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699          183 SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD--LNTTDAFPSVLDLKCSPVEPIFVSAAASRRY  260 (458)
Q Consensus       183 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  260 (458)
                      .......+...|.+++|+ ++++.|++++.|+.+++|+++.......  .....+...|.+++|+|++..+++++.|   
T Consensus        87 ~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D---  162 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---  162 (371)
T ss_dssp             EEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT---
T ss_pred             cccccccccccccccccc-cccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccC---
Confidence            333344567789999999 6788999999999999999876653222  2223334689999999999999999988   


Q ss_pred             CCcceeeccceeEEEEECCCCce----------------eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 012699          261 GSSNIYSWGFASLTVWNMKTWKA----------------MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA  324 (458)
Q Consensus       261 ~~~~~~~~~~g~i~i~d~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~  324 (458)
                                |.+++||......                ........|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus       163 ----------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         163 ----------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             ----------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ----------cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence                      5999999865321                12334457778899999999999999999999999999999


Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec-C---------------------------
Q 012699          325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN-C---------------------------  376 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~---------------------------  376 (458)
                      ++.+..+..|..+|.+++|+|++++|++|+ |+.+++|............. .                           
T Consensus       233 ~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (371)
T d1k8kc_         233 KMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE  311 (371)
T ss_dssp             TTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred             ccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEe
Confidence            999999999999999999999998777655 67777766544322111100 0                           


Q ss_pred             ----CcccCCCCCCCceeEEEEccCC----CEEEEEeCCccEEEEEccCC
Q 012699          377 ----SRFCDPESSKSCRHEMALDVNG----RRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       377 ----~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~~~~i~i~~~~~~  418 (458)
                          ........|...|.++++.|.+    ..+++++.||.|++||+++.
T Consensus       312 ~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                0000112367789999998855    35899999999999999764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-40  Score=298.64  Aligned_cols=295  Identities=15%  Similarity=0.230  Sum_probs=237.7

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccccccee--------------eeeccCCceeeeeCCccce
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATH--------------MGSAEMGQTWASSRPALSR   84 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~   84 (458)
                      ...+|...|+|++| ++||++||+|+ |++++||+...+.....+..              ...........+++++++.
T Consensus        57 ~~~~H~~~V~~l~f-s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          57 KSLDHTSVVCCVKF-SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EEEECSSCCCEEEE-CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             eeCCCCCcEEEEEE-CCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            34479999999999 99999999997 89999999987765422210              0111223345577788889


Q ss_pred             eEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEE
Q 012699           85 FATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIAS  164 (458)
Q Consensus        85 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  164 (458)
                      +|++++.|+.+++|+.....                                  .+..+.+|...|.+++|++++..+++
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~----------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~  180 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRK----------------------------------IVMILQGHEQDIYSLDYFPSGDKLVS  180 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTE----------------------------------EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cceecccccccccccccccc----------------------------------cccccccccccccccccccccccccc
Confidence            99999999999999875533                                  45567799999999999999999999


Q ss_pred             EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC-----CCCCce
Q 012699          165 ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT-----DAFPSV  239 (458)
Q Consensus       165 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-----~~~~~v  239 (458)
                      ++.++.+++||..+.....   .........++.+.+.++.+|++++.||.|++||..++.....+...     .+...|
T Consensus       181 ~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v  257 (388)
T d1erja_         181 GSGDRTVRIWDLRTGQCSL---TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV  257 (388)
T ss_dssp             EETTSEEEEEETTTTEEEE---EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred             cccceeeeeeecccccccc---ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE
Confidence            9999999999998765432   33455566778888788999999999999999999998877665432     234679


Q ss_pred             eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE----------eecCCCCCcEEEEEEccCCCEEE
Q 012699          240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV----------LPLGEDPPAITSLCFNHNGKILA  309 (458)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~  309 (458)
                      .+++|+|++..+++++.+             |.|++||++++.....          .....|...|.+++|+|++++|+
T Consensus       258 ~~l~~s~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         258 YSVVFTRDGQSVVSGSLD-------------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             EEEEECTTSSEEEEEETT-------------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred             EEEEECCCCCEEEEEECC-------------CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEE
Confidence            999999999999999988             5999999986543321          22235677899999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE------cCCCCEEEEecCCCeEEEEecc
Q 012699          310 ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILF------GPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       310 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      +|+.||.|++||+++++++.++++|.+.|.++++      +|++++|++|+.||+|++|+++
T Consensus       325 sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999999999999999999999999999975      6789999999999999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-38  Score=282.66  Aligned_cols=289  Identities=16%  Similarity=0.249  Sum_probs=238.3

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      .++|+||...|+|++| +|++++||||+.|++++|||..++.                                      
T Consensus        48 ~~tL~GH~~~I~~l~~-s~~~~~l~sgs~Dg~v~iWd~~~~~--------------------------------------   88 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTN--------------------------------------   88 (340)
T ss_dssp             EEEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred             eEEECCCCCCEEEEEE-CCCCCEEEEEECCCceeeeecccce--------------------------------------
Confidence            3568899999999999 9999999999999999999876551                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                .+..+.+|..+|.+++|+|+++++++|+.|+.+++|+.
T Consensus        89 ------------------------------------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          89 ------------------------------------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ------------------------------------------EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             ------------------------------------------eEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence                                                      33456689999999999999999999999999999998


Q ss_pred             CCCCCCCccc--cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          177 DSSTPASRNA--TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       177 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      ..........  ...+.........  .....+.....+.....+...............  ..+....+.+....++++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSEEEEE
T ss_pred             cccccccccceeccccccccccccc--ccccccccccccccccccccccccccccccccc--eeEeeeccccccceeEEe
Confidence            7655432221  1122233333333  345667788888999999888776665554443  578889999999999999


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee--e
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW--P  332 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~  332 (458)
                      ..+             +.|++||+++++....+.  .|...|++++|+|++++|++|+.||.|++||++....+..+  .
T Consensus       203 ~~d-------------~~v~i~d~~~~~~~~~~~--~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         203 ACD-------------ASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             ETT-------------TEEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             ecC-------------ceEEEEECCCCcEEEEEe--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence            888             599999999998888774  67889999999999999999999999999999988776655  3


Q ss_pred             CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699          333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI  412 (458)
Q Consensus       333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i  412 (458)
                      .+...|.+++|+|++++|++++.||.|++||+.+.+.....         ..|...|.+++|+|++++|++|+.||.|+|
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---------~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL---------AGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE---------cCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence            56678999999999999999999999999999876554322         257788999999999999999999999999


Q ss_pred             EE
Q 012699          413 YQ  414 (458)
Q Consensus       413 ~~  414 (458)
                      ||
T Consensus       339 Wd  340 (340)
T d1tbga_         339 WN  340 (340)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=282.60  Aligned_cols=323  Identities=15%  Similarity=0.241  Sum_probs=250.3

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..+.|+||...|.+ ++ +++|++||||+.|++++|||..+++                                     
T Consensus         8 ~~~~l~GH~~~V~s-~~-~~~g~~l~sgs~Dg~i~vWd~~~~~-------------------------------------   48 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CL-QFCGNRIVSGSDDNTLKVWSAVTGK-------------------------------------   48 (342)
T ss_dssp             CCEEEECSTTSCEE-EE-EEETTEEEEEETTSCEEEEETTTCC-------------------------------------
T ss_pred             cCEEECCcCCceEE-EE-EECCCEEEEEeCCCeEEEEECCCCC-------------------------------------
Confidence            45679999999854 35 5589999999999999999876551                                     


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT  175 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  175 (458)
                                                                 +++++.+|.+.|.+++|+|+  +|++|+.|+++++|+
T Consensus        49 -------------------------------------------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          49 -------------------------------------------CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             -------------------------------------------EEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             -------------------------------------------EEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence                                                       44567789999999999875  999999999999999


Q ss_pred             cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699          176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      ........  ........+.....   ....+..+..|+.+.+|+..+++....+....    .......+....++.++
T Consensus        84 ~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          84 AETGECIH--TLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTTTEEEE--EECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEE
T ss_pred             ccccccee--cccccceeEeeeec---ccccccccccceeEEEeecccccceeeeeccc----ccceeeccccceeeeec
Confidence            87655432  12222334444443   35567888999999999999988776655443    12233445566777777


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD  335 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  335 (458)
                      .+             +.+++||.+..+....+.  +|...+..  +++++.++++|+.||.|++||++.++++..+.+|.
T Consensus       155 ~d-------------~~i~~~d~~~~~~~~~~~--~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~  217 (342)
T d2ovrb2         155 YD-------------FMVKVWDPETETCLHTLQ--GHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ  217 (342)
T ss_dssp             TT-------------SCEEEEEGGGTEEEEEEC--CCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred             CC-------------CeEEEeecccceeeEEEc--Cccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccc
Confidence            76             599999999888777664  55544544  45578899999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       336 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ..+.++++++  ++|++++.|+.|++||+...+.....      .....+...+.++.+  +++++++++.||.|++||+
T Consensus       218 ~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         218 SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTL------QGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEE------CSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEET
T ss_pred             cceeEEecCC--CEEEEEcCCCEEEEEecccccccccc------cccceeeeceeeccc--CCCeeEEEcCCCEEEEEEC
Confidence            9999888764  59999999999999999876654432      122334555555555  5679999999999999999


Q ss_pred             cCCCcccccC-----CCCCcEEEEEECCCCCeEEEecCCCc----EEEEeCC
Q 012699          416 RGHASGMRTL-----PHGAAITTVDWHPTLPMFLTGSADHS----VQVMSLS  458 (458)
Q Consensus       416 ~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~----v~iw~l~  458 (458)
                      ++++.+..+.     +|...|++++|+|++.+||+|+.||+    |++||++
T Consensus       288 ~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            9887655442     58889999999999999999999986    9999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-37  Score=273.64  Aligned_cols=290  Identities=13%  Similarity=0.159  Sum_probs=223.5

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      ..+.++||...|++++| +|||++|+||+.|+++++||.+++..                                    
T Consensus         4 ~~~~~~GH~~~V~~l~~-s~dg~~l~s~s~Dg~v~vWd~~~~~~------------------------------------   46 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGIS------------------------------------   46 (299)
T ss_dssp             EEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCE------------------------------------
T ss_pred             cceEcCCCCCCcEEEEE-CCCCCEEEEEcCCCeEEEEECCCCcE------------------------------------
Confidence            46789999999999999 99999999999999999999765521                                    


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                                  ++.+ .+|...|++++|+|++++ ++++.|+++++|
T Consensus        47 --------------------------------------------~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~   81 (299)
T d1nr0a2          47 --------------------------------------------NRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV   81 (299)
T ss_dssp             --------------------------------------------EECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred             --------------------------------------------EEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence                                                        1111 368899999999999975 566779999999


Q ss_pred             ecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699          175 TYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS  253 (458)
Q Consensus       175 d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  253 (458)
                      +........ ......+...+.+++|+ +++.++++++ ++.+++|+.....  .... .   ..+..++++|++..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~~~~~--~~~~-~---~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSHGKLT--EVPI-S---YNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEETTEEE--EEEC-S---SCEEEEEECTTSCEEEE
T ss_pred             ccCCccccccccccccccccccccccc-cccccccccc-ccccccccccccc--cccc-c---ccccccccccccccccc
Confidence            987654322 12223456778999999 5666665554 5689999854322  2211 1   35788999999999999


Q ss_pred             eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee---ee
Q 012699          254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI---TG  330 (458)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~  330 (458)
                      ++.+             |.+++||+++++...... ..|...|.+++|+|++++|++++.|+.|++||+.++...   ..
T Consensus       154 g~~d-------------g~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         154 GGQD-------------SKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EETT-------------SEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cccc-------------cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            9888             599999998876554332 356788999999999999999999999999999886554   35


Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699          331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA  410 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i  410 (458)
                      +.+|..+|++++|+|++++|++++.||.|++||+++........      ....+...+..+ +++++++|++++.|+.|
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~------~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i  292 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------KGAHAMSSVNSV-IWLNETTIVSAGQDSNI  292 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------TTSSTTSCEEEE-EEEETTEEEEEETTSCE
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE------ecCCCCCcEEEE-EECCCCEEEEEeCCCEE
Confidence            56789999999999999999999999999999998764322111      111233445555 45667899999999999


Q ss_pred             EEEEcc
Q 012699          411 PIYQVR  416 (458)
Q Consensus       411 ~i~~~~  416 (458)
                      ++||+.
T Consensus       293 ~iWdl~  298 (299)
T d1nr0a2         293 KFWNVP  298 (299)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            999984

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-36  Score=262.55  Aligned_cols=270  Identities=17%  Similarity=0.141  Sum_probs=217.7

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +++++|+||.++|++++|+|    |+||+.||+|++||+.+..       ..|...|.+++++ + +..+++++.|++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~-~-~~~~~s~s~D~~v~   70 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNS-K-AQEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------CCCCSCEEEEECC-S-TTCCEEEETTTEEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------CCCCCCEEEEEec-C-CCeEEEEeeccccc
Confidence            47889999999999999987    9999999999999986542       3567789999997 4 34689999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +|++...+.         ...+..+.+.+++..++++..+              .+.+|+..+++....+....   .  
T Consensus        71 ~w~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~--  122 (287)
T d1pgua2          71 VNGITKHEF---------GSQPKVASANNDGFTAVLTNDD--------------DLLILQSFTGDIIKSVRLNS---P--  122 (287)
T ss_dssp             ETTEEEEEC---------SSCEEEEEECSSSEEEEEETTS--------------EEEEEETTTCCEEEEEECSS---C--
T ss_pred             ccccccccc---------ccceeeeeeccCCceEEEeecc--------------cceeeeccceeeeeeccccc---e--
Confidence            999765331         1346778888888887776654              88999999988888876432   2  


Q ss_pred             EEEEccCCCEEEEEecCC-eEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699          298 SLCFNHNGKILAASAVDG-MIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN  375 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  375 (458)
                      ..+++|++..+++++.++ .+++|++...+....+. .|..++++++|+|++++|++++.||.|++||+.+.....    
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----  198 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----  198 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccc----
Confidence            345677888888888775 79999998766555443 577899999999999999999999999999998764432    


Q ss_pred             CCcccCCCCCCCceeEEEEccC----------CCEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCCCeEE
Q 012699          376 CSRFCDPESSKSCRHEMALDVN----------GRRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       376 ~~~~~~~~~~~~~v~~~~~s~~----------g~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~  444 (458)
                          .....|...|.+++|+|+          +.+|++|+.|+.|++|+++..... ....+|...|++++|+|++ .|+
T Consensus       199 ----~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~  273 (287)
T d1pgua2         199 ----SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLV  273 (287)
T ss_dssp             ----CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEE
T ss_pred             ----ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEE
Confidence                122356778999999874          468999999999999999775444 4445899999999999986 588


Q ss_pred             EecCCCcEEEEeC
Q 012699          445 TGSADHSVQVMSL  457 (458)
Q Consensus       445 s~~~dg~v~iw~l  457 (458)
                      +++.||+|++|++
T Consensus       274 s~g~D~~v~iW~i  286 (287)
T d1pgua2         274 SSGADACIKRWNV  286 (287)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEECCCeEEEEEE
Confidence            9999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-35  Score=259.97  Aligned_cols=288  Identities=10%  Similarity=0.088  Sum_probs=214.5

Q ss_pred             CCeEEEEeCCCCCEEEEEeCCC-cEEEEecCCCCCCCccccccC-CCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCC
Q 012699          148 SPISCCRFSSSGNNIASASVDG-TVRIWTYDSSTPASRNATIYC-GTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      +.+++++|+|+++.|+.++.+. .|+.|+..............| ...|.+++|+|. ++.+|++|+.||+|++||+..+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3467899999999999886554 356676554443322233334 457999999973 6789999999999999999765


Q ss_pred             ceeeecc------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699          225 RVVCDLN------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS  298 (458)
Q Consensus       225 ~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~  298 (458)
                      +....+.      ...+..+|.+++|++++..+++++.+..           +.+.+|+..+++....+  .+|...|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~h~~~v~~  164 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-----------NFGVFISWDSGNSLGEV--SGHSQRINA  164 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-----------CSEEEEETTTCCEEEEC--CSCSSCEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeecccc-----------ceEEEEeecccccceee--eeccccccc
Confidence            5332221      1223468999999999999888765421           48999999988877766  467889999


Q ss_pred             EEEccCCCE-EEEEecCCeEEEEeCCCCceeeee---eCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699          299 LCFNHNGKI-LAASAVDGMIHMFDMSAGLQITGW---PAHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWT  373 (458)
Q Consensus       299 ~~~~~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  373 (458)
                      ++|+|++.+ +++++.|+.+++||+...+....+   ..|...|.+++|+|+ +++|++++.|+.|++||+++++.....
T Consensus       165 ~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l  244 (325)
T d1pgua1         165 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  244 (325)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             ccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccc
Confidence            999998865 678999999999999877665544   466788999999996 688999999999999999887554322


Q ss_pred             ecCCcccCCCCCCCceeEEEEc---cCCCEEEEEeCCccEEEEEccCCCcccccCCCC--CcEEEEEECCC-CCeEEEec
Q 012699          374 RNCSRFCDPESSKSCRHEMALD---VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG--AAITTVDWHPT-LPMFLTGS  447 (458)
Q Consensus       374 ~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~l~s~~  447 (458)
                      .         .+...+..+.|+   |+|++|++++.|+.|+|||+++++.+..+..|.  ..+..+++.+. +.+|++++
T Consensus       245 ~---------~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  315 (325)
T d1pgua1         245 E---------DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS  315 (325)
T ss_dssp             C---------BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             c---------ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEE
Confidence            1         233334444444   689999999999999999999887665555433  33444444433 23789999


Q ss_pred             CCCcEEEEeC
Q 012699          448 ADHSVQVMSL  457 (458)
Q Consensus       448 ~dg~v~iw~l  457 (458)
                      .||.|+||||
T Consensus       316 ~dg~i~vwdl  325 (325)
T d1pgua1         316 LDGTLNFYEL  325 (325)
T ss_dssp             TTSCEEEEET
T ss_pred             CCCEEEEEEC
Confidence            9999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-34  Score=256.05  Aligned_cols=285  Identities=13%  Similarity=0.236  Sum_probs=222.2

Q ss_pred             eeeeeccCCCCe-EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          139 FLETFLGHTSPI-SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       139 ~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      ...+|+||.+.| +|++|  ++++|+||+.||+|+|||+.+++...  ....|..+|.+++|+ + +.+|++++.|+.|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~--~l~~H~~~V~~l~~s-~-~~~l~s~s~D~~i~   77 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYA-H-GGILVSGSTDRTVR   77 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE--EEECCSSCEEEEEEE-T-TTEEEEEETTCCEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE--EEECCCCCEEEEEEc-C-CCEEEEEecccccc
Confidence            456799999886 56665  67899999999999999998877653  344578899999998 4 35799999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec--------
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL--------  289 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~--------  289 (458)
                      +|+....+..................+.+++..+++++.+             +.|++||+++.........        
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETT-------------SEEEEEECCC-----------CCCEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCC-------------CcEEEEEccCCceeccccccceeccce
Confidence            9999999887776666555566777888999999999888             5999999987654332210        


Q ss_pred             -------------CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699          290 -------------GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       290 -------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  356 (458)
                                   ..+...+  ..+.+++++++++..|+.|++||+++++.+....++...+.++.|+|+++++++++.|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  222 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD  222 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred             eccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccccc
Confidence                         0111222  3455678899999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE-E
Q 012699          357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV-D  435 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~-~  435 (458)
                      +.|++||+.+.......         ..|...|.+++++  +++|++++.||.|++||+++...  .+..|...+.++ .
T Consensus       223 ~~i~i~d~~~~~~~~~~---------~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~  289 (355)
T d1nexb2         223 TTIRIWDLENGELMYTL---------QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITT  289 (355)
T ss_dssp             SCEEEEETTTCCEEEEE---------CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE--EEEEECTTCCCCCE
T ss_pred             ceEEeeecccccccccc---------ccccccccccccc--cceeeeeecccccccccccccce--ecccccCCceEEEE
Confidence            99999999987554332         2466778888886  47999999999999999987643  334566666665 4


Q ss_pred             ECCCCCeEEEecCCCcEEEEeCC
Q 012699          436 WHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       436 ~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      +++++++|++| .||.|+|||+.
T Consensus       290 ~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         290 FYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEECSSEEEEE-ETTEEEEEETT
T ss_pred             EcCCCCEEEEE-eCCEEEEEECC
Confidence            56677666655 58999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-34  Score=253.62  Aligned_cols=304  Identities=10%  Similarity=0.088  Sum_probs=227.3

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc-cccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR-NATIYCGTEIMSLEWECKSDRLLLIGTADGGI  216 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  216 (458)
                      +.++.+++|++.|++|+|+|++++||+|+.||+|+|||+........ .....|..+|.+++|+|+++.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            46677889999999999999999999999999999999987654322 22345788999999997788899999999999


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe----ecCCC
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL----PLGED  292 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~----~~~~~  292 (458)
                      ++|++..+........... .......+.++...+++++.+             +.+++||++........    .....
T Consensus        82 ~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~wd~~~~~~~~~~~~~~~~~~~  147 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEA-NLGICRICKYGDDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLNSNNT  147 (342)
T ss_dssp             EEECSSSSSSEEECBSCCC-CSCEEEEEEETTTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred             eeeeccccccccccccccc-ccccccccccccccccccccc-------------cccceeeccccccceeeecccccccc
Confidence            9999998877766655443 334455666777888888877             49999998754433222    11122


Q ss_pred             CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee---eeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCC
Q 012699          293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG---WPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      ........+.+.+..+++++.|+.|++||++..+....   ...+...+.+..+.| ++..+++++.||.+.+|++....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         148 KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            23345667788889999999999999999987654332   234455566666655 67789999999999999987543


Q ss_pred             eeE------EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCe
Q 012699          369 QVL------WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPM  442 (458)
Q Consensus       369 ~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  442 (458)
                      ...      .............+...+.+++|+|++++|++|+.||.|++||+++.+.+..+.. ...+..++|+|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~-~~~~~~~~~s~~~~~  306 (342)
T d1yfqa_         228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIACSDNI  306 (342)
T ss_dssp             CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSSEEEEEEECSSE
T ss_pred             ceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecC-CCCCEEEEEEeCCCE
Confidence            221      1111112233345667789999999999999999999999999998876655543 234556778889999


Q ss_pred             EEEecCCCcEEEEe
Q 012699          443 FLTGSADHSVQVMS  456 (458)
Q Consensus       443 l~s~~~dg~v~iw~  456 (458)
                      |++++.|+.+++|.
T Consensus       307 l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         307 LCLATSDDTFKTNA  320 (342)
T ss_dssp             EEEEEECTHHHHCS
T ss_pred             EEEEEcCCcEEEee
Confidence            99998888777664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=257.15  Aligned_cols=302  Identities=12%  Similarity=0.122  Sum_probs=211.2

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc----cccCCCceEEE------EEecCCCeEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA----TIYCGTEIMSL------EWECKSDRLLL  208 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~v~~~------~~~~~~~~~l~  208 (458)
                      .....++|.+.|+++++++  ++++|++.|++|+|||..+.+......    ...+...+..+      ...+.+..+++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            4556789999999999875  599999999999999987654322111    11122222222      22212345788


Q ss_pred             EEcCCCcEEEEEcCCCceeee--------ccCCCCCCceeeeeecCCC-----CeEEEeecccCCCCcceeeccceeEEE
Q 012699          209 IGTADGGIKAWNVDAKRVVCD--------LNTTDAFPSVLDLKCSPVE-----PIFVSAAASRRYGSSNIYSWGFASLTV  275 (458)
Q Consensus       209 ~~~~dg~i~~wd~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~i~i  275 (458)
                      +++.||.+++|++........        +........+..+++.++.     ..+++++.+             |.+++
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------g~i~v  150 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTTYI  150 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCEEE
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCC-------------CcEEE
Confidence            999999999999765432111        1111122345666666653     456666666             69999


Q ss_pred             EECCCCce---------------e-EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee------eC
Q 012699          276 WNMKTWKA---------------M-TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW------PA  333 (458)
Q Consensus       276 ~d~~~~~~---------------~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~~  333 (458)
                      |++.....               . .......+...+.+++|+|++ +|++|+.||.|++||+.+++++..+      .+
T Consensus       151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~  229 (393)
T d1sq9a_         151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN  229 (393)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C
T ss_pred             EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccc
Confidence            99743210               0 111122344568899999998 8999999999999999998876544      46


Q ss_pred             CCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecC----CcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          334 HDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNC----SRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       334 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      |..+|++++|+|++++|++++.|+   .|++||+.++.........    .......+|...|++++|+|++++|++++.
T Consensus       230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            899999999999999999999987   4999999987654433211    122233468889999999999999999999


Q ss_pred             CccEEEEEccCCCcccccCCCCCc---------------------EEEEEECCCC----------CeEEEecCCCcEEEE
Q 012699          407 SVRAPIYQVRGHASGMRTLPHGAA---------------------ITTVDWHPTL----------PMFLTGSADHSVQVM  455 (458)
Q Consensus       407 ~~~i~i~~~~~~~~~~~~~~h~~~---------------------v~~~~~~~~~----------~~l~s~~~dg~v~iw  455 (458)
                      |++|++||+.+++.+..+.+|...                     +.++.|.+.+          +.|++++.|+.||+|
T Consensus       310 D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~  389 (393)
T d1sq9a_         310 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  389 (393)
T ss_dssp             TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEE
Confidence            999999999988777666666543                     4556665542          347888889999998


Q ss_pred             e
Q 012699          456 S  456 (458)
Q Consensus       456 ~  456 (458)
                      .
T Consensus       390 ~  390 (393)
T d1sq9a_         390 R  390 (393)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-33  Score=244.59  Aligned_cols=272  Identities=14%  Similarity=0.169  Sum_probs=216.0

Q ss_pred             HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699           15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS   94 (458)
Q Consensus        15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   94 (458)
                      +.++.|+||..+|++++| ++    |+||+.|+++++|+...+                                     
T Consensus         4 ~~i~~l~gH~~~I~~l~~-s~----l~sgs~Dg~v~~Wd~~~~-------------------------------------   41 (287)
T d1pgua2           4 EVLKTISGHNKGITALTV-NP----LISGSYDGRIMEWSSSSM-------------------------------------   41 (287)
T ss_dssp             EEEEEECCCSSCEEEEET-TT----TEEEETTSCEEETTTTEE-------------------------------------
T ss_pred             ceeEEECCCCCceEEEEE-Cc----EEEEeCCCeEEEEECCCC-------------------------------------
Confidence            467899999999999999 76    899999999999985432                                     


Q ss_pred             ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699           95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW  174 (458)
Q Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  174 (458)
                                                                      .++|...|.++++++++ .+++++.|+++++|
T Consensus        42 ------------------------------------------------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2          42 ------------------------------------------------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             ------------------------------------------------ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             ------------------------------------------------CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence                                                            12688899999998765 57899999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA  254 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  254 (458)
                      ++...+         ....+..+.+. +++..++++ .++.+.+|+..+++....+....   .  ..++++++..++++
T Consensus        73 ~~~~~~---------~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~v~  136 (287)
T d1pgua2          73 GITKHE---------FGSQPKVASAN-NDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS---P--GSAVSLSQNYVAVG  136 (287)
T ss_dssp             TEEEEE---------CSSCEEEEEEC-SSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS---C--EEEEEECSSEEEEE
T ss_pred             cccccc---------cccceeeeeec-cCCceEEEe-ecccceeeeccceeeeeeccccc---e--eeeeeccCcceeee
Confidence            976432         23456677777 566655554 55678999999988887766542   2  34567778888887


Q ss_pred             ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee-eeeC
Q 012699          255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT-GWPA  333 (458)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~  333 (458)
                      +.+.            +.+++|++...+....+. ..+...+++++|+|++.+|++|+.||.|++||+.+++... .+.+
T Consensus       137 ~~~~------------~~v~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  203 (287)
T d1pgua2         137 LEEG------------NTIQVFKLSDLEVSFDLK-TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF  203 (287)
T ss_dssp             ETTT------------SCEEEEETTEEEEEEECS-SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred             cccc------------ceeeeeeccccceeeeee-eccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence            7764            489999998766555543 3466789999999999999999999999999999887654 4678


Q ss_pred             CCCCeEEEEEcCC----------CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699          334 HDSAISSILFGPD----------ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV  403 (458)
Q Consensus       334 ~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  403 (458)
                      |..+|.+++|+|.          +.+|++++.|++|++||+++......        ....|...|.+++|+|++ .|++
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~--------~~~~h~~~V~~v~~~~~~-~l~s  274 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------ALNAHKDGVNNLLWETPS-TLVS  274 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE--------ETTSSTTCEEEEEEEETT-EEEE
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE--------EeCCCCCCeEEEEECCCC-EEEE
Confidence            9999999999874          46899999999999999987544332        233577889999999987 5788


Q ss_pred             EeCCccEEEEEc
Q 012699          404 TSGSVRAPIYQV  415 (458)
Q Consensus       404 ~~~~~~i~i~~~  415 (458)
                      ++.|+.|++|++
T Consensus       275 ~g~D~~v~iW~i  286 (287)
T d1pgua2         275 SGADACIKRWNV  286 (287)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCeEEEEEE
Confidence            999999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=239.22  Aligned_cols=277  Identities=14%  Similarity=0.274  Sum_probs=217.7

Q ss_pred             eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      .++...+|...|+|++|  ++++||||+.||+|+|||+.+++...  ....|..+|.+++|+   +++|++|+.|+.|++
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~--~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQYD---ERVIITGSSDSTVRV   79 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEECC---SSEEEEEETTSCEEE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE--EEecCCCCEeeeecc---cceeecccccccccc
Confidence            55566789999999765  78899999999999999999887654  334577899999874   679999999999999


Q ss_pred             EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCCCCCcEE
Q 012699          219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGEDPPAIT  297 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~~~~~i~  297 (458)
                      |++..+..........    .....+.+....++++..+             +.+.+|+........ ......+...+.
T Consensus        80 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~  142 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHC----EAVLHLRFNNGMMVTCSKD-------------RSIAVWDMASPTDITLRRVLVGHRAAVN  142 (293)
T ss_dssp             EESSSCCEEEEECCCC----SCEEEEECCTTEEEEEETT-------------SCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             cccccccccccccccc----cccccccccccceeecccc-------------cceeEeeccccccccccccccccccccc
Confidence            9999988776655443    2233455556667777666             599999998765433 233456777787


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .+.+.+  ..+++++.|+.|++||+++++.+..+.++...+..+.++  +.++++++.|+.|++||+++........   
T Consensus       143 ~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---  215 (293)
T d1p22a2         143 VVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE---  215 (293)
T ss_dssp             EEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             cceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec---
Confidence            777664  578899999999999999999999999999999888875  5689999999999999999876544321   


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc---------ccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS---------GMRTLPHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                            .+...+  ..+++++.+|++++.||.|++||+.....         ...+.+|.+.|++++|+  +++|+|||.
T Consensus       216 ------~~~~~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~  285 (293)
T d1p22a2         216 ------GHEELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSH  285 (293)
T ss_dssp             ------CCSSCE--EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCS
T ss_pred             ------ccceee--eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEec
Confidence                  223333  35678899999999999999999864322         23345799999999995  568999999


Q ss_pred             CCcEEEEe
Q 012699          449 DHSVQVMS  456 (458)
Q Consensus       449 dg~v~iw~  456 (458)
                      ||+|+|||
T Consensus       286 Dg~i~iWD  293 (293)
T d1p22a2         286 DDTILIWD  293 (293)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-33  Score=249.06  Aligned_cols=254  Identities=14%  Similarity=0.218  Sum_probs=197.8

Q ss_pred             eeeeeccC-CCCeEEEEeCC--CCCEEEEEeCCCcEEEEecCCCCCCCccc------cccCCCceEEEEEecCCCeEEEE
Q 012699          139 FLETFLGH-TSPISCCRFSS--SGNNIASASVDGTVRIWTYDSSTPASRNA------TIYCGTEIMSLEWECKSDRLLLI  209 (458)
Q Consensus       139 ~~~~~~~h-~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~  209 (458)
                      ....+.+| ...|++++|+|  ++++|++|+.||+|+|||+..+.......      ...+..+|.+++|+ +++.++++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~  132 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCV  132 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC-CCCCccce
Confidence            34566777 46899999998  57899999999999999987655432211      12356789999999 66777766


Q ss_pred             Ec--CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699          210 GT--ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       210 ~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      ++  .++.+++|+.++++.+..+..+.  ..+.+++|+|+++. +++++.+             |.+++||....+....
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~d-------------~~v~~~d~~~~~~~~~  197 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHS--QRINACHLKQSRPMRSMTVGDD-------------GSVVFYQGPPFKFSAS  197 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCS--SCEEEEEECSSSSCEEEEEETT-------------TEEEEEETTTBEEEEE
T ss_pred             eeccccceEEEEeecccccceeeeecc--cccccccccccccceEEEeecc-------------ccccccccccccccee
Confidence            54  46789999999999988887655  78999999999886 5566666             5999999998776665


Q ss_pred             ee-cCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEc---CCCCEEEEecCCCeEEE
Q 012699          287 LP-LGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFG---PDETSIFSLGSDGKIIE  361 (458)
Q Consensus       287 ~~-~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i  361 (458)
                      +. ...+...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.+|..++..+.|+   |++++|++++.|+.|++
T Consensus       198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV  277 (325)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEE
Confidence            53 3466778999999996 6899999999999999999999999999988877666665   68999999999999999


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEc
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~  415 (458)
                      ||+++++......       ...+...+..+++.+. +.+|++++.||.|++||+
T Consensus       278 wd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         278 WDVTTSKCVQKWT-------LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTTTEEEEEEE-------CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EECCCCCEEEEEE-------ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9999765443221       1123333444454443 347889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=250.75  Aligned_cols=336  Identities=16%  Similarity=0.142  Sum_probs=231.7

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeee--c-cCC-----ceeeeeC-CccceeEe
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGS--A-EMG-----QTWASSR-PALSRFAT   87 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~--~-~~~-----~~~~~~~-~~~~~~l~   87 (458)
                      ....++|...|.++++ +  +++++|++.|++++||+........+......  . ..+     ....... ..+..+++
T Consensus         7 ~~~~~~H~~~I~~v~~-~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSA-C--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEE-C--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eecCCcccCccEEEEE-e--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            3467899999999999 5  46999999999999999766543211110000  0 000     0011222 22456788


Q ss_pred             eccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-----CCEE
Q 012699           88 NMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-----GNNI  162 (458)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l  162 (458)
                      +++.|+.+++|++..............                        .......+...+..++|.++     +.++
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKL------------------------DLLDSDMKKHSFWALKWGASNDRLLSHRL  139 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEE------------------------CCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             EEeCCCcEEEEEccCCCceeeeecccc------------------------ceeeeccCCCceEEEEEecCCCcccccEE
Confidence            999999999999765432111100000                        00011234556777777764     4678


Q ss_pred             EEEeCCCcEEEEecCCCCCCC----------------ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699          163 ASASVDGTVRIWTYDSSTPAS----------------RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV  226 (458)
Q Consensus       163 ~s~~~dg~v~iwd~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  226 (458)
                      ++++.||++++|++.......                ......+...+.+++|+ +++ +|++|+.||+|++||+.+++.
T Consensus       140 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg-~lasgs~Dg~i~iwd~~~~~~  217 (393)
T d1sq9a_         140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRP  217 (393)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEEC-CCC-EEEEEeCCCcEEEEeeccccc
Confidence            999999999999985432100                00111233458899999 444 889999999999999999988


Q ss_pred             eeeccCC----CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec-----------CC
Q 012699          227 VCDLNTT----DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL-----------GE  291 (458)
Q Consensus       227 ~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~-----------~~  291 (458)
                      +..+...    .|..+|.+++|+|++++|++++.|+..          +.|++||+++++....+..           .+
T Consensus       218 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~----------~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~g  287 (393)
T d1sq9a_         218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF----------GCITLYETEFGERIGSLSVPTHSSQASLGEFA  287 (393)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE----------EEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             ccccccccccccccceEEEcccccccceeeeecCCCCc----------ceeeecccccceeeeeeccccccccceeeeec
Confidence            7665432    345789999999999999999887411          3699999999888776642           36


Q ss_pred             CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeE----EEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699          292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAIS----SILFGPDETSIFSLGSDGKIIEWSLQNQ  367 (458)
Q Consensus       292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~~~dg~i~iwd~~~~  367 (458)
                      |...|++++|+|++++|++|+.|++|++||+++++++.++++|.+.|.    .++|+|++..+++++   ...++.+...
T Consensus       288 H~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  364 (393)
T d1sq9a_         288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKG  364 (393)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC---EEEEEEECTT
T ss_pred             ccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc---cceEEECccC
Confidence            888999999999999999999999999999999999999999998876    488999998876554   2223322221


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      ...       .              ......+.+++++.|+.|++|..
T Consensus       365 ~~~-------~--------------~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         365 WRS-------G--------------MGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             TSB-------S--------------TTCTTSCEEEEEETTTEEEEEEE
T ss_pred             cee-------c--------------cccCCCCEEEEEEcCCeEEEEeC
Confidence            100       0              00123456888899999999964

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-32  Score=235.63  Aligned_cols=285  Identities=16%  Similarity=0.273  Sum_probs=211.2

Q ss_pred             hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699           17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS   96 (458)
Q Consensus        17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~   96 (458)
                      +....+|...|+|++|   ||++||||+.|++++|||.++++                                      
T Consensus         8 i~~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~--------------------------------------   46 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLE--------------------------------------   46 (293)
T ss_dssp             EECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCC--------------------------------------
T ss_pred             EeccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCc--------------------------------------
Confidence            4455678888999776   78999999999999999875441                                      


Q ss_pred             ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699           97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY  176 (458)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  176 (458)
                                                                +++++++|.++|++++|  ++++|++|+.|++|++|++
T Consensus        47 ------------------------------------------~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          47 ------------------------------------------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             ------------------------------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             ------------------------------------------EEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence                                                      45567899999999987  5679999999999999999


Q ss_pred             CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc-CCCCCCceeeeeecCCCCeEEEee
Q 012699          177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN-TTDAFPSVLDLKCSPVEPIFVSAA  255 (458)
Q Consensus       177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~  255 (458)
                      ..+.....   . .........+. .....++++..++.+.+|+..+........ ...+...+..+.+.  ...+++++
T Consensus        83 ~~~~~~~~---~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s  155 (293)
T d1p22a2          83 NTGEMLNT---L-IHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS  155 (293)
T ss_dssp             SSCCEEEE---E-CCCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             cccccccc---c-ccccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceec--cccccccc
Confidence            88765421   1 11222223333 456678899999999999998765432221 22233456555554  44566666


Q ss_pred             cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699          256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD  335 (458)
Q Consensus       256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  335 (458)
                      .+             +.+++||+++++....+.  ++...+..+.++  +.++++++.||.|++||+++.+.+..+.+|.
T Consensus       156 ~d-------------~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  218 (293)
T d1p22a2         156 GD-------------RTIKVWNTSTCEFVRTLN--GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE  218 (293)
T ss_dssp             TT-------------SEEEEEETTTCCEEEEEE--CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             CC-------------CceeeecCCCCcEEEEEc--ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccc
Confidence            66             599999999999888775  555667777665  5689999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699          336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ  414 (458)
Q Consensus       336 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~  414 (458)
                      ..+..+  ++++.+|++++.||.|++||+....................|...|.+++|  ++++|++++.|++|++||
T Consensus       219 ~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         219 ELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEEE--ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             eeeeec--cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            888764  567789999999999999998754322111111111223457788999888  567899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-32  Score=241.33  Aligned_cols=310  Identities=14%  Similarity=0.075  Sum_probs=221.1

Q ss_pred             hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699           16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI   95 (458)
Q Consensus        16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i   95 (458)
                      .++.+++|.+.|++++| +|++++||+|+.|++++||+++.+....                                  
T Consensus         3 ~v~~~~~h~d~I~~l~f-sp~~~~L~s~s~Dg~v~iwd~~~~~~~~----------------------------------   47 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKNV----------------------------------   47 (342)
T ss_dssp             EEECSSCCSSCEEEEEE-EGGGTEEEEEETTSEEEEEEEETTTTEE----------------------------------
T ss_pred             eEEcCCCCCCCEEEEEE-eCCCCEEEEEECCCeEEEEEccCCCcce----------------------------------
Confidence            56788999999999999 9999999999999999999876541000                                  


Q ss_pred             cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEE
Q 012699           96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIW  174 (458)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw  174 (458)
                                                                 .+....+|.++|.+++|+|+ +.+|++|+.||+|++|
T Consensus        48 -------------------------------------------~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_          48 -------------------------------------------DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             -------------------------------------------EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             -------------------------------------------EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence                                                       11223369999999999986 4579999999999999


Q ss_pred             ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee----eeccCCCCCCceeeeeecCCCCe
Q 012699          175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV----CDLNTTDAFPSVLDLKCSPVEPI  250 (458)
Q Consensus       175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~  250 (458)
                      ++........  ...+........+.+++...+++++.++.+++||++.+...    ................+.+.+..
T Consensus        85 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          85 DLIGSPSFQA--LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             CSSSSSSEEE--CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eccccccccc--ccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            9987765432  22223333333333367888999999999999998654322    22222222234456677788888


Q ss_pred             EEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-cCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCcee
Q 012699          251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQI  328 (458)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~  328 (458)
                      +++++.+             +.|++||+...+...... .......+.+..+.+ ++..+++++.||.+.+|+.......
T Consensus       163 ~~~~~~d-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         163 LIVGMNN-------------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             EEEEEST-------------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeecCC-------------CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            8888887             599999998765443221 123334455555554 6789999999999999997643221


Q ss_pred             ---------------eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          329 ---------------TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       329 ---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                                     .....|...+++++|+|++++|++|+.||.|++||+.+.+......          .......++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~----------~~~~~~~~~  299 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----------KFNEDSVVK  299 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----------CCSSSEEEE
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec----------CCCCCEEEE
Confidence                           1123566789999999999999999999999999999875543221          123456788


Q ss_pred             EccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699          394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT  432 (458)
Q Consensus       394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~  432 (458)
                      |+|++++|++++.|+.+++|.....    .+..|...|.
T Consensus       300 ~s~~~~~l~~a~sdd~~~~~~~~~~----~~~~~~~~i~  334 (342)
T d1yfqa_         300 IACSDNILCLATSDDTFKTNAAIDQ----TIELNASSIY  334 (342)
T ss_dssp             EEECSSEEEEEEECTHHHHCSSSCT----TSCCCCCEEE
T ss_pred             EEeCCCEEEEEEcCCcEEEeeeeCC----CccCCCCeEE
Confidence            9999999999999988777755332    2334555555

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=232.14  Aligned_cols=279  Identities=20%  Similarity=0.313  Sum_probs=214.5

Q ss_pred             eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699          138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK  217 (458)
Q Consensus       138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  217 (458)
                      +..+.|+||++.|.+ +++++|++||||+.||+|+|||+.++++..  ....|...|.+++|+ +  .+|++++.|+.++
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--~~~~h~~~V~~v~~~-~--~~l~s~s~D~~~~   80 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMR-D--NIIISGSTDRTLK   80 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEE-T--TEEEEEETTSCEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCCEEEEEeC-C--Cccccceeccccc
Confidence            366789999999865 466688999999999999999999887653  344577899999998 3  4899999999999


Q ss_pred             EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699          218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT  297 (458)
Q Consensus       218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~  297 (458)
                      +|+..............  ..+.....  ....+..+..+             +.+.+|+..+++....+....  .  .
T Consensus        81 ~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~d-------------~~i~~~~~~~~~~~~~~~~~~--~--~  139 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHT--STVRCMHL--HEKRVVSGSRD-------------ATLRVWDIETGQCLHVLMGHV--A--A  139 (342)
T ss_dssp             EEETTTTEEEEEECCCS--SCEEEEEE--ETTEEEEEETT-------------SEEEEEESSSCCEEEEEECCS--S--C
T ss_pred             ccccccccceecccccc--eeEeeeec--ccccccccccc-------------eeEEEeecccccceeeeeccc--c--c
Confidence            99998887665554433  33433333  33455555555             499999999988877765322  2  2


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .....+....+++++.|+.|++||.+..+.+..+.+|...+..+.+  ++.++++++.||.|++||++........    
T Consensus       140 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~----  213 (342)
T d2ovrb2         140 VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL----  213 (342)
T ss_dssp             EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred             ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEe----
Confidence            2334456678899999999999999999999999999887766554  6789999999999999999876544322    


Q ss_pred             cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                           ..+...+.++++  ++++|++++.|+.|++|++...+....+.   .|...+.++.+++  +++++|+.||+|+|
T Consensus       214 -----~~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~i  284 (342)
T d2ovrb2         214 -----TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKL  284 (342)
T ss_dssp             -----CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEE
T ss_pred             -----cccccceeEEec--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEEEE
Confidence                 234555666655  45799999999999999998876555444   4667788777764  58999999999999


Q ss_pred             EeCC
Q 012699          455 MSLS  458 (458)
Q Consensus       455 w~l~  458 (458)
                      ||+.
T Consensus       285 wd~~  288 (342)
T d2ovrb2         285 WDLK  288 (342)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9973

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2e-32  Score=246.14  Aligned_cols=288  Identities=8%  Similarity=0.012  Sum_probs=212.4

Q ss_pred             cCCCCeEEEEeCCCCCEEEEEeCCC--cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699          145 GHTSPISCCRFSSSGNNIASASVDG--TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD  222 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~  222 (458)
                      +|...|.+++|+|||++|++++.+.  .|++||+.+++..   ....+...+.+++|+ +++++|++++.++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---KFEENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---EeeCCCceEEeeeec-ccccccceecccccccccccc
Confidence            6889999999999999998876553  7999999887654   345677889999999 788999999999999999999


Q ss_pred             CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699          223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN  302 (458)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  302 (458)
                      +++....+..+.  ..+.+++|+|++++++.+..+.   .........+.+++||+.+++.....   .+...+..++|+
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~spdg~~la~~~~~~---~~~~~~~~~~~~~v~d~~~~~~~~~~---~~~~~~~~~~~s  187 (360)
T d1k32a3         116 TGKPTVIERSRE--AMITDFTISDNSRFIAYGFPLK---HGETDGYVMQAIHVYDMEGRKIFAAT---TENSHDYAPAFD  187 (360)
T ss_dssp             TCCEEEEEECSS--SCCCCEEECTTSCEEEEEEEEC---SSTTCSCCEEEEEEEETTTTEEEECS---CSSSBEEEEEEC
T ss_pred             ccceeeeeeccc--ccccchhhccceeeeeeecccc---ccceeeccccceeeeccccCceeeec---cccccccccccc
Confidence            999887776654  5788999999999998776543   22233445578999999987665533   455678899999


Q ss_pred             cCCCEEEEEecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-----EEEEeccCCCee
Q 012699          303 HNGKILAASAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFGPDETSIFSLGSDGK-----IIEWSLQNQGQV  370 (458)
Q Consensus       303 ~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~  370 (458)
                      |+|++|++++.++.+.+||......       ...+..|...+..+.|+|++..++++..+..     +..+++......
T Consensus       188 pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence            9999999999999999999765432       2333445555666677777766665544321     333333322111


Q ss_pred             EEeecCCcccCCCCCCCceeEEEEcc---CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec
Q 012699          371 LWTRNCSRFCDPESSKSCRHEMALDV---NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                      ..          ..+...+..+.+.+   ++.+++.++.++.+++||+.+.+.    ..|.+.|.+++|+|||++|++++
T Consensus       268 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpDG~~l~~~~  333 (360)
T d1k32a3         268 MI----------IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRK  333 (360)
T ss_dssp             EE----------EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTTSCEEEEEE
T ss_pred             Ee----------eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCCcCEEEECCCCCEEEEEE
Confidence            10          01222333444443   345677788899999999987642    34567799999999999999999


Q ss_pred             CCCcEEEEeCC
Q 012699          448 ADHSVQVMSLS  458 (458)
Q Consensus       448 ~dg~v~iw~l~  458 (458)
                      .||.|++|+++
T Consensus       334 ~Dg~i~v~d~~  344 (360)
T d1k32a3         334 DDGKIYTFPLE  344 (360)
T ss_dssp             TTSCEEEEESS
T ss_pred             CCCeEEEEECC
Confidence            99999999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=2.8e-29  Score=230.60  Aligned_cols=377  Identities=11%  Similarity=0.032  Sum_probs=250.7

Q ss_pred             HHHhhccccCCCcceeeeeeccCCCc--eeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699           13 KEAQLSRLKNNSETIKYANIGQTKNS--TLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS   90 (458)
Q Consensus        13 ~~~~~~~l~~h~~~i~~~~~~s~~~~--~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (458)
                      .++....+-.+...-....+ +.|.+  ++|+.+.|++++|||..+++.+..+..-.     ....++++++++++++++
T Consensus         7 ~~~s~~~~~~~~~~p~~~~~-~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-----~~~~vafSPDGk~l~~~~   80 (426)
T d1hzua2           7 MRESWKVLVKPEDRPKKQLN-DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIG   80 (426)
T ss_dssp             HHHHCEESSCGGGSCSSCCS-CCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-----SEEEEEECTTSCEEEEEE
T ss_pred             hhhhheeeCCcccCCCcccc-cCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEEe
Confidence            33334444444444344455 55544  66889999999999999998776555321     233578889999999999


Q ss_pred             CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEE-EeCCC
Q 012699           91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIAS-ASVDG  169 (458)
Q Consensus        91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg  169 (458)
                      .|+++++|++......                             ....+....+|.+.+.+++|+|||++|++ +..++
T Consensus        81 ~d~~v~vwd~~t~~~~-----------------------------~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~  131 (426)
T d1hzua2          81 RDARIDMIDLWAKEPT-----------------------------KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP  131 (426)
T ss_dssp             TTSEEEEEETTSSSCE-----------------------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESS
T ss_pred             CCCCEEEEEccCCcee-----------------------------EEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCC
Confidence            9999999998763310                             01133444577788888999999998754 45889


Q ss_pred             cEEEEecCCCCCCCccc---------cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          170 TVRIWTYDSSTPASRNA---------TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      ++++||..++.......         ..........+.+++.....+.+....+.+.+++............ .....+.
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~  210 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLA  210 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-ECCSSEE
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe-ccCCccE
Confidence            99999998876542111         1122333455556633334444444455666666555442221111 1125688


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE-E--EEEecCCeE
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI-L--AASAVDGMI  317 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l--~~~~~dg~i  317 (458)
                      .+.++|++++++.+..+.            ..+.+++..+++..................+.+.+.. +  +....|+.+
T Consensus       211 ~~~~~~~g~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  278 (426)
T d1hzua2         211 DGGWDSSHRYFMTAANNS------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  278 (426)
T ss_dssp             EEEECTTSCEEEEEETTC------------SEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE
T ss_pred             eeeECCCCcEEEeeeecc------------cceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE
Confidence            999999999988887665            4899999999998888776554444444544443332 2  233457788


Q ss_pred             EEEeCCC-------CceeeeeeCCCCCeEEEEEcCCCCEEEE-------ecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          318 HMFDMSA-------GLQITGWPAHDSAISSILFGPDETSIFS-------LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       318 ~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      .+|+...       ++....+.+|...+..++|+|++++|++       ++.|++|++||+.+.+...............
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~  358 (426)
T d1hzua2         279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG  358 (426)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred             EEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccC
Confidence            8887643       4677889999999999999999999994       4568899999999876543322211222233


Q ss_pred             CCCCceeEEEEccCCCEEEEE-----eCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeE
Q 012699          384 SSKSCRHEMALDVNGRRLLVT-----SGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMF  443 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~-----~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  443 (458)
                      .+...+.+++|||||++++++     +.++.|.|||..+.+....+.++.      .++|+|++-
T Consensus       359 ~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         359 EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             SSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             CCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            456678899999999988654     246889999999987655555443      335776653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.97  E-value=3.4e-29  Score=229.33  Aligned_cols=364  Identities=10%  Similarity=0.015  Sum_probs=264.2

Q ss_pred             CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699           23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF  102 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~  102 (458)
                      +.......+. ..++-++++.+.|+++.|||..+++....+..-.     ....+.++++++++++++.|+++++|++..
T Consensus        19 ~~~~~~~~~~-~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          19 DRPTQQMNDW-DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             GSCSSCCSCC-CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-----CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             cCCCceeecC-CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            3344444444 5555667999999999999999998876654322     133578889999999999999999999865


Q ss_pred             ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEecCCCCC
Q 012699          103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTP  181 (458)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~  181 (458)
                      .....                             ...+....+|.+.+.+..|+|||++| ++++.+++|++||..+++.
T Consensus        93 ~~~~~-----------------------------~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          93 KEPTT-----------------------------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             SSCCE-----------------------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             CCceE-----------------------------EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc
Confidence            32100                             01333445677778888999999986 6788899999999998875


Q ss_pred             CCccc---------cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699          182 ASRNA---------TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV  252 (458)
Q Consensus       182 ~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  252 (458)
                      .....         ..........+.++|.+..++++...++.|.+||..+.+.......... ..+..+.++|++++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~  222 (432)
T d1qksa2         144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFI  222 (432)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEE
T ss_pred             eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEE
Confidence            43211         2234456778889966666677888899999999988775443322211 4678999999999988


Q ss_pred             EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC---CCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCcee
Q 012699          253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE---DPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQI  328 (458)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~  328 (458)
                      +++.+.            +.+.++|..+++....+....   +........+...+...++.. .++.|.+|+.....  
T Consensus       223 va~~~~------------~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--  288 (432)
T d1qksa2         223 TAANAR------------NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG--  288 (432)
T ss_dssp             EEEGGG------------TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--
T ss_pred             Eecccc------------ceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc--
Confidence            888765            599999999988877765422   334445555555555555443 37889999866443  


Q ss_pred             eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                        ...|...+....++|++..+++++.++..++|+.....               .+......+++ ||++.|++++.|+
T Consensus       289 --~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~---------------~~~~~~~sv~v-pDg~~la~~s~d~  350 (432)
T d1qksa2         289 --HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN---------------PEAEISGSVAV-FDIKAMTGDGSDP  350 (432)
T ss_dssp             --CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC---------------SSHHHHTCEEE-EEGGGCCCSSSCC
T ss_pred             --ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC---------------CCCCeeeEEEE-EechhhcccccCC
Confidence              34577789999999999999999999999999876431               12222344555 9999999999999


Q ss_pred             cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec-----CCCcEEEEeC
Q 012699          409 RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS-----ADHSVQVMSL  457 (458)
Q Consensus       409 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~l  457 (458)
                      .+++|++.+.   ..+..|...|.+++|+|||++++.+.     .||.|+|||-
T Consensus       351 ~~k~w~~~~~---~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         351 EFKTLPIAEW---AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             CEEEECHHHH---HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             ceEecccccc---cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            9999998654   23346778899999999999775442     4789999984

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=3.4e-27  Score=216.54  Aligned_cols=326  Identities=11%  Similarity=0.065  Sum_probs=219.9

Q ss_pred             ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC
Q 012699           81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN  160 (458)
Q Consensus        81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  160 (458)
                      ....++++.+.|+++++||+....                                  .+.++..|. .+..++|+|||+
T Consensus        30 ~~~~~~V~~~~dg~v~vwD~~t~~----------------------------------~~~~l~~g~-~~~~vafSPDGk   74 (426)
T d1hzua2          30 LPNLFSVTLRDAGQIALVDGDSKK----------------------------------IVKVIDTGY-AVHISRMSASGR   74 (426)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCS----------------------------------EEEEEECCS-SEEEEEECTTSC
T ss_pred             CCeEEEEEEcCCCEEEEEECCCCc----------------------------------EEEEEeCCC-CeeEEEECCCCC
Confidence            345567888999999999987644                                  666777764 589999999999


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCcccc---ccCCCceEEEEEecCCCeEE-EEEcCCCcEEEEEcCCCceeeeccCCCC-
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNAT---IYCGTEIMSLEWECKSDRLL-LIGTADGGIKAWNVDAKRVVCDLNTTDA-  235 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~-  235 (458)
                      +|++++.|++|++||+.+++.......   ..+...+.+++|+ ++++++ +++..++.+++||..++.+......+.. 
T Consensus        75 ~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~  153 (426)
T d1hzua2          75 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT  153 (426)
T ss_dssp             EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred             EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC
Confidence            999999999999999998875422111   1122334455566 456655 5566889999999999988766554331 


Q ss_pred             --------CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          236 --------FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       236 --------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                              ......+..++++..++....+.            +.+.+++............ .+...+..++|+|++++
T Consensus       154 ~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKET------------GKVLLVNYKDIDNLTVTSI-GAAPFLADGGWDSSHRY  220 (426)
T ss_dssp             SSSCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEECSSSSSCEEEEE-ECCSSEEEEEECTTSCE
T ss_pred             ccceeecCCCceeEEEECCCCCEEEEecCCC------------CeEEEEEeccccceeeEEe-ccCCccEeeeECCCCcE
Confidence                    12234455566666555544433            5777777766554332221 34456899999999998


Q ss_pred             EEEEec-CCeEEEEeCCCCceeeeeeCCC--CCeEEEEEcCCCC--E-EEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699          308 LAASAV-DGMIHMFDMSAGLQITGWPAHD--SAISSILFGPDET--S-IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD  381 (458)
Q Consensus       308 l~~~~~-dg~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~--~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  381 (458)
                      ++++.. +..+.+++..+++.+.......  .+.....+.+.+.  . .++.+.|+.+.+|+........+.  ......
T Consensus       221 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~  298 (426)
T d1hzua2         221 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA--WKKVAE  298 (426)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTB--TSEEEE
T ss_pred             EEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccccc--ceEeEE
Confidence            877764 5679999999988877665322  2233344433332  2 224455888888887654221110  011112


Q ss_pred             CCCCCCceeEEEEccCCCEEEE-------EeCCccEEEEEccCCCcccccC---------CCCCcEEEEEECCCCCeEE-
Q 012699          382 PESSKSCRHEMALDVNGRRLLV-------TSGSVRAPIYQVRGHASGMRTL---------PHGAAITTVDWHPTLPMFL-  444 (458)
Q Consensus       382 ~~~~~~~v~~~~~s~~g~~l~~-------~~~~~~i~i~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~-  444 (458)
                      ...+...+..++|+||+++|++       +..+++|+|||+.+.+....+.         .|...|.+++|||||++++ 
T Consensus       299 l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         299 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             EECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             EecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEE
Confidence            3356777899999999999996       3456899999999887654432         4566799999999999663 


Q ss_pred             Ee----cCCCcEEEEeC
Q 012699          445 TG----SADHSVQVMSL  457 (458)
Q Consensus       445 s~----~~dg~v~iw~l  457 (458)
                      ++    +.||.|+|||.
T Consensus       379 s~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         379 SVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             EECCCTTSCCEEEEEET
T ss_pred             EEecCCCCCCeEEEEEC
Confidence            32    46889999995

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.8e-26  Score=206.82  Aligned_cols=256  Identities=7%  Similarity=0.024  Sum_probs=180.1

Q ss_pred             eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc---------
Q 012699          141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT---------  211 (458)
Q Consensus       141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------  211 (458)
                      +.+..|...|.+++|+|++++|++++.++.+++|++.+++...  ....+...+.+++|+ +++++|+.+.         
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s-pdg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV--IERSREAMITDFTIS-DNSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEECSSSCCCCEEEC-TTSCEEEEEEEECSSTTCS
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceee--eeecccccccchhhc-cceeeeeeeccccccceee
Confidence            3466899999999999999999999999999999998876543  334456678899999 6777777543         


Q ss_pred             -CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-----
Q 012699          212 -ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-----  285 (458)
Q Consensus       212 -~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-----  285 (458)
                       .++.+++||+.+++........   ..+..+.|+|+++.+++++.+             +.+.+||........     
T Consensus       156 ~~~~~~~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~s~~-------------~~~~~~d~~~~~~~~~~~~~  219 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYR-------------SLDPSPDRVVLNFSFEVVSK  219 (360)
T ss_dssp             CCEEEEEEEETTTTEEEECSCSS---SBEEEEEECTTSCEEEEEESC-------------CCCCEECSSSSCEECCSCBE
T ss_pred             ccccceeeeccccCceeeecccc---cccccccccCCCCEEEEEeCC-------------CceEcccccccceeeccccc
Confidence             3457999999988766544332   568889999999999998877             488888876543221     


Q ss_pred             EeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC---CEEEEecCCC
Q 012699          286 VLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITGWPAHDSAISSILFGPDE---TSIFSLGSDG  357 (458)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg  357 (458)
                      ......+...+..+.|++++..++++..+.     .+..++...+.. ..+..+.+.+..+.+.+.+   .++++++.++
T Consensus       220 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (360)
T d1k32a3         220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKG  298 (360)
T ss_dssp             EEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred             eEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCC
Confidence            111112223344456677766655544321     244444444433 3344556666666665544   4677888899


Q ss_pred             eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699          358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      .+++||+.+.+...             +...+..++|||||++|++++.||.|++||++.++....+..+..
T Consensus       299 ~i~~~d~~~~~~~~-------------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~  357 (360)
T d1k32a3         299 VLLKYDVKTRKVTE-------------VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKR  357 (360)
T ss_dssp             EEEEEETTTCCEEE-------------EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSS
T ss_pred             EEEEEECCCCeEEE-------------ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccc
Confidence            99999998754321             234588999999999999999999999999998866554443433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.1e-23  Score=183.64  Aligned_cols=263  Identities=13%  Similarity=0.132  Sum_probs=202.8

Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEE-EEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          162 IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLL-LIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      .++++.|++|.+||+.+++...   ....+..+..++|+ +++++| +++..++.|++||+.+++.+..+..+.   .+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~---~i~~g~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~---~~~   77 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTA---TIPVGSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQ   77 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEE---EEECSSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEE
T ss_pred             EEEECCCCEEEEEECCCCeEEE---EEECCCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeeccc---ccc
Confidence            3567789999999999887543   34445667899999 566554 677889999999999999988877653   578


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE-EecCCeEEE
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA-SAVDGMIHM  319 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v  319 (458)
                      .+.+++++..++....+.            +.+.+|+..+++....+..   .....+++++|+++.++. +..++.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMAS------------STLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccc------------ceeeecccccceeeeeccc---cccceEEEeecCCCeeeeeeccccceee
Confidence            899999999877766554            5999999999888887753   245789999999988754 555788999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC
Q 012699          320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG  398 (458)
Q Consensus       320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  398 (458)
                      |+..+.+.+..+..+ ..+..++++|+++.+++++.+ +.+.+|+..........          .....+..+++++++
T Consensus       143 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g  211 (301)
T d1l0qa2         143 INTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----------KVEAAPSGIAVNPEG  211 (301)
T ss_dssp             EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSEEEEEEECTTS
T ss_pred             eeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecc----------cccCCcceeeccccc
Confidence            999999888877654 457899999999988777664 56777776654332211          123456789999999


Q ss_pred             CEEEEEeC---CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeE-EEecCCCcEEEEeCC
Q 012699          399 RRLLVTSG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMF-LTGSADHSVQVMSLS  458 (458)
Q Consensus       399 ~~l~~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~l~  458 (458)
                      +.++++..   ++.|++||+.+.+....+ .+...+.+++|+|||++| ++++.|+.|++||++
T Consensus       212 ~~~~v~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         212 TKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cccccccccceeeeeeeeecCCCeEEEEE-cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            98887654   368999999988654443 344568999999999966 678889999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.1e-24  Score=199.09  Aligned_cols=306  Identities=11%  Similarity=0.065  Sum_probs=222.1

Q ss_pred             cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699           82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN  161 (458)
Q Consensus        82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  161 (458)
                      ..-++++.+.++++.+||.....                                  .+..+..|. .+..++|||||++
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~----------------------------------v~~~~~~g~-~~~~v~fSpDG~~   75 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYE----------------------------------IKTVLDTGY-AVHISRLSASGRY   75 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCC----------------------------------EEEEEECSS-CEEEEEECTTSCE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCc----------------------------------EEEEEeCCC-CeeEEEECCCCCE
Confidence            44567899999999999987644                                  566676663 6999999999999


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccccccCCC----ceEEEEEecCCCeE-EEEEcCCCcEEEEEcCCCceeeeccCCC--
Q 012699          162 IASASVDGTVRIWTYDSSTPASRNATIYCGT----EIMSLEWECKSDRL-LLIGTADGGIKAWNVDAKRVVCDLNTTD--  234 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~--  234 (458)
                      +++++.|+++++||+.+++.... .......    .+.+..|+ +++++ ++++..++.+++||..+++.+..+..+.  
T Consensus        76 l~~~s~dg~v~~~d~~t~~~~~~-~~i~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~  153 (432)
T d1qksa2          76 LFVIGRDGKVNMIDLWMKEPTTV-AEIKIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT  153 (432)
T ss_dssp             EEEEETTSEEEEEETTSSSCCEE-EEEECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred             EEEEcCCCCEEEEEeeCCCceEE-EEEecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc
Confidence            99999999999999988765321 1122222    33344455 46665 5778889999999999999887665432  


Q ss_pred             -------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          235 -------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       235 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                             .......+.++|++..++....+.            +.+.+||..+.+......+. ....+..++|+|+|++
T Consensus       154 ~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~------------~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~  220 (432)
T d1qksa2         154 YDEQEYHPEPRVAAILASHYRPEFIVNVKET------------GKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRY  220 (432)
T ss_dssp             TTTCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCE
T ss_pred             ccceeccCCCceeEEEECCCCCEEEEEEccC------------CeEEEEEccCCCcceEEEEc-ccCccccceECCCCCE
Confidence                   123455678888888776555443            69999999987765544332 2345789999999998


Q ss_pred             EEEEec-CCeEEEEeCCCCceeeeee-----CCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEEeecCCccc
Q 012699          308 LAASAV-DGMIHMFDMSAGLQITGWP-----AHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       308 l~~~~~-dg~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      +++++. ++.+.++|..+++.+..+.     .|........+...+...++.. .++.+.+|+.....            
T Consensus       221 ~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~------------  288 (432)
T d1qksa2         221 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG------------  288 (432)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT------------
T ss_pred             EEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc------------
Confidence            877765 4589999999887776654     2344455556655555555443 37889999876431            


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                       ...+...+....++|++..+++++.++..++|......      .|.....++++ ||++.|++++.|+.+++|++
T Consensus       289 -~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~  357 (432)
T d1qksa2         289 -HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPI  357 (432)
T ss_dssp             -CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECH
T ss_pred             -ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-EechhhcccccCCceEeccc
Confidence             12345568889999999999999999999999876542      24344445665 99999999999999999984

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=5.1e-23  Score=179.32  Aligned_cols=270  Identities=14%  Similarity=0.125  Sum_probs=204.0

Q ss_pred             eeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE-EEE
Q 012699           87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI-ASA  165 (458)
Q Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~  165 (458)
                      ++.+.+++|.+||+....                                  .++++... ..+..++|+|||++| +++
T Consensus         6 V~~~~~~~v~v~D~~t~~----------------------------------~~~~i~~g-~~p~~va~spdG~~l~v~~   50 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNK----------------------------------VTATIPVG-SNPMGAVISPDGTKVYVAN   50 (301)
T ss_dssp             EEETTTTEEEEEETTTTE----------------------------------EEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCEEEEEECCCCe----------------------------------EEEEEECC-CCceEEEEeCCCCEEEEEE
Confidence            456778999999976533                                  33333322 457789999999987 566


Q ss_pred             eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699          166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS  245 (458)
Q Consensus       166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~  245 (458)
                      +.++.|++||+.+++...   .......+..+.|++.+...++++..++.+.+|+..+++....+...   .....+.++
T Consensus        51 ~~~~~i~v~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  124 (301)
T d1l0qa2          51 AHSNDVSIIDTATNNVIA---TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLGLALS  124 (301)
T ss_dssp             GGGTEEEEEETTTTEEEE---EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEEC
T ss_pred             CCCCEEEEEECCCCceee---eeeccccccccccccccccccccccccceeeecccccceeeeecccc---ccceEEEee
Confidence            789999999999887653   33344567899999666667777788899999999999888777655   457889999


Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-CeEEEEeCCC
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-GMIHMFDMSA  324 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~v~d~~~  324 (458)
                      |++..++......            +.+.+|+..+.+....+...   ..+..++++|+++.++++..+ +.+.+|+...
T Consensus       125 ~dg~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (301)
T d1l0qa2         125 PDGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (301)
T ss_dssp             TTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cCCCeeeeeeccc------------cceeeeeccccceeeecccC---CCceEEEeeccccceeeecccccccccccccc
Confidence            9999887666543            48999999999888877533   447899999999988887765 6677888777


Q ss_pred             CceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699          325 GLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL  401 (458)
Q Consensus       325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  401 (458)
                      .+....+.. ...+..++|+++++.++.++   .++.|++||+.+.+......          ....+..++|+|||++|
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~----------~~~~~~~va~spdg~~l  258 (301)
T d1l0qa2         190 NSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----------VGPDPAGIAVTPDGKKV  258 (301)
T ss_dssp             TEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----------CCSSEEEEEECTTSSEE
T ss_pred             eeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc----------CCCCEEEEEEeCCCCEE
Confidence            666666554 45578899999999877654   35789999999875443221          23457899999999987


Q ss_pred             E-EEeCCccEEEEEccCCCcccc
Q 012699          402 L-VTSGSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       402 ~-~~~~~~~i~i~~~~~~~~~~~  423 (458)
                      + +++.+++|++||+++++.+..
T Consensus       259 ~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEECCCCeEEEEECCCCeEEEE
Confidence            5 556689999999998865433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=1.3e-23  Score=186.23  Aligned_cols=280  Identities=11%  Similarity=0.077  Sum_probs=201.7

Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEE-EEEcCCCcEEEEEcCCCceeeeccCCCCC--
Q 012699          160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLL-LIGTADGGIKAWNVDAKRVVCDLNTTDAF--  236 (458)
Q Consensus       160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--  236 (458)
                      +++++++.|++|++||+.+.+.+...........+..++|+ ++++++ ++++.++.|.+||+.+++.+..+......  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence            48999999999999999988766443333344567899999 566655 67788999999999999988777654321  


Q ss_pred             -CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699          237 -PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG  315 (458)
Q Consensus       237 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  315 (458)
                       ..+..++++|+++.++.+..+.... ........+.+.+||..+++....+...   ..+..++|+|+|+++++++.  
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~--  154 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLE-LTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGLGR--  154 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEEC-SSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEESS--
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcce-eeeccccccceeeccccCCeEEEecccc---CCceEEEEcCCCCEEEEEcC--
Confidence             2356799999999998877653221 1222334468999999999988887643   34778999999999999864  


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC------------------------CEEEEecCCCeEEEEeccCCCeeE
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDE------------------------TSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                      .+.+||..+++....+..+... ....++|++                        ......+.++.+.+|+..+.....
T Consensus       155 ~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T d1pbyb_         155 DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM  233 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred             CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEE
Confidence            4788999988877766543321 111222222                        122223345568888887664332


Q ss_pred             EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699          372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS  451 (458)
Q Consensus       372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  451 (458)
                      ...        ..+...+..++++|++.+++.+  ++.+++||+.+.+.+... .+...+.+++|+|||++|++++.|+.
T Consensus       234 ~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         234 REV--------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             EEE--------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             EEe--------cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            211        1244567888999999998766  478999999988655443 46678899999999999999999999


Q ss_pred             EEEEeCC
Q 012699          452 VQVMSLS  458 (458)
Q Consensus       452 v~iw~l~  458 (458)
                      |+|||+.
T Consensus       303 i~v~D~~  309 (337)
T d1pbyb_         303 LAAYDAE  309 (337)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999973

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=4.1e-24  Score=190.18  Aligned_cols=289  Identities=10%  Similarity=0.009  Sum_probs=202.4

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeE-EEEEcCCCcEEEEEcCCCceeeecc
Q 012699          153 CRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRL-LLIGTADGGIKAWNVDAKRVVCDLN  231 (458)
Q Consensus       153 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~  231 (458)
                      ++|++++++|++++.|++|.+||+.+++.... ....+...+.+++|+ +++++ ++++..++.|.+||+.+++.+..+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t-~~~~~~~~p~~l~~s-pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS-CVMPDKFGPGTAMMA-PDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE-EECSSCCSSCEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEE-EEcCCCCCcceEEEC-CCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            47899999999999999999999998876532 223445567899999 55555 5667789999999999999887765


Q ss_pred             CCCCC----CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          232 TTDAF----PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       232 ~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      .....    ..+..++++|+++.++++..+... ........++.+.+|+..+++....+.....+..+..+.+++++.+
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR-LNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEE-CSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcc-eeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            54322    235679999999998877654321 1122333456899999988776554433233344666777788776


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEE--------------------------EEecCCCeEEE
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSI--------------------------FSLGSDGKIIE  361 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--------------------------~~~~~dg~i~i  361 (458)
                      ++.   ++.+.+|++.+++.+..+..+.. ...+.++|++..+                          +++..+..+.+
T Consensus       159 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (346)
T d1jmxb_         159 YVA---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS  234 (346)
T ss_dssp             EEE---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred             EEe---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEE
Confidence            654   35689999999888887765432 3444455554433                          22333445666


Q ss_pred             EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      ||+.+........        ..+...+..+.+++++.+++.... +.+.+||..+.+.+... .+...+.+++|+|||+
T Consensus       235 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~-~~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         235 VDLKTGKTHTQEF--------ADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGD  304 (346)
T ss_dssp             EETTTCCEEEEEE--------EECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEE-ECSSCCCEEEECSSSS
T ss_pred             EECCCCceEEEEe--------ecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEE-cCCCCEEEEEEcCCCC
Confidence            7766554332211        124456788899999988877654 56999999888654433 3456799999999999


Q ss_pred             eEEEecCCCcEEEEeCC
Q 012699          442 MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       442 ~l~s~~~dg~v~iw~l~  458 (458)
                      +|++++.|+.|+|||+.
T Consensus       305 ~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             CEEEESBSSEEEEEETT
T ss_pred             EEEEEeCCCcEEEEECc
Confidence            99999999999999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=2.6e-22  Score=177.66  Aligned_cols=273  Identities=8%  Similarity=0.014  Sum_probs=197.8

Q ss_pred             eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec--cCCCCeEEEEeCCCCCE
Q 012699           84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL--GHTSPISCCRFSSSGNN  161 (458)
Q Consensus        84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~  161 (458)
                      +|+++++.|++|.+||+....                                  .++.+.  .+...+.+++|+|||++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~----------------------------------~~~~i~~~~~~~~~~~i~~spDg~~   47 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMA----------------------------------VDKVITIADAGPTPMVPMVAPGGRI   47 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE----------------------------------EEEEEECTTCTTCCCCEEECTTSSE
T ss_pred             eEEEEEcCCCEEEEEECCCCe----------------------------------EEEEEECCCCCCCccEEEECCCCCE
Confidence            689999999999999986633                                  334443  34456789999999998


Q ss_pred             E-EEEeCCCcEEEEecCCCCCCCcccccc---CCCceEEEEEecCCCeEEEEEc------------CCCcEEEEEcCCCc
Q 012699          162 I-ASASVDGTVRIWTYDSSTPASRNATIY---CGTEIMSLEWECKSDRLLLIGT------------ADGGIKAWNVDAKR  225 (458)
Q Consensus       162 l-~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~  225 (458)
                      + ++++.++.|.+||+.+++.........   ....+..++|+ +++++++++.            .+..+.+||..+++
T Consensus        48 l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  126 (337)
T d1pbyb_          48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS  126 (337)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeeccccccceeeccccCCe
Confidence            7 566789999999999987654222111   12235578899 6676676664            46789999999999


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-  304 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-  304 (458)
                      ....+...   ..+..++++|+++.+++++.               .+.+||..+++....+.......   ...++|+ 
T Consensus       127 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~---------------~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~  185 (337)
T d1pbyb_         127 RRKAFEAP---RQITMLAWARDGSKLYGLGR---------------DLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDV  185 (337)
T ss_dssp             EEEEEECC---SSCCCEEECTTSSCEEEESS---------------SEEEEETTTTEEEEEECSTTTTT---TTBCCCBC
T ss_pred             EEEecccc---CCceEEEEcCCCCEEEEEcC---------------CcceeeeecCcEEEEeecCCccc---cceecCCc
Confidence            88877654   45788999999999988764               66789999888777765432211   0111111 


Q ss_pred             -----------------------CCEEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699          305 -----------------------GKILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       305 -----------------------~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                                             ......+..++.+.+||..++.... .+..+...+..+.++|++.+++.+  ++.++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~  263 (337)
T d1pbyb_         186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE  263 (337)
T ss_dssp             CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred             ceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEE
Confidence                                   1112222345579999998877544 345677788999999999988765  58999


Q ss_pred             EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699          361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT  424 (458)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~  424 (458)
                      +||+.+.+......          ....+.+++|+|||++|++++.++.|++||..+.+.+..+
T Consensus       264 v~d~~~~~~~~~~~----------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         264 SFDLEKNASIKRVP----------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEETTTTEEEEEEE----------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEECCCCcEEEEEc----------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            99999876554322          2345789999999999999999999999999988655444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-21  Score=173.38  Aligned_cols=284  Identities=10%  Similarity=0.163  Sum_probs=198.8

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEE-EEEcCCCcEEEEEcCCCceeeeccC-CCCCCc
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLL-LIGTADGGIKAWNVDAKRVVCDLNT-TDAFPS  238 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~  238 (458)
                      .+++++.|++|++|+++............++..+..++|+ +++++| +++..|+.|++|++........+.. ......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            3577889999999999866544444556678889999999 667766 4555689999999987653322221 112245


Q ss_pred             eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeE
Q 012699          239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMI  317 (458)
Q Consensus       239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i  317 (458)
                      +..++++|+++.+++++.+.            +.+.+|+..............+...+.++.++|+++++++++. +..|
T Consensus        85 p~~l~~spDg~~l~v~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i  152 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNA------------GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI  152 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTT------------TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred             ceEEEEcCCCCEEeecccCC------------CceeeeccccccceecccccCCCccceEEEeeecceeeecccccccee
Confidence            77899999999999887654            5899999887776666555556667889999999998887765 4579


Q ss_pred             EEEeCCCCceeee------eeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEe-ecCCcccCCCCCCCce
Q 012699          318 HMFDMSAGLQITG------WPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWT-RNCSRFCDPESSKSCR  389 (458)
Q Consensus       318 ~v~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v  389 (458)
                      .+|+.........      ..........++|++++.+++.. ...+...+|+.......... ................
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence            9999876433221      12344567899999999887655 45677888887654322211 1111122223344567


Q ss_pred             eEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699          390 HEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSL  457 (458)
Q Consensus       390 ~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l  457 (458)
                      ..++++++++++++.. .++.+.+|++..........   .+...+.+++|+|||++|++++ .++.|++|++
T Consensus       233 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             eeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            7899999999877665 46789999987665444333   3446688999999999776654 5689999976

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.8e-21  Score=172.83  Aligned_cols=283  Identities=9%  Similarity=0.027  Sum_probs=198.1

Q ss_pred             eCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeC
Q 012699           78 SRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFS  156 (458)
Q Consensus        78 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~  156 (458)
                      +++.+++|+++++.+++|.+||+....                                  .++++. .|...+.+++|+
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~----------------------------------~~~t~~~~~~~~p~~l~~s   48 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDT----------------------------------VYKSCVMPDKFGPGTAMMA   48 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTE----------------------------------EEEEEECSSCCSSCEEEEC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCC----------------------------------EEEEEEcCCCCCcceEEEC
Confidence            566789999999999999999987633                                  445554 355678899999


Q ss_pred             CCCCEE-EEEeCCCcEEEEecCCCCCCCccccccC----CCceEEEEEecCCCeEEEEEc------------CCCcEEEE
Q 012699          157 SSGNNI-ASASVDGTVRIWTYDSSTPASRNATIYC----GTEIMSLEWECKSDRLLLIGT------------ADGGIKAW  219 (458)
Q Consensus       157 ~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~------------~dg~i~~w  219 (458)
                      |||+++ +++..++.|.+||+.+++..........    ...+..++|+ +++++++++.            .++.+.+|
T Consensus        49 pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~  127 (346)
T d1jmxb_          49 PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVF  127 (346)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcceEEEE
Confidence            999987 5566889999999998765432211111    1235678899 6677676654            47789999


Q ss_pred             EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699          220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL  299 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~  299 (458)
                      +..+++....+........+..+.+++++..++..                +.+.+|++.+++....+.....   ...+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~---~~~~  188 (346)
T d1jmxb_         128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG----------------PDIYKMDVKTGKYTVALPLRNW---NRKG  188 (346)
T ss_dssp             EGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES----------------SSEEEECTTTCCEEEEECSTTC---CCTT
T ss_pred             ecccceeeeEEEeeeccCceEEEEecCCCEEEEeC----------------CcceEEEccCCCEEEEEecCCC---ccce
Confidence            99888766555443333445566677777666543                2788999988888777653322   1222


Q ss_pred             EEccCC--------------------------CEEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCEEEE
Q 012699          300 CFNHNG--------------------------KILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETSIFS  352 (458)
Q Consensus       300 ~~~~~~--------------------------~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~  352 (458)
                      .++|++                          ..++++..++.+.+||+.++.... ....|...+..+.+++++.+++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (346)
T d1jmxb_         189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY  268 (346)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred             EEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEE
Confidence            333332                          233444556678899988876544 34567888999999998888876


Q ss_pred             ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC
Q 012699          353 LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       353 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~  425 (458)
                      .. ++.+.+||..+.+......          ....+.+++|+|||++|++++.++.|++||+.+.+.+..+.
T Consensus       269 ~~-~~~v~v~d~~~~~~~~~~~----------~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQRKLIKAAN----------LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEE----------CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             ec-CCeEEEEECCCCcEEEEEc----------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            65 4589999998875443221          22357899999999999999999999999999886654444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=3.8e-19  Score=159.60  Aligned_cols=334  Identities=7%  Similarity=-0.060  Sum_probs=224.0

Q ss_pred             ccccCCCcceeeeeeccCCCceeeee-----ecCcceEEecccccccc-----ccceeeeeccCCceeeeeCCccceeEe
Q 012699           18 SRLKNNSETIKYANIGQTKNSTLASG-----VNEESLLLSTNSSEACA-----TTATHMGSAEMGQTWASSRPALSRFAT   87 (458)
Q Consensus        18 ~~l~~h~~~i~~~~~~s~~~~~l~s~-----~~d~~~~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (458)
                      .-...|..++..+++ +|||+.++..     +..+.+.+||.++++..     +...++.|+|+++++++..... ....
T Consensus        14 ~a~~~~~~p~~~~a~-spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~-~~~~   91 (373)
T d2madh_          14 LAAGAADGPTNDEAP-GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSF-SRIA   91 (373)
T ss_pred             hhcccCCCCcccccc-CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecC-Cccc
Confidence            344568889999999 9999998754     34467899999888866     3333688888888887765433 3345


Q ss_pred             eccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCC-------CeEEEEeCCCCC
Q 012699           88 NMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTS-------PISCCRFSSSGN  160 (458)
Q Consensus        88 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~  160 (458)
                      .+..++.+.+||......                                  +..+..+..       ....+.|+++++
T Consensus        92 ~~~~~~~v~v~D~~t~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLP----------------------------------IADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             ccccceEEEEEECCCCcE----------------------------------EEEEecCCcceeEeccCCCcEEEEeCCC
Confidence            566788999999865331                                  111111111       123578899998


Q ss_pred             EEEEE--eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC----
Q 012699          161 NIASA--SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD----  234 (458)
Q Consensus       161 ~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----  234 (458)
                      .++..  ..++.+.+|+....+..      .+.....++.++|.....+++.+.|+.+.+|+...++.........    
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSDD------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeEE------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence            76555  34568889988765432      2233456788886666777899999999999999887765543321    


Q ss_pred             CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699          235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD  314 (458)
Q Consensus       235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  314 (458)
                      .......+.+.+++..++... +             +.+.+|+.......................+.|.+...+..+.|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~-~-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  277 (373)
T d2madh_         212 QNLLTQPAQANKSGRIVWPVY-S-------------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS  277 (373)
T ss_pred             ccceeeeEEECCCceEEEecC-C-------------ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecC
Confidence            112233455555555544433 3             48889998877665554444444445556666655555555555


Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      +....                      .+.+++..+++...++.+.+||..+++.....          .+...+..++|
T Consensus       278 ~~~~~----------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~----------~~~~~~~~~a~  325 (373)
T d2madh_         278 SDGIY----------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI----------SLGHDVDAISV  325 (373)
T ss_pred             CCeEE----------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEe----------cCCCCeeEEEE
Confidence            43221                      23345567778888899999999887654432          23456889999


Q ss_pred             ccCCCE--EEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          395 DVNGRR--LLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       395 s~~g~~--l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      +|||+.  +++++.++.|++||+.+++.+..+..+....+.+++.++
T Consensus       326 spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         326 AQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999985  456788999999999999888777778778888877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.2e-19  Score=160.10  Aligned_cols=283  Identities=10%  Similarity=0.166  Sum_probs=192.7

Q ss_pred             eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699           84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIA  163 (458)
Q Consensus        84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  163 (458)
                      ..+++++.+++|++|++.....                               ++.++. ..|.+.+..|+|+|||++|+
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~-------------------------------l~~~~~-~~~~~~v~~la~spDG~~L~   52 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGA-------------------------------LTLTQV-VDVPGQVQPMVVSPDKRYLY   52 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSC-------------------------------EEEEEE-EECSSCCCCEEECTTSSEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCC-------------------------------eEEEEE-EcCCCCEeEEEEeCCCCEEE
Confidence            3457778899999999865220                               012222 35778999999999999985


Q ss_pred             EE-eCCCcEEEEecCCCCCCCcc-ccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          164 SA-SVDGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       164 s~-~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      ++ ..|+.|++|++......... ........+..++|+ +++++|++++ .++.+.+|+..............+...+.
T Consensus        53 v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  131 (333)
T d1ri6a_          53 VGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH  131 (333)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC
T ss_pred             EEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc-CCCCEEeecccCCCceeeeccccccceecccccCCCccce
Confidence            55 45899999999876543222 223344567889999 6677777766 47789999988777665555444446788


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe----ecCCCCCcEEEEEEccCCCEEEEEe-cCC
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL----PLGEDPPAITSLCFNHNGKILAASA-VDG  315 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  315 (458)
                      ++.++|+++.++.+....            ..+.+|+..........    ...........++|++++.+++... ..+
T Consensus       132 ~v~~s~d~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~  199 (333)
T d1ri6a_         132 SANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  199 (333)
T ss_dssp             CCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             EEEeeecceeeecccccc------------ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC
Confidence            899999999988887665            48999998765433211    1122334578899999998877654 456


Q ss_pred             eEEEEeCCCCce----eeeee------CCCCCeEEEEEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699          316 MIHMFDMSAGLQ----ITGWP------AHDSAISSILFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES  384 (458)
Q Consensus       316 ~i~v~d~~~~~~----~~~~~------~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  384 (458)
                      ...+++......    .....      ........+++++++++++. +..++.+.+|++............      ..
T Consensus       200 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  273 (333)
T d1ri6a_         200 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF------QP  273 (333)
T ss_dssp             EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE------EE
T ss_pred             ceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE------eC
Confidence            778887654221    11111      12345677899999987654 456789999999866544322211      11


Q ss_pred             CCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699          385 SKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG  417 (458)
Q Consensus       385 ~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~  417 (458)
                      ....+..++|+|||++|++++. ++.|.+|+++.
T Consensus       274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            2344678999999999888765 58899997754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.86  E-value=8.1e-19  Score=157.42  Aligned_cols=291  Identities=8%  Similarity=-0.017  Sum_probs=197.4

Q ss_pred             ccCCCCeEEEEeCCCCCEEEEE-----eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-------
Q 012699          144 LGHTSPISCCRFSSSGNNIASA-----SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-------  211 (458)
Q Consensus       144 ~~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------  211 (458)
                      ..+.+++.+++++|||+.++..     +.++.|.+||..+++....   .. .+....++|+ +++++|+++.       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~---~~-~~~~~~~a~S-pDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---VN-GGFLPNPVAA-HSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE---Ee-CCCCccEEEc-CCCCEEEEEeecCCccc
Confidence            3688999999999999998764     2345799999888876542   22 2233478999 6777777764       


Q ss_pred             ---CCCcEEEEEcCCCceeeeccCCCCC-----CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          212 ---ADGGIKAWNVDAKRVVCDLNTTDAF-----PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       212 ---~dg~i~~wd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                         .++.|.+||..+++....+..+...     .....+.++++++.++....+.           .+.+.+|+....+.
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-----------~~~~~~~~~~~~~~  160 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-----------GPAVGLVVQGGSSD  160 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC-----------CCceEEeeccCCeE
Confidence               4578999999999988777655421     1234577888888766554332           14788898887666


Q ss_pred             eEEeecCCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCC------CCeEEEEEcCCCCEEEEecCC
Q 012699          284 MTVLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHD------SAISSILFGPDETSIFSLGSD  356 (458)
Q Consensus       284 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d  356 (458)
                      .....      ...++.++|+++.+ ++.+.|+.+.+|+...++.......+.      .....+.+.+++. ++..+.+
T Consensus       161 ~~~~~------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  233 (373)
T d2madh_         161 DQLLS------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYS  233 (373)
T ss_pred             EEEec------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCC
Confidence            55442      35678899998755 677889999999998877665544222      2234556666664 4566778


Q ss_pred             CeEEEEeccCCCeeEEeecCC---cccCCCCCCCceeEEEEccCCCEEEE----------EeCCccEEEEEccCCCcccc
Q 012699          357 GKIIEWSLQNQGQVLWTRNCS---RFCDPESSKSCRHEMALDVNGRRLLV----------TSGSVRAPIYQVRGHASGMR  423 (458)
Q Consensus       357 g~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~----------~~~~~~i~i~~~~~~~~~~~  423 (458)
                      +.+.+|+..............   ..............++++|++..++.          ...++.+.+||..+++... 
T Consensus       234 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~-  312 (373)
T d2madh_         234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-  312 (373)
T ss_pred             ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE-
Confidence            899999988754322111100   00011112233455677777766554          4455678999998886554 


Q ss_pred             cCCCCCcEEEEEECCCCC--eEEEecCCCcEEEEeCC
Q 012699          424 TLPHGAAITTVDWHPTLP--MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       424 ~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~l~  458 (458)
                      ...+...+.+++|+|||+  ++++++.|+.|+|||+.
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            345667899999999998  45788999999999973

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3.6e-18  Score=151.98  Aligned_cols=288  Identities=8%  Similarity=0.002  Sum_probs=186.9

Q ss_pred             CeEEEEeCCCCCEEEEEe-----CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE----------cCC
Q 012699          149 PISCCRFSSSGNNIASAS-----VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG----------TAD  213 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~d  213 (458)
                      |+.-.+.+||++.++...     .+.+|.+||..+++.+...   . .+....++|+ +++++|++.          ..+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~---~-~g~~~~~a~S-pDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---D-GGFLPNPVVA-DDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---E-ECSSCEEEEC-TTSSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE---E-CCCCCceEEc-CCCCEEEEEeCCCccccccCCC
Confidence            344446689999987653     4567999999988765322   1 2233478999 666666553          347


Q ss_pred             CcEEEEEcCCCceeeeccCCCCC-----CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAF-----PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP  288 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~  288 (458)
                      +.|++||..+++....+..+...     .....+.|+|++..++.......           ..+.+|+..+++....+.
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-----------~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA-----------PAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS-----------CEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC-----------ceeeeeecCCCcEeeEEe
Confidence            89999999999988766543221     23456899999998877654321           489999999998888776


Q ss_pred             cCCCC-----CcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEE
Q 012699          289 LGEDP-----PAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEW  362 (458)
Q Consensus       289 ~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  362 (458)
                      .....     .....+.++++++.++... .++.+.+++......     .+...+....+.+++..++.++.++.+++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  221 (355)
T d2bbkh_         147 VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQI  221 (355)
T ss_dssp             CCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred             cCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEE
Confidence            43211     1122345555555544432 233444444333221     233345556778888899999999999999


Q ss_pred             eccCCCeeEEeecC-C--cccCCCCCCCceeEEEEccCCCEEEEEeCC----------ccEEEEEccCCCcccccCCCCC
Q 012699          363 SLQNQGQVLWTRNC-S--RFCDPESSKSCRHEMALDVNGRRLLVTSGS----------VRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       363 d~~~~~~~~~~~~~-~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      ++............ .  ..............++++|++..+++...+          ..|.+||..+.+....+ .+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~-~~~~  300 (355)
T d2bbkh_         222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-EMGH  300 (355)
T ss_dssp             ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-EEEE
T ss_pred             ecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe-cCCC
Confidence            99876433211100 0  000000111233558999999998876543          46999999988654443 3456


Q ss_pred             cEEEEEECCCCC--eEEEecCCCcEEEEeCC
Q 012699          430 AITTVDWHPTLP--MFLTGSADHSVQVMSLS  458 (458)
Q Consensus       430 ~v~~~~~~~~~~--~l~s~~~dg~v~iw~l~  458 (458)
                      .+.+++|+|||+  ++++++.|+.|+|||+.
T Consensus       301 ~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         301 EIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            789999999998  45677889999999973

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5.8e-18  Score=150.63  Aligned_cols=268  Identities=12%  Similarity=0.079  Sum_probs=171.8

Q ss_pred             eeeeccCCCCeEEEEeCCCCCEEEEE----------eCCCcEEEEecCCCCCCCccccc-----cCCCceEEEEEecCCC
Q 012699          140 LETFLGHTSPISCCRFSSSGNNIASA----------SVDGTVRIWTYDSSTPASRNATI-----YCGTEIMSLEWECKSD  204 (458)
Q Consensus       140 ~~~~~~h~~~v~~~~~~~~~~~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~  204 (458)
                      +.++..+..  ..++|+|||++|++.          ..|+.|++||..+++........     ........++|+ +++
T Consensus        41 ~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg  117 (355)
T d2bbkh_          41 IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDG  117 (355)
T ss_dssp             EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTS
T ss_pred             EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe-cCC
Confidence            334444433  368999999988764          34789999999988764322111     112234567899 566


Q ss_pred             eEEEEE--cCCCcEEEEEcCCCceeeeccCCCCC-----CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699          205 RLLLIG--TADGGIKAWNVDAKRVVCDLNTTDAF-----PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN  277 (458)
Q Consensus       205 ~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d  277 (458)
                      +.++.+  +.+..+.+|+..+++....+......     .....+.+++++..++....+.            +.+.+++
T Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~------------~~~~~~~  185 (355)
T d2bbkh_         118 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE------------GTPEITH  185 (355)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSS------------SCCEEEE
T ss_pred             CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCC------------CeEEEEe
Confidence            666555  34678999999999888776554311     1123355666666555443332            3455555


Q ss_pred             CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee--eeeCCC----------CCeEEEEEcC
Q 012699          278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT--GWPAHD----------SAISSILFGP  345 (458)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~----------~~v~~~~~~~  345 (458)
                      ......       .+...+....+.+++..++.++.++.+++|++..++...  ....+.          .....++++|
T Consensus       186 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  258 (355)
T d2bbkh_         186 TEVFHP-------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  258 (355)
T ss_dssp             CCCCSC-------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             cccccc-------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC
Confidence            443222       122334556778888889999999999999998765421  122111          2234588899


Q ss_pred             CCCEEEEecCC----------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE--EEEEeCCccEEEE
Q 012699          346 DETSIFSLGSD----------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR--LLVTSGSVRAPIY  413 (458)
Q Consensus       346 ~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--l~~~~~~~~i~i~  413 (458)
                      ++..++....+          ..|.+||..+.+......          ....+.+++|+|||+.  ++++..++.|++|
T Consensus       259 d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~----------~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~  328 (355)
T d2bbkh_         259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----------MGHEIDSINVSQDEKPLLYALSTGDKTLYIH  328 (355)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----------EEEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec----------CCCCEEEEEEcCCCCeEEEEEECCCCEEEEE
Confidence            99888765443          469999999876543221          2344788999999983  4456678999999


Q ss_pred             EccCCCcccccCCCCCcEEEEEECCC
Q 012699          414 QVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       414 ~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      |+.+++.+..+.++......+.+.++
T Consensus       329 D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         329 DAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             ETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             ECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            99999777666666555555655544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.72  E-value=2.4e-19  Score=158.86  Aligned_cols=281  Identities=8%  Similarity=-0.049  Sum_probs=182.0

Q ss_pred             cCCCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCe--EEEEEcCCC-------
Q 012699          145 GHTSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDR--LLLIGTADG-------  214 (458)
Q Consensus       145 ~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg-------  214 (458)
                      .|.-......++|||++|+.. ..+.+|.++|+.+.+.... ........+..++|+ ++++  +++..+.+.       
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~i-i~iP~g~gphgi~~s-pdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI-THIPNVQAIHGLRLQ-KVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE-EECTTCCCEEEEEEC-CSSBCCEEEEEECSCEESSCSS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeE-EecCCCCCccceEEe-ccCCEEEEEeccCCcccccCcc
Confidence            455556667778999998555 5788999999998875432 234456778999999 4454  444443332       


Q ss_pred             ----------cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699          215 ----------GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM  284 (458)
Q Consensus       215 ----------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~  284 (458)
                                .+..+|..+.+...++...   .....+.++|+++++++.+.+..            .+..++..+.+..
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~---~~p~~v~~spdGk~a~vt~~nse------------~~~~id~~t~~~~  211 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVD---GNLDNTDADYTGKYATSTCYNSE------------RAVDLAGTMRNDR  211 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTT------------CCSSHHHHTCSSB
T ss_pred             cccccccccceEEeecCccceeeEEEecC---CCccceEECCCCCEEEEEecCCC------------ceEEEeccCcceE
Confidence                      2355888888777766655   35788999999999988876542            2222222222222


Q ss_pred             EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE-EecCCCeEEEEe
Q 012699          285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF-SLGSDGKIIEWS  363 (458)
Q Consensus       285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd  363 (458)
                      ..+....   ....+++.|+|+++.++ .++.+.+++....+.+..++.+.. ...+.++|||++++ ++..++++.+||
T Consensus       212 d~i~v~n---~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         212 DWVVVFN---VERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             CEEEEEE---HHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             EEEEeCC---ccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEE
Confidence            1111100   11223467889887664 467778887777777777776555 57899999999875 566799999999


Q ss_pred             ccCCCeeEEeec--CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC------C---ccc-c-----cCC
Q 012699          364 LQNQGQVLWTRN--CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH------A---SGM-R-----TLP  426 (458)
Q Consensus       364 ~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~------~---~~~-~-----~~~  426 (458)
                      +.+..+......  ...+.......-.....+|+++|..+.+..-|.+|..|++...      .   .+. +     ..+
T Consensus       287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G  366 (441)
T d1qnia2         287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG  366 (441)
T ss_dssp             GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred             eehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence            976432110000  0000011122334566799999998888889999999998521      1   111 1     137


Q ss_pred             CCCcEEEEEECCCCCeEEEec
Q 012699          427 HGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       427 h~~~v~~~~~~~~~~~l~s~~  447 (458)
                      |...+.+.+++|||++|++++
T Consensus       367 H~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         367 HNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEETTTTSTTCCCCEEEEEE
T ss_pred             CCccccccccCCCCcEEEecC
Confidence            888888889999999999993

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.65  E-value=1.1e-13  Score=127.60  Aligned_cols=299  Identities=12%  Similarity=-0.021  Sum_probs=170.8

Q ss_pred             eeccCCCCeEEEEeCCCCCEEEEEeC---------CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          142 TFLGHTSPISCCRFSSSGNNIASASV---------DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       142 ~~~~h~~~v~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      .+..|...|.++.|||||++|+.++.         ++.+.+||+.+++...   ...+...+..+.|+ ++++.++.. .
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~---l~~~~~~~~~~~~S-PDG~~ia~~-~  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWS-PVGHKLAYV-W  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEEC-SSTTCEEEE-E
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc---cccCCccccccccc-cCcceeeEe-e
Confidence            45677888999999999999998753         5678999999876542   34456778999999 677777775 4


Q ss_pred             CCcEEEEEcCCCceeeeccCCCC----------------CCceeeeeecCCCCeEEEeecccCCCCcc------------
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDA----------------FPSVLDLKCSPVEPIFVSAAASRRYGSSN------------  264 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------  264 (458)
                      ++.+.+|+..+++..........                ......+.|+|+|+.++....+...-...            
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~  210 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY  210 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCC
Confidence            67899999998876654432211                12345678999999999887654311000            


Q ss_pred             -----------eeeccceeEEEEECCCCceeEEee---------cCCCCCcEEEEEEccCCCEEEEEe-cCC---e--EE
Q 012699          265 -----------IYSWGFASLTVWNMKTWKAMTVLP---------LGEDPPAITSLCFNHNGKILAASA-VDG---M--IH  318 (458)
Q Consensus       265 -----------~~~~~~g~i~i~d~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~-~dg---~--i~  318 (458)
                                 ........+.+|++..+.......         .......+..+.|.++++.++... ..+   .  +.
T Consensus       211 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~  290 (470)
T d2bgra1         211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC  290 (470)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred             CeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEE
Confidence                       001122457777776654332111         011223467888999887665532 221   2  33


Q ss_pred             EEeCCCCceeeee-------------eCCCCCeEEEEEcCC--CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          319 MFDMSAGLQITGW-------------PAHDSAISSILFGPD--ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       319 v~d~~~~~~~~~~-------------~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                      .+|..++......             ..|...  ...+.++  +.+++....||...+|.+...+....        ...
T Consensus       291 ~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~--------~lt  360 (470)
T d2bgra1         291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT--------FIT  360 (470)
T ss_dssp             EEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCE--------ESC
T ss_pred             EecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCcee--------eec
Confidence            4444444432211             111112  2234443  33456677787766665443222111        111


Q ss_pred             CCCCceeEEEEccCCCEEE-EEeCCc----cEEEE--EccCCCcccc----cCCCCCcEEEEEECCCCCeEE---EecCC
Q 012699          384 SSKSCRHEMALDVNGRRLL-VTSGSV----RAPIY--QVRGHASGMR----TLPHGAAITTVDWHPTLPMFL---TGSAD  449 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~-~~~~~~----~i~i~--~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~---s~~~d  449 (458)
                      .....+..+ ++++++.++ +++.++    .-+||  ++.+......    ..+|...+.+++|||||++++   ++...
T Consensus       361 ~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~  439 (470)
T d2bgra1         361 KGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGL  439 (470)
T ss_dssp             CSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSS
T ss_pred             cCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCC
Confidence            233345554 445555543 444332    22445  4444333222    236888899999999999766   23333


Q ss_pred             CcEEEEe
Q 012699          450 HSVQVMS  456 (458)
Q Consensus       450 g~v~iw~  456 (458)
                      -.+.+|+
T Consensus       440 P~~~l~~  446 (470)
T d2bgra1         440 PLYTLHS  446 (470)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            3456654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=6.3e-15  Score=131.36  Aligned_cols=298  Identities=7%  Similarity=-0.047  Sum_probs=179.3

Q ss_pred             CCcceeeeeeccCCCce---eeeeecCcc--eEEecccccccc-----ccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699           23 NSETIKYANIGQTKNST---LASGVNEES--LLLSTNSSEACA-----TTATHMGSAEMGQTWASSRPALSRFATNMSGN   92 (458)
Q Consensus        23 h~~~i~~~~~~s~~~~~---l~s~~~d~~--~~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   92 (458)
                      +......++. .++++.   .++...+++  +.+||..+++..     +......++++++.+++..... ..++.++.+
T Consensus        18 ~~g~~~~~a~-~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~-~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGP-GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSF-ARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCC-CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEE-TTTTSSSEE
T ss_pred             cCCCcccccc-CCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccC-ccccccccC
Confidence            3444555666 777774   333455555  556688887765     3334678888888777754322 224556778


Q ss_pred             CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe-CCCcE
Q 012699           93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS-VDGTV  171 (458)
Q Consensus        93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v  171 (458)
                      +.+.+||......  ...+..       |.+...                  ........++|+|||++|+.+. .++.+
T Consensus        96 ~~v~v~D~~t~~~--~~~i~~-------p~~~~~------------------~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          96 DYVEVFDPVTFLP--IADIEL-------PDAPRF------------------SVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEEEECTTTCCE--EEEEEE-------TTSCSC------------------CBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             CeEEEEECCCCcE--eeeecC-------Ccccee------------------cccCCccceEECCCCCEEEEEeCCCCeE
Confidence            8999999765321  000000       010000                  0011223589999999998775 57999


Q ss_pred             EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC----CCCCceeeeeecCC
Q 012699          172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT----DAFPSVLDLKCSPV  247 (458)
Q Consensus       172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~v~~~~~~~~  247 (458)
                      .+||+.+++.......   ....   .+.|.....++..+.||.+.+++.............    .....+....+.++
T Consensus       149 ~~~d~~~~~~~~~~~~---~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         149 AGLSVPGASDDQLTKS---ASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             EEEEETTTEEEEEEEC---SSCC---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             EEEECCCCcEeEEeec---cCcc---eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence            9999988765432211   1111   112234556777888999999987765433222111    11123445667777


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC----------CCcEEEEEEccCCCEEEEEecC---
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED----------PPAITSLCFNHNGKILAASAVD---  314 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d---  314 (458)
                      +..+....               +.+.+++...............          +.....++++|++..+++...+   
T Consensus       223 g~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~  287 (368)
T d1mdah_         223 GMLVWAVA---------------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR  287 (368)
T ss_dssp             TEEEECBS---------------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSS
T ss_pred             cEEEEecC---------------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCc
Confidence            66665543               2555555554443322211111          1122457889998887765433   


Q ss_pred             ------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE--EEEecCCCeEEEEeccCCCeeE
Q 012699          315 ------GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS--IFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       315 ------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                            ..|.+||..+++.+..+.. ...+.+++|+|||+.  ++++..|+.|++||..+++...
T Consensus       288 ~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         288 SCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             CTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             eeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence                  3599999999998887763 457889999999973  4577789999999999876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=5.6e-15  Score=131.73  Aligned_cols=287  Identities=7%  Similarity=-0.026  Sum_probs=181.0

Q ss_pred             CCCCeEEEEeCCCCCEEE---EEeCCCc--EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc---------
Q 012699          146 HTSPISCCRFSSSGNNIA---SASVDGT--VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT---------  211 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~---s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------  211 (458)
                      +.++...++..++++...   +...+++  +.+||..+++....  ...+.  ...++|+ ++++.+++.+         
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~--~~~~~--~~~~a~s-pDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH--SLGAF--LSLAVAG-HSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE--EEECT--TCEEEEC-TTSSCEEEEEEEETTTTSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE--EeCCC--CCcceEC-CCCCEEEEEcccCcccccc
Confidence            455555666778887532   2344555  55667777665432  11122  2357898 6677666643         


Q ss_pred             -CCCcEEEEEcCCCceeeeccCCCCC-----CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699          212 -ADGGIKAWNVDAKRVVCDLNTTDAF-----PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT  285 (458)
Q Consensus       212 -~dg~i~~wd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~  285 (458)
                       .|+.|.+||..+++....+..+...     .....++|+|+|++++.+..+.            +.+.+||+.+++...
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~------------~~v~~~d~~~~~~~~  160 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS------------SAAAGLSVPGASDDQ  160 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS------------SCEEEEEETTTEEEE
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC------------CeEEEEECCCCcEeE
Confidence             4678999999999988776543221     2245689999999998876543            599999999999988


Q ss_pred             EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee------eeCCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699          286 VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG------WPAHDSAISSILFGPDETSIFSLGSDGKI  359 (458)
Q Consensus       286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  359 (458)
                      .+...... .+    +......++..+.||.+.++++........      +..+...+....+.+++..+.+.  .+.+
T Consensus       161 ~~~~~~~~-~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v  233 (368)
T d1mdah_         161 LTKSASCF-HI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSI  233 (368)
T ss_dssp             EEECSSCC-CC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCC
T ss_pred             EeeccCcc-eE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCE
Confidence            87654322 11    112234566667788888888765433221      22344455677888887666543  4567


Q ss_pred             EEEeccCCCeeEEeecCCcc---cCCCCCCCceeEEEEccCCCEEEEEeCC---------ccEEEEEccCCCcccccCCC
Q 012699          360 IEWSLQNQGQVLWTRNCSRF---CDPESSKSCRHEMALDVNGRRLLVTSGS---------VRAPIYQVRGHASGMRTLPH  427 (458)
Q Consensus       360 ~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------~~i~i~~~~~~~~~~~~~~h  427 (458)
                      .++++...............   ............++++|++..+++...+         ..+.+||..+++.... ..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~-~~~  312 (368)
T d1mdah_         234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-ISN  312 (368)
T ss_dssp             EEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-CEE
T ss_pred             EEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE-ecC
Confidence            77777654333221110000   0000011223458899999888776432         3689999998865443 345


Q ss_pred             CCcEEEEEECCCCC--eEEEecCCCcEEEEeC
Q 012699          428 GAAITTVDWHPTLP--MFLTGSADHSVQVMSL  457 (458)
Q Consensus       428 ~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~l  457 (458)
                      ...+.+++|+|||+  +++++..|+.|++||.
T Consensus       313 ~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            56899999999997  3567788999999996

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.56  E-value=1.6e-14  Score=127.68  Aligned_cols=279  Identities=9%  Similarity=-0.005  Sum_probs=173.8

Q ss_pred             EEEEeCCCcEEEEecCCCCCCCccccc----------------------------cCCCceEEEEEecCCCeEEEE-EcC
Q 012699          162 IASASVDGTVRIWTYDSSTPASRNATI----------------------------YCGTEIMSLEWECKSDRLLLI-GTA  212 (458)
Q Consensus       162 l~s~~~dg~v~iwd~~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~~l~~-~~~  212 (458)
                      ++|++.+|.|++|++.+++.+.....+                            .|........++ +++++|++ ...
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gt-pDGr~lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGR-YDGKYLFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTE-EEEEEEEEEETT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceeccc-CCCCEEEEEcCC
Confidence            567778899999988776543221110                            011122333345 45666654 557


Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe--EEEeecccC----CCCcceeeccceeEEEEECCCCceeEE
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI--FVSAAASRR----YGSSNIYSWGFASLTVWNMKTWKAMTV  286 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~g~i~i~d~~~~~~~~~  286 (458)
                      +..|.++|+++++....+..... ..+..++++|+++.  ++..+.+..    .+...........+..+|..+.+....
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g-~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNV-QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTC-CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCC-CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            88999999999998776654322 56889999999984  333333210    000111111224667789999888887


Q ss_pred             eecCCCCCcEEEEEEccCCCEEEEEecCC-eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699          287 LPLGEDPPAITSLCFNHNGKILAASAVDG-MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ  365 (458)
Q Consensus       287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  365 (458)
                      +....   ....++++|+|+++++.+.+. .+..++..+.+....+.... .-..++++|+|+++..+ .++.+.+++..
T Consensus       172 I~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~~~dGk~~~v~-~~~v~vvd~~~  246 (441)
T d1qnia2         172 VIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAAVKAGNFKTIG-DSKVPVVDGRG  246 (441)
T ss_dssp             EEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHHHHTTCCBCCT-TCCCCEEECSS
T ss_pred             EecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC-ccceEEEecCCCEEEeC-CCCcEEEEccc
Confidence            76554   357799999999999887653 34444444443333222111 11234567899877654 46677777766


Q ss_pred             CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE-eCCccEEEEEccCCCcc--------cccCC---CCCcEEE
Q 012699          366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT-SGSVRAPIYQVRGHASG--------MRTLP---HGAAITT  433 (458)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~~i~i~~~~~~~~~--------~~~~~---h~~~v~~  433 (458)
                      ..+.....          .....+..+.++|||++++++ ..++++.+||+......        ..+.+   ..-....
T Consensus       247 ~~~v~~~I----------PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh  316 (441)
T d1qnia2         247 ESEFTRYI----------PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH  316 (441)
T ss_dssp             SCSSEEEE----------CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred             CCceEEEE----------eCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence            54333222          122336779999999998765 55899999998653211        00111   1123566


Q ss_pred             EEECCCCCeEEEecCCCcEEEEeC
Q 012699          434 VDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       434 ~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                      .+|+++|..+.+...|..|..|++
T Consensus       317 ~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         317 TTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             EEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ceecCCceEEEcccccceEEEecc
Confidence            799999999999999999999986

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=2.5e-12  Score=118.26  Aligned_cols=120  Identities=13%  Similarity=0.019  Sum_probs=79.5

Q ss_pred             cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699           19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS   98 (458)
Q Consensus        19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~   98 (458)
                      +|..|...|.+++| ||||++|+.+++  ..++|.....                                   +.+.+|
T Consensus        56 ~~~~~~~~i~~~~~-SpDg~~i~~~~~--~~~~~r~s~~-----------------------------------~~~~l~   97 (470)
T d2bgra1          56 TFDEFGHSINDYSI-SPDGQFILLEYN--YVKQWRHSYT-----------------------------------ASYDIY   97 (470)
T ss_dssp             TTTTSSSCCCEEEE-CTTSSEEEEEEE--EEECSSSCEE-----------------------------------EEEEEE
T ss_pred             hhhhccCccceeEE-CCCCCEEEEEEC--CcceeeeccC-----------------------------------ceEEEE
Confidence            66778888999999 999999998873  3344443222                                   234445


Q ss_pred             ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699           99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS  178 (458)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~  178 (458)
                      ++...                                   .+..+..|.+.+..+.|||||++||... ++.+.+|+..+
T Consensus        98 d~~~~-----------------------------------~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~  141 (470)
T d2bgra1          98 DLNKR-----------------------------------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN  141 (470)
T ss_dssp             ETTTT-----------------------------------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             ECCCC-----------------------------------cccccccCCccccccccccCcceeeEee-cccceEEECCC
Confidence            54331                                   2234557788899999999999999864 67899999887


Q ss_pred             CCCCCcccccc----------------CCCceEEEEEecCCCeEEEEEcCC
Q 012699          179 STPASRNATIY----------------CGTEIMSLEWECKSDRLLLIGTAD  213 (458)
Q Consensus       179 ~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~l~~~~~d  213 (458)
                      +..........                .......+.|+ |+++.|+....|
T Consensus       142 g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS-PDGk~ia~~~~d  191 (470)
T d2bgra1         142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFN  191 (470)
T ss_dssp             SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEE
T ss_pred             CceeeeeeccCCCcccccccceeeeeeecCCccccEEC-CCCCccceeEec
Confidence            76542211100                11234567799 677778776554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.50  E-value=1.8e-11  Score=108.00  Aligned_cols=265  Identities=9%  Similarity=0.053  Sum_probs=149.4

Q ss_pred             CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCccee--e
Q 012699          190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIY--S  267 (458)
Q Consensus       190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  267 (458)
                      ....+..|+|+ +++++|+++.. +.+..|.+....................+.++++++.++....+...+.....  .
T Consensus        38 ~~~~~s~la~s-~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFD-HERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEEC-TTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEc-CCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            34456679999 66777776654 56777877643322222111111346678889999854433222110000000  0


Q ss_pred             ccceeEEEEECCCC-ce---eEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCC-Ccee--eee--eCCCCC
Q 012699          268 WGFASLTVWNMKTW-KA---MTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSA-GLQI--TGW--PAHDSA  337 (458)
Q Consensus       268 ~~~g~i~i~d~~~~-~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~-~~~~--~~~--~~~~~~  337 (458)
                      ...+...++.+... +.   ...... .....+.++.|+|+|++++++.. ...|.+|+... +...  ...  ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             CCCCcceeEeeeecceecCcccCccc-CCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence            11123333333221 11   111111 12234789999999999888764 35788887654 2221  111  123457


Q ss_pred             eEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEEe--ecCCcc--------cCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          338 ISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLWT--RNCSRF--------CDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       338 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~--~~~~~~--------~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      .+.++|+|+++++++.. .+++|.+|++.........  ......        ............+.++|||++|+++..
T Consensus       195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            89999999999876554 5889999999765432111  110000        011122334567899999999998753


Q ss_pred             C------ccEEEEEccCCCccccc------CCCCCcEEEEEECC-CCCeEEEe-cCCCcEEEEeC
Q 012699          407 S------VRAPIYQVRGHASGMRT------LPHGAAITTVDWHP-TLPMFLTG-SADHSVQVMSL  457 (458)
Q Consensus       407 ~------~~i~i~~~~~~~~~~~~------~~h~~~v~~~~~~~-~~~~l~s~-~~dg~v~iw~l  457 (458)
                      .      ..|..|++.....+...      ........+++++| +|++|+++ ..++.|.+|++
T Consensus       275 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             cCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            2      23777777654322211      12334677899998 78866655 57799999986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.49  E-value=2.9e-11  Score=106.57  Aligned_cols=255  Identities=13%  Similarity=0.114  Sum_probs=151.1

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEE-E-EEc-CCCcEEEEEcC
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLL-L-IGT-ADGGIKAWNVD  222 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~-~~~-~dg~i~~wd~~  222 (458)
                      ....+..|+|+|++++|+++.. +.+..|.+....................+.++ ++++.+ + ++. ..+.+..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~-~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEEC-CCCCEEEEEEecCCCCEEEEeEcc
Confidence            4556778999999999988764 56788877643322111112223334556666 445432 2 222 23455544432


Q ss_pred             CC-------------ce---eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-ee-
Q 012699          223 AK-------------RV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AM-  284 (458)
Q Consensus       223 ~~-------------~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~-  284 (458)
                      ..             +.   ..... ......+.++.|+|++++++++....            ..|.+|+..... .. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~q~~~h~h~v~~sPdG~~l~v~d~g~------------d~v~~~~~~~~g~~~~  182 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADLTA------------NKLWTHRKLASGEVEL  182 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTSCEEE
T ss_pred             CCCCcceeEeeeecceecCcccCcc-cCCCCcceEEEECCCCCEEEEeeCCC------------CEEEEEEccCCCceee
Confidence            11             10   00001 11123478999999999888876543            388888765432 22 


Q ss_pred             -EEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceee--e---ee--------------CCCCCeEEEEE
Q 012699          285 -TVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQIT--G---WP--------------AHDSAISSILF  343 (458)
Q Consensus       285 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~--~---~~--------------~~~~~v~~~~~  343 (458)
                       ..............++|+|+++++++.. .++.|.+|++...+...  .   ..              .+......+.+
T Consensus       183 ~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  262 (365)
T d1jofa_         183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL  262 (365)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred             ccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEE
Confidence             2222222335689999999999886655 47899999987654321  1   11              11123567899


Q ss_pred             cCCCCEEEEecC------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEe-CCccEEEEEc
Q 012699          344 GPDETSIFSLGS------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTS-GSVRAPIYQV  415 (458)
Q Consensus       344 ~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~-~~~~i~i~~~  415 (458)
                      +|+|++|+++..      .+.|..|++...........   .............++++| +|++|+++. .++.|.+|++
T Consensus       263 spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~---~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF---LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE---EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE---eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            999999887643      23488888776544332211   111122344567799998 899888876 4689999988


Q ss_pred             cCC
Q 012699          416 RGH  418 (458)
Q Consensus       416 ~~~  418 (458)
                      +..
T Consensus       340 ~~~  342 (365)
T d1jofa_         340 KDE  342 (365)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.41  E-value=2.4e-10  Score=95.56  Aligned_cols=238  Identities=7%  Similarity=0.045  Sum_probs=154.4

Q ss_pred             CCceEEEEEecCCCeEEEEE-cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699          191 GTEIMSLEWECKSDRLLLIG-TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG  269 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (458)
                      ......++++ ++++++++. ...+.+..++...........  ........+++.+++.++++....            
T Consensus        13 ~~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~gvav~~~g~i~v~d~~~------------   77 (260)
T d1rwia_          13 RLSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPF--NGLYQPQGLAVDGAGTVYVTDFNN------------   77 (260)
T ss_dssp             CCCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCC--CSCCSCCCEEECTTCCEEEEETTT------------
T ss_pred             cCCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEecc--CCccCceEEEEcCCCCEEEeeeee------------
Confidence            3456889999 666665554 455777777665443332221  112356788999999877765544            


Q ss_pred             ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699          270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (458)
                       +.+++++..+......  . ........++++++++++++-..+..+..++...................++++|+++.
T Consensus        78 -~~i~~~~~~~~~~~~~--~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~  153 (260)
T d1rwia_          78 -RVVTLAAGSNNQTVLP--F-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV  153 (260)
T ss_dssp             -EEEEECTTCSCCEECC--C-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCE
T ss_pred             -ceeeeeeeccceeeee--e-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCE
Confidence             3666665554433322  2 22345789999999998887767777888887654332222222345578999999998


Q ss_pred             EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699          350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA  429 (458)
Q Consensus       350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~  429 (458)
                      +++...++.|..++..........         ......+..++++++|+++++-...++|..++..+..........-.
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~  224 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQVVLP---------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN  224 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECC---------CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCC
T ss_pred             eeeccccccccccccccceeeeee---------ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCC
Confidence            888888899999998754332211         12234568899999999888777788888888765532222223335


Q ss_pred             cEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          430 AITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      .+..|+++++|.++++-..++.|+..+
T Consensus       225 ~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         225 TPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            688999999999888766677776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=1.7e-09  Score=90.19  Aligned_cols=238  Identities=11%  Similarity=0.077  Sum_probs=152.4

Q ss_pred             CeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699          149 PISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV  227 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  227 (458)
                      .-..+++.++|+..++. +..+.+..++.......  ............++++ +++.++++....+.+++++-.+....
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCCCSCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--EeccCCccCceEEEEc-CCCCEEEeeeeeceeeeeeeccceee
Confidence            34789999999976654 45567777765543321  1112222345778888 67777777777777776665555444


Q ss_pred             eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699          228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI  307 (458)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  307 (458)
                      .....   ......+++.++++++++....             ..+..++...... ..+... .......++++|++++
T Consensus        92 ~~~~~---~~~p~~iavd~~g~i~v~d~~~-------------~~~~~~~~~~~~~-~~~~~~-~~~~p~~i~~~~~g~~  153 (260)
T d1rwia_          92 LPFDG---LNYPEGLAVDTQGAVYVADRGN-------------NRVVKLAAGSKTQ-TVLPFT-GLNDPDGVAVDNSGNV  153 (260)
T ss_dssp             CCCCS---CCSEEEEEECTTCCEEEEEGGG-------------TEEEEECTTCSSC-EECCCC-SCCSCCEEEECTTCCE
T ss_pred             eeeee---eeecccccccccceeEeecccc-------------cccccccccccee-eeeeec-ccCCcceeeecCCCCE
Confidence            33222   2467899999999877765443             3677776655332 222212 2234578999999998


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699          308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS  387 (458)
Q Consensus       308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  387 (458)
                      +++...++.|..+|.............-.....|++.++|+++++....+.|..++.........         ....-.
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~---------~~~~~~  224 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL---------PFTGLN  224 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC---------CCCSCC
T ss_pred             eeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE---------ccCCCC
Confidence            88888888999999875543333234445678999999999888888888888887654322111         111223


Q ss_pred             ceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699          388 CRHEMALDVNGRRLLVTSGSVRAPIYQVR  416 (458)
Q Consensus       388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~  416 (458)
                      .+..++++++|+++++-..+++|+.++..
T Consensus       225 ~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         225 TPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            56889999999877766666766655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=9.3e-09  Score=86.66  Aligned_cols=243  Identities=9%  Similarity=0.071  Sum_probs=161.5

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccccc----CCCceEEEEEecCCCeEEEEE-cCCCcEEEEEcCC
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIY----CGTEIMSLEWECKSDRLLLIG-TADGGIKAWNVDA  223 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~  223 (458)
                      ....++++|+++.+++-..+..|++||.+. +.+.......    .......+++.+..+..+++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            457899999999888877788999999653 2221111111    112345566664445555543 345677777754 


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH  303 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  303 (458)
                      ++....+... .......+++.+++..+++....             +.+.+++.. ++.+..+....+......+++.+
T Consensus       102 g~~~~~~~~~-~~~~p~~~avd~~G~i~v~~~~~-------------~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~  166 (279)
T d1q7fa_         102 GQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKV-------------MRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND  166 (279)
T ss_dssp             SCEEEEECTT-TCSCEEEEEECTTSCEEEEETTT-------------TEEEEECTT-SCEEEEEECTTTCSSEEEEEECS
T ss_pred             ccceeecCCC-cccccceeccccCCcEEEEeecc-------------ceeeEeccC-Cceeecccccccccccceeeecc
Confidence            5554444332 22457789999999877776554             378888764 45566665555667788999999


Q ss_pred             CCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCccc
Q 012699          304 NGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFC  380 (458)
Q Consensus       304 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~  380 (458)
                      +++.+++....+.|++||.. ++.+.++.  +.......|++.|+|+.+++-.. ++.|.+|+.. ++ ......     
T Consensus       167 ~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~-~~~~~~-----  238 (279)
T d1q7fa_         167 KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQ-LISALE-----  238 (279)
T ss_dssp             SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SC-EEEEEE-----
T ss_pred             ceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CC-EEEEEe-----
Confidence            99888888888999999965 66666653  34456789999999997776544 4579999854 32 221111     


Q ss_pred             CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                       ..........+++.|+|++ +++..+++|++|.....
T Consensus       239 -~~~~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         239 -SKVKHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             -ESSCCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred             -CCCCCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeee
Confidence             0112235788999999975 55667899999998765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.30  E-value=5.4e-09  Score=89.56  Aligned_cols=246  Identities=12%  Similarity=0.119  Sum_probs=155.4

Q ss_pred             eEEEEEecCCCeEEEEEcC-------CCcEEEEEcCCCceeeeccCCC--CCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699          194 IMSLEWECKSDRLLLIGTA-------DGGIKAWNVDAKRVVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGSSN  264 (458)
Q Consensus       194 v~~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  264 (458)
                      ...++|. ++++++++...       +|.|..||..++..........  .......+.+.+++..++++....      
T Consensus        20 ~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~------   92 (314)
T d1pjxa_          20 AEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL------   92 (314)
T ss_dssp             CEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT------
T ss_pred             CeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCC------
Confidence            4667888 56776665433       4678899988876543322111  112356799999998777765542      


Q ss_pred             eeeccceeEEEEECCCCceeEEee-cCCC-CCcEEEEEEccCCCEEEEEec---------------CCeEEEEeCCCCce
Q 012699          265 IYSWGFASLTVWNMKTWKAMTVLP-LGED-PPAITSLCFNHNGKILAASAV---------------DGMIHMFDMSAGLQ  327 (458)
Q Consensus       265 ~~~~~~g~i~i~d~~~~~~~~~~~-~~~~-~~~i~~~~~~~~~~~l~~~~~---------------dg~i~v~d~~~~~~  327 (458)
                             .+..++........... ..+. ....+.+++.++|++.++-..               .|.|+.++.. ++.
T Consensus        93 -------~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~  164 (314)
T d1pjxa_          93 -------GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             -------EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             -------eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cce
Confidence                   67888876543222111 1111 113577999999987776422               2455555543 333


Q ss_pred             eeeeeCCCCCeEEEEEcCCCC-----EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699          328 ITGWPAHDSAISSILFGPDET-----SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       328 ~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                      ... ...-...+.++|+|+++     ++++-+..+.|..||+..............+  ..........+++.++|++.+
T Consensus       165 ~~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~--~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         165 IQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCCEEE
T ss_pred             eEe-eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc--cccccccceeeEEecCCcEEE
Confidence            322 22233457899999764     4455567889999998765544322111111  111223467899999999888


Q ss_pred             EEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeC
Q 012699          403 VTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSL  457 (458)
Q Consensus       403 ~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l  457 (458)
                      +....+.|.+|+.++......+......+++++|.|+++ ++++.+.+|.|...++
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            888889999999887755544444556789999999997 5667777888887765

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.2e-09  Score=89.19  Aligned_cols=239  Identities=15%  Similarity=0.099  Sum_probs=145.0

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-C--cEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-G--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP  246 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  246 (458)
                      .|.|.|.+.....   ........+...+|+ |+++.|+..... +  .+.+.+...+.........   .......|+|
T Consensus        20 ~l~i~d~dG~~~~---~l~~~~~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sp   92 (269)
T d2hqsa1          20 ELRVSDYDGYNQF---VVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFSP   92 (269)
T ss_dssp             EEEEEETTSCSCE---EEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS---SCEEEEEECT
T ss_pred             EEEEEcCCCCCcE---EEecCCCceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCceeEEeeee---cccccceecC
Confidence            4666676655433   233455677889999 667777655433 2  4666677766654433332   4677889999


Q ss_pred             CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCC--eEEEEeCC
Q 012699          247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDG--MIHMFDMS  323 (458)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~v~d~~  323 (458)
                      ++..++........          ..+..+...........   ..........+++++..++..+ .+|  .|.+.++.
T Consensus        93 dg~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~  159 (269)
T d2hqsa1          93 DGSKLAFALSKTGS----------LNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  159 (269)
T ss_dssp             TSSEEEEEECTTSS----------CEEEEEETTTCCEEECC---CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCeeeEeeecCCc----------cceeecccccccceeee---eccccccccccccccccceecccccCCceEeeeecc
Confidence            99988876654310          13333333333332222   2333455667777776555443 444  56666666


Q ss_pred             CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699          324 AGLQITGWPAHDSAISSILFGPDETSIFSLGSD-GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       324 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                      .+.. ..+..+........|+|+++.++..+.+ +...+|...........         ...........|||||+.|+
T Consensus       160 ~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         160 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV---------LSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE---------CCCSSSCEEEEECTTSSEEE
T ss_pred             cccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceE---------eecCccccceEECCCCCEEE
Confidence            5543 3344556677888999999988876654 34444444332221111         11233456778999999998


Q ss_pred             EEeC---CccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699          403 VTSG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT  439 (458)
Q Consensus       403 ~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  439 (458)
                      ..+.   ...++++++.+.. ..++....+.+...+|||-
T Consensus       230 f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         230 YSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCC
T ss_pred             EEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCCC
Confidence            7664   3578999998774 4556666778899999983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.27  E-value=9.6e-09  Score=88.31  Aligned_cols=240  Identities=13%  Similarity=0.147  Sum_probs=153.0

Q ss_pred             ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699          193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS  272 (458)
Q Consensus       193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  272 (458)
                      .+..++|. ++++++++-..++.|..|+.+++.....+....  .....+++.+++.++++...+..         ..+.
T Consensus        41 ~lEG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~~~~---------~~~~  108 (319)
T d2dg1a1          41 QLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGDFK---------STGG  108 (319)
T ss_dssp             CEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTTSS---------SCCE
T ss_pred             CcEeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecCCCc---------ccee
Confidence            34678898 667777777788999999988876554443322  45788999999998876543211         0135


Q ss_pred             EEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec------CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC
Q 012699          273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV------DGMIHMFDMSAGLQITGWPAHDSAISSILFGPD  346 (458)
Q Consensus       273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  346 (458)
                      +...+...................+.+++.++|++.++...      .+.+..++...+ .+..+...-...+.++|+|+
T Consensus       109 i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~d  187 (319)
T d2dg1a1         109 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTD  187 (319)
T ss_dssp             EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTT
T ss_pred             EEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccc
Confidence            66666666555444432223345788999999986665322      234666665433 33333223345678999999


Q ss_pred             CCEEE-EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC
Q 012699          347 ETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       347 ~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~  425 (458)
                      ++.|+ +-+..+.|..|++............ ..............++++++|++.++....+.|.+++..+. .+..+.
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~-~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~-~l~~i~  265 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGA-TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-PIGQIL  265 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-EEEEEE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccc-eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc-EEEEEe
Confidence            98664 4466889999998754332221110 00001112233677999999998888888999999997543 332222


Q ss_pred             ------CCCCcEEEEEECCCCCeEEEec
Q 012699          426 ------PHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       426 ------~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                            ++...+++++|.|++..+++..
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence                  3455788999999887666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=3.5e-08  Score=82.61  Aligned_cols=217  Identities=13%  Similarity=0.146  Sum_probs=131.6

Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .|.+.|.+...........   ..+...+|+|||+.|+........          ..+.+.+...+......   .+..
T Consensus        20 ~l~i~d~dG~~~~~l~~~~---~~~~sP~wSPDGk~IAf~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~~   83 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGR----------SALVIQTLANGAVRQVA---SFPR   83 (269)
T ss_dssp             EEEEEETTSCSCEEEEEES---SCEEEEEECTTSSEEEEEECTTSS----------CEEEEEETTTCCEEEEE---CCSS
T ss_pred             EEEEEcCCCCCcEEEecCC---CceeeeEECCCCCEEEEEEeeccC----------cceeeeecccCceeEEe---eeec
Confidence            4777777655444433333   467889999999999877654311          36677777776655444   2445


Q ss_pred             cEEEEEEccCCCEEEEEec-CCe--EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE-ecCCCe--EEEEeccCCC
Q 012699          295 AITSLCFNHNGKILAASAV-DGM--IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS-LGSDGK--IIEWSLQNQG  368 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~  368 (458)
                      ......|+|+|+.++.... ++.  +..+...... ...............+++++..++. ...++.  |...++....
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ccccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeeccccc
Confidence            6788999999998887554 333  2333333222 2222334445556677777765444 444554  4555554432


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS  447 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  447 (458)
                      ...          ............|+|+++.++..+.+ +...+|.............+........|+|||+.|+..+
T Consensus       163 ~~~----------~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         163 PQR----------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CEE----------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             cee----------eecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEE
Confidence            211          11234556778999999998877654 4445554444433445555666778899999999887544


Q ss_pred             C---CCcEEEEeCC
Q 012699          448 A---DHSVQVMSLS  458 (458)
Q Consensus       448 ~---dg~v~iw~l~  458 (458)
                      .   ...+.+++++
T Consensus       233 ~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         233 SQGMGSVLNLVSTD  246 (269)
T ss_dssp             EETTEEEEEEEETT
T ss_pred             cCCCCcEEEEEECC
Confidence            3   3457777763

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=5e-09  Score=89.50  Aligned_cols=232  Identities=9%  Similarity=0.004  Sum_probs=151.3

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-e
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-V  227 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~  227 (458)
                      .+..++++|||+++++...+++|..|+......    ........+.+++|. ++++++++...++.+..++...... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~----~~~~~~~~~~gla~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----IHATVEGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----EEEECSSEEEEEEEC-TTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE----EEEcCCCCcceEEEc-CCCCeEEEecCCceEEEEEecccccce
Confidence            477899999999999999999998888554321    233455778999999 6788888888888888887654322 1


Q ss_pred             eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--------cCCCCCcEEEE
Q 012699          228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP--------LGEDPPAITSL  299 (458)
Q Consensus       228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~--------~~~~~~~i~~~  299 (458)
                      ..+...........+.+.+++.++++....             +.+..+|...+.......        ..........+
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi  170 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYR-------------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  170 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTT-------------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeecccc-------------ccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence            122222222567889999999888776655             477777777654332211        11122345667


Q ss_pred             EEccCCCEEEEEecCCeEEEEeCCCCceeeee--eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699          300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGW--PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS  377 (458)
Q Consensus       300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  377 (458)
                      .++. +.++++.+..+.|+.++..........  .........+++.++|+++++...++.|..++..........    
T Consensus       171 ~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~----  245 (302)
T d2p4oa1         171 KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ----  245 (302)
T ss_dssp             EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEEC----
T ss_pred             cccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEe----
Confidence            6654 335556667888999987654322211  112334567999999998888878899988877643222111    


Q ss_pred             cccCCCCCCCceeEEEE---ccCCCEEEEEeCC
Q 012699          378 RFCDPESSKSCRHEMAL---DVNGRRLLVTSGS  407 (458)
Q Consensus       378 ~~~~~~~~~~~v~~~~~---s~~g~~l~~~~~~  407 (458)
                          .......++.++|   ++|++.|++++..
T Consensus       246 ----~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         246 ----AEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ----GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ----cCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                1122345789999   6788888876654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=2.5e-08  Score=83.97  Aligned_cols=165  Identities=7%  Similarity=0.047  Sum_probs=116.1

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR  225 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~  225 (458)
                      .......+++.+++.++++....+.+.+++... +.........+......+++. ++++++++....+.|.+||.. ++
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d~~~~~V~~~d~~-G~  188 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYE-GQ  188 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEEC-SSSEEEEEEGGGTEEEEEETT-CC
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeec-cceeEEeeeccccceeeeecC-Cc
Confidence            345567889999998888877777888887543 222221122334567788888 677888888888999999975 55


Q ss_pred             eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699          226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      .+.++...........+++.++++++++-..+.            +.|.+|+. +++.+..+...........+++.|+|
T Consensus       189 ~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~------------~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         189 YLRQIGGEGITNYPIGVGINSNGEILIADNHNN------------FNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS------------CEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             eeeeecccccccCCcccccccCCeEEEEECCCC------------cEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            566665444445678999999999777654332            37889984 56777666544444567899999999


Q ss_pred             CEEEEEecCCeEEEEeCCCCce
Q 012699          306 KILAASAVDGMIHMFDMSAGLQ  327 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~  327 (458)
                      .+ ++++.+..|++|......+
T Consensus       256 ~l-~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         256 SV-VLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EE-EEEETTTEEEEEECSCCCC
T ss_pred             cE-EEEeCCCeEEEEEeeeecC
Confidence            65 5556789999999876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.18  E-value=4.4e-07  Score=77.65  Aligned_cols=244  Identities=9%  Similarity=0.090  Sum_probs=151.7

Q ss_pred             CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC----CCcEEEEEc
Q 012699          146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA----DGGIKAWNV  221 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~wd~  221 (458)
                      ....+..++|.++|+++++-...+.|..|+.++.....  ...........++++ ++++++++...    .+.+...+.
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~--~~~~~~~~p~gla~~-~dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECT
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE--EEeCCCCCeeEEEEC-CCCCEEEEecCCCccceeEEEEcC
Confidence            33445689999999988877788999989877654322  222344567899998 67777766543    234555565


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      .++.................+.+.++|.+.++.......       ...+.+..++...........   .-...+.++|
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~-------~~~g~v~~~~~dg~~~~~~~~---~~~~pnGia~  184 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST-------NPLGGVYYVSPDFRTVTPIIQ---NISVANGIAL  184 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT-------BCCEEEEEECTTSCCEEEEEE---EESSEEEEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEeccceeecccccccc-------cCcceeEEEecccceeEEEee---ccceeeeeee
Confidence            555544433333333467889999999877764332110       112466666665433332221   1123678999


Q ss_pred             ccCCCEEEEE-ecCCeEEEEeCCCC-ceeee-------eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699          302 NHNGKILAAS-AVDGMIHMFDMSAG-LQITG-------WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       302 ~~~~~~l~~~-~~dg~i~v~d~~~~-~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                      +|+++.|+++ +..+.|+.||+... .....       ..........+++.++|++.++....+.|.+||-. ++... 
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~-  262 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIG-  262 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEE-
T ss_pred             ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEE-
Confidence            9999876554 55789999997642 21111       11112235689999999988888889999999954 43332 


Q ss_pred             eecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699          373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG  406 (458)
Q Consensus       373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  406 (458)
                      ....+.  ....+...+.+++|.|++..+++...
T Consensus       263 ~i~~P~--~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         263 QILIPG--RDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEECTT--GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEeCCC--cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            222111  12234456789999998887776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=3.4e-08  Score=84.21  Aligned_cols=230  Identities=11%  Similarity=0.023  Sum_probs=150.5

Q ss_pred             CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699          191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF  270 (458)
Q Consensus       191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (458)
                      ...+..+++. ++++++++...+++|..|+....... ... ..  ..+..+++.++++++++.....            
T Consensus        27 ~~~~e~iAv~-pdG~l~vt~~~~~~I~~i~p~g~~~~-~~~-~~--~~~~gla~~~dG~l~v~~~~~~------------   89 (302)
T d2p4oa1          27 NTFLENLASA-PDGTIFVTNHEVGEIVSITPDGNQQI-HAT-VE--GKVSGLAFTSNGDLVATGWNAD------------   89 (302)
T ss_dssp             TCCEEEEEEC-TTSCEEEEETTTTEEEEECTTCCEEE-EEE-CS--SEEEEEEECTTSCEEEEEECTT------------
T ss_pred             CCCcCCEEEC-CCCCEEEEeCCCCEEEEEeCCCCEEE-EEc-CC--CCcceEEEcCCCCeEEEecCCc------------
Confidence            3457789999 78889999999999999986644322 222 22  5688999999999888776553            


Q ss_pred             eeEEEEECCCC--ceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----------CCCCCe
Q 012699          271 ASLTVWNMKTW--KAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP----------AHDSAI  338 (458)
Q Consensus       271 g~i~i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----------~~~~~v  338 (458)
                       .+..++....  ....... .......+.+++.++++++++.+.++.+..+|...+.......          ......
T Consensus        90 -~~~~~~~~~~~~~~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          90 -SIPVVSLVKSDGTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             -SCEEEEEECTTSCEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             -eEEEEEecccccceeeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence             6666665432  2222222 2233568899999999988888888899999887654322111          112245


Q ss_pred             EEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699          339 SSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH  418 (458)
Q Consensus       339 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~  418 (458)
                      ..+.+..+ ..+++.+..+.|..++............       ......+..++++++|+++++...+++|..++..+.
T Consensus       168 ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         168 NGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEI-------FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEE-------EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             ccccccCC-ceeeecCCCCeEEecccccccccccccc-------ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            66666543 3555667788898888875433211100       011223567999999998888888899999988764


Q ss_pred             Ccc-cccCCCCCcEEEEEE---CCCCCeEEEec
Q 012699          419 ASG-MRTLPHGAAITTVDW---HPTLPMFLTGS  447 (458)
Q Consensus       419 ~~~-~~~~~h~~~v~~~~~---~~~~~~l~s~~  447 (458)
                      ... ......-..+++++|   ++|++.|+.++
T Consensus       240 ~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         240 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence            322 222223456899999   67888776544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.16  E-value=2e-07  Score=79.55  Aligned_cols=256  Identities=11%  Similarity=0.094  Sum_probs=152.3

Q ss_pred             CeEEEEeCCCCCEEEEEeC-------CCcEEEEecCCCCCCCccccc--cCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699          149 PISCCRFSSSGNNIASASV-------DGTVRIWTYDSSTPASRNATI--YCGTEIMSLEWECKSDRLLLIGTADGGIKAW  219 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w  219 (458)
                      ..-.++|.|+|+++++...       +++|..||..++.........  ........++|. ++++.++++...+.+...
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~-~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEe-CCCCEEEEEECCCeEEEE
Confidence            3556789999998776433       467888888776532111100  111235689998 666666667666778888


Q ss_pred             EcCCCceeeeccCCCC--CCceeeeeecCCCCeEEEeecccCCC--CcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699          220 NVDAKRVVCDLNTTDA--FPSVLDLKCSPVEPIFVSAAASRRYG--SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA  295 (458)
Q Consensus       220 d~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~  295 (458)
                      +.+.+...........  .....++++.++|.+.++........  .........|.|..++.. ++......   ....
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~---~~~~  173 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT---AFQF  173 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE---EESS
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC---Ccce
Confidence            8876543322211111  12357899999999888754322110  011111223566666553 23333221   1123


Q ss_pred             EEEEEEccCCC----EE-EEEecCCeEEEEeCCCCceee------eeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699          296 ITSLCFNHNGK----IL-AASAVDGMIHMFDMSAGLQIT------GWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWS  363 (458)
Q Consensus       296 i~~~~~~~~~~----~l-~~~~~dg~i~v~d~~~~~~~~------~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  363 (458)
                      .+.++|+|++.    +| ++-+..+.|+.||+.....+.      .+.. +......+++.++|+..++....+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            57899998764    44 445667889999876432221      2222 123456899999999888777788999999


Q ss_pred             ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE-eCCccEEEEEccCC
Q 012699          364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT-SGSVRAPIYQVRGH  418 (458)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~~~~i~i~~~~~~  418 (458)
                      ...........         .....+++++|.||++.|++. +.+++|+.+++...
T Consensus       254 p~~g~~~~~i~---------~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         254 PDGGQPKMRIR---------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTCBSCSEEEE---------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCEEEEEEE---------CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            77543222111         122457889999999866554 55688888887543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.7e-07  Score=84.68  Aligned_cols=293  Identities=12%  Similarity=0.079  Sum_probs=160.9

Q ss_pred             CCeEEEEeCCCCCEEEEEe---------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699          148 SPISCCRFSSSGNNIASAS---------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA  218 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~  218 (458)
                      -.+....||||+++++...         ..+.+.++|+.++..............+....|+ |+++.++... ++.|.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~  138 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeec-cCCceEEEEe-cceEEE
Confidence            3567788999999987763         3567889999887754322222233456668899 5666665554 567888


Q ss_pred             EEcCCCceeeeccCCCCC----------------CceeeeeecCCCCeEEEeecccCCCCcc------------------
Q 012699          219 WNVDAKRVVCDLNTTDAF----------------PSVLDLKCSPVEPIFVSAAASRRYGSSN------------------  264 (458)
Q Consensus       219 wd~~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------  264 (458)
                      .+..++...+........                ..-..+-|+|||+.|+....|...-...                  
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence            888777655443322110                1123577999999999876543211000                  


Q ss_pred             -eee--ccceeEEEEECCCCceeEEeecC----CCCCcEEEEEEccCCCEEEEEec-C---CeEEEEeCCCCceeeeeeC
Q 012699          265 -IYS--WGFASLTVWNMKTWKAMTVLPLG----EDPPAITSLCFNHNGKILAASAV-D---GMIHMFDMSAGLQITGWPA  333 (458)
Q Consensus       265 -~~~--~~~g~i~i~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~v~d~~~~~~~~~~~~  333 (458)
                       ..+  .....+.++|+.++.........    .....+..+.|+|++++++.... +   ..+.++|..+++....+..
T Consensus       219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e  298 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED  298 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE
Confidence             000  11136788888776543322111    11224778999999886665432 1   3688899998876655432


Q ss_pred             CC-CC----eEEEEEcCCCCEEEE---ecCCC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeE-EEEccCCCEEE
Q 012699          334 HD-SA----ISSILFGPDETSIFS---LGSDG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE-MALDVNGRRLL  402 (458)
Q Consensus       334 ~~-~~----v~~~~~~~~~~~l~~---~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~  402 (458)
                      .. ..    -....|+|+|+.++.   .-.+|  .+....+.......   ............-.|.. ++|+++++.++
T Consensus       299 ~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~---~~~~~~~LT~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS---SNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS---SSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccC---CCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence            22 21    134578899985432   22232  34433332110000   00000111112333444 46899887776


Q ss_pred             E-EeCC--ccEEEEEc--cCCCccccc---CCCCCcEEEEEECCCCCeEEE
Q 012699          403 V-TSGS--VRAPIYQV--RGHASGMRT---LPHGAAITTVDWHPTLPMFLT  445 (458)
Q Consensus       403 ~-~~~~--~~i~i~~~--~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s  445 (458)
                      . +..+  +.-++|.+  .+......+   ........++.|||++++++.
T Consensus       376 F~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~  426 (465)
T d1xfda1         376 FLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (465)
T ss_dssp             EEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             EEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEE
Confidence            4 4333  23345544  433222211   234456779999999997774

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.9e-08  Score=89.86  Aligned_cols=274  Identities=9%  Similarity=0.038  Sum_probs=156.9

Q ss_pred             EeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-ccCCCceEEEEEecCCCeEEEEEc---------CCCcEEEEEcCC
Q 012699          154 RFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-IYCGTEIMSLEWECKSDRLLLIGT---------ADGGIKAWNVDA  223 (458)
Q Consensus       154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~  223 (458)
                      .|.+++.++.. ..+|.+.+||+.+++....... ......+....|+ +++++++...         ..+.+.+||+.+
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S-pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEEC-CCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            57788776654 4578899999987764321111 1112356677888 6676666553         357889999998


Q ss_pred             CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc--------
Q 012699          224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA--------  295 (458)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~--------  295 (458)
                      +..............+....|+|+|+.++.....              .|.+.+...+...+... .+....        
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~--------------nl~~~~~~~~~~~~lt~-~g~~~~i~nG~~d~  165 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN--------------NIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDW  165 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT--------------EEEEESSSSSCCEEEEC-CCBTTTEEEEECCH
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEecc--------------eEEEEecCCCceEEEec-ccCcceeeccccch
Confidence            8765443333333556779999999999887754              78888877766554432 222221        


Q ss_pred             ---------EEEEEEccCCCEEEEEecC-C---------------------------------eEEEEeCCCCceeeeee
Q 012699          296 ---------ITSLCFNHNGKILAASAVD-G---------------------------------MIHMFDMSAGLQITGWP  332 (458)
Q Consensus       296 ---------i~~~~~~~~~~~l~~~~~d-g---------------------------------~i~v~d~~~~~~~~~~~  332 (458)
                               -..+.|||||++||....| .                                 .+.++|+.++.......
T Consensus       166 vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~  245 (465)
T d1xfda1         166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (465)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             hhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEe
Confidence                     2467899999999986432 2                                 24445554332211111


Q ss_pred             ------CCCCCeEEEEEcCCCCEEEEecC----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699          333 ------AHDSAISSILFGPDETSIFSLGS----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL  402 (458)
Q Consensus       333 ------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  402 (458)
                            ....-+..+.|+|+++.++....    ...+.++|..++...........    .-.........|+|||+.++
T Consensus       246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~----~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE----AWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS----SCCCCCCCCCEECTTSCSEE
T ss_pred             ccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC----ceEeccCCceeEccCCCeeE
Confidence                  11223677899999876655332    22588888887654332211100    00011123468999998543


Q ss_pred             E--Ee-CC--ccEEEEEcc------CCCcccccCCCCCcEEEE-EECCCCCeEE-EecC
Q 012699          403 V--TS-GS--VRAPIYQVR------GHASGMRTLPHGAAITTV-DWHPTLPMFL-TGSA  448 (458)
Q Consensus       403 ~--~~-~~--~~i~i~~~~------~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-s~~~  448 (458)
                      .  .+ .+  +.++...+.      .+.....+....-.|..+ +|+++++.+. ++..
T Consensus       322 fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~  380 (465)
T d1xfda1         322 FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (465)
T ss_dssp             EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             EEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence            2  22 23  334444432      122223333445566665 6888877543 4433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.99  E-value=7.8e-07  Score=75.03  Aligned_cols=230  Identities=13%  Similarity=0.101  Sum_probs=149.9

Q ss_pred             EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE
Q 012699          196 SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV  275 (458)
Q Consensus       196 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i  275 (458)
                      ...|++.++.++.+--..+.|..||.++++.. .+...   ..+.++++.+++.++++. .+              .+..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~---~~~~~i~~~~dg~l~va~-~~--------------gl~~   82 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP---FMGSALAKISDSKQLIAS-DD--------------GLFL   82 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS---SCEEEEEEEETTEEEEEE-TT--------------EEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECC---CCcEEEEEecCCCEEEEE-eC--------------ccEE
Confidence            45688667777777667889999999988654 23222   357788888888777654 33              7899


Q ss_pred             EECCCCceeEEeecCCC--CCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699          276 WNMKTWKAMTVLPLGED--PPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS  349 (458)
Q Consensus       276 ~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  349 (458)
                      +|..+++..........  ...++.+.+.|+|++.++...    .+.-.+|.+..++....... -...+.++|+++++.
T Consensus        83 ~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1          83 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTT  161 (295)
T ss_dssp             EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCE
T ss_pred             eecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCce
Confidence            99998876554433222  235889999999987665432    23456666666655444332 345678999999986


Q ss_pred             EE-EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC
Q 012699          350 IF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG  428 (458)
Q Consensus       350 l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~  428 (458)
                      ++ +-+..+.|..|++......... ....+.........+..+++..+|++.++.-..+.|..|+.++. .+..+.-..
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~-~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~-~~~~i~lP~  239 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN-HIARYEVPG  239 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC-EEEEEECSC
T ss_pred             EEEeecccceeeEeeeccccccccc-ceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc-EeeEecCCC
Confidence            54 5566888999987543211100 00011112234456788999999998888778889999997544 444433334


Q ss_pred             CcEEEEEEC-CCCC-eEEEec
Q 012699          429 AAITTVDWH-PTLP-MFLTGS  447 (458)
Q Consensus       429 ~~v~~~~~~-~~~~-~l~s~~  447 (458)
                      ..+++++|- |+.+ +++|..
T Consensus       240 ~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         240 KQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             SBEEEEEEESTTSCEEEEEEB
T ss_pred             CceEEEEEeCCCCCEEEEEEC
Confidence            579999995 6666 444433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=3e-05  Score=65.04  Aligned_cols=225  Identities=11%  Similarity=0.075  Sum_probs=142.1

Q ss_pred             EEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699          152 CCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       152 ~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  230 (458)
                      +..|.+. ++++.+--..+.|..||..+++..    .......+.++++. .++.++++ +.+ .+..+|..+++.....
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~----~~~~~~~~~~i~~~-~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT----VHALPFMGSALAKI-SDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEECSSCEEEEEEE-ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE----EEECCCCcEEEEEe-cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            4568774 444455456788999998876532    23345677888887 56666655 444 5889999988765433


Q ss_pred             cC--CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699          231 NT--TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL  308 (458)
Q Consensus       231 ~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  308 (458)
                      ..  ......+.++.+.|+|.+.++........         +.-.+|.+..++......   .....+.++|+++++.+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~---------~~g~l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l  162 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAET---------GAGSIYHVAKGKVTKLFA---DISIPNSICFSPDGTTG  162 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCT---------TCEEEEEEETTEEEEEEE---EESSEEEEEECTTSCEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccc---------cceeEeeecCCcEEEEee---ccCCcceeeecCCCceE
Confidence            22  22224688999999999877765432111         234455555555444432   12346889999999866


Q ss_pred             EEE-ecCCeEEEEeCCCC------ce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699          309 AAS-AVDGMIHMFDMSAG------LQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF  379 (458)
Q Consensus       309 ~~~-~~dg~i~v~d~~~~------~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  379 (458)
                      +.. +..+.|+.|++...      +.  ...+.+..+....+++..+|++.++.-..+.|..||-. ++.... ...   
T Consensus       163 ~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~-i~l---  237 (295)
T d2ghsa1         163 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR-YEV---  237 (295)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE-EEC---
T ss_pred             EEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeE-ecC---
Confidence            554 55788999987431      11  11222344567889999999877776677889999964 333322 111   


Q ss_pred             cCCCCCCCceeEEEEc-cCCCEEEEEe
Q 012699          380 CDPESSKSCRHEMALD-VNGRRLLVTS  405 (458)
Q Consensus       380 ~~~~~~~~~v~~~~~s-~~g~~l~~~~  405 (458)
                           ....+++++|- ||.+.|++.+
T Consensus       238 -----P~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         238 -----PGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             -----SCSBEEEEEEESTTSCEEEEEE
T ss_pred             -----CCCceEEEEEeCCCCCEEEEEE
Confidence                 12357899995 6777776654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.53  E-value=1.4e-05  Score=68.30  Aligned_cols=210  Identities=12%  Similarity=0.126  Sum_probs=127.1

Q ss_pred             CCeEEEEEc-CCCcEEEEEcCCCceeeeccCCCCCCceeeeee--cCCCCeEEEeecccC----CCCcce-eeccceeEE
Q 012699          203 SDRLLLIGT-ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC--SPVEPIFVSAAASRR----YGSSNI-YSWGFASLT  274 (458)
Q Consensus       203 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~----~~~~~~-~~~~~g~i~  274 (458)
                      ++++++... .+..|.+.|+++.+....+..+.. ..+..+..  .|+..+++..+....    .+..+- ...-.+.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~-~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCC-CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            466666654 688999999999998665544332 34555554  455567776665431    000000 001115678


Q ss_pred             EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC---------------eE----------------------
Q 012699          275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG---------------MI----------------------  317 (458)
Q Consensus       275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i----------------------  317 (458)
                      .+|..+.+....+...+.   ...+.++++|+++++.+.+.               .+                      
T Consensus       177 ~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEecCCceEEEEeeeCCC---hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            899999988888776543   56789999999999876431               23                      


Q ss_pred             -EEEeCCC--C-ceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeec--CCcccCCCCCCCcee
Q 012699          318 -HMFDMSA--G-LQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRN--CSRFCDPESSKSCRH  390 (458)
Q Consensus       318 -~v~d~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~v~  390 (458)
                       .+.|.+.  + ..++.++. ......+..+|||+++++++. +.++.++|+++.........  ...............
T Consensus       254 V~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             ceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence             3333332  1 11222222 223557899999999887665 99999999975322210000  001111122445567


Q ss_pred             EEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          391 EMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       391 ~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      .-+|+..|.-..+-.-|.+|.-|++..
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccccCCCceEEEEeeccceEEEEecch
Confidence            789999886555556799999999853

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.52  E-value=9.3e-06  Score=67.68  Aligned_cols=235  Identities=12%  Similarity=0.067  Sum_probs=122.8

Q ss_pred             EeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCC-----cEEEEEcCCCc
Q 012699          154 RFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADG-----GIKAWNVDAKR  225 (458)
Q Consensus       154 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-----~i~~wd~~~~~  225 (458)
                      ..+||  |+.++..+ ++.|.+.|+.+++...   ...........+|+ ++++.|+... .++     .|.+++..+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~---Lt~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK---IVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE---EECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE---EecCCCcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            35788  98887765 4668888998876532   33455677889999 5666666543 222     47777887777


Q ss_pred             eeeeccCCC----CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699          226 VVCDLNTTD----AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF  301 (458)
Q Consensus       226 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  301 (458)
                      .........    .........|+|+++.++...........       ..+...+...+......   .  .......+
T Consensus        80 ~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~---~--~~~~~~~~  147 (281)
T d1k32a2          80 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSM-------TCLYRVENDGINFVPLN---L--GPATHILF  147 (281)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTC-------CEEEEEEGGGTEEEECC---S--CSCSEEEE
T ss_pred             eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccc-------eeeeeecCCCceeEEec---C--Cccceeee
Confidence            654322211    11234578899999988876543211111       24455555544332211   1  11222333


Q ss_pred             ccCCCEEEEEecCC-----------eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccCCC
Q 012699          302 NHNGKILAASAVDG-----------MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQNQG  368 (458)
Q Consensus       302 ~~~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~  368 (458)
                      .+.+..++....+.           ........... ......+........++++. .+.....  ...|.++|+....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~  225 (281)
T d1k32a2         148 ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKD  225 (281)
T ss_dssp             ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCS
T ss_pred             cCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCc
Confidence            33333333322111           11122222122 22223334445555666553 2333333  3347777776543


Q ss_pred             eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699          369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA  419 (458)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~  419 (458)
                      ...       +.    .........|+|||+.|+... ++.++++|+.+++
T Consensus       226 ~~~-------lt----~~~~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~  264 (281)
T d1k32a2         226 LRK-------HT----SFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK  264 (281)
T ss_dssp             CEE-------CC----CCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCC
T ss_pred             eEE-------ee----cCCCcccccCcCCCCEEEEEe-CCEEEEEECCCCC
Confidence            221       11    111122346899999988744 5789999998774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=3.5e-05  Score=65.84  Aligned_cols=238  Identities=10%  Similarity=0.067  Sum_probs=148.4

Q ss_pred             EEEEEcCCCcEEEEEcCCCceeeeccCCCCCC-------------------------------------ce--eeeeecC
Q 012699          206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP-------------------------------------SV--LDLKCSP  246 (458)
Q Consensus       206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-------------------------------------~v--~~~~~~~  246 (458)
                      .+.+|+..|.++++-+.+++.+..+.......                                     ..  ..+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            36678889999999999888776654322110                                     00  0122222


Q ss_pred             ---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc--CCCEEEEEecC-------
Q 012699          247 ---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--NGKILAASAVD-------  314 (458)
Q Consensus       247 ---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d-------  314 (458)
                         ||++++......            +.|.+.|+++.+..+.+... ....+..+...+  +-.|++.++.+       
T Consensus        95 GtyDGrylFVNDkan------------~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          95 GKYDGRFLFMNDKAN------------TRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             TEEEEEEEEEEETTT------------TEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CccceeEEEEEcCCC------------ceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCC
Confidence               455555554433            69999999999988877653 334567777654  45577776653       


Q ss_pred             -----------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---------------eEEEEeccC--
Q 012699          315 -----------GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---------------KIIEWSLQN--  366 (458)
Q Consensus       315 -----------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~--  366 (458)
                                 +.+.++|..+.+...++.. .+....+.++|+|+++++.+.+.               .+.+++...  
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             CccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence                       2367889888877766654 33566899999999988876431               244444421  


Q ss_pred             ------------CCeeEEeecC--CcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc-------cc--
Q 012699          367 ------------QGQVLWTRNC--SRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS-------GM--  422 (458)
Q Consensus       367 ------------~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~-------~~--  422 (458)
                                  +-.++.....  .............+.+.++|||+++++++. +.++.++|++.-..       ..  
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                        0011110000  001001112334677999999999998876 78999999963211       11  


Q ss_pred             --ccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699          423 --RTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL  457 (458)
Q Consensus       423 --~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l  457 (458)
                        ......-....-+|+..|....|---|..|--|++
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence              11123446778899998876777778999999986

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.51  E-value=1.2e-05  Score=67.06  Aligned_cols=227  Identities=7%  Similarity=-0.077  Sum_probs=117.3

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA  283 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~  283 (458)
                      ++.++..+ +|.|.+.|+.+++.... ....  .......|+|||+.++.........       ....|.+++..+++.
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~L-t~~~--~~~~~p~~SPDG~~iaf~~~~~~~~-------~~~~i~~~~~~~g~~   80 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKI-VSNL--GVINNARFFPDGRKIAIRVMRGSSL-------NTADLYFYNGENGEI   80 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEE-ECSS--SEEEEEEECTTSSEEEEEEEESTTC-------CEEEEEEEETTTTEE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEE-ecCC--CcccCEEECCCCCEEEEEEeeCCCC-------CceEEEEEEecCCce
Confidence            44555443 45788889998876543 2222  5678899999999988765432100       013678888887766


Q ss_pred             eEEeecC----CCCCcEEEEEEccCCCEEEEEecC------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          284 MTVLPLG----EDPPAITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       284 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      .......    .........+|+|+|+.|+.....      ..+...+...+.....   +........+.+.+..++..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  157 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRN  157 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEES
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEee
Confidence            5432111    111234678899999998875432      2355556554443322   22233333343343344433


Q ss_pred             cCCCe-----------EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCc
Q 012699          354 GSDGK-----------IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHAS  420 (458)
Q Consensus       354 ~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~  420 (458)
                      ..+..           .............          ............++++.. +.....  ...|+++|+.+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~  226 (281)
T d1k32a2         158 TFELPHWKGYRGGTRGKIWIEVNSGAFKK----------IVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDL  226 (281)
T ss_dssp             CSCCTTSTTCCSTTCCEEEEEEETTEEEE----------EECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSC
T ss_pred             ccccceeeeeccCCcceeeeeccccceee----------ccCCccccceeeeecccc-ceecccccccceEEEeCCCCce
Confidence            22211           1111111111110          011222233444555432 222222  34688888877653


Q ss_pred             ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699          421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS  458 (458)
Q Consensus       421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~  458 (458)
                      ..........+  ..|+|||+.|+.. .++.|+++|++
T Consensus       227 ~~lt~~~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         227 RKHTSFTDYYP--RHLNTDGRRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             EECCCCCSSCE--EEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             EEeecCCCccc--ccCcCCCCEEEEE-eCCEEEEEECC
Confidence            32222222233  4689999987764 36778888764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=0.00019  Score=57.89  Aligned_cols=262  Identities=13%  Similarity=0.141  Sum_probs=162.5

Q ss_pred             CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699          168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV  247 (458)
Q Consensus       168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  247 (458)
                      ...|.|-|+.......+ ....    .-+.-.+ |....|+.-+ ..++.++|+++.+.++.+...+   +|.--.|-.+
T Consensus        44 ~~~VvIidl~n~~~~~R-rpi~----AdsAIMh-P~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~  113 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIR-RPIS----ADSAIMN-PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL  113 (327)
T ss_dssp             EEEEEEEETTSTTSCEE-EECC----CSEEEEC-SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSS
T ss_pred             CceEEEEECCCCCccee-cccc----hhhhhcC-CCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCC
Confidence            34788889876554321 1111    1233345 5556665554 5589999999999988877664   4555566555


Q ss_pred             CCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCC--CCcEEEEEEccCCCEEEEEe-------cCCeE
Q 012699          248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGED--PPAITSLCFNHNGKILAASA-------VDGMI  317 (458)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~-------~dg~i  317 (458)
                      ..+-+.+. .              .|+-|+++. ..+.+.+.....  ...|.....+++.++++..+       -.|.+
T Consensus       114 ~~L~lVT~-t--------------aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~m  178 (327)
T d1utca2         114 NTVALVTD-N--------------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  178 (327)
T ss_dssp             SEEEEECS-S--------------EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEcC-C--------------ceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEE
Confidence            44433333 2              899999954 245555543221  34677888889999887543       24788


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEcC--CC-CEEEEe---cCCCeEEEEeccCCC---eeEEeecCCcccCCCCCCCc
Q 012699          318 HMFDMSAGLQITGWPAHDSAISSILFGP--DE-TSIFSL---GSDGKIIEWSLQNQG---QVLWTRNCSRFCDPESSKSC  388 (458)
Q Consensus       318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~l~~~---~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~  388 (458)
                      .+|..+. +.-+.+.+|......+.+.-  +. ..++.+   ...+++.+.++....   .........-+..++.....
T Consensus       179 QLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DF  257 (327)
T d1utca2         179 QLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF  257 (327)
T ss_dssp             EEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCC
T ss_pred             EEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCc
Confidence            9999874 34455667755444443321  11 122222   234689999987632   22222223344556667788


Q ss_pred             eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699          389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM  455 (458)
Q Consensus       389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  455 (458)
                      +-++..|+.-..++..+.-|.+++||++++..+..-.--.++|..-+-+.+..=++....+|.|.--
T Consensus       258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~v  324 (327)
T d1utca2         258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV  324 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             EEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEEE
Confidence            8999999999999999999999999999987665544444555544444444445555577766543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.39  E-value=0.00054  Score=59.64  Aligned_cols=295  Identities=10%  Similarity=0.027  Sum_probs=153.8

Q ss_pred             eEEEEeCCCCCEEEEEeCCC-----------cEEEEecCCCCCCCcccc-ccCCCceEEEEEecCCCeEEEEEcCC-CcE
Q 012699          150 ISCCRFSSSGNNIASASVDG-----------TVRIWTYDSSTPASRNAT-IYCGTEIMSLEWECKSDRLLLIGTAD-GGI  216 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i  216 (458)
                      +.......+|+.++.|+.+.           .+.+||..++........ ..+.......++. .++.+++.|+.+ ..+
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe-cCCcEEEeecCCCcce
Confidence            33444556788888777421           377899988765432111 1122223345566 678888887655 589


Q ss_pred             EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC-----
Q 012699          217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE-----  291 (458)
Q Consensus       217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~-----  291 (458)
                      .+||..+......-..... ..-...+..+++++++.++......       ....+.+||+.+.+-...-....     
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~~~~~  172 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGV-------FEKNGEVYSPSSKTWTSLPNAKVNPMLT  172 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSS-------CCCCEEEEETTTTEEEEETTSCSGGGCC
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeecccccccc-------ccceeeeecCCCCceeecCCCccccccc
Confidence            9999998776543222221 2234567778999988887643211       11378899998765432211000     


Q ss_pred             --CC-----CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee--eC----CC--CCeEEEEE-cCCCCEEEEecC
Q 012699          292 --DP-----PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW--PA----HD--SAISSILF-GPDETSIFSLGS  355 (458)
Q Consensus       292 --~~-----~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~----~~--~~v~~~~~-~~~~~~l~~~~~  355 (458)
                        +.     ..-..+...++|+.++.+...+.+.+++..+.......  ..    +.  ..-.++.+ ..+++.++.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~  252 (387)
T d1k3ia3         173 ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  252 (387)
T ss_dssp             CCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             ccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEec
Confidence              00     00111233456777777777777888887765432211  10    01  11122223 235667777664


Q ss_pred             CC--------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----------cEEEEEcc
Q 012699          356 DG--------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----------RAPIYQVR  416 (458)
Q Consensus       356 dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----------~i~i~~~~  416 (458)
                      ..        ...+.++...........  . .........-.+....+||+++++|+.+.           .+.+||..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~  329 (387)
T d1k3ia3         253 PDYQDSDATTNAHIITLGEPGTSPNTVF--A-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  329 (387)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCEEEE--C-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             cCCCCCcccceeecccccccccCCCcee--e-ccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECC
Confidence            21        233333332211110000  0 01111222334566678999999888531           47889987


Q ss_pred             CCCc--ccccCCCCCc-EEEEEECCCCCeEEEecC---C-----CcEEEEeC
Q 012699          417 GHAS--GMRTLPHGAA-ITTVDWHPTLPMFLTGSA---D-----HSVQVMSL  457 (458)
Q Consensus       417 ~~~~--~~~~~~h~~~-v~~~~~~~~~~~l~s~~~---d-----g~v~iw~l  457 (458)
                      +.+-  +... .+... =......+||++|+.|+.   +     -.|.+|+.
T Consensus       330 ~~~W~~~~~~-~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P  380 (387)
T d1k3ia3         330 QDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP  380 (387)
T ss_dssp             GTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred             CCeEEECCCC-CCcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence            6531  1111 11110 012345799999998874   2     24666663

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=0.00094  Score=54.37  Aligned_cols=249  Identities=8%  Similarity=0.001  Sum_probs=145.7

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCcc---ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRN---ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP  237 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  237 (458)
                      +|+-+. .+.|+-.+++........   ........+..++|++.++.++.+-..++.|+..+++.......+...  ..
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~--~~   79 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--LG   79 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--CC
T ss_pred             EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec--cc
Confidence            444433 346777777654432111   112223457788999666666666667788999988766544433322  24


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC---
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD---  314 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---  314 (458)
                      .+..+++...+..+..+....            +.|.+.++........+.  .....+..++++|...+++.....   
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~------------~~I~~~~~dg~~~~~l~~--~~l~~p~~l~vdp~~g~ly~t~~~~~~  145 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQL------------DRIEVAKMDGTQRRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDN  145 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred             cccEEEEeccCCeEEEeccCC------------CEEEEEecCCceEEEEec--ccccCCcEEEEecccCcEEEeecCCCC
Confidence            578899987777666554433            489999987655433332  233568899999987777654332   


Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA  393 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  393 (458)
                      +.|...++............-.....+++.+.++.|+.+ ...+.|...++..........         .. ..+..++
T Consensus       146 ~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~---------~~-~~P~~la  215 (263)
T d1npea_         146 PKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---------GL-QYPFAVT  215 (263)
T ss_dssp             CEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---------CC-CSEEEEE
T ss_pred             cEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC---------CC-CCcEEEE
Confidence            235555665433333233333566899999877777555 567889988887543221111         11 1245666


Q ss_pred             EccCCCEEEEEe-CCccEEEEEccCCCcccccCC-CCCcEEEEEECC
Q 012699          394 LDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHP  438 (458)
Q Consensus       394 ~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~  438 (458)
                      +.  +.+|+... ..+.|...|..+++....+.. ....+.+++..+
T Consensus       216 v~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         216 SY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            64  55666655 567888888887655433332 223344555433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=0.0015  Score=53.25  Aligned_cols=237  Identities=11%  Similarity=-0.024  Sum_probs=138.7

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFP  237 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~  237 (458)
                      +|+.+.. ..|+..++++.....   .......+..++|++..+.+..+-..++.|...++.....   ...+. .....
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~---~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~   77 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQ   77 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCS
T ss_pred             EEEEECC-CeEEEEECCCCccee---eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-eCCCC
Confidence            3444332 358888887654332   2334456788999955555555555677777776653221   11111 11124


Q ss_pred             ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe--cCC
Q 012699          238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA--VDG  315 (458)
Q Consensus       238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg  315 (458)
                      .+..+++.+.+..+..+....            +.|.+.++..........  ........++++|...+|+...  ..+
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~------------~~I~v~~~~g~~~~~~~~--~~~~~P~~l~vd~~~g~ly~~~~~~~~  143 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPA  143 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTT------------TEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CcceEEEeeccceEEEEecCC------------CEEEeEecCCceEEEEEc--CCCCCcceEEEEcccCeEEEeccCCCc
Confidence            567788887777666655443            489999998766544443  2334578999999766666544  345


Q ss_pred             eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699          316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL  394 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  394 (458)
                      .|...++............-.....+++.+.++.|+.+ ...+.|...++...........       ......+..+++
T Consensus       144 ~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~-------~~~~~~p~~lav  216 (266)
T d1ijqa1         144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------EKRLAHPFSLAV  216 (266)
T ss_dssp             EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-------TTTTSSEEEEEE
T ss_pred             ceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeC-------CCcccccEEEEE
Confidence            67777776443333333334567899999977766655 5578899999875433221111       111223455666


Q ss_pred             ccCCCEEEEEe-CCccEEEEEccCCCcccccC
Q 012699          395 DVNGRRLLVTS-GSVRAPIYQVRGHASGMRTL  425 (458)
Q Consensus       395 s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~  425 (458)
                      .  +.+|+.+. .++.|+..+..++.....+.
T Consensus       217 ~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         217 F--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             E--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             E--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            5  45566554 56778887777665444333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.02  E-value=0.00087  Score=58.28  Aligned_cols=236  Identities=10%  Similarity=0.017  Sum_probs=124.6

Q ss_pred             ecCCCeEEEEEcCCC-----------cEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699          200 ECKSDRLLLIGTADG-----------GIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS  267 (458)
Q Consensus       200 ~~~~~~~l~~~~~dg-----------~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (458)
                      .+.++++++.|+.+.           .+.+||..+++......... +.......++.+++.+++.++.+.         
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~---------   97 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---------   97 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST---------
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC---------
Confidence            336677777776421           36789999876532211111 112234567889999999887664         


Q ss_pred             ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC------CeEEEEeCCCCceeeeee---------
Q 012699          268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQITGWP---------  332 (458)
Q Consensus       268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~---------  332 (458)
                         ..+.+||..+......-... ....-...+..+||++++.|+.+      ..+.+||..+.+....-.         
T Consensus        98 ---~~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~  173 (387)
T d1k3ia3          98 ---KKTSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA  173 (387)
T ss_dssp             ---TCEEEEEGGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred             ---cceeEecCccCccccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccc
Confidence               38899999886654432222 22233567777899999988753      368999988754321100         


Q ss_pred             CCC-----CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE-ccCCCEEEEEeC
Q 012699          333 AHD-----SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL-DVNGRRLLVTSG  406 (458)
Q Consensus       333 ~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~  406 (458)
                      .+.     ..-..+...++++.++.+..++.+.+++..+......... ............-.++.+ ..+++.++.|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~  252 (387)
T d1k3ia3         174 DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR-QSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  252 (387)
T ss_dssp             CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC-EETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             cccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeecccc-ccCcccCcccccccEEEeeccCCceEEEEec
Confidence            000     0111123345777788787777788877765432211100 000000011111122223 346777777764


Q ss_pred             Cc--------cEEEEEccCCCcc---cccC---CCCCcEEEEEECCCCCeEEEecCC
Q 012699          407 SV--------RAPIYQVRGHASG---MRTL---PHGAAITTVDWHPTLPMFLTGSAD  449 (458)
Q Consensus       407 ~~--------~i~i~~~~~~~~~---~~~~---~h~~~v~~~~~~~~~~~l~s~~~d  449 (458)
                      ..        ...+.++......   ....   .+...-.+....+++++++.||.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~  309 (387)
T d1k3ia3         253 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  309 (387)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             cCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence            31        2333333221110   1111   122222345566899999998854

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.01  E-value=0.00083  Score=61.57  Aligned_cols=273  Identities=10%  Similarity=0.048  Sum_probs=143.6

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCcccccc--CCCceEEEEEecCCCeEEEEEc------CCCcEEEEEcCCCceeeeccC
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNATIY--CGTEIMSLEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVCDLNT  232 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~  232 (458)
                      .|+.++.||.+.--|.++++.........  ....+..--.- .++. ++.+.      ..|.|+-+|+.+|+.+..+..
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v-~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeE-eCCe-EEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            56666777777777777776532211110  01111100000 1233 44443      367899999999998876543


Q ss_pred             CCCC-----------------------------------Cce-eeeeecCCCCeEEEeecccCCCCcceeec---cceeE
Q 012699          233 TDAF-----------------------------------PSV-LDLKCSPVEPIFVSAAASRRYGSSNIYSW---GFASL  273 (458)
Q Consensus       233 ~~~~-----------------------------------~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~i  273 (458)
                      ....                                   ..+ ...++.+....+..+..............   -...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            2110                                   011 23455666666655544321111110000   02478


Q ss_pred             EEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCC--------
Q 012699          274 TVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHD--------  335 (458)
Q Consensus       274 ~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------  335 (458)
                      .-.|.++++....++...|.       .......+..+++   .++.++.+|.++++|..+++++...+...        
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~  354 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence            88999999998888754332       1112222233443   56778899999999999998764322110        


Q ss_pred             -----------------------------C--CeEEEEEcCCCCEEEEecCC----------------------------
Q 012699          336 -----------------------------S--AISSILFGPDETSIFSLGSD----------------------------  356 (458)
Q Consensus       336 -----------------------------~--~v~~~~~~~~~~~l~~~~~d----------------------------  356 (458)
                                                   +  .-...+++|+...++....+                            
T Consensus       355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (571)
T d2ad6a1         355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence                                         0  00124666766666554433                            


Q ss_pred             ---------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-C
Q 012699          357 ---------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-P  426 (458)
Q Consensus       357 ---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~  426 (458)
                               |.|.-+|+.+++..-.......          ..+-.++-.+.++++++.|+.++-+|.++++.+.+.. +
T Consensus       435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~----------~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA----------AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEESSC----------CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCcccCCcccEEEeccCCCceeeEcCCCCC----------CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence                     3455555555433222111100          0111122356688889999999999999998886654 2


Q ss_pred             CCCcEEEEEECCCCC-eEEE
Q 012699          427 HGAAITTVDWHPTLP-MFLT  445 (458)
Q Consensus       427 h~~~v~~~~~~~~~~-~l~s  445 (458)
                      ....-.-+.|..||+ ++++
T Consensus       505 ~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         505 SGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             SCCCSCCEEEEETTEEEEEE
T ss_pred             CCceecceEEEECCEEEEEE
Confidence            111111245555787 4443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.81  E-value=0.0073  Score=55.38  Aligned_cols=169  Identities=12%  Similarity=0.096  Sum_probs=93.1

Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCCCcccccc--CCCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceeee
Q 012699          159 GNNIASASVDGTVRIWTYDSSTPASRNATIY--CGTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVCD  229 (458)
Q Consensus       159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~  229 (458)
                      +.+++.++.|+.+.-.|.++++.........  ....++. -.+.   +..++.+..      .|.|+-+|+.+|+.+.+
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE---CCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence            3467777778877777777776543221110  0011110 0111   233555432      48999999999999876


Q ss_pred             ccCCCC------------------------------------CCceeeeeecCCCCeEEEeecccCCCCcceeecc---c
Q 012699          230 LNTTDA------------------------------------FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG---F  270 (458)
Q Consensus       230 ~~~~~~------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  270 (458)
                      +.....                                    ...-..+++.+....+..+..+............   .
T Consensus       198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccc
Confidence            543210                                    0011234556666666555433211000000000   2


Q ss_pred             eeEEEEECCCCceeEEeecCCCCC-------cEEEEE-EccCC---CEEEEEecCCeEEEEeCCCCceeee
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPP-------AITSLC-FNHNG---KILAASAVDGMIHMFDMSAGLQITG  330 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~-------~i~~~~-~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~  330 (458)
                      ..+.-.|+++++....++...|..       ....+. ...+|   +.++.+..+|.++++|..+++++..
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence            478889999999998887554421       122222 12344   3677888999999999999887643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.0063  Score=49.26  Aligned_cols=207  Identities=8%  Similarity=-0.019  Sum_probs=128.1

Q ss_pred             CCCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699          146 HTSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK  224 (458)
Q Consensus       146 h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~  224 (458)
                      +...+..++|.+..+.|+-. ..++.|+..++++.....  .....-..+..++++...+.+..+-...+.|.+.++...
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~--v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE--EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            34457789999877766554 456788888887654321  111122467888888556666667677889999998866


Q ss_pred             ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699          225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN  304 (458)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  304 (458)
                      .....+...  ...+..+++.|....++.......          .+.|.--++......... . ..-.....+++++.
T Consensus       112 ~~~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~----------~~~I~r~~~dG~~~~~i~-~-~~~~~P~glaiD~~  177 (263)
T d1npea_         112 QRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRD----------NPKIETSHMDGTNRRILA-Q-DNLGLPNGLTFDAF  177 (263)
T ss_dssp             SCEEEECSS--CSSEEEEEEETTTTEEEEEECCSS----------SCEEEEEETTSCCCEEEE-C-TTCSCEEEEEEETT
T ss_pred             eEEEEeccc--ccCCcEEEEecccCcEEEeecCCC----------CcEEEEecCCCCCceeee-e-ecccccceEEEeec
Confidence            543322222  246789999998887765543210          023544555543333322 1 22345789999988


Q ss_pred             CCEEEEE-ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699          305 GKILAAS-AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV  370 (458)
Q Consensus       305 ~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  370 (458)
                      ++.|+.. ...+.|...|+........+.+.. ...+|++. ++....+-...+.|...|..+++..
T Consensus       178 ~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         178 SSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccc
Confidence            8777665 456789999987654443444433 34577775 3434445456788888888765443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.73  E-value=0.0085  Score=54.57  Aligned_cols=221  Identities=14%  Similarity=0.133  Sum_probs=123.3

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCC----------------------------ce-eeeeecCCCCeEEEeecccCCCCc
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFP----------------------------SV-LDLKCSPVEPIFVSAAASRRYGSS  263 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~----------------------------~v-~~~~~~~~~~~~~~~~~~~~~~~~  263 (458)
                      .|.|.-+|.++|+.+..+.......                            .+ ..+++.+....+..+..+......
T Consensus       177 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             cceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccc
Confidence            3679999999999987765432110                            11 124566666666554432210000


Q ss_pred             cee----e--ccceeEEEEECCCCceeEEeecCCCCC-------cEEEEEEccCC---CEEEEEecCCeEEEEeCCCCce
Q 012699          264 NIY----S--WGFASLTVWNMKTWKAMTVLPLGEDPP-------AITSLCFNHNG---KILAASAVDGMIHMFDMSAGLQ  327 (458)
Q Consensus       264 ~~~----~--~~~g~i~i~d~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~  327 (458)
                      ...    +  .-...|.-.|+++++....++...|..       ...-..+..++   +.++.+..+|.++++|..++++
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence            000    0  002477888999999888776544421       11222222344   3667788899999999999987


Q ss_pred             eeeeeCCCC------------------------------------CeEEEEEcCCCCEEEEecC----------------
Q 012699          328 ITGWPAHDS------------------------------------AISSILFGPDETSIFSLGS----------------  355 (458)
Q Consensus       328 ~~~~~~~~~------------------------------------~v~~~~~~~~~~~l~~~~~----------------  355 (458)
                      +...+.-..                                    .-...+++|+...++....                
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            654321100                                    0013456666655554332                


Q ss_pred             --------------------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          356 --------------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       356 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                                          .|.+.-||+.+++..-..... .         ....-.++-.|.++++++.||.++.+|.
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~---------~~~gg~l~TagglVF~G~~dg~l~A~Da  486 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-T---------HWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-S---------SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-C---------CCCCceeEECCCEEEEECCCCcEEEEEC
Confidence                                245667777765433222111 1         0111123345678888999999999999


Q ss_pred             cCCCcccccCC---CCCcEEEEEECCCCC-eEEE
Q 012699          416 RGHASGMRTLP---HGAAITTVDWHPTLP-MFLT  445 (458)
Q Consensus       416 ~~~~~~~~~~~---h~~~v~~~~~~~~~~-~l~s  445 (458)
                      ++++.+.++.-   ..+..  +.|..+|+ +|+.
T Consensus       487 ~tGe~LW~~~l~~~~~~~P--~ty~~dGkqyv~v  518 (560)
T d1kv9a2         487 DKGEALWQFEAQSGIVAAP--MTFELAGRQYVAI  518 (560)
T ss_dssp             TTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             CCCcEeEEEECCCCccccC--EEEEECCEEEEEE
Confidence            99988866551   22222  34556786 4443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.68  E-value=0.012  Score=53.78  Aligned_cols=202  Identities=11%  Similarity=0.023  Sum_probs=108.9

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCcccc--------ccCCCc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNAT--------IYCGTE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN  231 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  231 (458)
                      .|+.++.++.|.-+|.++++.+-....        ...... -..+...   ...++.++.|+.+.-.|..+|+.+....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE---CCcEEEEecccceeeeccccccceeccc
Confidence            455556667777677666654321110        000011 1122332   3357778889999999999999876554


Q ss_pred             CCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC---------------
Q 012699          232 TTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP---------------  294 (458)
Q Consensus       232 ~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~---------------  294 (458)
                      .......-..+.-.|  .+..++.+.....       ....|.|.-+|.++++.+..+.......               
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~-------~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t  228 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAE-------YGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTT-------TCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             CccCCcceEEeecceEEEeccEEEeecccc-------ccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccc
Confidence            332211111111111  1233344332211       1223799999999999988764321110               


Q ss_pred             --------------cE-EEEEEccCCCEEEEEec-------------------CCeEEEEeCCCCceeeeeeCCCC----
Q 012699          295 --------------AI-TSLCFNHNGKILAASAV-------------------DGMIHMFDMSAGLQITGWPAHDS----  336 (458)
Q Consensus       295 --------------~i-~~~~~~~~~~~l~~~~~-------------------dg~i~v~d~~~~~~~~~~~~~~~----  336 (458)
                                    .+ ...++.++...++.+..                   ...|.-.|+++++....++....    
T Consensus       229 ~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd  308 (573)
T d1kb0a2         229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (573)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             cCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccc
Confidence                          01 23566676666665432                   12577788888887665543221    


Q ss_pred             -----CeEEEEEcCCC---CEEEEecCCCeEEEEeccCCCeeEE
Q 012699          337 -----AISSILFGPDE---TSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       337 -----~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                           +........++   ..++.++.+|.+..+|..+++....
T Consensus       309 ~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~  352 (573)
T d1kb0a2         309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (573)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             ccccceeeecceecCCCceeeeeeccccceeEEecccccccccc
Confidence                 12222222233   4677888899999999988766543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.59  E-value=0.026  Score=51.60  Aligned_cols=57  Identities=12%  Similarity=0.003  Sum_probs=37.2

Q ss_pred             CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699          315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW  372 (458)
Q Consensus       315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  372 (458)
                      |.|.-||+.+++.+.+... ..+..+=.++..+.+++.|+.||.++.+|.++++.+-.
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~  509 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK  509 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeE
Confidence            4677778888777655432 12222112223566888899999999999998766543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.57  E-value=0.027  Score=51.32  Aligned_cols=216  Identities=12%  Similarity=0.105  Sum_probs=117.7

Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCC-----------------------------ce-eeeeecCCCCeEEEeecccCCCC
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFP-----------------------------SV-LDLKCSPVEPIFVSAAASRRYGS  262 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~-----------------------------~v-~~~~~~~~~~~~~~~~~~~~~~~  262 (458)
                      .|.|+.+|.++|+.+..+.......                             .+ ...++.+....+...........
T Consensus       189 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~  268 (573)
T d1kb0a2         189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (573)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             cceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCcccc
Confidence            4689999999999887654332110                             11 12445555555544332211000


Q ss_pred             cce------eeccceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCC---CEEEEEecCCeEEEEeCCCCc
Q 012699          263 SNI------YSWGFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNG---KILAASAVDGMIHMFDMSAGL  326 (458)
Q Consensus       263 ~~~------~~~~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~  326 (458)
                      ...      ...-...|.-.|+++++....++...|.       .+........++   ..++.++.+|.++++|..+++
T Consensus       269 ~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe  348 (573)
T d1kb0a2         269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (573)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             ccccccccccccccceEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence            000      0011236777888888888776543331       112222223333   367778889999999999998


Q ss_pred             eeeeeeCCCC-----------------------------------CeEEEEEcCCCCEEEEecCCC--------------
Q 012699          327 QITGWPAHDS-----------------------------------AISSILFGPDETSIFSLGSDG--------------  357 (458)
Q Consensus       327 ~~~~~~~~~~-----------------------------------~v~~~~~~~~~~~l~~~~~dg--------------  357 (458)
                      .+...+....                                   .-..++++|+...++....+.              
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~  428 (573)
T d1kb0a2         349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (573)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             ccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc
Confidence            7654331110                                   011246677666666544333              


Q ss_pred             -----------------------------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699          358 -----------------------------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV  408 (458)
Q Consensus       358 -----------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  408 (458)
                                                   .+.-||+.+++ ..|......         ....=.++-.|.++++|+.|+
T Consensus       429 ~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk-~~W~~~~~~---------p~~gg~lstagglVF~G~~dg  498 (573)
T d1kb0a2         429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK-AAWSVEHVS---------PWNGGTLTTAGNVVFQGTADG  498 (573)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE-EEEEEEESS---------SCCCCEEEETTTEEEEECTTS
T ss_pred             CCCCccccccccccccccccCCCCCCCcccEEEeCCCCCc-eEeeecCCC---------CCCCceEEEcCCEEEEECCCC
Confidence                                         34445554432 222211110         001112334677888899999


Q ss_pred             cEEEEEccCCCcccccC---C-CCCcEEEEEECCCCC
Q 012699          409 RAPIYQVRGHASGMRTL---P-HGAAITTVDWHPTLP  441 (458)
Q Consensus       409 ~i~i~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~~  441 (458)
                      .++.+|.++++.+..+.   + +..+   +.|..+|+
T Consensus       499 ~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         499 RLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             eEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            99999999998886655   1 2233   34555787

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.016  Score=46.93  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=129.1

Q ss_pred             CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc---eeEEeecC
Q 012699          214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK---AMTVLPLG  290 (458)
Q Consensus       214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~---~~~~~~~~  290 (458)
                      ..|+..++++......+..   ...+..+.|.+..+.+.-.....            +.|.-.++....   ....+. .
T Consensus        10 ~~I~~~~l~~~~~~~~~~~---~~~~~~id~d~~~~~lYw~D~~~------------~~I~~~~l~~~~~~~~~~~~~-~   73 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI-S   73 (266)
T ss_dssp             SSEEEEETTSCCCEEEECS---CSSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEE-C
T ss_pred             CeEEEEECCCCcceeeeCC---CCceEEEEEEeCCCEEEEEECCC------------CEEEEEEecCCCCCcceEEEE-e
Confidence            3588889887665443332   24577899998888777655433            366666654321   111221 2


Q ss_pred             CCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCC
Q 012699          291 EDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQ  367 (458)
Q Consensus       291 ~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~  367 (458)
                      .....+..+++.+.++.|+.. ...+.|.+.++........+.........++++|...+|+...  ..+.|.-.++...
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs  153 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC
Confidence            223446788998866666655 4467899999987665555555566789999998655655443  3445666666543


Q ss_pred             CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEE
Q 012699          368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFL  444 (458)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~  444 (458)
                      .......         ..-..+..+++++.++.|+.+.. .+.|...++.+........  .......++++. .+.++.
T Consensus       154 ~~~~l~~---------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~  223 (266)
T d1ijqa1         154 DIYSLVT---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW  223 (266)
T ss_dssp             CEEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred             ceecccc---------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEE
Confidence            2221110         12234688999998888887754 5789988987764322222  223456677776 344444


Q ss_pred             EecCCCcEEEEe
Q 012699          445 TGSADHSVQVMS  456 (458)
Q Consensus       445 s~~~dg~v~iw~  456 (458)
                      +-..++.|...+
T Consensus       224 td~~~~~I~~~~  235 (266)
T d1ijqa1         224 TDIINEAIFSAN  235 (266)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EECCCCeEEEEE
Confidence            444556665544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.44  E-value=0.04  Score=49.96  Aligned_cols=200  Identities=13%  Similarity=0.054  Sum_probs=111.8

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCcccc---------ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc
Q 012699          161 NIASASVDGTVRIWTYDSSTPASRNAT---------IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN  231 (458)
Q Consensus       161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  231 (458)
                      .|+.++.++.|.-.|.++++.+-+...         ......-..++..   +..++.+..++.|.-.|..+++.+....
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee---CCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            455556667777677776655432110         0001111122222   3468888899999999999999887765


Q ss_pred             CCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC---------------
Q 012699          232 TTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP---------------  294 (458)
Q Consensus       232 ~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~---------------  294 (458)
                      ....... ..+.-.|  ....++.+....       .....|.|.-+|.++++.+..+.......               
T Consensus       145 ~~~~~~~-~~~~~~p~v~~~~vivg~~~~-------~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~  216 (560)
T d1kv9a2         145 TTDPAKP-YSITGAPRVVKGKVIIGNGGA-------EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT  216 (560)
T ss_dssp             CSCTTSS-CBCCSCCEEETTEEEECCBCT-------TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             ccCcccc-eeeeeeeeeecCcccccccce-------eccccceEEEEECCCceEEeeeeeccccccCCcccccccccccc
Confidence            4432111 1111111  122233332211       11223689999999999998875421110               


Q ss_pred             --------------cEEEEEEccCCCEEEEEec-------------------CCeEEEEeCCCCceeeeeeCCCCCeE--
Q 012699          295 --------------AITSLCFNHNGKILAASAV-------------------DGMIHMFDMSAGLQITGWPAHDSAIS--  339 (458)
Q Consensus       295 --------------~i~~~~~~~~~~~l~~~~~-------------------dg~i~v~d~~~~~~~~~~~~~~~~v~--  339 (458)
                                    .-..+++.+...+++.+..                   ...|.-.|+++++.+..++.....+.  
T Consensus       217 ~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~  296 (560)
T d1kv9a2         217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF  296 (560)
T ss_dssp             CCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             ccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccc
Confidence                          1122566777777665432                   23577789999988776654322221  


Q ss_pred             -------EEEEcCCC---CEEEEecCCCeEEEEeccCCCeeE
Q 012699          340 -------SILFGPDE---TSIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       340 -------~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                             -+....++   +.++.++.+|.+.++|..+++.+.
T Consensus       297 d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~  338 (560)
T d1kv9a2         297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (560)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             cccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccc
Confidence                   12222233   357778889999999998876543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.35  E-value=0.051  Score=49.31  Aligned_cols=160  Identities=8%  Similarity=0.062  Sum_probs=94.9

Q ss_pred             CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC--CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699          204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF--PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW  281 (458)
Q Consensus       204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~  281 (458)
                      +..++.++.||.+.-.|.++|+...........  ..++..-.-.++..++..+.. .       ....|.|.-+|++++
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~-~-------~~~~G~v~a~D~~TG  186 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGA-E-------LGVRGAVNAFDLKTG  186 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCG-G-------GTCCCEEEEEETTTC
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccc-c-------ccccCcEEEEECCCC
Confidence            345778889999999999999987665432210  111111111223333322211 1       012368999999999


Q ss_pred             ceeEEeecCCCC-----------------------------------CcE-EEEEEccCCCEEEEEec------------
Q 012699          282 KAMTVLPLGEDP-----------------------------------PAI-TSLCFNHNGKILAASAV------------  313 (458)
Q Consensus       282 ~~~~~~~~~~~~-----------------------------------~~i-~~~~~~~~~~~l~~~~~------------  313 (458)
                      +.+..+......                                   ..+ ...++++....++.+..            
T Consensus       187 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g  266 (571)
T d2ad6a1         187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred             cEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccc
Confidence            998876532110                                   011 23566777777766544            


Q ss_pred             ----CCeEEEEeCCCCceeeeeeCCCCCe---------EEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeE
Q 012699          314 ----DGMIHMFDMSAGLQITGWPAHDSAI---------SSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVL  371 (458)
Q Consensus       314 ----dg~i~v~d~~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~  371 (458)
                          ...+.-.|+++++.+..++.....+         .......+++   .++..+.+|.+.++|..+++.+.
T Consensus       267 ~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence                2467888999999887776432221         1122222443   46788889999999998876553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.71  E-value=0.1  Score=41.85  Aligned_cols=199  Identities=11%  Similarity=0.152  Sum_probs=118.0

Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeecc
Q 012699          153 CRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLN  231 (458)
Q Consensus       153 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~  231 (458)
                      .-.+|..+.||-=+ ..++.++|+++.+.+.   ......+|.--.|-  +.+.|+..+. ..|+-|+++.. .+.+.+.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klk---s~~~~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s~P~k~fd  140 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMK---AHTMTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFD  140 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEE---EEECSSCCCEEEES--SSSEEEEECS-SEEEEEESSSSCCCEEEEE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhc---eEEcCCCcEEEEec--CCCEEEEEcC-CceEEEcccCCCCchhhhh
Confidence            34567777766544 5689999999876543   34445677778886  4455555554 47999999643 2444343


Q ss_pred             CCCC--CCceeeeeecCCCCeEEEeecccCCCCccee-------------------------------------------
Q 012699          232 TTDA--FPSVLDLKCSPVEPIFVSAAASRRYGSSNIY-------------------------------------------  266 (458)
Q Consensus       232 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  266 (458)
                      .+..  ...|..-..+++.++++..+-....+.  +.                                           
T Consensus       141 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~--i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         141 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR--VVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE--EEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hcccccCceEEEEEECCCCCEEEEEeEecCCCc--eeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            3321  245777888888888776654332111  11                                           


Q ss_pred             eccceeEEEEECCCCc---e---eE--Eeec--CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699          267 SWGFASLTVWNMKTWK---A---MT--VLPL--GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS  336 (458)
Q Consensus       267 ~~~~g~i~i~d~~~~~---~---~~--~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  336 (458)
                      ....+.+++.++....   .   .+  .+.+  +...+-..++..++.-..++.-+.-|.|++||++++.++..-+-...
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~  298 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE  298 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC
Confidence            0111334444332210   0   00  0000  11123345666777667888888999999999999999988777777


Q ss_pred             CeEEEEEcCCCCEEEEecCCCeEE
Q 012699          337 AISSILFGPDETSIFSLGSDGKII  360 (458)
Q Consensus       337 ~v~~~~~~~~~~~l~~~~~dg~i~  360 (458)
                      +|...+-..+..-++....+|.|.
T Consensus       299 ~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         299 TIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ceEEeccCCCCceEEEECCCCeEE
Confidence            777555555444455555666553

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.14  Score=43.15  Aligned_cols=183  Identities=11%  Similarity=0.103  Sum_probs=110.1

Q ss_pred             CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-----------CceeEEeecCCCCCcEEEEEEccCC
Q 012699          237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-----------WKAMTVLPLGEDPPAITSLCFNHNG  305 (458)
Q Consensus       237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~  305 (458)
                      ....-+++++...++++++.+              .+.+..++.           .........    ..|..++|+.+ 
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~--------------~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d-   97 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS--------------KAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD-   97 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT--------------EEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT-
T ss_pred             cccceEEEeCCCCEEEEECCC--------------EEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC-
Confidence            456678888888888887776              666665321           112222222    25888999754 


Q ss_pred             CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699          306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS  385 (458)
Q Consensus       306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (458)
                       .|++. .++.+..++...-........-..++.++.++|.  .++....++.+.++++.+.+..........+    ..
T Consensus        98 -~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~----~~  169 (381)
T d1xipa_          98 -QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSF----DV  169 (381)
T ss_dssp             -EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEE----EE
T ss_pred             -EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceE----Ee
Confidence             45554 4567888888765555554555677888988875  5666677899999999876532211110000    11


Q ss_pred             CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe
Q 012699          386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG  446 (458)
Q Consensus       386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  446 (458)
                      ...+.+++|++.|+.++++.+++.-.--++.....+.........|.++.|-.+..++++-
T Consensus       170 ~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         170 TNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             CSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            2457888999999888887544321111222221111112345678999998776666543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.64  E-value=0.23  Score=45.03  Aligned_cols=160  Identities=11%  Similarity=0.107  Sum_probs=92.1

Q ss_pred             eeEEEEECCCCceeEEeecCCCCCc---------EEEEEEccCC---CEEEEEecCCeEEEEeCCCCceeeeeeCCCC--
Q 012699          271 ASLTVWNMKTWKAMTVLPLGEDPPA---------ITSLCFNHNG---KILAASAVDGMIHMFDMSAGLQITGWPAHDS--  336 (458)
Q Consensus       271 g~i~i~d~~~~~~~~~~~~~~~~~~---------i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--  336 (458)
                      ..+.-.|.++++....++...|.-.         +..+... ++   ..++.++.++.++++|..+++.+...+....  
T Consensus       291 ~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~  369 (582)
T d1flga_         291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceeEEecccchhhhhcccccccccccccccccccccccccc-cccccceeEeecccccEEeecccCCcccccccccCccc
Confidence            3677889999998888876554221         1122222 33   2566678889999999888876543211100  


Q ss_pred             -------------------------------------------CeEEEEEcCCCCEEEEecC------------------
Q 012699          337 -------------------------------------------AISSILFGPDETSIFSLGS------------------  355 (458)
Q Consensus       337 -------------------------------------------~v~~~~~~~~~~~l~~~~~------------------  355 (458)
                                                                 .-...+++|+...++....                  
T Consensus       370 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~  449 (582)
T d1flga_         370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             cccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccccccccccccccccc
Confidence                                                       0112344554444433222                  


Q ss_pred             ---------------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699          356 ---------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS  420 (458)
Q Consensus       356 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~  420 (458)
                                     .|.+.-+|+.+++.. |......         +...-.++..|.++++|+.|+.++.+|.++++.
T Consensus       450 ~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~-W~~~~~~---------p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-WEHKEHL---------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEE-EEEEESS---------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccCccccccccCCCCeEEEEcCCCCcEE-eecCCCC---------CCccceeEEcCCeEEEeCCCCeEEEEECCCCcE
Confidence                           245666777765433 3322111         111112345777888899999999999999988


Q ss_pred             ccccC----CCCCcEEEEEECCCCC-eEE
Q 012699          421 GMRTL----PHGAAITTVDWHPTLP-MFL  444 (458)
Q Consensus       421 ~~~~~----~h~~~v~~~~~~~~~~-~l~  444 (458)
                      +.++.    .+..+   +.|..+|+ +++
T Consensus       520 LW~~~~~~~~~~~P---~ty~~~G~qYv~  545 (582)
T d1flga_         520 LWKFQTGSGIVSPP---ITWEQDGEQYLG  545 (582)
T ss_dssp             EEEEECSSCCCSCC---EEEEETTEEEEE
T ss_pred             eEEEECCCCccccC---EEEEECCEEEEE
Confidence            86665    12233   46667886 444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.59  E-value=0.076  Score=46.50  Aligned_cols=112  Identities=15%  Similarity=0.180  Sum_probs=62.1

Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee--eee------CCCCCeEEEEEcCC---CCEEEEecC-------
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT--GWP------AHDSAISSILFGPD---ETSIFSLGS-------  355 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~------~~~~~v~~~~~~~~---~~~l~~~~~-------  355 (458)
                      ....+|+|.|++++|++--..|.|++++..+++...  .+.      .-......|+|+|+   ..+++....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            356899999999988775457999999987765422  111      12356789999994   334443211       


Q ss_pred             C----C--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699          356 D----G--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS  405 (458)
Q Consensus       356 d----g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  405 (458)
                      +    .  .+..+...................+....+....+.|.|||.+.++.+
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence            1    1  133344333222111100000001112334567899999998766554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.13  Score=41.57  Aligned_cols=224  Identities=10%  Similarity=0.035  Sum_probs=96.5

Q ss_pred             cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699          215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP  294 (458)
Q Consensus       215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~  294 (458)
                      .+.+||+.+++-...-..+..  +-......-++.+++.++........    .....+.+||..+.+....-.+.....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~--R~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~~~~yd~~~~~w~~~~~~p~~r~   93 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVP--RSGLAGCVVGGLLYAVGGRNNSPDGN----TDSSALDCYNPMTNQWSPCAPMSVPRN   93 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSC--CBSCEEEEETTEEEEECCEEEETTEE----EECCCEEEEETTTTEEEECCCCSSCCB
T ss_pred             eEEEEECCCCeEEECCCCCCc--cceeEEEEECCEEEEEeCcccCCCCc----cccchhhhcccccccccccccccceec
Confidence            678999998875443222211  11111222255666666643211100    011377889988755544322211111


Q ss_pred             cEEEEEEccCCCEEEEEecCCe-----EEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCC-----CeEEEE
Q 012699          295 AITSLCFNHNGKILAASAVDGM-----IHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSD-----GKIIEW  362 (458)
Q Consensus       295 ~i~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw  362 (458)
                      ...+..+  +++.++.++.++.     ...+|..+......-.  ........+..  ++..++.++.+     ..+..|
T Consensus        94 ~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~~GG~~~~~~~~~~~~~  169 (288)
T d1zgka1          94 RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECY  169 (288)
T ss_dssp             TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEE
T ss_pred             ceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee--eecceEecCcccccccceEEEe
Confidence            1222222  5666666554433     4456665543322111  11111222222  34455555543     346777


Q ss_pred             eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCCcccccC-CCCCcEEEEEE
Q 012699          363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHASGMRTL-PHGAAITTVDW  436 (458)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~  436 (458)
                      |..+..-....    ..    ......... .-.+++.++.++.+     .....++..+........ .....-.+++.
T Consensus       170 d~~~~~~~~~~----~~----~~~~~~~~~-~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~  240 (288)
T d1zgka1         170 YPERNEWRMIT----AM----NTIRSGAGV-CVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV  240 (288)
T ss_dssp             ETTTTEEEECC----CC----SSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ecccccccccc----cc----ccccccccc-cceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE
Confidence            77654222110    00    001111122 22345566665543     356777766543211111 11111112222


Q ss_pred             CCCCCeEEEecCCCc-----EEEEeCC
Q 012699          437 HPTLPMFLTGSADHS-----VQVMSLS  458 (458)
Q Consensus       437 ~~~~~~l~s~~~dg~-----v~iw~l~  458 (458)
                       .++++++.||.++.     |.+||++
T Consensus       241 -~~~~l~v~GG~~~~~~~~~v~~yd~~  266 (288)
T d1zgka1         241 -HQGRIYVLGGYDGHTFLDSVECYDPD  266 (288)
T ss_dssp             -ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             -ECCEEEEEecCCCCeecceEEEEECC
Confidence             36788888876543     6777763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.35  Score=43.75  Aligned_cols=159  Identities=14%  Similarity=0.040  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC--cee-e-eeec--CCCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699          205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP--SVL-D-LKCS--PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~v~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      ..++.++.++.+.-.|.++++.+.......+..  ... . ....  .....++..+....      .....+.|.-+|.
T Consensus       118 ~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~------~~~~~g~v~a~d~  191 (582)
T d1flga_         118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGD------EFGVVGRLFARDP  191 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCG------GGCCBCEEEEECT
T ss_pred             CceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCcccc------ccccccceEEecC
Confidence            457778889999999999998875443322100  000 0 0000  01222222211100      0112257888999


Q ss_pred             CCCceeEEeecCCC---------------------------------------CCcEEEEEEccCCCEEEEEec------
Q 012699          279 KTWKAMTVLPLGED---------------------------------------PPAITSLCFNHNGKILAASAV------  313 (458)
Q Consensus       279 ~~~~~~~~~~~~~~---------------------------------------~~~i~~~~~~~~~~~l~~~~~------  313 (458)
                      ++++.+..+.....                                       ...-..+++.+...+++.+..      
T Consensus       192 ~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~  271 (582)
T d1flga_         192 DTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWN  271 (582)
T ss_dssp             TTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSC
T ss_pred             CCCcEEEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCccccc
Confidence            99988876643211                                       001123667777777776541      


Q ss_pred             ------------------CCeEEEEeCCCCceeeeeeCCCC----------Ce-EEEEEcCCC---CEEEEecCCCeEEE
Q 012699          314 ------------------DGMIHMFDMSAGLQITGWPAHDS----------AI-SSILFGPDE---TSIFSLGSDGKIIE  361 (458)
Q Consensus       314 ------------------dg~i~v~d~~~~~~~~~~~~~~~----------~v-~~~~~~~~~---~~l~~~~~dg~i~i  361 (458)
                                        ...+.-.|+++++....++....          ++ ..+... ++   ..++..+.++.+.+
T Consensus       272 ~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~v  350 (582)
T d1flga_         272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYV  350 (582)
T ss_dssp             GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEE
T ss_pred             ccccccCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccc-cccccceeEeecccccEEe
Confidence                              13577788888888766653221          11 112222 33   24666778888999


Q ss_pred             EeccCCCee
Q 012699          362 WSLQNQGQV  370 (458)
Q Consensus       362 wd~~~~~~~  370 (458)
                      .|..+++..
T Consensus       351 ldr~tG~~i  359 (582)
T d1flga_         351 VDRSNGKLQ  359 (582)
T ss_dssp             EETTTCCEE
T ss_pred             ecccCCccc
Confidence            998876543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.31  E-value=0.29  Score=42.39  Aligned_cols=237  Identities=11%  Similarity=0.059  Sum_probs=121.0

Q ss_pred             eEEEEEecCCCeEEE-EEcCCC----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcc---e
Q 012699          194 IMSLEWECKSDRLLL-IGTADG----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN---I  265 (458)
Q Consensus       194 v~~~~~~~~~~~~l~-~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~  265 (458)
                      +...+++ +++++++ +-+.+|    .++++|+.+++.+...-..   .....+.|.+++..++....+.......   .
T Consensus       127 ~~~~~~S-pd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~---~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         127 LRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ecceEec-CCCCEEEEEeccccCchheeEEeccCcceeccccccc---ccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            3455677 4555555 433333    7999999999876422111   1224688999999887665443211110   0


Q ss_pred             eeccceeEEEEECCCCceeEEeecC--CCCCcEEEEEEccCCCEEEEEec---CCe--EEEEeCCCCce--------eee
Q 012699          266 YSWGFASLTVWNMKTWKAMTVLPLG--EDPPAITSLCFNHNGKILAASAV---DGM--IHMFDMSAGLQ--------ITG  330 (458)
Q Consensus       266 ~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~---dg~--i~v~d~~~~~~--------~~~  330 (458)
                      .......+..+.+.+......+-..  .....+..+..++++++++....   +..  +.+.|+.....        ...
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence            1111137888888776544333222  23345677888999998875433   223  44555543211        112


Q ss_pred             eeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-C
Q 012699          331 WPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-G  406 (458)
Q Consensus       331 ~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~  406 (458)
                      .........-+. +.++.+++...   .++.|...++.+.....+.    .+.  ..+...+..-.++..+.+|+..- .
T Consensus       283 ~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~----~vi--~~~~~~~~~~~~~~~~~~lvl~~~~  355 (430)
T d1qfma1         283 IDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK----VLV--PEHEKDVLEWVACVRSNFLVLCYLH  355 (430)
T ss_dssp             ECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCE----EEE--CCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred             ecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccce----EEe--cccCcceeeeEEEEECCEEEEEEEc
Confidence            222222333222 22232333222   2456666676654321111    000  11223344444555555666554 4


Q ss_pred             C--ccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699          407 S--VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP  441 (458)
Q Consensus       407 ~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  441 (458)
                      +  .+|+++++.++..........+.|..+...++..
T Consensus       356 ~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             CCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence            4  4688999987755443344446666666666655

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.22  E-value=0.26  Score=41.02  Aligned_cols=190  Identities=9%  Similarity=0.125  Sum_probs=107.4

Q ss_pred             CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc------CCCEEEEEec--C--C
Q 012699          246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH------NGKILAASAV--D--G  315 (458)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~--d--g  315 (458)
                      |...+++.+...             +.|.+||+. ++.+..+..    +.++.+..-.      ....+++++.  +  .
T Consensus        38 p~~SlI~gTdK~-------------~Gl~vYdL~-G~~l~~~~~----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~   99 (353)
T d1h6la_          38 PQNSKLITTNKK-------------SGLAVYSLE-GKMLHSYHT----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN   99 (353)
T ss_dssp             GGGCEEEEEETT-------------SCCEEEETT-CCEEEECCS----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTC
T ss_pred             cCccEEEEEcCc-------------CCEEEEcCC-CcEEEeccc----CCcCccccccccccCCcceEEEEEeCCcCcce
Confidence            445566666554             479999986 677666542    3466665442      2223455542  2  2


Q ss_pred             eEEEEeCCC-CceeeeeeCC-------CCCeEEEEE--cCC-CC-EEEEecCCCeEEEEeccCCCee-EEeecCCcccCC
Q 012699          316 MIHMFDMSA-GLQITGWPAH-------DSAISSILF--GPD-ET-SIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCDP  382 (458)
Q Consensus       316 ~i~v~d~~~-~~~~~~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~  382 (458)
                      .|.+|.+.. ...+..+...       ...+..+++  +|. +. +++....+|.+..|.+...+.. ........+   
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f---  176 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF---  176 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE---
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc---
Confidence            577787752 2233333221       124566666  664 44 5666777999999987533211 100000011   


Q ss_pred             CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-cc----cC--CCCCcEEEEEEC--CCCC--eEEEecCCCc
Q 012699          383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-MR----TL--PHGAAITTVDWH--PTLP--MFLTGSADHS  451 (458)
Q Consensus       383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-~~----~~--~h~~~v~~~~~~--~~~~--~l~s~~~dg~  451 (458)
                       .....+-.+.+++..+.|+++-++..++.++.+-.... ..    ..  ...+-+-.++.-  +++.  +|+|.-.|.+
T Consensus       177 -~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~  255 (353)
T d1h6la_         177 -KMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS  255 (353)
T ss_dssp             -ECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             -CCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence             22346788999999999999988877776666422111 11    11  134567777653  3333  5666667788


Q ss_pred             EEEEeC
Q 012699          452 VQVMSL  457 (458)
Q Consensus       452 v~iw~l  457 (458)
                      ..||+.
T Consensus       256 f~vydr  261 (353)
T d1h6la_         256 YAIYER  261 (353)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            999874

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.82  E-value=0.41  Score=39.81  Aligned_cols=197  Identities=13%  Similarity=0.175  Sum_probs=102.5

Q ss_pred             EEEeCCCCCEEEEEeC------------CCcEEEEecCCCCCCCccccccCC------CceEEEEEec-CCCe-EEEEE-
Q 012699          152 CCRFSSSGNNIASASV------------DGTVRIWTYDSSTPASRNATIYCG------TEIMSLEWEC-KSDR-LLLIG-  210 (458)
Q Consensus       152 ~~~~~~~~~~l~s~~~------------dg~v~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~-~~~~-~l~~~-  210 (458)
                      .+...|+|..+++++.            .|.+.++|+.+.............      -....+.... .++. +|++. 
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            5677788776666542            488999998765543221111111      1223444321 2333 44444 


Q ss_pred             --cCCCcEEEEEcCCCc--e--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCC--Cc--ceeeccceeEEEEECCC
Q 012699          211 --TADGGIKAWNVDAKR--V--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG--SS--NIYSWGFASLTVWNMKT  280 (458)
Q Consensus       211 --~~dg~i~~wd~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~g~i~i~d~~~  280 (458)
                        ....+|.++++....  .  +.++... ......++....++..+++-.......  ..  .+.....|.+.-||...
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~-~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCc-cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence              245678888875433  1  1222222 224578899989998877742211100  00  01112234555565543


Q ss_pred             CceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeee--eCCCCCeEEEEEcCCCCEEEEec
Q 012699          281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGW--PAHDSAISSILFGPDETSIFSLG  354 (458)
Q Consensus       281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~  354 (458)
                      .+  ....   .-...+.++++|++++|+++. ..+.|++|++.....+...  ..-.+..-.+.+.+++..+..++
T Consensus       198 ~~--~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VR--VVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EE--EEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eE--EEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            22  2221   123478999999998876654 4678999998754322211  11234456777766433344443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.61  E-value=0.6  Score=40.28  Aligned_cols=247  Identities=7%  Similarity=-0.024  Sum_probs=123.1

Q ss_pred             eEEEEeCCCCCEEEEE-eCC----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC------------
Q 012699          150 ISCCRFSSSGNNIASA-SVD----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA------------  212 (458)
Q Consensus       150 v~~~~~~~~~~~l~s~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------  212 (458)
                      +...+++|+++++|.+ +.+    .++++.|+.+++.+...  +. ......++|.+.+..++++.-.            
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--LE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--EE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--cc-cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            4456789999998743 333    36999999998754311  11 1122467898444444444321            


Q ss_pred             ---CCcEEEEEcCCCcee--eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce----
Q 012699          213 ---DGGIKAWNVDAKRVV--CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA----  283 (458)
Q Consensus       213 ---dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~----  283 (458)
                         ...+..+.+.+....  ..+...........+..++++++++..........        ..+.+.|+.....    
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~--------~~~~~~d~~~~~~~~~~  275 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV--------NRLWYCDLQQESNGITG  275 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC--------CEEEEEEGGGSSSSSCS
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCcc--------EEEEEeeCCCccccccc
Confidence               125777777665322  22333222234666778889888765433211000        1344445443211    


Q ss_pred             ----eEEeecCCCCCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          284 ----MTVLPLGEDPPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       284 ----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                          ...+  ........-+ .+.++.+++....   ++.|...++.....   ...+..+...+..-.+...+.+|+..
T Consensus       276 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~  352 (430)
T d1qfma1         276 ILKWVKLI--DNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (430)
T ss_dssp             SCCCEEEE--CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             ccceeEee--cccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence                1111  1122222222 2223333333322   46777777765432   22233445555444444445566544


Q ss_pred             c-CCC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC----ccEEEEEccCCC
Q 012699          354 G-SDG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS----VRAPIYQVRGHA  419 (458)
Q Consensus       354 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----~~i~i~~~~~~~  419 (458)
                      . .++  .|+++++.++......         ......+..+...++...+...-.+    .+++-+|+.+++
T Consensus       353 ~~~~~~~~l~v~~~~~~~~~~~~---------~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         353 YLHDVKNTLQLHDLATGALLKIF---------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEE---------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEcCCEeEEEEEECCCCcEEEec---------CCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            3 444  4888988765432211         1122345555555666554433322    678888887764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.53  E-value=0.53  Score=39.08  Aligned_cols=195  Identities=13%  Similarity=0.280  Sum_probs=107.0

Q ss_pred             CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec------CCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699          203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS------PVEPIFVSAAASRRYGSSNIYSWGFASLTVW  276 (458)
Q Consensus       203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~  276 (458)
                      ...+++.....+-|.+||++ |+.+..+..    +.+..+..-      .....++.++.... +        ...|.+|
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~----Gr~NNVDvr~~~~l~~~~~di~vasnR~~-~--------~~~l~~~  104 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT----GKLNNVDIRYDFPLNGKKVDIAAASNRSE-G--------KNTIEIY  104 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCS----SCEEEEEEEEEEEETTEEEEEEEEEECCT-T--------TCEEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEeccc----CCcCccccccccccCCcceEEEEEeCCcC-c--------ceeEEEE
Confidence            34566666777779999986 666665543    344444433      22223444442210 0        0267777


Q ss_pred             ECCC-CceeEEeecCCC-----CCcEEEEEE--ccC-CC-EEEEEecCCeEEEEeCCC---C----ceeeeeeCCCCCeE
Q 012699          277 NMKT-WKAMTVLPLGED-----PPAITSLCF--NHN-GK-ILAASAVDGMIHMFDMSA---G----LQITGWPAHDSAIS  339 (458)
Q Consensus       277 d~~~-~~~~~~~~~~~~-----~~~i~~~~~--~~~-~~-~l~~~~~dg~i~v~d~~~---~----~~~~~~~~~~~~v~  339 (458)
                      .+.. ...+..+.....     ...+..+|+  +|. +. ++++...+|.+..|.+..   +    +.++.+.. ...+.
T Consensus       105 ~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~E  183 (353)
T d1h6la_         105 AIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTE  183 (353)
T ss_dssp             EEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEE
T ss_pred             EecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccc
Confidence            6642 222222221111     123455555  664 44 566777789998887632   2    34455543 45788


Q ss_pred             EEEEcCCCCEEEEecCCCeEEEEeccCCC----eeEEeecCCcccCCCCCCCceeEEEEc--cCCC-EEEEEe-CCccEE
Q 012699          340 SILFGPDETSIFSLGSDGKIIEWSLQNQG----QVLWTRNCSRFCDPESSKSCRHEMALD--VNGR-RLLVTS-GSVRAP  411 (458)
Q Consensus       340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~-~l~~~~-~~~~i~  411 (458)
                      .|++.+....|+.+-.+..+..++.....    ......      ........+-.+++-  ++++ ||++++ ++++..
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~------~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRA------DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEEC------SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecc------cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            99999988899988887766666654221    111110      111234455666643  3333 555544 578899


Q ss_pred             EEEccCC
Q 012699          412 IYQVRGH  418 (458)
Q Consensus       412 i~~~~~~  418 (458)
                      +||..+.
T Consensus       258 vydr~~~  264 (353)
T d1h6la_         258 IYERQGQ  264 (353)
T ss_dssp             EEESSTT
T ss_pred             EEecCCC
Confidence            9998764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.74  Score=38.63  Aligned_cols=182  Identities=8%  Similarity=0.022  Sum_probs=95.7

Q ss_pred             CeEEEEeCCCCCEEEEEeCCCcEEEEecCC-------CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699          149 PISCCRFSSSGNNIASASVDGTVRIWTYDS-------STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV  221 (458)
Q Consensus       149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~  221 (458)
                      ...-++.++...+++.|+.++ ++|-.+..       ............-..|..++|+ .+  .++.. .++.+..++.
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs-~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFH-GD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEE-TT--EEEEE-ESSEEEEEES
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEee-CC--EEEEE-eCCCEEEEEe
Confidence            456788888777888888775 56665321       0000001111112368889997 33  34443 3456788877


Q ss_pred             CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---CCCCCcEEE
Q 012699          222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL---GEDPPAITS  298 (458)
Q Consensus       222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~  298 (458)
                      .+-..........  .++..+.+.|....  ....+             |.+.++++..++.......   -.-...+.+
T Consensus       113 ~~l~~~~~~~~~~--~~~~~~~~~p~~~~--l~~~~-------------~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  175 (381)
T d1xipa_         113 EELSEFRTVTSFE--KPVFQLKNVNNTLV--ILNSV-------------NDLSALDLRTKSTKQLAQNVTSFDVTNSQLA  175 (381)
T ss_dssp             SSTTCEEEEEECS--SCEEEEEECSSEEE--EEETT-------------SEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred             ecccccccccccc--ccccceecCCceeE--EEecC-------------CCEEEEEeccCccccccCCcceEEecCCceE
Confidence            6644332222221  45777777775433  33223             5888888888765433210   001244778


Q ss_pred             EEEccCCCEEEEEecCCeEEEE-eCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699          299 LCFNHNGKILAASAVDGMIHMF-DMSAGLQITGWPAHDSAISSILFGPDETSIFSL  353 (458)
Q Consensus       299 ~~~~~~~~~l~~~~~dg~i~v~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  353 (458)
                      ++|++.|+.++++..++ ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       176 v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         176 VLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            88888887777764322 2211 111111111111234468899998666555544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.47  E-value=0.97  Score=39.15  Aligned_cols=113  Identities=11%  Similarity=0.142  Sum_probs=64.7

Q ss_pred             CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC---CCEEEEEeC-----
Q 012699          335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN---GRRLLVTSG-----  406 (458)
Q Consensus       335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~-----  406 (458)
                      -...++|+|.|++++|++--.+|.|++++..+..... ...................++++|+   ..++++...     
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~-i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee-cccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            3567899999999988877568999999877654332 2222222222334557888999995   344444211     


Q ss_pred             ------Cc--cEEEEEccCCCcc-------cccC--CCCCcEEEEEECCCCCeEEEecC
Q 012699          407 ------SV--RAPIYQVRGHASG-------MRTL--PHGAAITTVDWHPTLPMFLTGSA  448 (458)
Q Consensus       407 ------~~--~i~i~~~~~~~~~-------~~~~--~h~~~v~~~~~~~~~~~l~s~~~  448 (458)
                            .+  .+..+........       ....  ........|.|.|||.++++.++
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                  01  1333333322111       0000  11234578999999997777664

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.22  E-value=1.2  Score=36.56  Aligned_cols=240  Identities=10%  Similarity=0.121  Sum_probs=121.8

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM  278 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~  278 (458)
                      ++...+++-+.+|.|+--++++-+.  ...+....+ ..+.. +..+.....++..+..+.           -.+.+|++
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~~-D~v~~~~~~~t~d~ll~fT~~Grv-----------y~l~v~ei   70 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNY-----------LYCPVHEL   70 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEE-----------EEEEGGGS
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccCC-ceEEEEEEEcCCCEEEEEecCCEE-----------EEEeeccC
Confidence            4677888899999998765542110  001111111 22333 333333333333332110           14444555


Q ss_pred             CC------CceeEEe-ecCCCCCcEEEEEEcc--CCCEEEEEecCCeEEEEeCCCCc------ee--eeeeCCCCCeEEE
Q 012699          279 KT------WKAMTVL-PLGEDPPAITSLCFNH--NGKILAASAVDGMIHMFDMSAGL------QI--TGWPAHDSAISSI  341 (458)
Q Consensus       279 ~~------~~~~~~~-~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~------~~--~~~~~~~~~v~~~  341 (458)
                      ..      |.++..+ .+......+..+...+  ...+|+..+..|.++..++....      ..  ..+ .....+..+
T Consensus        71 P~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L-~~~D~l~~v  149 (323)
T d1wp5a_          71 PDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDV  149 (323)
T ss_dssp             CBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEE
T ss_pred             cccccccccccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccc-cccccccce
Confidence            43      2232222 2222223333344433  35688888999999999874321      11  222 234567777


Q ss_pred             EEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699          342 LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG  421 (458)
Q Consensus       342 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~  421 (458)
                      ....+...++.++..|.+..++...-...-................-+......+++..|++.+..|..+.-.+..-...
T Consensus       150 ~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~  229 (323)
T d1wp5a_         150 HLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKA  229 (323)
T ss_dssp             EEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCC
T ss_pred             eccCCCeEEEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccc
Confidence            77676778888999999999988753221110011111112222222334455667788888999988777665432111


Q ss_pred             ---------cccC-CCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699          422 ---------MRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQV  454 (458)
Q Consensus       422 ---------~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  454 (458)
                               .... .-...|..+....+...|+..+..|.+.-
T Consensus       230 ~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r  272 (323)
T d1wp5a_         230 TRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIET  272 (323)
T ss_dssp             CTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEE
T ss_pred             cccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEE
Confidence                     1111 12234555555555554555555665543

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=93.80  E-value=0.84  Score=33.49  Aligned_cols=143  Identities=8%  Similarity=-0.030  Sum_probs=77.5

Q ss_pred             CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee------eee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc-
Q 012699          294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI------TGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ-  365 (458)
Q Consensus       294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-  365 (458)
                      ..+.-++|||+|.+.++-  .+.++.=.+.+....      ..+ .+-=+...-+-|+|.|-+-++.  ++  .+|.-. 
T Consensus        40 ~n~~~i~fsP~G~LyaVr--~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt--~~--~LYr~~p  113 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVL--NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--KD--KLYKASP  113 (235)
T ss_dssp             TTCSEEEECTTSCEEEEE--TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred             cceeEEEECCCCcEEEEE--CCeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec--Cc--ceecCCc
Confidence            346679999999887774  345665554432211      111 1111234568899999544444  35  445433 


Q ss_pred             -CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-----cc-c-CCCCCcEEEEEEC
Q 012699          366 -NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-----MR-T-LPHGAAITTVDWH  437 (458)
Q Consensus       366 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-----~~-~-~~h~~~v~~~~~~  437 (458)
                       +.+...|......  .....-..+..+-|.|+|.+.++. .+ .++-+.......-     .. + .++-....-+.|+
T Consensus       114 Ptn~~q~W~g~a~~--vG~~gw~df~~lFFdP~G~LYaV~-~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs  189 (235)
T d1tl2a_         114 PQSDTDNWIARATE--VGSGGWSGFKFLFFHPNGYLYAVH-GQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  189 (235)
T ss_dssp             CCSTTCCHHHHSEE--EECSSGGGEEEEEECTTSCEEEEE-TT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             Ccccchhhhhhhhh--hccCCcCceeEEEECCCceEEEEE-CC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEEC
Confidence             2222112111111  111233457789999999988883 33 3665554332211     01 1 1455667789999


Q ss_pred             CCCCeEEEe
Q 012699          438 PTLPMFLTG  446 (458)
Q Consensus       438 ~~~~~l~s~  446 (458)
                      |+|.+..+-
T Consensus       190 ~dG~L~~v~  198 (235)
T d1tl2a_         190 SVGTLFGVQ  198 (235)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEe
Confidence            999976653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.90  E-value=2.1  Score=35.31  Aligned_cols=104  Identities=9%  Similarity=0.003  Sum_probs=58.2

Q ss_pred             CCeEEEEeCCCCCEEEEEe--C-------------CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699          148 SPISCCRFSSSGNNIASAS--V-------------DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA  212 (458)
Q Consensus       148 ~~v~~~~~~~~~~~l~s~~--~-------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  212 (458)
                      ...+.+++..++.+++|-.  .             -++..+|..+.+...   .....-...+.++++|....++++-+.
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~---~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---VVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE---EEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE---EEcCCCCccceeEECCCCCEEEEEeCC
Confidence            4467778777887777731  1             123344444443321   112223457889999555566677777


Q ss_pred             CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC-CCeEEEe
Q 012699          213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV-EPIFVSA  254 (458)
Q Consensus       213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~  254 (458)
                      .+.|++|++.............-...+-.+.+.+. +.+.+.+
T Consensus       227 ~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         227 AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            88999999875543222211111245667888764 4444443

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.23  E-value=2.4  Score=34.53  Aligned_cols=246  Identities=12%  Similarity=0.138  Sum_probs=123.5

Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE---EcCC------Cce
Q 012699          157 SSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW---NVDA------KRV  226 (458)
Q Consensus       157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w---d~~~------~~~  226 (458)
                      |+.+.+++-+.+|.|+--.+.+.+... .......+..+..+... .....|+.-+..|.++.-   ++..      |.+
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~~D~v~~~~~~-~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEM-NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEE-ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccCCceEEEEEEE-cCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            566778888999999865543210000 00112223344444333 334444555566765544   3332      222


Q ss_pred             eeeccCCCCCCceeee-eecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCC------ceeEEeecCCCCCcEE
Q 012699          227 VCDLNTTDAFPSVLDL-KCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW------KAMTVLPLGEDPPAIT  297 (458)
Q Consensus       227 ~~~~~~~~~~~~v~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~------~~~~~~~~~~~~~~i~  297 (458)
                      +..+-.......+..+ ...+  ....++..+.             .|.++...+...      +....+.+.. ...+.
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk-------------~G~iKr~~l~~f~~~~~~~g~~~i~L~~-~D~l~  147 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTR-------------NGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVV  147 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEET-------------TSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEee-------------hhheeeccHHHhhhhhccchhhhccccc-ccccc
Confidence            2222111111222222 2211  2233444433             368888876432      2233344433 34566


Q ss_pred             EEEEccCCCEEEEEecCCeEEEEeCCCCce-------eeeeeC-CCCCeEE-EEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699          298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQ-------ITGWPA-HDSAISS-ILFGPDETSIFSLGSDGKIIEWSLQNQG  368 (458)
Q Consensus       298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~  368 (458)
                      .+....+...++.++..|.+..|+...-..       +.-++- ..+.+.+ ....+++..|++.+..|..+.-.+....
T Consensus       148 ~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~  227 (323)
T d1wp5a_         148 DVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFE  227 (323)
T ss_dssp             EEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred             ceeccCCCeEEEEEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhc
Confidence            777777777888899999999998754222       221221 2334444 3445566788888899988887665432


Q ss_pred             eeEEeecCC-cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699          369 QVLWTRNCS-RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG  417 (458)
Q Consensus       369 ~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~  417 (458)
                      ......... ...........+..+....+...|+..+..|.+.-.++..
T Consensus       228 ~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~~  277 (323)
T d1wp5a_         228 KATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             CCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhhh
Confidence            110000000 0111112233455555666666677777777776665543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=2.6  Score=33.35  Aligned_cols=224  Identities=8%  Similarity=-0.024  Sum_probs=98.2

Q ss_pred             cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---------CCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699          170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---------DGGIKAWNVDAKRVVCDLNTTDAFPSVL  240 (458)
Q Consensus       170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~v~  240 (458)
                      .+.+||+.+.+-.... .......-.+++.  .++.+++.|+.         -..+.+||..+.+....-....  ..-.
T Consensus        20 ~~~~yd~~t~~W~~~~-~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~--~r~~   94 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLA-DLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNR   94 (288)
T ss_dssp             CEEEEETTTTEEEECC-CCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBT
T ss_pred             eEEEEECCCCeEEECC-CCCCccceeEEEE--ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccc--eecc
Confidence            4778888776432211 1111111112222  24566666653         1367788888776554322221  1111


Q ss_pred             eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-----C
Q 012699          241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-----G  315 (458)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g  315 (458)
                      ..+...+++.++.++.+....        ......+|..+............... .++... ++..++.|+.+     .
T Consensus        95 ~~~~~~~~~i~~~gg~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~-~~~~~~~GG~~~~~~~~  164 (288)
T d1zgka1          95 IGVGVIDGHIYAVGGSHGCIH--------HNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLN  164 (288)
T ss_dssp             CEEEEETTEEEEECCEETTEE--------CCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCC
T ss_pred             eeccccceeeEEecceecccc--------cceeeeeccccCcccccccccccccc-ceeeee-eecceEecCcccccccc
Confidence            122223555555554432100        02456677776544332211111111 122222 34455555543     3


Q ss_pred             eEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCce
Q 012699          316 MIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR  389 (458)
Q Consensus       316 ~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  389 (458)
                      .+..||..+.+....-... ...-.++.. .+++.++.++.+     .....+|..+..-..   .. ..    .....-
T Consensus       165 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~---~~-~~----p~~r~~  235 (288)
T d1zgka1         165 SAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTF---VA-PM----KHRRSA  235 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE---CC-CC----SSCCBS
T ss_pred             eEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeec---cc-Cc----cCcccc
Confidence            5788887765432211110 111112222 235556665543     245667766542211   10 00    111111


Q ss_pred             eEEEEccCCCEEEEEeCCc-----cEEEEEccCC
Q 012699          390 HEMALDVNGRRLLVTSGSV-----RAPIYQVRGH  418 (458)
Q Consensus       390 ~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~~  418 (458)
                      ..++ ..++++++.|+.++     .+.+||+.+.
T Consensus       236 ~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         236 LGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CEEE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eEEE-EECCEEEEEecCCCCeecceEEEEECCCC
Confidence            2222 33778888876543     4788888764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.24  E-value=2.7  Score=31.43  Aligned_cols=219  Identities=15%  Similarity=0.140  Sum_probs=116.0

Q ss_pred             CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeee-ecCCCCeEEEe-ecccCCCCcceeeccceeEEEEECC
Q 012699          202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLK-CSPVEPIFVSA-AASRRYGSSNIYSWGFASLTVWNMK  279 (458)
Q Consensus       202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~i~i~d~~  279 (458)
                      .+..+++.+...|.+.++-+..++.+.-.+.+     |.... -.+.-..+... .-.+        +.+...+.+-+++
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtkeP-----I~~~~~Pk~~ldfi~f~RDV~k--------GkE~Hai~~~Nlk   90 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREP-----INSVLDPHYGVGRVILVRDVSK--------GAEQHALFKVNTS   90 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEECCSSC-----CSEECEECTTBSEEEEEEECST--------TSCCEEEEEEETT
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEEeccc-----ccCcCCCccCcceEEEEeehhc--------CcceeeEEEEccC
Confidence            56778899989999999998888766543322     22111 11111111111 1110        0011245555555


Q ss_pred             CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee--eeeeCC-------CCCeEEEEE-cCCCCE
Q 012699          280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI--TGWPAH-------DSAISSILF-GPDETS  349 (458)
Q Consensus       280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~-------~~~v~~~~~-~~~~~~  349 (458)
                      .......+. ...+-.|.+++.. +.+..++|+......+|-++.|+..  ..+++.       ..-|..+.+ .+....
T Consensus        91 ~~GEE~~i~-spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~s  168 (313)
T d2hu7a1          91 RPGEEQRLE-AVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS  168 (313)
T ss_dssp             STTCEEECT-TSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CCCeeeEec-CCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcce
Confidence            322222221 1122456666664 4457788888888888888877543  233221       223334433 333334


Q ss_pred             EEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-c--cEEEEEccCCCcccccC
Q 012699          350 IFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-V--RAPIYQVRGHASGMRTL  425 (458)
Q Consensus       350 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~--~i~i~~~~~~~~~~~~~  425 (458)
                      ++++.. .|.+++++-..+                    .++.....++.+. ++.-+. +  ...-+|+++++-.....
T Consensus       169 fF~adl~SG~lri~tpkeG--------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~  227 (313)
T d2hu7a1         169 LFTSNLSSGGLRVFDSGEG--------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLEL  227 (313)
T ss_dssp             EEEEETTTEEEEEECCSSE--------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCC
T ss_pred             EEEEecccCCEEEecCCCC--------------------cccceeEccCcee-eeccCCCCceEEEEEecccCceeeeec
Confidence            555555 777888776543                    3455666666665 332221 1  12234666443211111


Q ss_pred             C-------CCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699          426 P-------HGAAITTVDWHPTLPMFLTGSADHSVQVMS  456 (458)
Q Consensus       426 ~-------h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~  456 (458)
                      +       ..-.|+-+-+.|++++++.+-.||.=++|.
T Consensus       228 P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         228 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             SSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             CcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            1       123566677999999988898898877764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.55  E-value=3.7  Score=30.69  Aligned_cols=228  Identities=11%  Similarity=0.110  Sum_probs=104.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC-eEEEEE------cCCCcEEEEEcCCCceeeec
Q 012699          158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD-RLLLIG------TADGGIKAWNVDAKRVVCDL  230 (458)
Q Consensus       158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~------~~dg~i~~wd~~~~~~~~~~  230 (458)
                      +.++|+.+...|.+.++-+..++....     ...+|.... .|..+ .++...      -.-..|.+-++........+
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkL-----tkePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i   98 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKL-----NREPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL   98 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEEC-----CSSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEE-----ecccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe
Confidence            344777787889999998877765421     122332221 11111 111111      11123444444422222333


Q ss_pred             cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699          231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA  310 (458)
Q Consensus       231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  310 (458)
                      ..... -+|.++++.. ....++++...             ...+|-++.++..+.....+. +-|+.+    .+++++-
T Consensus        99 ~spk~-vRI~S~~ydd-k~vvF~Gased-------------~~~LYviegGklrkL~~vPpF-sFVtDI----~~d~I~G  158 (313)
T d2hu7a1          99 EAVKP-MRILSGVDTG-EAVVFTGATED-------------RVALYALDGGGLRELARLPGF-GFVSDI----RGDLIAG  158 (313)
T ss_dssp             TTSCS-BEEEEEEECS-SCEEEEEECSS-------------CEEEEEEETTEEEEEEEESSC-EEEEEE----ETTEEEE
T ss_pred             cCCce-EEEEEeeecC-ceEEEecccCC-------------ceEEEEEeCCceeeeccCCCc-ceEEec----cCCeEEE
Confidence            32211 2344444432 23344444432             677777777766555443332 223333    1333321


Q ss_pred             ----EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699          311 ----SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCSRFCDPE  383 (458)
Q Consensus       311 ----~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~  383 (458)
                          ++......+-|+.+|. ++.+...++.++.....++.+. ++.-.   +....-+|+++++-.........+.  .
T Consensus       159 ~g~~~g~~~sfF~adl~SG~-lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~--s  234 (313)
T d2hu7a1         159 LGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFS--S  234 (313)
T ss_dssp             EEEEETTEEEEEEEETTTEE-EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHH--H
T ss_pred             EeeecCCcceEEEEecccCC-EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccce--e
Confidence                1111123333443332 3333444555666666665544 32211   2222345666543221110000000  0


Q ss_pred             CCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699          384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV  415 (458)
Q Consensus       384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~  415 (458)
                      .....+.-+-+.|++++++++-.||+-.++.-
T Consensus       235 y~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         235 YRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence            12234566779999999999999998888863