Citrus Sinensis ID: 012701

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MLEGRCLLTSREITSLCHPESKWSYMTCMIDLNGKRPLEIDGDDDCHHQRNKSLKLSNSRKTAGTSREQSDDDQGSDDNLQSEDNQQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
cccccEEEEEccccccccccccccEEEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHccHHHHHHcccccEEEEcEEcccEEEEEEEEEEccEEEEEEcccccEEEcccccccccccccccEEEEEccEEEEEcccccccccccEEEEEEcccccEEcccccccccccEEEEEEccEEEEEcccccccccccEEEEEEcccccEEEcccccccccccEEEEEccEEEEEccccccccccccEEEEEEcccccEEEcccccccccccccccccccccccccEEEEEccEEEEEEccccEEEEEEcccccEEEEccccccccccccccEEEEEEccEEEEEEccccccccEEEEEEEEccccccccEEEcccccccEEEEEEEEcc
ccccccEEEcccccccccccccccHcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHcHccEEEEEccEEEEEccccccEcEEEEEEEccccEEEEccccccEEEcccccccccccccccEEEEEccEEEEEccccccccccEEEEEEcccccccEEccccccccccEEEEEEccEEEEEEccccccccccEEEEEccccccEEEcccccccccccEEEEEccEEEEEEcccccccccccEEEEEccccccEEEEcccccccccccEcccccccccccccEEEEccEEEEEEcccccEEEEccccccEEEEccccccccccccEEEEEEEEccEEEEEEccccccccEEEEEEEcccccccccEEEccccccccEEEEEEEcc
mlegrclltsreitslchpeskwsyMTCMIdlngkrpleidgdddchhqrnkslklsnsrktagtsreqsdddqgsddnlqsednqqaddhqqsnaghssdldsliqpigrdnsisclircsrsdygsiaSLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLleweafdpirrrwmhlprmtsnecfmcsdkesLAVGTELLVFGRELTAHHISHVIYRYSILTNswssgmrmnaprclfgsasLGEIAILaggsdlegnILSSAEMYNSETqtwkvlpsmknprkmcsgvfmdgkfyviggiggsdskvltcgeeydletetwteipnmsparggaargtempasaeapplvaVVNNelyaadyadmeVRKYDKERRLWFTIgrlperansmngwglafrACGDrliviggpkasgegfielnswvpsegppqwnlLARKQSANFVYNCAVMGC
mlegrclltsreitslchpeskwsYMTCMIDLNGKRPLEIDGDDDCHHqrnkslklsnsrktagtsreqsdddqgSDDNLQSEDNQQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQtwkvlpsmknPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLEtetwteipnmsPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIgrlperansmnGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
MLEGRCLLTSREITSLCHPESKWSYMTCMIDLNGKRPLEIDGDDDCHHQRNKSLKLSNSRKTAGTSREQSDDDQGSDDNLQSEDNQQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
*****CLLTSREITSLCHPESKWSYMTCMIDLNGKR***********************************************************************PIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE*************************LVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVM**
*****CLLTSREITSLCHPESKWSYMTCMIDLN************************************************************************IQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
MLEGRCLLTSREITSLCHPESKWSYMTCMIDLNGKRPLEIDGDDDCHHQRN*************************************************DLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS**************SAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
*****CLLTSREITSLCHPESKWSYMTCMIDLN**********************************************************************SLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLEGRCLLTSREITSLCHPESKWSYMTCMIDLNGKRPLEIDGDDDCHHQRNKSLKLSNSRKTAGTSREQSDDDQGSDDNLQSEDNQQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMGC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
Q8L736467 F-box/kelch-repeat protei no no 0.978 0.959 0.651 1e-167
Q84M94421 F-box/kelch-repeat protei no no 0.906 0.985 0.601 1e-152
Q9CA63451 F-box/kelch-repeat protei no no 0.967 0.982 0.568 1e-140
Q9FKJ0393 F-box/kelch-repeat protei no no 0.768 0.895 0.462 4e-90
Q9LI89422 F-box/kelch-repeat protei no no 0.713 0.774 0.365 3e-55
Q9CAG8376 F-box/kelch-repeat protei no no 0.434 0.529 0.283 7e-18
Q93W93434 F-box/kelch-repeat protei no no 0.631 0.665 0.258 4e-17
Q0WW40383 F-box/kelch-repeat protei no no 0.652 0.780 0.226 7e-17
Q9LMR5359 F-box/kelch-repeat protei no no 0.639 0.816 0.256 5e-16
Q70JS2 1499 Ring canal kelch homolog N/A no 0.436 0.133 0.277 4e-14
>sp|Q8L736|SKI11_ARATH F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2 Back     alignment and function desciption
 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 311/477 (65%), Positives = 355/477 (74%), Gaps = 29/477 (6%)

Query: 1   MLEGRC---LLTSREITSLCHPESKWS--YMTCMID----LNGKRPLEIDGDDDCHHQRN 51
           MLE R     L++R  +S    ES WS  YM    D     NGKR LE+ G+     ++ 
Sbjct: 1   MLEDRSPDSCLSTRVFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGE----VRQT 56

Query: 52  KSLKL---------SNSRKTAGTSREQSDDDQGSDDNLQSEDNQQADDHQQSNAGHSSDL 102
           KSLKL          +S  +     EQ+D   G   + + E  QQ+D +   N G SSD 
Sbjct: 57  KSLKLMGFSIIYDSDSSDYSLSGGEEQADAAIGDGSSSRQEQEQQSDFND--NGGDSSDS 114

Query: 103 DSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFS 162
            SLI  IGRDNSI CLIRCSRSDYGSIASLN++FRSL++SGE+YRLRR NG +EHWVYFS
Sbjct: 115 HSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFS 174

Query: 163 CHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYR 222
           C LLEW AFDP+ RRWM LP M S+  FMC+DKESLAVGT+LLV G++      SHVIYR
Sbjct: 175 CQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKD---DFSSHVIYR 231

Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP 282
           YS+LTNSWSSGM+MN+PRCLFGSASLGEIAI AGG D +G IL  AEMYNSE QTW  LP
Sbjct: 232 YSLLTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITLP 291

Query: 283 SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAAR 342
            M  PRKMCSGVFMDGKFYVIGGIGG+DSK LTCGEEYDLET+ WT+IP++SP R  A +
Sbjct: 292 RMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTCGEEYDLETKKWTQIPDLSPPRSRADQ 351

Query: 343 GTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLA 402
               PA AEAPPLVAVVNN+LYAAD+ADMEVRKYDKE + W T+GRLPERA S+NGWGLA
Sbjct: 352 ADMSPA-AEAPPLVAVVNNQLYAADHADMEVRKYDKENKKWLTVGRLPERAGSVNGWGLA 410

Query: 403 FRACGDRLIVIGGPKASGEGFIELNSWVPSE-GPPQWNLLARKQSANFVYNCAVMGC 458
           FRACG+RLIVIGGPK SG GFIELNSW+PS+ GPPQW LL RK S  FVYNCAVMGC
Sbjct: 411 FRACGERLIVIGGPKCSGGGFIELNSWIPSDGGPPQWTLLDRKHSPTFVYNCAVMGC 467
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84M94|FBK15_ARATH F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1 Back     alignment and function description
>sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1 Back     alignment and function description
>sp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1 Back     alignment and function description
>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1 Back     alignment and function description
>sp|Q0WW40|FBK5_ARATH F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1 Back     alignment and function description
>sp|Q9LMR5|FK126_ARATH F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana GN=At1g15670 PE=2 SV=1 Back     alignment and function description
>sp|Q70JS2|KELC_ANOST Ring canal kelch homolog OS=Anopheles stephensi GN=kel PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
357486773480 F-box/kelch-repeat protein SKIP11 [Medic 0.980 0.935 0.685 0.0
255587925422 conserved hypothetical protein [Ricinus 0.921 1.0 0.724 0.0
356526905539 PREDICTED: F-box/kelch-repeat protein SK 0.844 0.717 0.783 0.0
359473368541 PREDICTED: F-box/kelch-repeat protein SK 0.906 0.767 0.728 1e-180
356498226537 PREDICTED: F-box/kelch-repeat protein SK 0.986 0.841 0.598 1e-179
356499787539 PREDICTED: F-box/kelch-repeat protein SK 0.986 0.838 0.6 1e-179
356567532539 PREDICTED: F-box/kelch-repeat protein SK 0.986 0.838 0.605 1e-178
297734001482 unnamed protein product [Vitis vinifera] 0.906 0.860 0.682 1e-170
379327986487 putative kelch repeat containing F-box p 0.986 0.928 0.630 1e-169
48210029513 kelch repeat-containing F-box family pro 0.975 0.871 0.621 1e-169
>gi|357486773|ref|XP_003613674.1| F-box/kelch-repeat protein SKIP11 [Medicago truncatula] gi|355515009|gb|AES96632.1| F-box/kelch-repeat protein SKIP11 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/483 (68%), Positives = 382/483 (79%), Gaps = 34/483 (7%)

Query: 2   LEGRCLLTSREITSLCHPESKWSYMTCMIDL---NGKRPLEIDGDDDCHHQR--NKSLKL 56
           L GRC + SR   S C  E+ WSYM  M+DL   NGKRP++ID  +D HH R   K L+ 
Sbjct: 6   LFGRCCVVSRLFCSTCETENDWSYMKYMLDLDIKNGKRPMKIDSAEDEHHPRKCTKMLES 65

Query: 57  SNSRKTAGTSREQSDDD----------------QGSDDNLQSEDN-----QQADDHQQSN 95
            +  +T   S +   D                 QG  D   S D+     QQ+D+ Q  +
Sbjct: 66  CHIVETVCISLQHPKDAVLPETDQKINEPLNVCQGVHDGGDSIDSSDSGIQQSDEEQ--H 123

Query: 96  AGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVI 155
           AG SSD  SL+  + RD+SI CL RCSRSDYGS+ASLN+SFR +IR+GE+YR RRLNG++
Sbjct: 124 AGDSSDSGSLLPRMNRDSSIVCLSRCSRSDYGSLASLNRSFREIIRNGEVYRWRRLNGIM 183

Query: 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHH 215
           EHWVYFSC LLEWEA+DPIR+RWMHLPRM SN+CFMCSDKESLAVGTELLVFGREL    
Sbjct: 184 EHWVYFSCALLEWEAYDPIRQRWMHLPRMASNDCFMCSDKESLAVGTELLVFGRELR--- 240

Query: 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275
            SHVIYRYS+LTNSWSSGMRMNAPRCLFGSASLGEIAILAGG D EG IL SAE+YNSET
Sbjct: 241 -SHVIYRYSLLTNSWSSGMRMNAPRCLFGSASLGEIAILAGGCDSEGRILDSAELYNSET 299

Query: 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335
           QT+++LPSM  PRKMCSGVFMDGKFYV+GGIGG DSK+LTCGEEY+L+T TWT+IP+MSP
Sbjct: 300 QTFELLPSMNKPRKMCSGVFMDGKFYVVGGIGGRDSKLLTCGEEYNLQTRTWTDIPDMSP 359

Query: 336 ARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANS 395
            R  ++RG+EMPA+ EAPPL+AVV+NELYAADYADMEV++YDKER+LW T+GRLPERA S
Sbjct: 360 GR--SSRGSEMPAATEAPPLIAVVDNELYAADYADMEVKRYDKERKLWITVGRLPERAMS 417

Query: 396 MNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAV 455
           MNGWGLAFRACG+ LIVIGGP+  GEGFIELNSWVPSEGPPQW LLARK+S NFVYNCAV
Sbjct: 418 MNGWGLAFRACGNMLIVIGGPRTHGEGFIELNSWVPSEGPPQWRLLARKRSGNFVYNCAV 477

Query: 456 MGC 458
           MGC
Sbjct: 478 MGC 480

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587925|ref|XP_002534442.1| conserved hypothetical protein [Ricinus communis] gi|223525283|gb|EEF27941.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356526905|ref|XP_003532056.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like [Glycine max] Back     alignment and taxonomy information
>gi|359473368|ref|XP_003631294.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356498226|ref|XP_003517954.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like isoform 1 [Glycine max] gi|356498228|ref|XP_003517955.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356499787|ref|XP_003518718.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like [Glycine max] Back     alignment and taxonomy information
>gi|356567532|ref|XP_003551972.1| PREDICTED: F-box/kelch-repeat protein SKIP11-like [Glycine max] Back     alignment and taxonomy information
>gi|297734001|emb|CBI15248.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|379327986|gb|AFD02178.1| putative kelch repeat containing F-box protein [Persicaria minor] Back     alignment and taxonomy information
>gi|48210029|gb|AAT40540.1| kelch repeat-containing F-box family protein, putative [Solanum demissum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
TAIR|locus:2056705467 AT2G02870 "AT2G02870" [Arabido 0.975 0.957 0.656 7e-157
TAIR|locus:2012547441 AT1G14330 "AT1G14330" [Arabido 0.958 0.995 0.656 4.4e-155
TAIR|locus:2202765421 AT1G26930 "AT1G26930" [Arabido 0.831 0.904 0.670 3e-144
TAIR|locus:2019215451 AT1G74510 "AT1G74510" [Arabido 0.967 0.982 0.570 3.6e-137
TAIR|locus:2175143393 AT5G60570 "AT5G60570" [Arabido 0.768 0.895 0.462 5.4e-86
TAIR|locus:2095138422 AT3G27150 "AT3G27150" [Arabido 0.716 0.777 0.366 3.4e-54
TAIR|locus:2168738415 AT5G40680 "AT5G40680" [Arabido 0.847 0.934 0.326 5.2e-49
TAIR|locus:2036119359 AT1G15670 "AT1G15670" [Arabido 0.462 0.590 0.314 2.5e-18
TAIR|locus:2008773376 AT1G67480 "AT1G67480" [Arabido 0.475 0.579 0.291 6.6e-17
TAIR|locus:2032855383 AT1G16250 "AT1G16250" [Arabido 0.650 0.778 0.228 7.3e-17
TAIR|locus:2056705 AT2G02870 "AT2G02870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
 Identities = 314/478 (65%), Positives = 356/478 (74%)

Query:     1 MLEGR----CLLTSREITSLCHPESKWS--YMTCMID--L--NGKRPLEIDGDDDCHHQR 50
             MLE R    CL T R  +S    ES WS  YM    D  L  NGKR LE+ G+     ++
Sbjct:     1 MLEDRSPDSCLST-RVFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGEV----RQ 55

Query:    51 NKSLKL---------SNSRKTAGTSREQSDDDQGSDDNLQSEDNQQADDHQQSNAGHSSD 101
              KSLKL          +S  +     EQ+D   G   + + E  QQ+D +   N G SSD
Sbjct:    56 TKSLKLMGFSIIYDSDSSDYSLSGGEEQADAAIGDGSSSRQEQEQQSDFND--NGGDSSD 113

Query:   102 LDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWVYF 161
               SLI  IGRDNSI CLIRCSRSDYGSIASLN++FRSL++SGE+YRLRR NG +EHWVYF
Sbjct:   114 SHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYF 173

Query:   162 SCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIY 221
             SC LLEW AFDP+ RRWM LP M S+  FMC+DKESLAVGT+LLV G++      SHVIY
Sbjct:   174 SCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKD---DFSSHVIY 230

Query:   222 RYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281
             RYS+LTNSWSSGM+MN+PRCLFGSASLGEIAI AGG D +G IL  AEMYNSE QTW  L
Sbjct:   231 RYSLLTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITL 290

Query:   282 PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAA 341
             P M  PRKMCSGVFMDGKFYVIGGIGG+DSK LTCGEEYDLET+ WT+IP++SP R  A 
Sbjct:   291 PRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTCGEEYDLETKKWTQIPDLSPPRSRAD 350

Query:   342 RGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGL 401
             +    PA AEAPPLVAVVNN+LYAAD+ADMEVRKYDKE + W T+GRLPERA S+NGWGL
Sbjct:   351 QADMSPA-AEAPPLVAVVNNQLYAADHADMEVRKYDKENKKWLTVGRLPERAGSVNGWGL 409

Query:   402 AFRACGDRLIVIGGPKASGEGFIELNSWVPSEG-PPQWNLLARKQSANFVYNCAVMGC 458
             AFRACG+RLIVIGGPK SG GFIELNSW+PS+G PPQW LL RK S  FVYNCAVMGC
Sbjct:   410 AFRACGERLIVIGGPKCSGGGFIELNSWIPSDGGPPQWTLLDRKHSPTFVYNCAVMGC 467
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005634 "nucleus" evidence=IDA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0016036 "cellular response to phosphate starvation" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
GO:0042631 "cellular response to water deprivation" evidence=RCA
TAIR|locus:2012547 AT1G14330 "AT1G14330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202765 AT1G26930 "AT1G26930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019215 AT1G74510 "AT1G74510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175143 AT5G60570 "AT5G60570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095138 AT3G27150 "AT3G27150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168738 AT5G40680 "AT5G40680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036119 AT1G15670 "AT1G15670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032855 AT1G16250 "AT1G16250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
PHA03098534 PHA03098, PHA03098, kelch-like protein; Provisiona 3e-14
PHA03098534 PHA03098, PHA03098, kelch-like protein; Provisiona 7e-12
pfam0134446 pfam01344, Kelch_1, Kelch motif 2e-08
smart0061247 smart00612, Kelch, Kelch domain 1e-07
pfam0134446 pfam01344, Kelch_1, Kelch motif 2e-07
smart0061247 smart00612, Kelch, Kelch domain 6e-06
pfam1341548 pfam13415, Kelch_3, Galactose oxidase, central dom 8e-06
pfam1396450 pfam13964, Kelch_6, Kelch motif 2e-05
PHA02790480 PHA02790, PHA02790, Kelch-like protein; Provisiona 8e-05
PRK14131 376 PRK14131, PRK14131, N-acetylneuraminic acid mutaro 3e-04
pfam1396450 pfam13964, Kelch_6, Kelch motif 4e-04
pfam0764648 pfam07646, Kelch_2, Kelch motif 4e-04
pfam1341849 pfam13418, Kelch_4, Galactose oxidase, central dom 8e-04
pfam1341849 pfam13418, Kelch_4, Galactose oxidase, central dom 0.001
pfam1341548 pfam13415, Kelch_3, Galactose oxidase, central dom 0.002
TIGR03548323 TIGR03548, mutarot_permut, cyclically-permuted mut 0.002
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information 
 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 50/218 (22%), Positives = 73/218 (33%), Gaps = 30/218 (13%)

Query: 207 FGRELTAHHISHVIYRYSILTNSWSSGMRM---NAPRCLFGSASLGEIAILAGGSDLEGN 263
           FG  +  H    +     I   S  S +           FGS  L  +    GG +    
Sbjct: 249 FGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNL 308

Query: 264 ILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE 323
            ++S   Y+++T++W  +P +  PRK       + + YVIGGI  S S  L   E +   
Sbjct: 309 SVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSIS--LNTVESWKPG 366

Query: 324 TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAA------DYADMEVRKYD 377
              W E P +   R                  V  VNN +Y        D     V  + 
Sbjct: 367 ESKWREEPPLIFPRYNPC--------------VVNVNNLIYVIGGISKNDELLKTVECFS 412

Query: 378 KERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415
                W     LP    S  G    +     ++ VIGG
Sbjct: 413 LNTNKWSKGSPLPI---SHYGGCAIYH--DGKIYVIGG 445

Length = 534
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif Back     alignment and domain information
>gnl|CDD|128874 smart00612, Kelch, Kelch domain Back     alignment and domain information
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif Back     alignment and domain information
>gnl|CDD|128874 smart00612, Kelch, Kelch domain Back     alignment and domain information
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain Back     alignment and domain information
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif Back     alignment and domain information
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif Back     alignment and domain information
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif Back     alignment and domain information
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain Back     alignment and domain information
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain Back     alignment and domain information
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain Back     alignment and domain information
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA02713557 hypothetical protein; Provisional 100.0
PLN02153341 epithiospecifier protein 100.0
PLN02153341 epithiospecifier protein 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA03098534 kelch-like protein; Provisional 100.0
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 100.0
PLN02193470 nitrile-specifier protein 100.0
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 100.0
PHA02713557 hypothetical protein; Provisional 100.0
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 100.0
PLN02193470 nitrile-specifier protein 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 100.0
PHA03098534 kelch-like protein; Provisional 100.0
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 100.0
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
KOG4693392 consensus Uncharacterized conserved protein, conta 99.98
KOG4693392 consensus Uncharacterized conserved protein, conta 99.97
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 99.94
KOG0379482 consensus Kelch repeat-containing proteins [Genera 99.93
KOG1230 521 consensus Protein containing repeated kelch motifs 99.9
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 99.9
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 99.89
KOG1230 521 consensus Protein containing repeated kelch motifs 99.88
COG3055381 Uncharacterized protein conserved in bacteria [Fun 99.78
COG3055 381 Uncharacterized protein conserved in bacteria [Fun 99.62
PF1396450 Kelch_6: Kelch motif 99.22
PF1396450 Kelch_6: Kelch motif 99.12
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 99.01
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 99.0
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 98.88
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 98.85
PF1341549 Kelch_3: Galactose oxidase, central domain 98.84
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 98.81
PF1341549 Kelch_3: Galactose oxidase, central domain 98.8
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 98.78
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 98.78
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 98.77
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 98.67
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 98.67
smart0061247 Kelch Kelch domain. 98.65
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 98.64
smart0061247 Kelch Kelch domain. 98.56
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 98.47
PLN02772 398 guanylate kinase 98.36
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 98.31
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.28
PF1385442 Kelch_5: Kelch motif 98.27
PLN02772 398 guanylate kinase 98.25
PF1385442 Kelch_5: Kelch motif 98.2
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 97.97
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 97.93
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.9
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 97.9
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.79
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 97.79
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.77
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.71
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.71
PF03089337 RAG2: Recombination activating protein 2; InterPro 97.63
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 97.54
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 97.46
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 97.21
PF03089337 RAG2: Recombination activating protein 2; InterPro 97.17
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 96.94
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 96.82
PF12768281 Rax2: Cortical protein marker for cell polarity 96.62
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 96.34
PF09910339 DUF2139: Uncharacterized protein conserved in arch 96.31
KOG0274 537 consensus Cdc4 and related F-box and WD-40 protein 96.3
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 96.27
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 96.03
KOG2055514 consensus WD40 repeat protein [General function pr 95.94
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 95.9
PRK11028330 6-phosphogluconolactonase; Provisional 95.88
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 95.77
KOG2055514 consensus WD40 repeat protein [General function pr 95.63
PRK11028330 6-phosphogluconolactonase; Provisional 95.62
PF12768281 Rax2: Cortical protein marker for cell polarity 95.55
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 95.52
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 95.42
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 95.18
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 95.17
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 95.14
PRK00178430 tolB translocation protein TolB; Provisional 95.06
PRK04792448 tolB translocation protein TolB; Provisional 94.89
KOG0310 487 consensus Conserved WD40 repeat-containing protein 94.89
cd00094194 HX Hemopexin-like repeats.; Hemopexin is a heme-bi 94.76
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 94.72
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 94.71
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 94.57
KOG0316307 consensus Conserved WD40 repeat-containing protein 94.52
PLN00181793 protein SPA1-RELATED; Provisional 94.23
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 94.22
KOG0299479 consensus U3 snoRNP-associated protein (contains W 94.14
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 94.09
PLN029191057 haloacid dehalogenase-like hydrolase family protei 94.05
cd00216 488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 94.03
KOG2997366 consensus F-box protein FBX9 [General function pre 93.87
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 93.78
PRK13684334 Ycf48-like protein; Provisional 93.72
PRK13684334 Ycf48-like protein; Provisional 93.68
PRK05137435 tolB translocation protein TolB; Provisional 93.6
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 93.49
COG4946 668 Uncharacterized protein related to the periplasmic 93.41
PRK04922433 tolB translocation protein TolB; Provisional 93.32
cd00094194 HX Hemopexin-like repeats.; Hemopexin is a heme-bi 93.15
COG3823262 Glutamine cyclotransferase [Posttranslational modi 93.13
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 92.68
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 92.38
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 92.28
PRK04043419 tolB translocation protein TolB; Provisional 92.23
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 91.94
smart00284255 OLF Olfactomedin-like domains. 91.92
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 91.83
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 91.79
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 91.49
COG1520370 FOG: WD40-like repeat [Function unknown] 91.49
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 91.2
KOG0310 487 consensus Conserved WD40 repeat-containing protein 91.15
COG3386307 Gluconolactonase [Carbohydrate transport and metab 90.73
PTZ00421 493 coronin; Provisional 90.5
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 90.27
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 90.22
PRK05137435 tolB translocation protein TolB; Provisional 90.11
KOG0289506 consensus mRNA splicing factor [General function p 89.65
PRK02889427 tolB translocation protein TolB; Provisional 89.43
smart00284255 OLF Olfactomedin-like domains. 89.43
KOG2321 703 consensus WD40 repeat protein [General function pr 89.1
KOG0316307 consensus Conserved WD40 repeat-containing protein 89.1
PRK04792448 tolB translocation protein TolB; Provisional 88.89
PLN00033398 photosystem II stability/assembly factor; Provisio 88.82
KOG0266456 consensus WD40 repeat-containing protein [General 88.36
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 88.29
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 88.21
PRK04922433 tolB translocation protein TolB; Provisional 88.06
PRK00178430 tolB translocation protein TolB; Provisional 88.04
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 87.92
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 87.86
PLN00181793 protein SPA1-RELATED; Provisional 87.68
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 87.68
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 87.23
KOG2321 703 consensus WD40 repeat protein [General function pr 87.16
KOG0281499 consensus Beta-TrCP (transducin repeats containing 86.84
KOG0296 399 consensus Angio-associated migratory cell protein 86.63
KOG0293519 consensus WD40 repeat-containing protein [Function 85.96
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 85.66
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 85.24
COG1520370 FOG: WD40-like repeat [Function unknown] 83.75
PTZ00420 568 coronin; Provisional 83.64
PRK03629429 tolB translocation protein TolB; Provisional 83.59
KOG0286343 consensus G-protein beta subunit [General function 83.03
PF12217367 End_beta_propel: Catalytic beta propeller domain o 82.23
PTZ00421 493 coronin; Provisional 82.2
KOG4378 673 consensus Nuclear protein COP1 [Signal transductio 82.01
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 81.01
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 80.72
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-42  Score=363.50  Aligned_cols=281  Identities=29%  Similarity=0.436  Sum_probs=244.4

Q ss_pred             ccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceE
Q 012701          141 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVI  220 (458)
Q Consensus       141 ~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v  220 (458)
                      ..+.++.+||..+..       .....++.|||.++.|..+++||.+|+.    .++++++++||++||++......+++
T Consensus       283 ~~~~l~~vGG~~~~~-------~~~~~ve~yd~~~~~w~~~a~m~~~r~~----~~~~~~~~~lYv~GG~~~~~~~l~~v  351 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQG-------QSLRSVECYDPKTNEWSSLAPMPSPRCR----VGVAVLNGKLYVVGGYDSGSDRLSSV  351 (571)
T ss_pred             CCCeEEEECCCCCCC-------cccceeEEecCCcCcEeecCCCCccccc----ccEEEECCEEEEEccccCCCcccceE
Confidence            356688888887622       1256889999999999999999999874    44688999999999997434477899


Q ss_pred             EEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEE
Q 012701          221 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKF  300 (458)
Q Consensus       221 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~l  300 (458)
                      ++||+.+|+|+.+++|+.+|..++++++++.||++||.++. ..++++++|||.+++|+.+++|+.+|..+++++++|+|
T Consensus       352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL  430 (571)
T ss_pred             EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence            99999999999999999999999999999999999999976 46899999999999999999999999999999999999


Q ss_pred             EEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEEE
Q 012701          301 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRK  375 (458)
Q Consensus       301 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~~  375 (458)
                      |++||..+. ...++++++|||.+++|+.+++|+.+|.++              ++++++++||++||..     ..|++
T Consensus       431 Yi~GG~~~~-~~~l~sve~YDP~t~~W~~~~~M~~~R~~~--------------g~a~~~~~iYvvGG~~~~~~~~~VE~  495 (571)
T KOG4441|consen  431 YIIGGGDGS-SNCLNSVECYDPETNTWTLIAPMNTRRSGF--------------GVAVLNGKIYVVGGFDGTSALSSVER  495 (571)
T ss_pred             EEEcCcCCC-ccccceEEEEcCCCCceeecCCcccccccc--------------eEEEECCEEEEECCccCCCccceEEE
Confidence            999998843 338899999999999999999999999999              8999999999999965     46899


Q ss_pred             EeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCceeeeEEE
Q 012701          376 YDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAV  455 (458)
Q Consensus       376 yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v  455 (458)
                      ||+.+++|+.+++|+.++.     ++++++.+++||++||.+.. .....+.+|+|..  ++|+....+...+....++|
T Consensus       496 ydp~~~~W~~v~~m~~~rs-----~~g~~~~~~~ly~vGG~~~~-~~l~~ve~ydp~~--d~W~~~~~~~~~~~~~~~~~  567 (571)
T KOG4441|consen  496 YDPETNQWTMVAPMTSPRS-----AVGVVVLGGKLYAVGGFDGN-NNLNTVECYDPET--DTWTEVTEPESGRGGAGVAV  567 (571)
T ss_pred             EcCCCCceeEcccCccccc-----cccEEEECCEEEEEecccCc-cccceeEEcCCCC--CceeeCCCccccccCcceEE
Confidence            9999999999999998886     36788999999999996554 4667888887755  99999999445555555555


Q ss_pred             e
Q 012701          456 M  456 (458)
Q Consensus       456 ~  456 (458)
                      +
T Consensus       568 ~  568 (571)
T KOG4441|consen  568 I  568 (571)
T ss_pred             e
Confidence            4

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PF12768 Rax2: Cortical protein marker for cell polarity Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PF12768 Rax2: Cortical protein marker for cell polarity Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00094 HX Hemopexin-like repeats Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>cd00094 HX Hemopexin-like repeats Back     alignment and domain information
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2vpj_A301 Crystal Structure Of The Kelch Domain Of Human Klhl 5e-10
3ii7_A306 Crystal Structure Of The Kelch Domain Of Human Klhl 2e-09
2dyh_A318 Crystal Structure Of The Keap1 Protein In Complexed 2e-09
1x2j_A316 Structural Basis For The Defects Of Human Lung Canc 2e-09
1u6d_X308 Crystal Structure Of The Kelch Domain Of Human Keap 2e-09
1u6d_X308 Crystal Structure Of The Kelch Domain Of Human Keap 4e-04
3vng_A309 Crystal Structure Of Keap1 In Complex With Syntheti 3e-09
2xn4_A302 Crystal Structure Of The Kelch Domain Of Human Klhl 8e-08
1zgk_A308 1.35 Angstrom Structure Of The Kelch Domain Of Keap 2e-07
2woz_A318 The Novel Beta-Propeller Of The Btb-Kelch Protein K 1e-06
2eid_A 639 Galactose Oxidase W290g Mutant Length = 639 7e-04
4asc_A315 Crystal Structure Of The Kelch Domain Of Human Kbtb 8e-04
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 Back     alignment and structure 
Iteration: 1

 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHV-IYRYSILT 227
           E +DP  + W  LP +T    ++ S    +++   + V G       +S V    Y+   
Sbjct: 34  EKYDPKTQEWSFLPSITRKRRYVAS----VSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89
Query: 228 NS-WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN 286
           +  W S   MN  R L G+ +LG++  ++GG D      +S E Y+     W +L  M+ 
Sbjct: 90  DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD-GSRRHTSMERYDPNIDQWSMLGDMQT 148
Query: 287 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEM 346
            R+    V   G  Y +GG  G +  +L   E+YD  T  WT +  M+  R GA      
Sbjct: 149 AREGAGLVVASGVIYCLGGYDGLN--ILNSVEKYDPHTGHWTNVTPMATKRSGAG----- 201
Query: 347 PASAEAPPLVAVVNNELYAADYAD-----MEVRKYDKERRLWFTI 386
                    VA++N+ +Y     D       V  Y+     W T+
Sbjct: 202 ---------VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306 Back     alignment and structure
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318 Back     alignment and structure
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316 Back     alignment and structure
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 Back     alignment and structure
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 Back     alignment and structure
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309 Back     alignment and structure
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 Back     alignment and structure
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308 Back     alignment and structure
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 Back     alignment and structure
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant Length = 639 Back     alignment and structure
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 4e-41
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 2e-32
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 1e-27
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 1e-25
2xn4_A 302 Kelch-like protein 2; structural protein, cytoskel 4e-11
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 2e-39
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 2e-30
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 1e-28
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 3e-25
1zgk_A 308 Kelch-like ECH-associated protein 1; beta-propelle 6e-05
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 4e-39
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 6e-30
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 1e-27
3ii7_A 306 Kelch-like protein 7; protein-binding, kelch-repea 7e-24
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 4e-16
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 8e-38
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 6e-30
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 2e-28
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 4e-25
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 8e-36
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 5e-27
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 7e-27
2woz_A 318 Kelch repeat and BTB domain-containing protein 10; 1e-18
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 1e-11
2woz_A 318 Kelch repeat and BTB domain-containing protein 10; 1e-08
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 2e-35
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 8e-34
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 2e-25
4asc_A 315 Kelch repeat and BTB domain-containing protein 5; 3e-18
4asc_A 315 Kelch repeat and BTB domain-containing protein 5; 7e-09
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 2e-19
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 6e-17
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 8e-15
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 4e-11
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 2e-04
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 6e-17
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 2e-13
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 2e-15
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 8e-09
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
 Score =  147 bits (374), Expect = 4e-41
 Identities = 63/253 (24%), Positives = 91/253 (35%), Gaps = 32/253 (12%)

Query: 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN 228
           E +D    RW  +  + S  C        + +   +   G    +  +  V   Y  + +
Sbjct: 33  ECYDFKEERWHQVAELPSRRCRAGM----VYMAGLVFAVGGFNGSLRVRTV-DSYDPVKD 87

Query: 229 SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR 288
            W+S   M   R   G+A L  +    GG D     LSS E YN ++  W  +  M   R
Sbjct: 88  QWTSVANMRDRRSTLGAAVLNGLLYAVGGFD-GSTGLSSVEAYNIKSNEWFHVAPMNTRR 146

Query: 289 KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 348
                  + G  Y +GG   +  + L+  E Y+  T  WT I  MS  R GA        
Sbjct: 147 SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAG------- 199

Query: 349 SAEAPPLVAVVNNELYAA----DYADM-EVRKYDKERRLWFTIGRLPE-RANSMNGWGLA 402
                  V V+NN LYA            V  YD     W  +  +   R N+    G+ 
Sbjct: 200 -------VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA----GVC 248

Query: 403 FRACGDRLIVIGG 415
             A    L V+GG
Sbjct: 249 --AVNGLLYVVGG 259
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 100.0
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 100.0
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 100.0
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 100.0
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 100.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 100.0
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 100.0
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 100.0
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 100.0
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 100.0
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 100.0
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 100.0
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 100.0
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 100.0
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 100.0
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 100.0
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 99.97
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 99.96
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.84
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.81
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.47
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 98.39
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 98.35
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 98.13
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 98.07
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 98.04
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 98.01
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 97.96
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 97.84
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 97.83
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.77
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 97.75
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 97.68
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.68
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 97.57
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.49
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 97.48
3jrp_A379 Fusion protein of protein transport protein SEC13 97.48
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 97.37
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 97.37
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.32
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.29
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.24
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 97.23
3jrp_A 379 Fusion protein of protein transport protein SEC13 97.22
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 97.21
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 97.2
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.18
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 97.17
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 97.14
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.11
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 97.1
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 97.09
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.06
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.05
4g56_B357 MGC81050 protein; protein arginine methyltransfera 97.05
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 97.0
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 96.99
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 96.98
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 96.9
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 96.9
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 96.88
3v65_B386 Low-density lipoprotein receptor-related protein; 96.88
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 96.87
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.81
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.76
2pm7_B297 Protein transport protein SEC13, protein transport 96.75
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 96.73
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 96.73
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 96.72
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 96.72
3ow8_A321 WD repeat-containing protein 61; structural genomi 96.72
2p4o_A306 Hypothetical protein; putative lactonase, structur 96.71
3p5b_L400 Low density lipoprotein receptor variant; B-propel 96.66
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.65
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.64
3jro_A 753 Fusion protein of protein transport protein SEC13 96.63
2pm7_B297 Protein transport protein SEC13, protein transport 96.63
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.62
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 96.61
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.58
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 96.56
3jro_A 753 Fusion protein of protein transport protein SEC13 96.52
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.51
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 96.5
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.49
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.49
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 96.45
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 96.44
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.42
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 96.42
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.41
3v9f_A781 Two-component system sensor histidine kinase/RESP 96.39
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 96.37
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 96.37
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 96.34
3v9f_A 781 Two-component system sensor histidine kinase/RESP 96.32
3ow8_A321 WD repeat-containing protein 61; structural genomi 96.3
1nir_A 543 Nitrite reductase; hemoprotein, denitrification, d 96.28
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.28
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.27
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.26
2vdu_B 450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.26
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.25
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 96.24
4a2l_A 795 BT_4663, two-component system sensor histidine kin 96.23
2fp8_A322 Strictosidine synthase; six bladed beta propeller 96.21
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.19
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 96.17
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 96.16
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.16
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 96.15
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 96.14
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 96.12
4a2l_A 795 BT_4663, two-component system sensor histidine kin 96.07
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 96.07
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.06
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 96.03
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.01
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 96.0
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 96.0
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 95.99
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 95.97
1w6s_A 599 Methanol dehydrogenase subunit 1; anisotropic, ele 95.96
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 95.95
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 95.94
2ad6_A 571 Methanol dehydrogenase subunit 1; PQQ configuratio 95.93
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 95.93
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 95.92
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 95.9
2ad6_A 571 Methanol dehydrogenase subunit 1; PQQ configuratio 95.89
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 95.85
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 95.84
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 95.77
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 95.75
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 95.68
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 95.66
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 95.64
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 95.62
2fp8_A322 Strictosidine synthase; six bladed beta propeller 95.6
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 95.6
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.59
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 95.59
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 95.54
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.53
1qks_A 567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 95.53
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 95.53
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 95.52
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 95.51
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 95.45
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 95.45
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 95.43
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 95.42
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 95.4
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 95.4
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 95.38
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 95.36
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 95.35
3v65_B386 Low-density lipoprotein receptor-related protein; 95.32
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 95.3
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 95.28
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 95.25
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 95.21
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 95.21
3ei3_B 383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.12
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 95.1
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 95.07
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 95.01
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 94.97
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.96
1flg_A 582 Protein (quinoprotein ethanol dehydrogenase); supe 94.96
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 94.93
3fvz_A329 Peptidyl-glycine alpha-amidating monooxygenase; be 94.92
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.82
1erj_A393 Transcriptional repressor TUP1; beta-propeller, tr 94.78
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 94.73
4e54_B435 DNA damage-binding protein 2; beta barrel, double 94.73
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 94.73
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 94.71
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 94.7
1w6s_A 599 Methanol dehydrogenase subunit 1; anisotropic, ele 94.68
3hrp_A409 Uncharacterized protein; NP_812590.1, structural g 94.66
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 94.64
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.63
3b7f_A 394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 94.59
1ijq_A316 LDL receptor, low-density lipoprotein receptor; be 94.45
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 94.45
1flg_A 582 Protein (quinoprotein ethanol dehydrogenase); supe 94.37
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 94.37
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 94.36
3ott_A758 Two-component system sensor histidine kinase; beta 94.35
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 94.3
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 94.3
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 94.26
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 94.24
2z3z_A 706 Dipeptidyl aminopeptidase IV; peptidase family S9, 94.12
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 94.12
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 94.05
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 93.96
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 93.93
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 93.89
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.82
3azo_A 662 Aminopeptidase; POP family, hydrolase; 2.00A {Stre 93.76
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 93.75
2p4o_A306 Hypothetical protein; putative lactonase, structur 93.64
4e54_B 435 DNA damage-binding protein 2; beta barrel, double 93.54
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 93.53
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.5
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 93.49
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 93.4
3p5b_L400 Low density lipoprotein receptor variant; B-propel 93.28
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 93.28
1pex_A207 Collagenase-3, MMP-13; C-terminal hemopexin-like d 93.19
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 93.18
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 93.14
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 93.13
2ymu_A577 WD-40 repeat protein; unknown function, two domain 92.79
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 92.63
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 92.61
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 92.47
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 92.27
3c5m_A396 Oligogalacturonate lyase; blade-shaped beta-propel 92.26
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 92.07
2xyi_A430 Probable histone-binding protein CAF1; transcripti 92.04
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 91.95
3ott_A 758 Two-component system sensor histidine kinase; beta 91.92
2ymu_A577 WD-40 repeat protein; unknown function, two domain 91.91
3mmy_A 368 MRNA export factor; mRNA export, nuclear protein; 91.86
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 91.86
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 91.79
3kya_A496 Putative phosphatase; structural genomics, joint c 91.61
1qhu_A460 Protein (hemopexin); beta propeller, HAEM binding 91.45
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 91.45
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 91.41
2ece_A462 462AA long hypothetical selenium-binding protein; 91.34
1jmx_B 349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 91.23
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 91.02
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 90.96
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 90.93
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 90.93
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 90.87
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 90.82
1qhu_A460 Protein (hemopexin); beta propeller, HAEM binding 90.76
2hz6_A 369 Endoplasmic reticulum to nucleus signalling 1 isof 90.65
2xyi_A430 Probable histone-binding protein CAF1; transcripti 90.63
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 90.58
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 90.47
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 90.46
3sov_A318 LRP-6, low-density lipoprotein receptor-related pr 90.36
2ecf_A 741 Dipeptidyl peptidase IV; prolyl oligopeptidase fam 90.26
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 90.07
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 90.06
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 89.87
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 89.44
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 89.39
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 89.13
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 89.01
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 88.98
2xbg_A 327 YCF48-like protein; photosynthesis, photosystem II 88.48
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 88.31
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 88.23
2oit_A434 Nucleoporin 214KDA; NH2 terminal domain of NUP214/ 88.04
3tc9_A430 Hypothetical hydrolase; 6-bladed beta-propeller, i 87.39
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 87.32
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 87.22
1itv_A195 MMP9; adaptive molecular recognition, beta propell 87.01
2hz6_A 369 Endoplasmic reticulum to nucleus signalling 1 isof 86.81
1nr0_A 611 Actin interacting protein 1; beta propeller, WD40 86.8
1su3_A450 Interstitial collagenase; prodomain, hemopexin dom 86.32
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 85.66
2gop_A347 Trilobed protease; beta propeller, open velcro, hy 85.6
1k32_A 1045 Tricorn protease; protein degradation, substrate g 85.46
3s94_A619 LRP-6, low-density lipoprotein receptor-related pr 85.09
4hw6_A433 Hypothetical protein, IPT/TIG domain protein; puta 84.94
2qe8_A343 Uncharacterized protein; structural genomics, join 84.9
3iuj_A 693 Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas 84.79
4ggc_A 318 P55CDC, cell division cycle protein 20 homolog; ce 84.65
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 83.91
3ba0_A365 Macrophage metalloelastase; FULL-length MMP-12, he 83.88
1k32_A 1045 Tricorn protease; protein degradation, substrate g 83.86
3c7x_A196 Matrix metalloproteinase-14; membrane protein inte 83.79
2cn3_A 737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 83.74
2bkl_A 695 Prolyl endopeptidase; mechanistic study, celiac sp 83.67
3lp9_A227 LS-24; SEED albumin, plant protein; HET: SPM; 2.20 82.78
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 82.63
1yr2_A 741 Prolyl oligopeptidase; prolyl endopeptidase, mecha 82.55
3oyo_A225 Hemopexin fold protein CP4; seeds, plant protein; 81.68
2xdw_A 710 Prolyl endopeptidase; alpha/beta-hydrolase, amnesi 80.94
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 80.68
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 80.3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.1e-43  Score=345.09  Aligned_cols=280  Identities=23%  Similarity=0.359  Sum_probs=243.8

Q ss_pred             ccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceE
Q 012701          141 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVI  220 (458)
Q Consensus       141 ~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v  220 (458)
                      ..+.+|++||.....         .+++++||+.+++|..++++|.+|..    +++++++++|||+||.... ...+++
T Consensus        14 ~~~~i~v~GG~~~~~---------~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~-~~~~~~   79 (302)
T 2xn4_A           14 LPKLMVVVGGQAPKA---------IRSVECYDFKEERWHQVAELPSRRCR----AGMVYMAGLVFAVGGFNGS-LRVRTV   79 (302)
T ss_dssp             -CEEEEEECCBSSSB---------CCCEEEEETTTTEEEEECCCSSCCBS----CEEEEETTEEEEESCBCSS-SBCCCE
T ss_pred             CCCEEEEECCCCCCC---------CCcEEEEcCcCCcEeEcccCCccccc----ceEEEECCEEEEEeCcCCC-ccccce
Confidence            467899999976532         56789999999999999999998864    4457889999999998544 356889


Q ss_pred             EEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEE
Q 012701          221 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKF  300 (458)
Q Consensus       221 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~l  300 (458)
                      ++||+.+++|+.+++||.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.+++||.+|..|++++++++|
T Consensus        80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i  158 (302)
T 2xn4_A           80 DSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLL  158 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred             EEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEE
Confidence            99999999999999999999999999999999999998764 45789999999999999999999999999999999999


Q ss_pred             EEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEEE
Q 012701          301 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRK  375 (458)
Q Consensus       301 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~~  375 (458)
                      ||+||..+.....++++++||+.+++|+.++++|.+|..+              ++++++++||++||..     +++++
T Consensus       159 yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~~~  224 (302)
T 2xn4_A          159 YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA--------------GVGVLNNLLYAVGGHDGPLVRKSVEV  224 (302)
T ss_dssp             EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEECCBSSSSBCCCEEE
T ss_pred             EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc--------------cEEEECCEEEEECCCCCCcccceEEE
Confidence            9999987544456788999999999999999999999998              8899999999999853     68999


Q ss_pred             EeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEee-ccCCCceeeeEE
Q 012701          376 YDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLA-RKQSANFVYNCA  454 (458)
Q Consensus       376 yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~-~~p~~~~~~~~~  454 (458)
                      ||+.+++|+.++.+|.++.     ++++++++++|||+||.... ....++.+|++..  ++|+.++ .+|.+|..|+++
T Consensus       225 yd~~~~~W~~~~~~~~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~--~~W~~~~~~~~~~r~~~~~~  296 (302)
T 2xn4_A          225 YDPTTNAWRQVADMNMCRR-----NAGVCAVNGLLYVVGGDDGS-CNLASVEYYNPTT--DKWTVVSSCMSTGRSYAGVT  296 (302)
T ss_dssp             EETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT--TEEEECSSCCSSCCBSCEEE
T ss_pred             EeCCCCCEeeCCCCCCccc-----cCeEEEECCEEEEECCcCCC-cccccEEEEcCCC--CeEEECCcccCcccccceEE
Confidence            9999999999999988764     46677889999999997543 2345667777654  8999997 899999999999


Q ss_pred             Eee
Q 012701          455 VMG  457 (458)
Q Consensus       455 v~g  457 (458)
                      +++
T Consensus       297 ~~~  299 (302)
T 2xn4_A          297 VID  299 (302)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            986
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Back     alignment and structure
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Back     alignment and structure
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* Back     alignment and structure
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} Back     alignment and structure
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Back     alignment and structure
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Back     alignment and structure
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} Back     alignment and structure
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d1zgka1288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 1e-13
d1zgka1288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 1e-08
d1zgka1288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 2e-06
d1zgka1288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 3e-04
d1zgka1288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 6e-04
d1zgka1 288 b.68.11.1 (A:322-609) Kelch-like ECH-associated pr 9e-04
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 1e-11
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 9e-10
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 1e-07
d1k3ia3387 b.69.1.1 (A:151-537) Galactose oxidase, central do 3e-07
d1k3ia3 387 b.69.1.1 (A:151-537) Galactose oxidase, central do 5e-07
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 1e-13
 Identities = 45/191 (23%), Positives = 65/191 (34%), Gaps = 12/191 (6%)

Query: 151 LNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRE 210
             G     ++ +         D        L R       + +       G         
Sbjct: 106 AVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF-------- 157

Query: 211 LTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEM 270
               +  +    Y    N W     MN  R   G   L      AGG D +   L+S E 
Sbjct: 158 -DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVER 215

Query: 271 YNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI 330
           Y+ ET+TW  +  MK+ R         G+ YV+GG  G     L   E YD +T+TW+E+
Sbjct: 216 YDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH--TFLDSVECYDPDTDTWSEV 273

Query: 331 PNMSPARGGAA 341
             M+  R G  
Sbjct: 274 TRMTSGRSGVG 284
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 100.0
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.96
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 99.94
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.58
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.75
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 97.45
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.08
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 97.06
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.95
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.95
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 96.87
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 96.74
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 96.14
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.0
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.0
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 96.0
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 95.92
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 95.88
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 95.87
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 95.76
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 95.53
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 95.44
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.42
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 95.32
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 95.24
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 95.23
d1pexa_192 Collagenase-3 (MMP-13), C-terminal domain {Human ( 95.22
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.17
d1k32a3 360 Tricorn protease domain 2 {Archaeon Thermoplasma a 95.12
d1su3a2195 Collagenase (MMP1), C-terminal domain {Human (Homo 95.09
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 95.0
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 94.92
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 94.8
d1tbga_340 beta1-subunit of the signal-transducing G protein 94.61
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 94.17
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 94.03
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 93.94
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 93.54
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 93.23
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 93.19
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 92.98
d1itva_195 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 92.82
d1gena_200 Gelatinase A (MMP-2), C-terminal domain {Human (Ho 92.36
d1pexa_192 Collagenase-3 (MMP-13), C-terminal domain {Human ( 92.14
d1tbga_340 beta1-subunit of the signal-transducing G protein 91.77
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 91.62
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 91.26
d1itva_195 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 90.63
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 90.39
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 89.82
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 89.54
d1kb0a2 573 Quinoprotein alcohol dehydrogenase, N-terminal dom 89.47
d1su3a2195 Collagenase (MMP1), C-terminal domain {Human (Homo 88.67
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 88.64
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 88.62
d1qhua1192 Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 88.58
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 87.09
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 86.54
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 86.19
d1jmxb_ 346 Quinohemoprotein amine dehydrogenase B chain {Pseu 86.18
d1kb0a2 573 Quinoprotein alcohol dehydrogenase, N-terminal dom 85.75
d1qhua1192 Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 85.07
d2ad6a1 571 Methanol dehydrogenase, heavy chain {Methylophilus 84.87
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 83.79
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 83.71
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 82.99
d1flga_ 582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 82.69
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 80.36
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-39  Score=306.72  Aligned_cols=276  Identities=25%  Similarity=0.383  Sum_probs=239.6

Q ss_pred             cCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCC---cCccc
Q 012701          142 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTA---HHISH  218 (458)
Q Consensus       142 s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~~  218 (458)
                      ...+|++||.....         ++.++.||+.+++|+.+++||.+|..    +++++++++|||+||....   ....+
T Consensus         4 g~~iyv~GG~~~~~---------~~~~~~yd~~t~~W~~~~~~p~~R~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~   70 (288)
T d1zgka1           4 GRLIYTAGGYFRQS---------LSYLEAYNPSNGTWLRLADLQVPRSG----LAGCVVGGLLYAVGGRNNSPDGNTDSS   70 (288)
T ss_dssp             CCCEEEECCBSSSB---------CCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCEEEETTEEEECC
T ss_pred             CCEEEEECCcCCCC---------CceEEEEECCCCeEEECCCCCCccce----eEEEEECCEEEEEeCcccCCCCccccc
Confidence            46789999986543         67899999999999999999999864    4568889999999996421   23567


Q ss_pred             eEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC
Q 012701          219 VIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG  298 (458)
Q Consensus       219 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g  298 (458)
                      ++++||+.+++|+.+++||.+|..|++++++++||++||..+. ..++.++.||+.++.|...+.++.+|..++++..++
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  149 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR  149 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred             hhhhcccccccccccccccceecceeccccceeeEEecceecc-cccceeeeeccccCccccccccccccccceeeeeee
Confidence            8999999999999999999999999999999999999998754 457889999999999999999999999999999999


Q ss_pred             EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeE
Q 012701          299 KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEV  373 (458)
Q Consensus       299 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v  373 (458)
                      ++|++||...  ......++.||+.+++|...+.++..+..+              ++++.+++||++||..     ..+
T Consensus       150 ~~~~~GG~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~i~i~GG~~~~~~~~~~  213 (288)
T d1zgka1         150 LLYAVGGFDG--TNRLNSAECYYPERNEWRMITAMNTIRSGA--------------GVCVLHNCIYAAGGYDGQDQLNSV  213 (288)
T ss_dssp             EEEEECCBCS--SCBCCCEEEEETTTTEEEECCCCSSCCBSC--------------EEEEETTEEEEECCBCSSSBCCCE
T ss_pred             cceEecCccc--ccccceEEEeeccccccccccccccccccc--------------cccceeeeEEEecCccccccccce
Confidence            9999999863  445678999999999999999888888877              8899999999999754     688


Q ss_pred             EEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCceeeeE
Q 012701          374 RKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNC  453 (458)
Q Consensus       374 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~  453 (458)
                      ++||..+++|..++++|.++.     ++++++++++||||||.+.. .....+.+|++..  ++|+++++||.+|..|++
T Consensus       214 ~~~~~~~~~~~~~~~~p~~r~-----~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd~~~--~~W~~~~~~p~~R~~~~~  285 (288)
T d1zgka1         214 ERYDVETETWTFVAPMKHRRS-----ALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDT--DTWSEVTRMTSGRSGVGV  285 (288)
T ss_dssp             EEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS-CBCCEEEEEETTT--TEEEEEEECSSCCBSCEE
T ss_pred             eeeeecceeeecccCccCccc-----ceEEEEECCEEEEEecCCCC-eecceEEEEECCC--CEEEECCCCCCCcEeEEE
Confidence            999999999999998888774     46777899999999997543 4555677777755  899999999999999998


Q ss_pred             EE
Q 012701          454 AV  455 (458)
Q Consensus       454 ~v  455 (458)
                      ||
T Consensus       286 ~~  287 (288)
T d1zgka1         286 AV  287 (288)
T ss_dssp             EE
T ss_pred             EE
Confidence            87
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure