Citrus Sinensis ID: 012707
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S746 | 594 | Protein HOTHEAD OS=Arabid | no | no | 0.925 | 0.713 | 0.533 | 1e-131 | |
| Q9SSM2 | 552 | (R)-mandelonitrile lyase- | no | no | 0.836 | 0.693 | 0.450 | 5e-94 | |
| P52706 | 563 | (R)-mandelonitrile lyase | N/A | no | 0.842 | 0.685 | 0.384 | 2e-79 | |
| Q945K2 | 563 | (R)-mandelonitrile lyase | N/A | no | 0.842 | 0.685 | 0.377 | 6e-78 | |
| O50048 | 576 | (R)-mandelonitrile lyase | N/A | no | 0.849 | 0.675 | 0.378 | 5e-77 | |
| P52707 | 573 | (R)-mandelonitrile lyase | N/A | no | 0.849 | 0.678 | 0.362 | 5e-76 | |
| O82784 | 574 | (R)-mandelonitrile lyase | N/A | no | 0.849 | 0.677 | 0.369 | 4e-73 | |
| O24243 | 559 | (R)-mandelonitrile lyase | N/A | no | 0.814 | 0.667 | 0.359 | 1e-70 | |
| Q6FDF9 | 553 | Choline dehydrogenase OS= | yes | no | 0.700 | 0.580 | 0.265 | 1e-15 | |
| B2JS89 | 572 | Choline dehydrogenase OS= | yes | no | 0.685 | 0.548 | 0.274 | 1e-15 |
| >sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/439 (53%), Positives = 300/439 (68%), Gaps = 15/439 (3%)
Query: 27 LIMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTK 86
+ GWD +LV ESY WVE+ + +P + WQ A+RD L+EVGV P+NGFTYDH+ GTK
Sbjct: 156 FVKRAGWDPKLVKESYPWVEREIVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTK 215
Query: 87 IGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATG 146
IGGTIFD+ G+RHTAA+LL YANP L +L++A+V K++F G RP GV+F+D G
Sbjct: 216 IGGTIFDRFGRRHTAAELLAYANPQKLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKG 274
Query: 147 AKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDN 198
+H+A L N +E+I+S+GA+GSPQ+LMLSG I VVL+ VG+GM+DN
Sbjct: 275 NQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADN 334
Query: 199 PMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQL 256
PMN I VPS P+E SLIQ VGIT+ G Y+EA++G G SP YG+ S K
Sbjct: 335 PMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTG---FGQSPESIHTHYGIMSNKNELF 391
Query: 257 SKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 316
S +P KQR PEA I K AF G FILEK+ P+S GHL L N +DNPSVT
Sbjct: 392 STIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVT 451
Query: 317 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYESMSVPILVNMTASAPVNLLPRHSN 375
FNYFK P DLQRCV+ I + K++ S F + + + +V +++++ A +NL P+ N
Sbjct: 452 FNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLN 511
Query: 376 ASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 435
+ S+ QFC+DTV+TIWHYHGGC VGKVV + KVLGVD LRVIDGSTF SPGTNPQAT
Sbjct: 512 DTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQAT 571
Query: 436 VMMLGRYMGVRILSERLAS 454
+MM+GRYMGV+IL ERL +
Sbjct: 572 MMMMGRYMGVKILRERLGN 590
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Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1 | Back alignment and function description |
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| >sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1 | Back alignment and function description |
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| >sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1 | Back alignment and function description |
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| >sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1 | Back alignment and function description |
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| >sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA PE=3 SV=1 | Back alignment and function description |
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| >sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| 359474260 | 578 | PREDICTED: protein HOTHEAD isoform 1 [Vi | 0.938 | 0.743 | 0.790 | 0.0 | |
| 356514078 | 581 | PREDICTED: protein HOTHEAD-like [Glycine | 0.925 | 0.729 | 0.776 | 0.0 | |
| 224053991 | 577 | predicted protein [Populus trichocarpa] | 0.932 | 0.740 | 0.794 | 0.0 | |
| 356563226 | 581 | PREDICTED: protein HOTHEAD-like [Glycine | 0.923 | 0.728 | 0.771 | 0.0 | |
| 359474262 | 568 | PREDICTED: protein HOTHEAD isoform 2 [Vi | 0.917 | 0.739 | 0.772 | 0.0 | |
| 357481761 | 580 | Choline dehydrogenase [Medicago truncatu | 0.921 | 0.727 | 0.740 | 0.0 | |
| 449452496 | 578 | PREDICTED: protein HOTHEAD-like [Cucumis | 0.925 | 0.733 | 0.743 | 0.0 | |
| 449495903 | 580 | PREDICTED: protein HOTHEAD-like [Cucumis | 0.925 | 0.731 | 0.743 | 0.0 | |
| 255537255 | 548 | glucose-methanol-choline (gmc) oxidoredu | 0.864 | 0.722 | 0.75 | 0.0 | |
| 357481759 | 580 | Choline dehydrogenase [Medicago truncatu | 0.934 | 0.737 | 0.708 | 0.0 |
| >gi|359474260|ref|XP_002282510.2| PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera] gi|297742610|emb|CBI34759.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/439 (79%), Positives = 390/439 (88%), Gaps = 9/439 (2%)
Query: 28 IMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKI 87
+ VGWD +V ESY+WVEKVVAF+PPMRQWQSAVRDGL+EVGVLPYNGFTYDH+YGTKI
Sbjct: 141 VEEVGWDSGMVKESYEWVEKVVAFKPPMRQWQSAVRDGLLEVGVLPYNGFTYDHIYGTKI 200
Query: 88 GGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA 147
GGTIFD +G RHTAADLL+YANP+GLT+LLHA+VHK+ FR +GK RPVAHGV+FRD G
Sbjct: 201 GGTIFDPDGHRHTAADLLQYANPTGLTVLLHATVHKITFRRRGKVRPVAHGVIFRDVLGK 260
Query: 148 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP 199
KH+AYLK KNEIIVS+GALGSPQLLMLSG AHNI++VLD P+VGQ MSDNP
Sbjct: 261 KHKAYLKRDSKNEIIVSSGALGSPQLLMLSGVGPAQQIKAHNISLVLDLPMVGQRMSDNP 320
Query: 200 MNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKV 259
MNAIF+PSP+PVEVSLIQVVGIT G+YIEAASGENFA P RD+GMFSPKIGQL+ V
Sbjct: 321 MNAIFIPSPLPVEVSLIQVVGITHSGTYIEAASGENFAASGPQ-RDFGMFSPKIGQLATV 379
Query: 260 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 319
PPKQRTPEAIA+AI++M LD+ AFRGGFILEK+MGP+STGHLEL++RNPNDNPSVTFNY
Sbjct: 380 PPKQRTPEAIAKAIDSMSKLDETAFRGGFILEKIMGPISTGHLELQSRNPNDNPSVTFNY 439
Query: 320 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 379
FKEPEDLQRCV G+ IEKIIESK+FS+FKY+ +SVP L+NMT + PVNL+PRH NASTS
Sbjct: 440 FKEPEDLQRCVNGMQIIEKIIESKAFSQFKYDYLSVPALINMTLNFPVNLVPRHDNASTS 499
Query: 380 LEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 439
LEQFC+DTVMTIWHYHGGCQVG VVDHDYKVLGVDALRVIDGSTF SPGTNPQATVMML
Sbjct: 500 LEQFCKDTVMTIWHYHGGCQVGSVVDHDYKVLGVDALRVIDGSTFNASPGTNPQATVMML 559
Query: 440 GRYMGVRILSERLASNDSK 458
GRYMG+RILSERLAS+ SK
Sbjct: 560 GRYMGLRILSERLASDLSK 578
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514078|ref|XP_003525734.1| PREDICTED: protein HOTHEAD-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224053991|ref|XP_002298074.1| predicted protein [Populus trichocarpa] gi|222845332|gb|EEE82879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356563226|ref|XP_003549865.1| PREDICTED: protein HOTHEAD-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|359474262|ref|XP_003631426.1| PREDICTED: protein HOTHEAD isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357481761|ref|XP_003611166.1| Choline dehydrogenase [Medicago truncatula] gi|355512501|gb|AES94124.1| Choline dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449452496|ref|XP_004143995.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449495903|ref|XP_004159980.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255537255|ref|XP_002509694.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223549593|gb|EEF51081.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357481759|ref|XP_003611165.1| Choline dehydrogenase [Medicago truncatula] gi|355512500|gb|AES94123.1| Choline dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 458 | ||||||
| TAIR|locus:2034705 | 572 | AT1G12570 [Arabidopsis thalian | 0.897 | 0.718 | 0.614 | 1e-139 | |
| TAIR|locus:2173068 | 586 | AT5G51950 [Arabidopsis thalian | 0.910 | 0.711 | 0.571 | 1.1e-126 | |
| TAIR|locus:2078441 | 577 | AT3G56060 [Arabidopsis thalian | 0.914 | 0.726 | 0.549 | 4.9e-124 | |
| TAIR|locus:2032627 | 594 | HTH "HOTHEAD" [Arabidopsis tha | 0.923 | 0.712 | 0.527 | 1.3e-114 | |
| TAIR|locus:2173053 | 582 | AT5G51930 [Arabidopsis thalian | 0.877 | 0.690 | 0.528 | 8.4e-113 | |
| TAIR|locus:2032642 | 552 | AT1G73050 [Arabidopsis thalian | 0.430 | 0.356 | 0.5 | 1.8e-90 | |
| UNIPROTKB|Q945K2 | 563 | MDL2 "(R)-mandelonitrile lyase | 0.410 | 0.333 | 0.425 | 8.6e-73 | |
| TAIR|locus:2035830 | 501 | AT1G14190 [Arabidopsis thalian | 0.384 | 0.351 | 0.441 | 9.8e-73 | |
| TAIR|locus:505006121 | 503 | AT1G14185 [Arabidopsis thalian | 0.432 | 0.393 | 0.433 | 4.2e-72 | |
| UNIPROTKB|G4N440 | 625 | MGG_16853 "Uncharacterized pro | 0.672 | 0.492 | 0.292 | 4.9e-16 |
| TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 273/444 (61%), Positives = 322/444 (72%)
Query: 28 IMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKI 87
+ ++GWD L NESYQWVE VAF+PPM +WQ+AVRDGL+E G++P NGFTYDH+ GTK
Sbjct: 140 VRNMGWDGALANESYQWVEAKVAFQPPMGRWQTAVRDGLLEAGIVPNNGFTYDHINGTKF 199
Query: 88 GGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA 147
GGTIFD+NG RHTAADLLEYA+P G+T+LLHA+VH++LFR +G +P+A+GVV+RD TG
Sbjct: 200 GGTIFDRNGNRHTAADLLEYADPKGITVLLHATVHRILFRTRGTTKPIANGVVYRDRTGQ 259
Query: 148 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP 199
HRAYLK G +EII+SAG LGSPQLLMLSG A NITVV+DQP VGQGM DNP
Sbjct: 260 AHRAYLKEGALSEIILSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMYDNP 319
Query: 200 MNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGG------SPSPRDY-GMFSPK 252
MNA+FVPSPVPVEVSLI+VVGIT G+Y+EAA GENF GG S S RDY MFSP+
Sbjct: 320 MNAVFVPSPVPVEVSLIEVVGITGEGTYVEAAGGENFGGGGGGSSGSSSTRDYYAMFSPR 379
Query: 253 IGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDN 312
+ E+ K F+GGF+LEKVMGP+STGHLEL+TRNP DN
Sbjct: 380 A--------------TLLESNSMTKLSSAQPFQGGFLLEKVMGPLSTGHLELKTRNPKDN 425
Query: 313 PSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYESMSVPILVNMTASAPVNLLPR 372
P VTFNYF+ P+DL+RCV+G Y +S L+N+TAS PVNL P
Sbjct: 426 PIVTFNYFQHPDDLKRCVRGIQTIERVVQSKAFSRYKYADVSFEYLLNLTASTPVNLRPP 485
Query: 373 HSNASTSL----EQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSP 428
S SL E+FC+ TV TIWHYHGGC VG+VVD DYKV+G+D LRVID ST Y P
Sbjct: 486 RSGPGASLPPSAEEFCQHTVTTIWHYHGGCVVGRVVDGDYKVIGIDRLRVIDMSTVGYCP 545
Query: 429 GTNPQATVMMLGRYMGVRILSERL 452
GTNPQATVMMLGRYMGV+IL ERL
Sbjct: 546 GTNPQATVMMLGRYMGVKILRERL 569
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| TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)] | Back alignment and assigned GO terms |
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| TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4N440 MGG_16853 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 458 | |||
| PLN02785 | 587 | PLN02785, PLN02785, Protein HOTHEAD | 0.0 | |
| pfam05199 | 139 | pfam05199, GMC_oxred_C, GMC oxidoreductase | 2e-26 | |
| COG2303 | 542 | COG2303, BetA, Choline dehydrogenase and related f | 6e-26 | |
| TIGR01810 | 532 | TIGR01810, betA, choline dehydrogenase | 3e-18 | |
| PRK02106 | 560 | PRK02106, PRK02106, choline dehydrogenase; Validat | 1e-13 | |
| PRK02106 | 560 | PRK02106, PRK02106, choline dehydrogenase; Validat | 8e-13 | |
| TIGR03970 | 487 | TIGR03970, Rv0697, dehydrogenase, Rv0697 family | 1e-10 | |
| pfam00732 | 218 | pfam00732, GMC_oxred_N, GMC oxidoreductase | 7e-07 |
| >gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD | Back alignment and domain information |
|---|
Score = 622 bits (1606), Expect = 0.0
Identities = 263/435 (60%), Positives = 325/435 (74%), Gaps = 13/435 (2%)
Query: 28 IMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKI 87
I GWD +LVNESY WVE+ + P + WQ+A+RD L+EVGV P+NGFTYDH+YGTK+
Sbjct: 150 IQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKV 209
Query: 88 GGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA 147
GGTIFD+ G+RHTAA+LL NP+ L +LLHA+V K++F GK RP A GV+F+D G
Sbjct: 210 GGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGK-RPRATGVIFKDENGN 268
Query: 148 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP 199
+H+A+L N +EII+SAGA+GSPQ+L+LSG H I VVL VG+GM+DNP
Sbjct: 269 QHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNP 328
Query: 200 MNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPR-DYGMFSPKIGQLSK 258
MN+IFVPS PVE SLIQ VGIT+ G YIEA+SG F S +G+ S +IGQLS
Sbjct: 329 MNSIFVPSKAPVEQSLIQTVGITKMGVYIEASSG--FGQSPDSIHCHHGIMSAEIGQLST 386
Query: 259 VPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 318
+PPKQRTPEAI I K L AF GGFILEK+ GP+STGHL L N +DNPSVTFN
Sbjct: 387 IPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFN 446
Query: 319 YFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYESMSVPILVNMTASAPVNLLPRHSNAS 377
YFK P+DLQRCV GI TIEKI+++ F+ F + + ++ ++NM+ A +NL+P+H+N +
Sbjct: 447 YFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDT 506
Query: 378 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 437
SLEQFC+DTV+TIWHYHGGC VGKVVD +YKVLGV LRVIDGSTF SPGTNPQATVM
Sbjct: 507 KSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVM 566
Query: 438 MLGRYMGVRILSERL 452
M+GRYMGV+IL ERL
Sbjct: 567 MMGRYMGVKILRERL 581
|
Length = 587 |
| >gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase | Back alignment and domain information |
|---|
| >gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family | Back alignment and domain information |
|---|
| >gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 100.0 | |
| PLN02785 | 587 | Protein HOTHEAD | 100.0 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 100.0 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 100.0 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 100.0 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 100.0 | |
| PF05199 | 144 | GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 | 100.0 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 99.97 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.62 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 96.33 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.18 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 95.94 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 95.81 | |
| PRK07121 | 492 | hypothetical protein; Validated | 95.81 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 95.63 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 95.41 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 95.18 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 94.94 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 94.91 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 94.84 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.67 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 94.61 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 94.61 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 94.61 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.5 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.42 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 94.17 | |
| TIGR01816 | 565 | sdhA_forward succinate dehydrogenase, flavoprotein | 94.1 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.06 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 93.85 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.84 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 93.46 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 93.34 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.31 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 93.16 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 92.9 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 92.85 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 92.72 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 92.7 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 92.6 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 92.34 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 92.33 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 92.25 | |
| PLN02815 | 594 | L-aspartate oxidase | 92.23 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 92.17 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 92.16 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 92.02 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 91.67 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 91.54 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 91.5 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 91.49 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 91.48 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 91.2 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 91.04 | |
| TIGR03377 | 516 | glycerol3P_GlpA glycerol-3-phosphate dehydrogenase | 90.47 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 90.4 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 89.8 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 89.77 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 89.66 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 89.36 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 89.28 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 88.9 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 88.7 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 87.77 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 87.56 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 87.46 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 87.42 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 85.11 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 84.34 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 84.21 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 81.99 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 81.74 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 81.15 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 80.88 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 80.8 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 80.18 |
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-76 Score=597.32 Aligned_cols=413 Identities=36% Similarity=0.515 Sum_probs=314.1
Q ss_pred HHhcc-cCCCCcccccC-----CCCCChhhhhhHHHhhhccccCCC------------------CcchhHHHHHHHHHHc
Q 012707 14 AVASM-PASTHALLLIM-----SVGWDERLVNESYQWVEKVVAFEP------------------PMRQWQSAVRDGLVEV 69 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~-----~~gWs~~~l~py~~~~E~~~~~~~------------------~~~~~~~~~~~~~~~~ 69 (458)
.+|+| |.|++.+|||. ++||+|++++|||+|+|+.....+ ...+....|.++.+++
T Consensus 145 ~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~ 224 (623)
T KOG1238|consen 145 VLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEI 224 (623)
T ss_pred cccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchhhHhHHhHHhc
Confidence 67888 99999999997 789999999999999999854322 2345678899999999
Q ss_pred CCCCCCCCcccCCCceeeeeeEE---CCCCeeecHHH-hHh-hc-CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe
Q 012707 70 GVLPYNGFTYDHMYGTKIGGTIF---DQNGQRHTAAD-LLE-YA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 143 (458)
Q Consensus 70 G~~~~n~~~~d~~~g~~~g~~~~---~~~g~R~s~~~-~l~-~~-~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~ 143 (458)
|.. . .|.++....|.... .++|.|+|++. |+. .. .|+||++..++.|+||++|..+ ++|.||++..
T Consensus 225 G~~-~----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~---~~a~gv~~~~ 296 (623)
T KOG1238|consen 225 GGS-I----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG---KRAKGVEFVR 296 (623)
T ss_pred CCC-c----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC---ceEEEEEEEe
Confidence 953 2 34444444443221 27999999876 875 44 4899999999999999999765 4899999987
Q ss_pred CCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCCCceEeecCCCCccccH
Q 012707 144 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL 215 (458)
Q Consensus 144 ~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~~~ 215 (458)
..|+.++++ +.||||||||||+||||||+|| ++||+++.|||+||+|||||+..+++.....+.....
T Consensus 297 ~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~ 372 (623)
T KOG1238|consen 297 DGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSL 372 (623)
T ss_pred cCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCCCccccc
Confidence 337888886 7999999999999999999999 9999999999999999999999987765555543333
Q ss_pred HHHhccchhhhHHhhccCCcccCCCCCCCccCccCccccc----cc---------cCCCCC------CCHHHHHHHHHhh
Q 012707 216 IQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ----LS---------KVPPKQ------RTPEAIAEAIENM 276 (458)
Q Consensus 216 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~~~------~~~~~~~~~~~~~ 276 (458)
.+..+......|+...+|+ +.... ...++++...... +. .+.... ...++.+.++...
T Consensus 373 ~~~~~~~~~~~yl~~~~G~-~~~~~--~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 449 (623)
T KOG1238|consen 373 IRLVGITTVGQYLEGGSGP-LASPG--VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFGEL 449 (623)
T ss_pred cccccchHHHHHHHcCCCC-cccCc--ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHhhhhh
Confidence 3334444556677766666 22211 0112222211110 00 000000 0001222121111
Q ss_pred hcCCCCCCCceeEEeeecccccceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccC--c
Q 012707 277 KALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM--S 354 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~p~srG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~ 354 (458)
. . ...+.+++.+++|.|||+|.|.|+||.+.|.|++||+++|.|++.++++++.+.++.++.+|+++..+.. +
T Consensus 450 ~---~--~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~ 524 (623)
T KOG1238|consen 450 T---N--SDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKP 524 (623)
T ss_pred h---c--CceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcccc
Confidence 1 0 1124567788999999999999999999999999999999999999999999999999999999886431 2
Q ss_pred hhhhhhcccCCCCcCCCCCCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeeeccCCceEeecccCCCCC
Q 012707 355 VPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSP 428 (458)
Q Consensus 355 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nL~V~DaSv~P~~~ 428 (458)
.++|... ...+|++|+||+|....|.||++|||+|| +|||+++|||||+|||||||||||.+|
T Consensus 525 ~~~c~~~-----------~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~p 593 (623)
T KOG1238|consen 525 VPGCDLL-----------AFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESP 593 (623)
T ss_pred CCCcccc-----------cCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCC
Confidence 2333211 24689999999999999999999999999 899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012707 429 GTNPQATVMMLGRYMGVRILSERLASNDS 457 (458)
Q Consensus 429 ~~np~~ti~alA~r~A~~i~~~~~~~~~~ 457 (458)
++||++|+||||||+|++|++++.+....
T Consensus 594 sgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 594 SGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999888887665544
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
| >PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
| >TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit | Back alignment and domain information |
|---|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 458 | ||||
| 1ju2_A | 536 | Crystal Structure Of The Hydroxynitrile Lyase From | 5e-75 | ||
| 3gdn_A | 521 | Almond Hydroxynitrile Lyase In Complex With Benzald | 6e-75 | ||
| 3red_A | 521 | 3.0 A Structure Of The Prunus Mume Hydroxynitrile L | 2e-73 | ||
| 3nne_A | 546 | Crystal Structure Of Choline Oxidase S101a Mutant L | 5e-14 | ||
| 2jbv_A | 546 | Crystal Structure Of Choline Oxidase Reveals Insigh | 6e-14 | ||
| 3ljp_A | 546 | Crystal Structure Of Choline Oxidase V464a Mutant L | 2e-13 | ||
| 3fim_B | 566 | Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu | 6e-08 | ||
| 3q9t_A | 577 | Crystal Structure Analysis Of Formate Oxidase Lengt | 2e-04 |
| >pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 | Back alignment and structure |
|
| >pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 | Back alignment and structure |
| >pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 | Back alignment and structure |
| >pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 | Back alignment and structure |
| >pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 | Back alignment and structure |
| >pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 | Back alignment and structure |
| >pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 | Back alignment and structure |
| >pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 | Back alignment and structure |
|---|
Score = 418 bits (1077), Expect = e-143
Identities = 160/433 (36%), Positives = 239/433 (55%), Gaps = 48/433 (11%)
Query: 32 GWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI 91
WD LVN++Y+WVE + ++P + WQS + +E GV P +GF+ DH GT+I G+
Sbjct: 128 DWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGST 187
Query: 92 FDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRA 151
FD G RH A +LL N + L + +HASV K++F A GV++RD+ G H+A
Sbjct: 188 FDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLT--ATGVIYRDSNGTPHQA 245
Query: 152 YLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAI 203
+++ K E+IVSAG +G+PQLL+LSG + NI VVL P VGQ + DNP N I
Sbjct: 246 FVR--SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFI 303
Query: 204 FVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQ 263
+ P P+E +++ V+GI+ + + + F+ + +G F P
Sbjct: 304 NILPPNPIEPTIVTVLGIS--NDFYQCS----FSSLPFTTPPFGFF-----------PSS 346
Query: 264 RTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKE 322
P P KV GP+S G L L++ N +P+V FNY+
Sbjct: 347 SYP--------------LPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSN 392
Query: 323 PEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQ 382
DL CV G+ I +++ + + +K E + N+ LP+ + E
Sbjct: 393 LTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKDQTDDAAFET 448
Query: 383 FCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRY 442
FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF Y+P ++PQ +MLGRY
Sbjct: 449 FCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRY 508
Query: 443 MGVRILSERLASN 455
+G++IL ER AS+
Sbjct: 509 VGIKILQERSASD 521
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 | Back alignment and structure |
|---|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 | Back alignment and structure |
|---|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 | Back alignment and structure |
|---|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 | Back alignment and structure |
|---|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 | Back alignment and structure |
|---|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 100.0 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 100.0 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 100.0 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 100.0 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 100.0 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 100.0 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 100.0 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 100.0 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 100.0 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 100.0 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 100.0 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.67 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 94.94 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 94.61 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 94.22 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 94.0 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 93.53 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 93.34 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 92.79 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 92.5 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 92.22 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 92.0 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 91.01 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 90.4 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 90.35 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 90.34 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 89.72 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 88.96 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 87.48 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 86.9 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 86.81 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 85.95 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 85.76 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 84.63 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 83.15 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 82.34 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 81.73 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 80.98 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 80.91 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 80.91 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 80.67 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 80.53 |
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-74 Score=602.97 Aligned_cols=409 Identities=22% Similarity=0.313 Sum_probs=298.2
Q ss_pred HHhcc-cCCCCccccc------CCCCCChhhhhhHHHhhhccccC-------------------------CCCcchhHHH
Q 012707 14 AVASM-PASTHALLLI------MSVGWDERLVNESYQWVEKVVAF-------------------------EPPMRQWQSA 61 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~------~~~gWs~~~l~py~~~~E~~~~~-------------------------~~~~~~~~~~ 61 (458)
.+|.| +.|+++.||| +++||+|++|+|||+|+|+.... .+...+....
T Consensus 89 ~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~~~~~~~~ 168 (566)
T 3fim_B 89 SVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDR 168 (566)
T ss_dssp GTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEBSCSSCCTHHHH
T ss_pred cccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeeecCCCCCHHHHH
Confidence 56788 8899999987 47899999999999999997521 1123567889
Q ss_pred HHHHHHHc--CCCCCCCCcccCCCceeeeeeEEC---CCCeeecHHH-hHh-hcCCCCeEEEcccEEEEEEEecCCCCCC
Q 012707 62 VRDGLVEV--GVLPYNGFTYDHMYGTKIGGTIFD---QNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARP 134 (458)
Q Consensus 62 ~~~~~~~~--G~~~~n~~~~d~~~g~~~g~~~~~---~~g~R~s~~~-~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~ 134 (458)
|.++++++ |++ .+ .|.+++...|+..++ .+|+|++++. ||. +..|+||+|++++.|+||+++....+..
T Consensus 169 ~~~a~~~~~~G~~-~~---~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~ 244 (566)
T 3fim_B 169 VLATTQEQSEEFF-FN---PDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLP 244 (566)
T ss_dssp HHHHHHHTHHHHC-BC---SCGGGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEE
T ss_pred HHHHHHHHhcCCC-cc---CCCCCCCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCC
Confidence 99999999 974 32 234444444443221 4899999987 875 7789999999999999999981000013
Q ss_pred eEEEEEEEeCCC-ceeEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCCCceEee
Q 012707 135 VAHGVVFRDATG-AKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFV 205 (458)
Q Consensus 135 ~a~GV~~~~~~g-~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~ 205 (458)
+|+||+|.+.+| +.++++ ++||||||||+|+||||||+|| ++||++++|||+||+|||||+.+.+.+
T Consensus 245 rA~GVe~~~~~g~~~~~v~----A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~~~~~~ 320 (566)
T 3fim_B 245 AFRCVEYAEQEGAPTTTVC----AKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAF 320 (566)
T ss_dssp ECCEEEEESSTTSCCEEEE----EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEECCEE
T ss_pred EEEEEEEEECCCceEEEEE----eeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCccceEEE
Confidence 899999987556 777776 6799999999999999999999 899999999999999999999987777
Q ss_pred cCCCCcccc-H-H-HHhccchhhhHHhhccCCcccCCCCCCCccCccCccc--cccccCC---CCCCCHHHHHHHHHhh-
Q 012707 206 PSPVPVEVS-L-I-QVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI--GQLSKVP---PKQRTPEAIAEAIENM- 276 (458)
Q Consensus 206 ~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~- 276 (458)
..+.+.... . . ..........|.....|+ +..... ...+++.... ..+.... .....+++. .++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~-~~~~~~~ 396 (566)
T 3fim_B 321 FVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGP-LTALIA--NHLAWLRLPSNSSIFQTFPDPAAGPNSAHWE-TIFSNQW 396 (566)
T ss_dssp EESCSCSSGGGGTCHHHHHHHHHHHHHHSCSG-GGCCSC--SEEEEECCCTTCGGGGTSCCCSSSTTSCSEE-EEEESSC
T ss_pred EeCCCcccchhhcChHHHHHHHHHHHhcCCCC-cccChh--hheeeeccccchhhhhhhccccccCCCCCEE-EEecccc
Confidence 665443211 0 0 000011123455556666 443210 1111211100 0000000 000011110 000000
Q ss_pred --hcC-CCCCCCceeEEeeecccccceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccC
Q 012707 277 --KAL-DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM 353 (458)
Q Consensus 277 --~~~-~~~~~~~~~~~~~l~~p~srG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 353 (458)
... ........++...+++|+|||+|+|+|+||++.|.|+++|+++|.|++.++++++++++|+++++++.+...+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~- 475 (566)
T 3fim_B 397 FHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRP- 475 (566)
T ss_dssp CCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTTTEEEE-
T ss_pred hhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccCCccccc-
Confidence 000 0001123456678899999999999999999999999999999999999999999999999999988876432
Q ss_pred chhhhhhcccCCCCcCCC--CCCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeeeccCCceEeecccCC
Q 012707 354 SVPILVNMTASAPVNLLP--RHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFY 425 (458)
Q Consensus 354 ~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nL~V~DaSv~P 425 (458)
..| ....+|++|++|+|+...+.||++|||||| +|||++|||||++|||||||||||
T Consensus 476 ---------------~~P~~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P 540 (566)
T 3fim_B 476 ---------------FDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILP 540 (566)
T ss_dssp ---------------SSGGGSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGCC
T ss_pred ---------------cCCCcccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccccCC
Confidence 122 135689999999999999999999999998 799999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH
Q 012707 426 YSPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 426 ~~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
+++++||++|+||||||+||.|+++
T Consensus 541 ~~~~~n~~~~~~~iaekaAd~I~~~ 565 (566)
T 3fim_B 541 FAPNAHTQGPIYLVGKQGADLIKAD 565 (566)
T ss_dssp SCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988764
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 458 | ||||
| d1ju2a2 | 170 | d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond | 6e-41 | |
| d1ju2a1 | 351 | c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { | 3e-24 | |
| d1ju2a1 | 351 | c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { | 2e-10 | |
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 2e-13 | |
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 9e-05 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 4e-09 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 2e-04 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 2e-08 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 3e-06 | |
| d1cf3a2 | 196 | d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus | 1e-07 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 2e-07 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 3e-07 | |
| d1gpea2 | 196 | d.16.1.1 (A:329-524) Glucose oxidase {Penicillium | 6e-07 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 3e-06 | |
| d1kdga2 | 181 | d.16.1.1 (A:513-693) Flavoprotein domain of flavoc | 3e-04 |
| >d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FAD-linked reductases, C-terminal domain superfamily: FAD-linked reductases, C-terminal domain family: GMC oxidoreductases domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Score = 141 bits (357), Expect = 6e-41
Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 36/204 (17%)
Query: 195 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG 254
+ DNP N I + P P+E +++ V+GI+ Y + S F +
Sbjct: 2 LHDNPRNFINILPPNPIEPTIVTVLGISN-DFYQCSFSSLPFTTPPFGFFPSSSYPL--- 57
Query: 255 QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNP 313
P KV GP+S G L L+ + N +P
Sbjct: 58 ---------------------------PNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSP 90
Query: 314 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 373
+V FNY+ DL CV G+ I +++ + + +K E + N+ LP+
Sbjct: 91 NVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKD 146
Query: 374 SNASTSLEQFCRDTVMTIWHYHGG 397
+ E FCR++V + WHYHGG
Sbjct: 147 QTDDAAFETFCRESVASYWHYHGG 170
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 | Back information, alignment and structure |
|---|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 | Back information, alignment and structure |
|---|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
| >d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 | Back information, alignment and structure |
|---|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
| >d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
| >d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 458 | |||
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 99.97 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 99.94 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 99.89 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 99.88 | |
| d1ju2a2 | 170 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 99.73 | |
| d1gpea2 | 196 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 99.69 | |
| d1kdga2 | 181 | Flavoprotein domain of flavocytochrome cellobiose | 99.68 | |
| d1cf3a2 | 196 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 99.68 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 96.91 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 96.39 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 96.1 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.06 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.25 | |
| d2f5va2 | 198 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 93.87 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 93.13 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.03 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 91.3 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 89.99 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 89.92 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 88.92 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 88.53 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 83.79 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 83.52 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 82.6 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.3 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 80.82 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 80.42 |
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=100.00 E-value=5.4e-38 Score=314.85 Aligned_cols=176 Identities=26% Similarity=0.309 Sum_probs=129.4
Q ss_pred HHhcc-cCCCCcccccC------CCCCChhhhhhHHHhhhccccC-----------------------------CCCcch
Q 012707 14 AVASM-PASTHALLLIM------SVGWDERLVNESYQWVEKVVAF-----------------------------EPPMRQ 57 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~------~~gWs~~~l~py~~~~E~~~~~-----------------------------~~~~~~ 57 (458)
.+|.| +.|+++.||+. +++|+|++++|||+|+|+.... .....+
T Consensus 109 ~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p 188 (391)
T d1gpea1 109 LINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSP 188 (391)
T ss_dssp GTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEBCCCCSSCBCT
T ss_pred ceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCcccccccccccccCH
Confidence 46677 88999999874 6789999999999999986431 012346
Q ss_pred hHHHHHHHHHHcCCCCCCCCcccCCCceeeee----eEECCCCeeecHHH-hH-hhcCCCCeEEEcccEEEEEEEecCCC
Q 012707 58 WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGG----TIFDQNGQRHTAAD-LL-EYANPSGLTLLLHASVHKVLFRIKGK 131 (458)
Q Consensus 58 ~~~~~~~~~~~~G~~~~n~~~~d~~~g~~~g~----~~~~~~g~R~s~~~-~l-~~~~r~nl~v~t~~~V~rI~~~~~~~ 131 (458)
..+.|.++++++|+... .+.+.+.+.++ ...+.++.|++++. ++ |.+.|+||+|+|++.|+||+|+++.
T Consensus 189 ~~~~~~~a~~~~G~~~~----~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~~~~- 263 (391)
T d1gpea1 189 IMKALMNTVSALGVPVQ----QDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTA- 263 (391)
T ss_dssp HHHHHHHHHHHTTCCBS----CCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEET-
T ss_pred HHHHHHHHHHhcCCcee----eccccCcccccccccceeeccccccchhhhccCccccchhhhhhccceeeEEeeeCCC-
Confidence 77889999999998532 12222222221 11124566777665 54 5778999999999999999998643
Q ss_pred CCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCC-ccCCCCCCC
Q 012707 132 ARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQP-LVGQGMSDN 198 (458)
Q Consensus 132 ~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p-~VG~nl~dH 198 (458)
++.||+||+|.+.+|.+++++ ++||||||||||+||+|||+|| ++||++++||| +||+|||||
T Consensus 264 ~g~ra~GV~~~~~~g~~~~v~----A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~Gvg~nl~dh 335 (391)
T d1gpea1 264 SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSRE 335 (391)
T ss_dssp TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCTCBSCGG
T ss_pred CCceEEeeEEecCCCeEEEEE----eCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCcccccccccC
Confidence 235899999987677777776 6789999999999999999999 66666666666 466666555
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
| >d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
| >d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
| >d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
| >d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
| >d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|