Citrus Sinensis ID: 012709
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 458 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9Q8 | 684 | Probable pectin methyltra | yes | no | 0.986 | 0.660 | 0.781 | 0.0 | |
| Q8GYW9 | 603 | Probable methyltransferas | no | no | 0.973 | 0.739 | 0.597 | 1e-163 | |
| Q3EC77 | 606 | Probable methyltransferas | no | no | 0.947 | 0.716 | 0.594 | 1e-155 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.923 | 0.692 | 0.385 | 2e-92 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.868 | 0.654 | 0.399 | 3e-91 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.914 | 0.672 | 0.400 | 1e-89 | |
| Q8VZV7 | 612 | Probable methyltransferas | no | no | 0.938 | 0.702 | 0.394 | 4e-89 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.899 | 0.604 | 0.385 | 1e-85 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.901 | 0.630 | 0.371 | 3e-81 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.873 | 0.576 | 0.351 | 6e-81 |
| >sp|Q9C9Q8|PMTT_ARATH Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/458 (78%), Positives = 403/458 (87%), Gaps = 6/458 (1%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGA
Sbjct: 231 MMMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGA 289
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HL SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+D
Sbjct: 290 HLLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGID 349
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++
Sbjct: 350 WDQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLN 405
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE
Sbjct: 406 QQDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEG 465
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDP
Sbjct: 466 RTRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDP 525
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+W
Sbjct: 526 SPPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNW 585
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
CE FPTYPRTYDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E
Sbjct: 586 CEPFPTYPRTYDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVE 645
Query: 420 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
AR T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 646 KARETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 683
|
May be involved in the synthesis of homogalacturonan. Required for normal cell adhesion and plant development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 576 bits (1484), Expect = e-163, Method: Compositional matrix adjust.
Identities = 273/457 (59%), Positives = 344/457 (75%), Gaps = 11/457 (2%)
Query: 1 MMMLEEEQISFRSAS-LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 59
+M+LEE QI+F S LIFDGV+DY+ QIAEMIGL +++ F AG+RT+LDIGCG+GSFG
Sbjct: 156 LMLLEENQITFHSDDGLIFDGVKDYAFQIAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFG 215
Query: 60 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119
AHL S ++ +CIA YE SGSQVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG+
Sbjct: 216 AHLVSLNVMPICIAEYETSGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGI 275
Query: 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179
WD KD +LLLEVDRVLKPGGYFV TSP + Q + + V + + +CW L
Sbjct: 276 TWDIKDAMLLLEVDRVLKPGGYFVLTSPTSKAQGNSPDTKKTSISTRVDELSKKICWSLS 335
Query: 180 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 239
QQDET +W+KT+ +CYSSR S P +C + V PYY PL PCI GT+++RWIPI+
Sbjct: 336 GQQDETFLWQKTADPNCYSSRSQASIP-VCKDDDSV--PYYHPLVPCISGTKSKRWIPIQ 392
Query: 240 ERRNWPSRAN-LNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDE 298
R SRA+ + +EL ++G+ PEEF ED + W++A+ N+WSLL+PLIFSDHPKRPGDE
Sbjct: 393 NR----SRASGTSLSELEIHGIKPEEFDEDIQVWRSALKNYWSLLTPLIFSDHPKRPGDE 448
Query: 299 DPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH 358
DP PP+ M+RN +DMNA +G N ALL +GKSVWVMNVVP N LP+ILDRGF G LH
Sbjct: 449 DPVPPFYMIRNAMDMNARYGNLNQALLNQGKSVWVMNVVPVKARNTLPIILDRGFTGALH 508
Query: 359 DWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLI 418
DWCE FPTYPRTYD++HA LL+ S RCS +D+F E+DRILRPEGWV++ D +I
Sbjct: 509 DWCEPFPTYPRTYDMLHANELLTHLSS--ERCSLMDLFLEMDRILRPEGWVVLSDKLGVI 566
Query: 419 ESARALTTRLKWDARVIEIESNSDERLLICQKPFFKR 455
E AR L R++W+ARVI+I+ SD+RLL+CQKP K+
Sbjct: 567 EMARTLAARVRWEARVIDIQDGSDQRLLVCQKPLLKK 603
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q3EC77|PMT5_ARATH Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 546 bits (1408), Expect = e-155, Method: Compositional matrix adjust.
Identities = 271/456 (59%), Positives = 338/456 (74%), Gaps = 22/456 (4%)
Query: 1 MMMLEEEQISFRSA-SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 59
+M+LEE QI+F S L+FDGV+DY+ QIAEMIGL +++ F AGVRT+LDIGCG+GSFG
Sbjct: 172 LMLLEENQITFHSEDGLVFDGVKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFG 231
Query: 60 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119
AHL S +L+ +CIA YEA+GSQVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG
Sbjct: 232 AHLVSLKLMPICIAEYEATGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGT 291
Query: 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179
WD KD +LLLEVDRVLKPGGYFV TSP Q L + + V + + +CW L
Sbjct: 292 TWDIKDAMLLLEVDRVLKPGGYFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLT 351
Query: 180 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 239
+QQDET +W+KTS +SCYSSR S P +C G+ V PYY PL PCI GT ++RWI I+
Sbjct: 352 AQQDETFLWQKTSDSSCYSSRSQASIP-LCKDGDSV--PYYHPLVPCISGTTSKRWISIQ 408
Query: 240 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDED 299
R + A L ++G K+A+ N+WSLL+PLIFSDHPKRPGDED
Sbjct: 409 NRS---AVAGTTSAGLEIHG-------------KSALKNYWSLLTPLIFSDHPKRPGDED 452
Query: 300 PSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHD 359
P PP+NM+RNV+DM+A FG N+ALL++GKS WVMNVVP N LP+ILDRGF GVLHD
Sbjct: 453 PLPPFNMIRNVMDMHARFGNLNAALLDEGKSAWVMNVVPVNARNTLPIILDRGFAGVLHD 512
Query: 360 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
WCE FPTYPRTYD++HA LL+ S RCS +D+F E+DRILRPEGWV++ D +IE
Sbjct: 513 WCEPFPTYPRTYDMLHANELLTHLSS--ERCSLMDLFLEMDRILRPEGWVVLSDKVGVIE 570
Query: 420 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKR 455
ARAL R++W+ARVI+++ SD+RLL+CQKPF K+
Sbjct: 571 MARALAARVRWEARVIDLQDGSDQRLLVCQKPFIKK 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/464 (38%), Positives = 267/464 (57%), Gaps = 41/464 (8%)
Query: 2 MMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
M+++ E+I+F F G + Y +A M+ N +RT LD+GCG SFG
Sbjct: 167 MVVKGEKINFPGGGTHFHYGADKYIASMANMLNFPNNVLNNGGRLRTFLDVGCGVASFGG 226
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
+L + E++TM +A + +Q+Q LERG+PA +G +K+LPYPS SF++ HC+RC +D
Sbjct: 227 YLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRID 286
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
W Q+DGILLLE+DRVL+PGGYF ++S P+A+ +++E+ + W + V +CW + +
Sbjct: 287 WLQRDGILLLELDRVLRPGGYFAYSS----PEAYAQDEEDLRIWREMSALVGRMCWTIAA 342
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIG-------GTRNR 233
++++TV+W+K CY R+PG+ P +C+ +D ++ Y ++ CI T+
Sbjct: 343 KRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTKGS 402
Query: 234 RWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPK 293
P WP+R LA +G + F +DTE W+ V +W LLSP I SD
Sbjct: 403 GLAP------WPARLTSPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSD--- 453
Query: 294 RPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGF 353
VRN++DM A G F +AL K K VWVMNVVP G N L +I DRG
Sbjct: 454 ------------TVRNIMDMKASMGSFAAAL--KEKDVWVMNVVPEDGPNTLKLIYDRGL 499
Query: 354 VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413
+G +H WCEAF TYPRTYDL+HA ++S + CS D+ E+DRILRP G+++IRD
Sbjct: 500 MGAVHSWCEAFSTYPRTYDLLHAWDIIS--DIKKRGCSAEDLLLEMDRILRPSGFILIRD 557
Query: 414 TARLIESARALTTRLKWDA----RVIEIESNSDERLLICQKPFF 453
+++ + L W+A E + +SD +LI QK +
Sbjct: 558 KQSVVDLVKKYLKALHWEAVETKTASESDQDSDNVILIVQKKLW 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 176/441 (39%), Positives = 260/441 (58%), Gaps = 43/441 (9%)
Query: 2 MMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFIL---AGVRTILDIGCGYGS 57
M+++ ++I+F F G + Y IA M + N N +L +RT+ D+GCG S
Sbjct: 164 MVVKGDKINFPGGGTHFHYGADKY---IASMANMLNYPNNVLNNGGRLRTVFDVGCGVAS 220
Query: 58 FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 117
FG +L S ++LTM +A + +Q+Q LERG+PA +G +K+LPYPS SF++ HC+RC
Sbjct: 221 FGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRC 280
Query: 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177
+DW Q+DGILLLE+DRVL+PGGYF ++S P+A+ +++E+ + W + VE +CW+
Sbjct: 281 RIDWLQRDGILLLELDRVLRPGGYFAYSS----PEAYAQDEEDLRIWREMSALVERMCWK 336
Query: 178 LVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGG-------T 230
+ +++++TV+W+K CY R+PG+ P +C ND ++ + ++ CI T
Sbjct: 337 IAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKT 396
Query: 231 RNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSD 290
+ P WP+R LA +G F +DTE W+ V +W LLSP I SD
Sbjct: 397 KGSGLAP------WPARLTSPPPRLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESD 450
Query: 291 HPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD 350
VRN++DM A G F +AL E K VWVMNVVP G N L +I D
Sbjct: 451 ---------------TVRNIMDMKASMGSFAAALKE--KDVWVMNVVPEDGPNTLKLIYD 493
Query: 351 RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410
RG +G +H WCEAF TYPRTYDL+HA ++S + CS +D+ E+DRILRP G++I
Sbjct: 494 RGLMGAVHSWCEAFSTYPRTYDLLHAWDIIS--DIKKKGCSEVDLLLEMDRILRPSGFII 551
Query: 411 IRDTARLIESARALTTRLKWD 431
IRD R+++ + L W+
Sbjct: 552 IRDKQRVVDFVKKYLKALHWE 572
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 178/444 (40%), Positives = 258/444 (58%), Gaps = 25/444 (5%)
Query: 2 MMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
M+ + E+ISF F G + Y IA M+ N+ +RT+LD+GCG SFGA
Sbjct: 172 MVEKGEKISFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGA 231
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
+L + +++TM +A + +Q+Q LERG+PA +G +K+LPYPS SF+ HC+RC +D
Sbjct: 232 YLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRID 291
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
W Q+DG+LLLE+DRVL+PGGYF ++S P+A+ +++EN K W + VE +CW +
Sbjct: 292 WLQRDGLLLLELDRVLRPGGYFAYSS----PEAYAQDEENLKIWKEMSALVERMCWRIAV 347
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGG-TRNRRWIPIE 239
++++TVVW+K CY R+PG+ P +C D ++ ++ CI +++
Sbjct: 348 KRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGS 407
Query: 240 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDED 299
WP+R + LA +G + F +DTE WK V ++W+L+S + S
Sbjct: 408 GLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKS---------- 457
Query: 300 PSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHD 359
N VRN++DM AH G F +AL K K VWVMNVV G N L +I DRG +G H+
Sbjct: 458 -----NTVRNIMDMKAHMGSFAAAL--KDKDVWVMNVVSPDGPNTLKLIYDRGLIGTNHN 510
Query: 360 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
WCEAF TYPRTYDL+HA + S CS D+ E+DRILRP G+VIIRD ++E
Sbjct: 511 WCEAFSTYPRTYDLLHAWSIFS--DIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVE 568
Query: 420 SARALTTRLKWDARVIEIESNSDE 443
S + L W+ E + S E
Sbjct: 569 SIKKYLQALHWETVASEKVNTSSE 592
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 271/467 (58%), Gaps = 37/467 (7%)
Query: 2 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
M++ ++I+F F +G + Y +A+M+ + +R +LD+GCG SFGA
Sbjct: 168 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 227
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
+L S +++ M +A + +Q+Q LERG+P+ +G +K+LPYPS SF++ HC+RC +D
Sbjct: 228 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 287
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
W Q+DGILLLE+DR+L+PGGYFV++S P+A+ + EN+K N + D + +CW++V+
Sbjct: 288 WLQRDGILLLELDRLLRPGGYFVYSS----PEAYAHDPENRKIGNAMHDLFKRMCWKVVA 343
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR----RWI 236
++D++V+W K SCY R PG P +C G+D ++ + ++ CI R RW
Sbjct: 344 KRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWS 403
Query: 237 PIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPG 296
+ WP R L GV PE+F EDTE W+ V +W LL P++
Sbjct: 404 GLVP---WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQK------- 453
Query: 297 DEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGV 356
N +RNV+DM+++ GGF +AL K VWVMNV+P + + +I DRG +G
Sbjct: 454 --------NSIRNVMDMSSNLGGFAAAL--NDKDVWVMNVMPVQSSPRMKIIYDRGLIGA 503
Query: 357 LHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 416
HDWCEAF TYPRT+DL+HA + E+ R CS D+ E+DRILRPEG+VIIRDT
Sbjct: 504 THDWCEAFDTYPRTFDLIHAWNTFT-ETQARG-CSFEDLLIEMDRILRPEGFVIIRDTTD 561
Query: 417 LIESARALTTRLKWDARVIEIE------SNSDERLLICQKPFFKRQA 457
I + T LKWD E S DE +LI +K + A
Sbjct: 562 NISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLWSLPA 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/462 (38%), Positives = 258/462 (55%), Gaps = 50/462 (10%)
Query: 5 EEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLF 63
E ++ F F G + Y QI++MI + N R +LDIGCG SFGA+L
Sbjct: 238 ENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNH----TRVVLDIGCGVASFGAYLM 293
Query: 64 SKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123
S+ +LTM IA + +Q+Q LERG+PAM+ +F +++L YPS +FD++HC+RC ++W +
Sbjct: 294 SRNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTR 353
Query: 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183
DGILLLEV+R+L+ GGYFVW + + K +++W + + LCW LV ++
Sbjct: 354 DDGILLLEVNRMLRAGGYFVWAA----QPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEG 409
Query: 184 ETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEER-- 241
+W+K +CY SR G P +C+ +D ++ +Y L+ CI TR IEE
Sbjct: 410 YIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACI--TR------IEENGY 461
Query: 242 ----RNWPSRA-----NLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHP 292
WP+R L ++ Y E F +++ WK + N+ + L H
Sbjct: 462 GANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNAL-------HW 514
Query: 293 KRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRG 352
K+ G +RNVLDM A FGGF +AL E WV+NV+P G N LP+I DRG
Sbjct: 515 KQIG----------LRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRG 564
Query: 353 FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412
+GV+HDWCE F TYPRTYDL+HA GL S+E R RC+ + E+DRILRP G V IR
Sbjct: 565 LLGVMHDWCEPFDTYPRTYDLLHAAGLFSIE---RKRCNMTTMMLEMDRILRPGGRVYIR 621
Query: 413 DTARLIESARALTTRLKWDARVIEIES--NSDERLLICQKPF 452
DT + + + ++W + E +S R+L+C+K F
Sbjct: 622 DTINVTSELQEIGNAMRWHTSLRETAEGPHSSYRVLLCEKRF 663
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/457 (37%), Positives = 251/457 (54%), Gaps = 44/457 (9%)
Query: 5 EEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRT--ILDIGCGYGSFGAH 61
E+++ F F G + Y QI++MI I G RT LDIGCG SFGA
Sbjct: 230 EKDKFVFPGGGTQFIHGADQYLDQISQMIP------DITFGSRTRVALDIGCGVASFGAF 283
Query: 62 LFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121
L + T+ +A + +Q+Q LERG+PAM+ FA+++L YPS SF+M+HC+RC ++W
Sbjct: 284 LMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINW 343
Query: 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN-QKRWNFVRDFVENLCWELVS 180
+ DGILLLEV+R+L+ GGYFVW + Q ++++N Q++W + D +CWEL+
Sbjct: 344 TRDDGILLLEVNRMLRAGGYFVWAA-----QPVYKHEDNLQEQWKEMLDLTNRICWELIK 398
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
++ VW+K SCY SR+ G+ P +C +D + +Y ++PCI + +
Sbjct: 399 KEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGY--GAN 456
Query: 241 RRNWPSRAN-----LNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRP 295
WP+R + L ++ Y E ++ W V ++ + F
Sbjct: 457 VSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWKEFK------ 510
Query: 296 GDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVG 355
+RNVLDM A FGGF +AL + G WVMN+VP G N LP+I DRG G
Sbjct: 511 -----------LRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQG 559
Query: 356 VLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415
+HDWCE F TYPRTYDL+HA L S+E + RC+ +I E+DR+LRP G V IRD+
Sbjct: 560 AMHDWCEPFDTYPRTYDLIHAAFLFSVE---KKRCNITNIMLEMDRMLRPGGHVYIRDSL 616
Query: 416 RLIESARALTTRLKWDARVIEIES--NSDERLLICQK 450
L++ + + + W A V + ++ R+LIC K
Sbjct: 617 SLMDQLQQVAKAIGWTAGVHDTGEGPHASVRILICDK 653
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 251/447 (56%), Gaps = 47/447 (10%)
Query: 20 GVEDYSHQIAEMIGLRNESNFILAG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS 78
G + Y Q+++M+ S+ +R +D+GCG SFGA+L S++++TM +A +
Sbjct: 282 GADQYLDQMSKMV-----SDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVH 336
Query: 79 GSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 138
+Q+Q LERG+PAM +FA+++L YPS +FD++HC+RC ++W + DGILLLE++R+L+
Sbjct: 337 ENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRA 396
Query: 139 GGYFVWTS-PLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCY 197
GGYF W + P+ + L +++W + + +LCW+LV ++ +W+K CY
Sbjct: 397 GGYFAWAAQPVYKHEPAL-----EEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCY 451
Query: 198 SSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRW---IPIEERRNWPSRANLNKNE 254
SR+ G+ P +C + +D ++ +Y L+PCI + + +P+ WP+R + +
Sbjct: 452 LSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPL-----WPARLHTPPDR 506
Query: 255 LAV-----YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRN 309
L Y E F +++ W +G + L +RN
Sbjct: 507 LQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKWKKMK-----------------LRN 549
Query: 310 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPR 369
VLDM A FGGF +AL + WV++VVP G N LP+I DRG +GV+HDWCE F TYPR
Sbjct: 550 VLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPR 609
Query: 370 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK 429
TYD +HA GL S+E R RC I E+DRILRP G IRD+ +++ + +T +
Sbjct: 610 TYDFLHASGLFSIE---RKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMG 666
Query: 430 WDARVIEIES--NSDERLLICQKPFFK 454
W + + ++ R+L C+K +
Sbjct: 667 WHTSLRDTSEGPHASYRILTCEKRLLR 693
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 458 | ||||||
| 225459280 | 696 | PREDICTED: probable pectin methyltransfe | 1.0 | 0.658 | 0.831 | 0.0 | |
| 449437010 | 690 | PREDICTED: probable pectin methyltransfe | 0.997 | 0.662 | 0.811 | 0.0 | |
| 356552890 | 693 | PREDICTED: probable pectin methyltransfe | 0.989 | 0.653 | 0.807 | 0.0 | |
| 356547964 | 694 | PREDICTED: probable pectin methyltransfe | 0.989 | 0.652 | 0.805 | 0.0 | |
| 297842599 | 683 | hypothetical protein ARALYDRAFT_895718 [ | 0.986 | 0.661 | 0.788 | 0.0 | |
| 157849752 | 662 | dehydration-responsive protein-related [ | 0.986 | 0.682 | 0.781 | 0.0 | |
| 356508083 | 690 | PREDICTED: probable pectin methyltransfe | 0.991 | 0.657 | 0.777 | 0.0 | |
| 255545748 | 656 | S-adenosylmethionine-dependent methyltra | 0.923 | 0.644 | 0.794 | 0.0 | |
| 356515784 | 690 | PREDICTED: probable pectin methyltransfe | 0.991 | 0.657 | 0.775 | 0.0 | |
| 42563316 | 684 | putative pectin methyltransferase QUA2 [ | 0.986 | 0.660 | 0.781 | 0.0 |
| >gi|225459280|ref|XP_002285784.1| PREDICTED: probable pectin methyltransferase QUA2 [Vitis vinifera] gi|302141967|emb|CBI19170.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/458 (83%), Positives = 421/458 (91%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMMLEEEQISFRSASL+FDGVEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGA
Sbjct: 239 MMMLEEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGA 298
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLFSKE+LTMCIA+YEASGSQVQLTLERGLPAMIGSF SKQ+PYP LSFDM+HCARCG+D
Sbjct: 299 HLFSKEILTMCIASYEASGSQVQLTLERGLPAMIGSFTSKQMPYPYLSFDMVHCARCGID 358
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDGILL+EVDRVL+PGGYFVWTSPLTN Q FLRNKE QKRWNFVR+F ENLCWE++S
Sbjct: 359 WDQKDGILLIEVDRVLRPGGYFVWTSPLTNAQRFLRNKEMQKRWNFVRNFAENLCWEMLS 418
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDET VWKKTSK SCY+SRKPGSGPSICSK +D ESPYYRPL+ CIGGT++ RWIPI+
Sbjct: 419 QQDETAVWKKTSKKSCYASRKPGSGPSICSKRHDGESPYYRPLEACIGGTQSSRWIPIKA 478
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSRA LN +EL +Y +H EEFAEDT++W A+ N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 479 RTTWPSRAKLNSSELQIYDLHSEEFAEDTQHWNLAIRNYWSLLSPLIFSDHPKRPGDEDP 538
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPP+NM+RNVLDMNAH GGFNSALLE GKSVWVMNVVPTIG N+LP+ILDRGFVGVLHDW
Sbjct: 539 SPPFNMLRNVLDMNAHLGGFNSALLEAGKSVWVMNVVPTIGHNYLPLILDRGFVGVLHDW 598
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPRTYD+VHA GLLSLE+ + RC+ LD+FTEIDR+LRPEGWVI+RDT LI+S
Sbjct: 599 CEAFPTYPRTYDMVHAAGLLSLETSQQRRCTMLDLFTEIDRLLRPEGWVILRDTVSLIDS 658
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 458
AR L TRLKWDARV+EIESNS+ERLL+CQKPFFKRQ +
Sbjct: 659 ARMLITRLKWDARVVEIESNSNERLLVCQKPFFKRQTN 696
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437010|ref|XP_004136285.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] gi|449496983|ref|XP_004160281.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/457 (81%), Positives = 414/457 (90%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMMLEEEQISFRSAS +FDGVEDYSHQIAEMIGLRNESNF GVRTILDIGCGYGSFGA
Sbjct: 233 MMMLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREIGVRTILDIGCGYGSFGA 292
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLFSK LLTMCIANYEASGSQVQLTLERGLPAM+GSF SKQLP+PSLS+DM+HCARCGVD
Sbjct: 293 HLFSKHLLTMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPFPSLSYDMVHCARCGVD 352
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WD KDG L+EVDRVLKPGGYFVWTSPLTN Q+ L KENQK WNF++DFVE LCWE+++
Sbjct: 353 WDNKDGRYLIEVDRVLKPGGYFVWTSPLTNTQSVLNKKENQKSWNFIQDFVEYLCWEMLN 412
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKTSK++CYSSRKP S P IC KG+D+ESPYYRPLQ CIGG ++RRW+PI E
Sbjct: 413 QQDETVVWKKTSKSNCYSSRKPDSSPPICGKGHDIESPYYRPLQDCIGGRKSRRWVPIYE 472
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R+ WPSRANLNK+ELA++G+ ++ A+D+ NWK AV N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 473 RQTWPSRANLNKSELALHGLALDDVADDSLNWKMAVKNYWSLLSPLIFSDHPKRPGDEDP 532
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
PPYNM+RNVLDMNAH+GGFNSALLE GKSVWVMNVVPT G NHLPMI+DRGF+GVLHDW
Sbjct: 533 LPPYNMLRNVLDMNAHYGGFNSALLEAGKSVWVMNVVPTDGPNHLPMIMDRGFIGVLHDW 592
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPR+YDLVHA GLLSLE+ + RCS LD+F+EIDR+LRPEGWVIIRDT LIES
Sbjct: 593 CEAFPTYPRSYDLVHAAGLLSLEAIKKPRCSMLDLFSEIDRLLRPEGWVIIRDTTTLIES 652
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
AR +TT+LKWDARVIEIE N+DER+LICQKPF KRQA
Sbjct: 653 ARTVTTQLKWDARVIEIEDNNDERVLICQKPFLKRQA 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552890|ref|XP_003544795.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/458 (80%), Positives = 406/458 (88%), Gaps = 5/458 (1%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES I AGVRTILDIGCGYGSFGA
Sbjct: 241 MMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYLIQAGVRTILDIGCGYGSFGA 300
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLF +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+D
Sbjct: 301 HLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGID 360
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+E DR+LKPGGYFVWTSPLTN RNKENQKRW F++DF LCWEL+S
Sbjct: 361 WDQKDGLLLIEADRLLKPGGYFVWTSPLTNA----RNKENQKRWKFIQDFTLTLCWELLS 416
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKTSK SCY+SRK GSGPS+C +G DVE+PYYR L CIGGT++ RW+PIE+
Sbjct: 417 QQDETVVWKKTSKKSCYASRKSGSGPSLCGRGIDVETPYYRELLNCIGGTQSSRWVPIEK 476
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSRANLN NELA+Y + P+E ED+++WK AV N+WSL+SPLIFSDHPKRPGDEDP
Sbjct: 477 RERWPSRANLNNNELAIYVLQPDELTEDSDSWKIAVQNYWSLMSPLIFSDHPKRPGDEDP 536
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM RNVLDMNAHFGGFNSALL+ KSVWVMNVVP G N+LP+I DRGFVGVLHDW
Sbjct: 537 SPPYNMFRNVLDMNAHFGGFNSALLQARKSVWVMNVVPISGLNYLPLIQDRGFVGVLHDW 596
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPRTYDLVHA GLLSLE+ +HRCS LD+F EIDRILRPEGWVIIRDT LIES
Sbjct: 597 CEAFPTYPRTYDLVHAAGLLSLET-EKHRCSILDLFIEIDRILRPEGWVIIRDTVPLIES 655
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 458
AR LT +LKWDARVIEIES+SD+RLLICQKPFFKRQAS
Sbjct: 656 ARPLTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 693
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547964|ref|XP_003542374.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/458 (80%), Positives = 407/458 (88%), Gaps = 5/458 (1%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES FI AGVRTILDIGCGYGSFGA
Sbjct: 242 MMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYFIQAGVRTILDIGCGYGSFGA 301
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLF +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+D
Sbjct: 302 HLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGID 361
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+E DR+LKPGGYFVWTSPLTN RNKENQKRW F++DF LCWEL+S
Sbjct: 362 WDQKDGLLLIEADRLLKPGGYFVWTSPLTNA----RNKENQKRWKFMQDFTLTLCWELLS 417
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKTSK SCY+SRK GSGPS+C +G DVE+PYYR LQ CIGG ++ RW+PIE+
Sbjct: 418 QQDETVVWKKTSKKSCYASRKSGSGPSLCGRGIDVETPYYRELQNCIGGIQSSRWVPIEK 477
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSRANLN N LA+YG+ P+E ED+++WKTA+ N+WSL+SPLIFSDHPKRPGDEDP
Sbjct: 478 RERWPSRANLNNNNLAIYGLQPDELTEDSDSWKTALQNYWSLMSPLIFSDHPKRPGDEDP 537
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM RNVLDMNAHFGGFNSALL+ KS WVMNVVP G N+LP+I DRG+VGVLHDW
Sbjct: 538 SPPYNMFRNVLDMNAHFGGFNSALLQARKSAWVMNVVPISGPNYLPLIQDRGYVGVLHDW 597
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPRTYDLVHA GLLSLE+ +HRCS LD+F EIDRILRPEGWVIIRDT LIES
Sbjct: 598 CEAFPTYPRTYDLVHAAGLLSLET-EQHRCSMLDLFIEIDRILRPEGWVIIRDTVPLIES 656
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 458
AR LT +LKWDARVIEIES+SD+RLLICQKPFFKRQAS
Sbjct: 657 ARPLTAQLKWDARVIEIESDSDQRLLICQKPFFKRQAS 694
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842599|ref|XP_002889181.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] gi|297335022|gb|EFH65440.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/458 (78%), Positives = 406/458 (88%), Gaps = 6/458 (1%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGA
Sbjct: 230 MMMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGA 288
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HL SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+D
Sbjct: 289 HLLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGID 348
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++
Sbjct: 349 WDQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLN 404
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE
Sbjct: 405 QQDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEG 464
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDP
Sbjct: 465 RTRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDP 524
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLHDW
Sbjct: 525 SPPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHDW 584
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
CE FPTYPRTYDLVHA+ LLSL++ R + C +DIFTEIDR+LRPEGWVIIRDT +L+E
Sbjct: 585 CEPFPTYPRTYDLVHADNLLSLQTSQRRKSCRLIDIFTEIDRLLRPEGWVIIRDTVQLVE 644
Query: 420 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
SARAL T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 645 SARALVTQLKWEARVIEVESSSEQRLLICQKPFTKRQS 682
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849752|gb|ABV89659.1| dehydration-responsive protein-related [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/458 (78%), Positives = 407/458 (88%), Gaps = 6/458 (1%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMM++++QISFRSAS +FD VEDYSHQIA+MIG++N+ NFI AGVRTILDIGCGYGSFGA
Sbjct: 209 MMMMDDDQISFRSASPMFDEVEDYSHQIAQMIGIKND-NFIEAGVRTILDIGCGYGSFGA 267
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HL SK+LLTMCIANYEASGSQVQLTLERGLPAMI SF S QLPYPSLSFDMLHC+ CG+D
Sbjct: 268 HLLSKQLLTMCIANYEASGSQVQLTLERGLPAMIASFVSTQLPYPSLSFDMLHCSTCGID 327
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+EVDRVLKPGGYFVWTSPLT+ RNKE+ KRWNFV DF E++CW L+S
Sbjct: 328 WDQKDGLLLVEVDRVLKPGGYFVWTSPLTSA----RNKEDIKRWNFVHDFAESICWTLLS 383
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQD+TVVWKKT K CYSSRKPG GPS+CSKG++VESPYYRPLQ C+GGTR+RRWIPIE
Sbjct: 384 QQDKTVVWKKTIKTKCYSSRKPGVGPSVCSKGHEVESPYYRPLQMCLGGTRSRRWIPIEG 443
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR+N+NK EL++YG+HPEE ED NWK V ++WSLLSPLIFSDHPKRPGDEDP
Sbjct: 444 RTRWPSRSNMNKTELSLYGLHPEEVGEDAANWKANVRDYWSLLSPLIFSDHPKRPGDEDP 503
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM+RNVLDMNA +GG N+ALLE KSVWVMNVVPT G NHLPMILDRGFVGVLHDW
Sbjct: 504 SPPYNMLRNVLDMNAQYGGLNAALLEAKKSVWVMNVVPTAGPNHLPMILDRGFVGVLHDW 563
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRH-RCSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
CEAFPTYPRTYDLVHA+ LLSL++ R CS L I TE+DR+LRPEGWVIIRDT +L+E
Sbjct: 564 CEAFPTYPRTYDLVHADSLLSLQTSQRKSSCSLLQILTEVDRLLRPEGWVIIRDTVQLVE 623
Query: 420 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
+ARALTT+LKW+ARVIE+ES+SD+RLLICQKPF KRQ+
Sbjct: 624 AARALTTQLKWEARVIEVESSSDQRLLICQKPFTKRQS 661
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508083|ref|XP_003522790.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/458 (77%), Positives = 406/458 (88%), Gaps = 4/458 (0%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMML+EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGA
Sbjct: 237 MMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGA 296
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLF +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+D
Sbjct: 297 HLFQSQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGID 356
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WD+KDGIL++E DR+L+PGGYFVWTSPLTN R+K++QKRW F++ F ENLCW+++S
Sbjct: 357 WDRKDGILMIEADRLLRPGGYFVWTSPLTNA----RDKDSQKRWKFIQSFAENLCWDMLS 412
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKTSK +CYSSRK S P +C +G DVESPYYR LQ CIGGT + RWI ++E
Sbjct: 413 QQDETVVWKKTSKRNCYSSRKNSSPPPLCGRGYDVESPYYRELQNCIGGTHSSRWISVQE 472
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR +LNK ELA++G+ +EFAED+E+WK AV N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 473 RETWPSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDP 532
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
PPYNM+RNVLDMNAH GGFNSA+L+ GKS+WVMNVVP G N+LP+I DRG+VGVLHDW
Sbjct: 533 PPPYNMLRNVLDMNAHVGGFNSAMLQAGKSIWVMNVVPLSGLNYLPLIQDRGYVGVLHDW 592
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPRTYDLVHA GLLSLE + C+ LD+F EIDR+LRPEGW+IIRDT LIES
Sbjct: 593 CEAFPTYPRTYDLVHAAGLLSLEFAQQRSCTMLDMFIEIDRLLRPEGWIIIRDTVPLIES 652
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 458
ARALTTRLKWDARV+EIES+SD+RLLICQKPFFKRQA+
Sbjct: 653 ARALTTRLKWDARVVEIESDSDQRLLICQKPFFKRQAN 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545748|ref|XP_002513934.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547020|gb|EEF48517.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/458 (79%), Positives = 400/458 (87%), Gaps = 35/458 (7%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMML++EQISFRSAS+ FD VEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGA
Sbjct: 234 MMMLDQEQISFRSASM-FDSVEDYSHQIAEMIGLRNESNFIKAGVRTILDIGCGYGSFGA 292
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLF ++LLTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLP+PSLSFDMLHCARCG+D
Sbjct: 293 HLFQRQLLTMCIANYEASGSQVQLTLERGLPAMIGSFTSKQLPFPSLSFDMLHCARCGID 352
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQ KEN KRW+FVR F EN+CWE++S
Sbjct: 353 WDQ----------------------------------KENLKRWDFVRGFAENMCWEMLS 378
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKT+K SCYSSRKPGSGPSICS+G+DVESPYYRPLQ CI GT++RRWIPIEE
Sbjct: 379 QQDETVVWKKTAKKSCYSSRKPGSGPSICSRGHDVESPYYRPLQACIAGTQSRRWIPIEE 438
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR++L+KNELA+YG+HPEEF ED+E+W+T++ N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 439 RTIWPSRSHLSKNELAIYGLHPEEFTEDSESWRTSISNYWSLLSPLIFSDHPKRPGDEDP 498
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM+RNVLDMNAHFGGFNSALLE GKSVWVMNVVPT G N+LPMILDRGFVGVLHDW
Sbjct: 499 SPPYNMLRNVLDMNAHFGGFNSALLEAGKSVWVMNVVPTSGPNYLPMILDRGFVGVLHDW 558
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPRTYDLVHA GLLSLE+G +HRC+ LDIFTE+DR+LRPEGW+II DTA LIES
Sbjct: 559 CEAFPTYPRTYDLVHAAGLLSLETGQQHRCTMLDIFTEVDRLLRPEGWMIIHDTAPLIES 618
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 458
ARALT RLKWDARVIEIESNSDERLLICQKPFFK+QAS
Sbjct: 619 ARALTARLKWDARVIEIESNSDERLLICQKPFFKKQAS 656
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515784|ref|XP_003526578.1| PREDICTED: probable pectin methyltransferase QUA2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/458 (77%), Positives = 404/458 (88%), Gaps = 4/458 (0%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMML+EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGA
Sbjct: 237 MMMLDEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGA 296
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HLF +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+D
Sbjct: 297 HLFQSQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGID 356
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WD+KDGIL++E DR+L+PGGYFVWTSPLTN R+K++QKRW ++ F ENLCW+++S
Sbjct: 357 WDRKDGILMIEADRLLRPGGYFVWTSPLTNA----RDKDSQKRWKIIQSFAENLCWDMLS 412
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKT K +CYSSRK S P +C KG DVESPYYR LQ CIGGT + RWI ++E
Sbjct: 413 QQDETVVWKKTIKRNCYSSRKNSSPPPLCGKGYDVESPYYRELQNCIGGTHSSRWISVKE 472
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R+ WPSR +LNK ELA++G+ +EFAED+E+WK AV N+WSLLSPLIFSDHPKRPGDEDP
Sbjct: 473 RQTWPSRDHLNKKELAIFGLQSDEFAEDSESWKAAVRNYWSLLSPLIFSDHPKRPGDEDP 532
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
PPYNM+RNVLDMNAH GGFNSALL+ GKS+WVMNVVP G N+LP+I DRG+VGVLHDW
Sbjct: 533 PPPYNMLRNVLDMNAHVGGFNSALLQAGKSLWVMNVVPLSGLNYLPLIQDRGYVGVLHDW 592
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIES 420
CEAFPTYPRTYDLVHA GLLSLE + RC+ LD+F EIDR+LRPEGW+IIRD LIES
Sbjct: 593 CEAFPTYPRTYDLVHAAGLLSLEFAQQRRCTMLDMFIEIDRLLRPEGWIIIRDIVPLIES 652
Query: 421 ARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQAS 458
ARALTTRLKWDARV+EIES+SD+RLLICQKP FKRQA+
Sbjct: 653 ARALTTRLKWDARVVEIESDSDQRLLICQKPLFKRQAN 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563316|ref|NP_177948.3| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|238479105|ref|NP_001154475.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|292630946|sp|Q9C9Q8.2|PMTT_ARATH RecName: Full=Probable pectin methyltransferase QUA2; AltName: Full=Protein OVERSENSITIVE TO SUGAR 1; AltName: Full=Protein QUASIMODO 2; AltName: Full=Protein TUMOROUS SHOOT DEVELOPMENT 2 gi|332197964|gb|AEE36085.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] gi|332197965|gb|AEE36086.1| putative pectin methyltransferase QUA2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/458 (78%), Positives = 403/458 (87%), Gaps = 6/458 (1%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGA
Sbjct: 231 MMMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGA 289
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HL SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+D
Sbjct: 290 HLLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGID 349
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++
Sbjct: 350 WDQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLN 405
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE
Sbjct: 406 QQDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEG 465
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDP
Sbjct: 466 RTRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDP 525
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+W
Sbjct: 526 SPPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNW 585
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
CE FPTYPRTYDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E
Sbjct: 586 CEPFPTYPRTYDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVE 645
Query: 420 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
AR T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 646 KARETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 683
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 458 | ||||||
| TAIR|locus:2032130 | 684 | TSD2 "TUMOROUS SHOOT DEVELOPME | 0.986 | 0.660 | 0.781 | 1.3e-203 | |
| TAIR|locus:2063798 | 606 | QUL2 "QUASIMODO2 LIKE 2" [Arab | 0.519 | 0.392 | 0.611 | 7.1e-154 | |
| TAIR|locus:2014789 | 603 | QUL1 "QUASIMODO2 LIKE 1" [Arab | 0.967 | 0.734 | 0.597 | 6e-151 | |
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.609 | 0.455 | 0.378 | 2.1e-90 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.615 | 0.463 | 0.380 | 1.3e-88 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.617 | 0.463 | 0.375 | 2.1e-88 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.620 | 0.455 | 0.378 | 2.7e-88 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.572 | 0.4 | 0.348 | 9.8e-79 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.539 | 0.355 | 0.324 | 1.6e-77 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.548 | 0.424 | 0.366 | 2e-75 |
| TAIR|locus:2032130 TSD2 "TUMOROUS SHOOT DEVELOPMENT 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1970 (698.5 bits), Expect = 1.3e-203, P = 1.3e-203
Identities = 358/458 (78%), Positives = 403/458 (87%)
Query: 1 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
MMM+E++QISFRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGA
Sbjct: 231 MMMMEDDQISFRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGA 289
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
HL SK++LTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+D
Sbjct: 290 HLLSKQILTMCIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGID 349
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
WDQKDG+LL+E+DRVLKPGGYFVWTSPLTNP RNK++ KRWNFV DF E++CW L++
Sbjct: 350 WDQKDGLLLVEIDRVLKPGGYFVWTSPLTNP----RNKDHLKRWNFVHDFAESICWTLLN 405
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEE 240
QQDETVVWKKT CYSSRKPG GPS+C+KG+DVESPYYRPLQ CIGGTR+RRWIPIE
Sbjct: 406 QQDETVVWKKTINTKCYSSRKPGVGPSVCTKGHDVESPYYRPLQMCIGGTRSRRWIPIEG 465
Query: 241 RRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDP 300
R WPSR+N+NK EL++YG+HPE ED ENWK V +WSLLSPLIFSDHPKRPGDEDP
Sbjct: 466 RTRWPSRSNMNKTELSLYGLHPEVLGEDAENWKITVREYWSLLSPLIFSDHPKRPGDEDP 525
Query: 301 SPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDW 360
SPPYNM+RNVLDMNA FGG NSALLE KSVWVMNVVPT G NHLPMILDRGFVGVLH+W
Sbjct: 526 SPPYNMLRNVLDMNAQFGGLNSALLEARKSVWVMNVVPTAGPNHLPMILDRGFVGVLHNW 585
Query: 361 CEAFPTYPRTYDLVHAEGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE 419
CE FPTYPRTYDLVHA+ LLSL++ R C +DIFTEIDR+LRPEGWVIIRDTA+L+E
Sbjct: 586 CEPFPTYPRTYDLVHADNLLSLQTSQPRKTCLLIDIFTEIDRLLRPEGWVIIRDTAQLVE 645
Query: 420 SARALTTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
AR T+LKW+ARVIE+ES+S++RLLICQKPF KRQ+
Sbjct: 646 KARETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 683
|
|
| TAIR|locus:2063798 QUL2 "QUASIMODO2 LIKE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 7.1e-154, Sum P(2) = 7.1e-154
Identities = 148/242 (61%), Positives = 182/242 (75%)
Query: 1 MMMLEEEQISFRSAS-LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 59
+M+LEE QI+F S L+FDGV+DY+ QIAEMIGL +++ F AGVRT+LDIGCG+GSFG
Sbjct: 172 LMLLEENQITFHSEDGLVFDGVKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFG 231
Query: 60 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119
AHL S +L+ +CIA YEA+GSQVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG
Sbjct: 232 AHLVSLKLMPICIAEYEATGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGT 291
Query: 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179
WD KD +LLLEVDRVLKPGGYFV TSP Q L + + V + + +CW L
Sbjct: 292 TWDIKDAMLLLEVDRVLKPGGYFVLTSPTNKAQGNLPDTKKTSISTRVNELSKKICWSLT 351
Query: 180 SQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIE 239
+QQDET +W+KTS +SCYSSR S P +C G+ V PYY PL PCI GT ++RWI I+
Sbjct: 352 AQQDETFLWQKTSDSSCYSSRSQASIP-LCKDGDSV--PYYHPLVPCISGTTSKRWISIQ 408
Query: 240 ER 241
R
Sbjct: 409 NR 410
|
|
| TAIR|locus:2014789 QUL1 "QUASIMODO2 LIKE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 275/460 (59%), Positives = 347/460 (75%)
Query: 1 MMMLEEEQISFRSAS-LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFG 59
+M+LEE QI+F S LIFDGV+DY+ QIAEMIGL +++ F AG+RT+LDIGCG+GSFG
Sbjct: 156 LMLLEENQITFHSDDGLIFDGVKDYAFQIAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFG 215
Query: 60 AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119
AHL S ++ +CIA YE SGSQVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG+
Sbjct: 216 AHLVSLNVMPICIAEYETSGSQVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGI 275
Query: 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF---VRDFVENLCW 176
WD KD +LLLEVDRVLKPGGYFV TSP + Q N + K+ + V + + +CW
Sbjct: 276 TWDIKDAMLLLEVDRVLKPGGYFVLTSPTSKAQG---NSPDTKKTSISTRVDELSKKICW 332
Query: 177 ELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWI 236
L QQDET +W+KT+ +CYSSR S P +C + V PYY PL PCI GT+++RWI
Sbjct: 333 SLSGQQDETFLWQKTADPNCYSSRSQASIP-VCKDDDSV--PYYHPLVPCISGTKSKRWI 389
Query: 237 PIEERRNWPSRAN-LNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRP 295
PI+ R SRA+ + +EL ++G+ PEEF ED + W++A+ N+WSLL+PLIFSDHPKRP
Sbjct: 390 PIQNR----SRASGTSLSELEIHGIKPEEFDEDIQVWRSALKNYWSLLTPLIFSDHPKRP 445
Query: 296 GDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVG 355
GDEDP PP+ M+RN +DMNA +G N ALL +GKSVWVMNVVP N LP+ILDRGF G
Sbjct: 446 GDEDPVPPFYMIRNAMDMNARYGNLNQALLNQGKSVWVMNVVPVKARNTLPIILDRGFTG 505
Query: 356 VLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415
LHDWCE FPTYPRTYD++HA LL+ S R CS +D+F E+DRILRPEGWV++ D
Sbjct: 506 ALHDWCEPFPTYPRTYDMLHANELLTHLSSER--CSLMDLFLEMDRILRPEGWVVLSDKL 563
Query: 416 RLIESARALTTRLKWDARVIEIESNSDERLLICQKPFFKR 455
+IE AR L R++W+ARVI+I+ SD+RLL+CQKP K+
Sbjct: 564 GVIEMARTLAARVRWEARVIDIQDGSDQRLLVCQKPLLKK 603
|
|
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 585 (211.0 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 110/291 (37%), Positives = 175/291 (60%)
Query: 2 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
M++ ++I+F F +G + Y +A+M+ + +R +LD+GCG SFGA
Sbjct: 168 MVVNGDKINFPGGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGA 227
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
+L S +++ M +A + +Q+Q LERG+P+ +G +K+LPYPS SF++ HC+RC +D
Sbjct: 228 YLLSHDIIAMSLAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 287
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
W Q+DGILLLE+DR+L+PGGYFV++SP +A+ + EN+K N + D + +CW++V+
Sbjct: 288 WLQRDGILLLELDRLLRPGGYFVYSSP----EAYAHDPENRKIGNAMHDLFKRMCWKVVA 343
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIG--GTR--NRRWI 236
++D++V+W K SCY R PG P +C G+D ++ + ++ CI R RW
Sbjct: 344 KRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWS 403
Query: 237 PIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLI 287
+ WP R L GV PE+F EDTE W+ V +W LL P++
Sbjct: 404 GLVP---WPRRLTAPPPRLEEIGVTPEQFREDTETWRLRVIEYWKLLKPMV 451
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 112/294 (38%), Positives = 176/294 (59%)
Query: 2 MMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFIL--AG-VRTILDIGCGYGS 57
M+++ ++I+F F G + Y IA M + N N +L G +RT+ D+GCG S
Sbjct: 164 MVVKGDKINFPGGGTHFHYGADKY---IASMANMLNYPNNVLNNGGRLRTVFDVGCGVAS 220
Query: 58 FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 117
FG +L S ++LTM +A + +Q+Q LERG+PA +G +K+LPYPS SF++ HC+RC
Sbjct: 221 FGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPYPSRSFELSHCSRC 280
Query: 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177
+DW Q+DGILLLE+DRVL+PGGYF ++SP +A+ +++E+ + W + VE +CW+
Sbjct: 281 RIDWLQRDGILLLELDRVLRPGGYFAYSSP----EAYAQDEEDLRIWREMSALVERMCWK 336
Query: 178 LVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWI 236
+ +++++TV+W+K CY R+PG+ P +C ND ++ + ++ CI +
Sbjct: 337 IAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACITSYSDHDHKT 396
Query: 237 PIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSD 290
WP+R LA +G F +DTE W+ V +W LLSP I SD
Sbjct: 397 KGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRVDTYWDLLSPRIESD 450
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 110/293 (37%), Positives = 175/293 (59%)
Query: 2 MMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAG--VRTILDIGCGYGSF 58
M+++ E+I+F F G + Y +A M+ N N + G +RT LD+GCG SF
Sbjct: 167 MVVKGEKINFPGGGTHFHYGADKYIASMANMLNFPN--NVLNNGGRLRTFLDVGCGVASF 224
Query: 59 GAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCG 118
G +L + E++TM +A + +Q+Q LERG+PA +G +K+LPYPS SF++ HC+RC
Sbjct: 225 GGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCR 284
Query: 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWEL 178
+DW Q+DGILLLE+DRVL+PGGYF ++SP +A+ +++E+ + W + V +CW +
Sbjct: 285 IDWLQRDGILLLELDRVLRPGGYFAYSSP----EAYAQDEEDLRIWREMSALVGRMCWTI 340
Query: 179 VSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIP 237
+++++TV+W+K CY R+PG+ P +C+ +D ++ Y ++ CI +
Sbjct: 341 AAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACITQYSDHDHKTK 400
Query: 238 IEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSD 290
WP+R LA +G + F +DTE W+ V +W LLSP I SD
Sbjct: 401 GSGLAPWPARLTSPPPRLADFGYSTDIFEKDTETWRQRVDTYWDLLSPKIQSD 453
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 110/291 (37%), Positives = 175/291 (60%)
Query: 3 MLEE-EQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 60
M+E+ E+ISF F G + Y IA M+ N+ +RT+LD+GCG SFGA
Sbjct: 172 MVEKGEKISFPGGGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGA 231
Query: 61 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120
+L + +++TM +A + +Q+Q LERG+PA +G +K+LPYPS SF+ HC+RC +D
Sbjct: 232 YLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRID 291
Query: 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180
W Q+DG+LLLE+DRVL+PGGYF ++SP +A+ +++EN K W + VE +CW +
Sbjct: 292 WLQRDGLLLLELDRVLRPGGYFAYSSP----EAYAQDEENLKIWKEMSALVERMCWRIAV 347
Query: 181 QQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGG-TRNRRWIPIE 239
++++TVVW+K CY R+PG+ P +C D ++ ++ CI +++
Sbjct: 348 KRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACITPYSKHDHKTKGS 407
Query: 240 ERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSD 290
WP+R + LA +G + F +DTE WK V ++W+L+S + S+
Sbjct: 408 GLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWNLMSSKVKSN 458
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 9.8e-79, Sum P(2) = 9.8e-79
Identities = 97/278 (34%), Positives = 154/278 (55%)
Query: 5 EEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLF 63
E+++ F F G + Y QI++MI + F + R LDIGCG SFGA L
Sbjct: 230 EKDKFVFPGGGTQFIHGADQYLDQISQMIP---DITFG-SRTRVALDIGCGVASFGAFLM 285
Query: 64 SKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123
+ T+ +A + +Q+Q LERG+PAM+ FA+++L YPS SF+M+HC+RC ++W +
Sbjct: 286 QRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTR 345
Query: 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN-QKRWNFVRDFVENLCWELVSQQ 182
DGILLLEV+R+L+ GGYFVW + Q ++++N Q++W + D +CWEL+ ++
Sbjct: 346 DDGILLLEVNRMLRAGGYFVWAA-----QPVYKHEDNLQEQWKEMLDLTNRICWELIKKE 400
Query: 183 DETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERR 242
VW+K SCY SR+ G+ P +C +D + +Y ++PCI + +
Sbjct: 401 GYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITRLPDNGYGA--NVS 458
Query: 243 NWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFW 280
WP+R L+ + + + + E K A FW
Sbjct: 459 TWPAR--LHDPPERLQSIQMDAYISRKEIMK-AESRFW 493
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 459 (166.6 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
Identities = 87/268 (32%), Positives = 156/268 (58%)
Query: 20 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG 79
G + Y Q+++M+ ++ F +R +D+GCG SFGA+L S++++TM +A +
Sbjct: 282 GADQYLDQMSKMV---SDITFG-KHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHE 337
Query: 80 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPG 139
+Q+Q LERG+PAM +FA+++L YPS +FD++HC+RC ++W + DGILLLE++R+L+ G
Sbjct: 338 NQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAG 397
Query: 140 GYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSS 199
GYF W + P + +++W + + +LCW+LV ++ +W+K CY S
Sbjct: 398 GYFAWAA---QP-VYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLS 453
Query: 200 RKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRW---IPIEERRNWPSRANLNKNELA 256
R+ G+ P +C + +D ++ +Y L+PCI + + +P+ WP+R + + L
Sbjct: 454 REAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGYGGNVPL-----WPARLHTPPDRLQ 508
Query: 257 V-----YGVHPEEFAEDTENWKTAVGNF 279
Y E F +++ W +G +
Sbjct: 509 TIKFDSYIARKELFKAESKYWNEIIGGY 536
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 446 (162.1 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 99/270 (36%), Positives = 154/270 (57%)
Query: 20 GVEDYSHQIAEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS 78
G +Y ++ M + NE+ + AGV +LD+GCG SF A+L + T+ A +
Sbjct: 179 GAAEYIQRLGNM--MTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKDGH 236
Query: 79 GSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 138
+Q+Q LERG+ AMI + A+KQLPYP+ SF+M+HC+RC VDW DGILL EV R+L+P
Sbjct: 237 ENQIQFALERGIGAMISAVATKQLPYPAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRP 296
Query: 139 GGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYS 198
G+FV++SP P A+ ++KE W+ + + +CW+L+S++ +T +W K K C
Sbjct: 297 NGFFVYSSP---P-AYRKDKEYPMIWDKLVNLTSAMCWKLISRKVQTAIWIKEEKEVCLK 352
Query: 199 SRKPGSGPSICSKGNDVESPYYR-PLQPC--IGGTRNRRWIPIEERRN-WPSRANLNKNE 254
+ S+C DV P ++ PL+ C I G R + ER + +P A L K
Sbjct: 353 QKAELKLISLCDV-EDVLKPSWKVPLKDCVQISGQTEERPSSLAERLSAYP--ATLRK-- 407
Query: 255 LAVYGVHPEEFAEDTENWKTAVGNFWSLLS 284
G+ +E+ DT W+ V ++W L++
Sbjct: 408 ---IGISEDEYTSDTVFWREQVNHYWRLMN 434
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C9Q8 | PMTT_ARATH | 2, ., 1, ., 1, ., - | 0.7816 | 0.9868 | 0.6608 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 458 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-160 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-06 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 3e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 4e-05 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 461 bits (1187), Expect = e-160
Identities = 183/447 (40%), Positives = 252/447 (56%), Gaps = 53/447 (11%)
Query: 20 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIA---NYE 76
G + Y +A+MI VRT LD+GCG SFGA+L S+++LTM A +E
Sbjct: 97 GADAYIDFLAQMIPDIAWG----GRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHE 152
Query: 77 ASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVL 136
A QVQ LERG+PAM+G +++LPYPS SFDM HC+RC + W DGILLLEVDRVL
Sbjct: 153 A---QVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHCSRCLIPWHANDGILLLEVDRVL 209
Query: 137 KPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASC 196
+PGGYFV + P + ++ Q+ W + ++LCW+LV+++ + +W+K SC
Sbjct: 210 RPGGYFVLSGPPVYARD---EEDLQEEWKAMEALAKSLCWKLVAKKGDIAIWQKPVNNSC 266
Query: 197 YSSRKPGSGPSICSKGNDVESPYYRPLQPCI------GGTRNRRWIPIEERRNWPSRANL 250
Y+ R+PG P +C +D ++ +Y P++ CI W+ WP R L
Sbjct: 267 YNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEVGGGWLE-----KWPER--L 319
Query: 251 NK-----NELAVYGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYN 305
+ GV E F DTE WK V + LL LI
Sbjct: 320 TAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGR-------------- 365
Query: 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFP 365
VRNV+DMNA FGGF +AL++ VWVMNVVP + LP+I DRG +G+ HDWCE F
Sbjct: 366 -VRNVMDMNAGFGGFAAALIDDP--VWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFS 422
Query: 366 TYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALT 425
TYPRTYDL+HA+ L SL + RC+ DI E+DRILRP G VIIRD +++ + +
Sbjct: 423 TYPRTYDLLHADHLFSLY---KKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIA 479
Query: 426 TRLKWDARVIEIESNSD--ERLLICQK 450
++W+ R+ + E E++LI QK
Sbjct: 480 KAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 24/105 (22%)
Query: 49 LDIGCGYGSFGAHLFSKELLTMCIANY---EASGSQVQLTLER-GLPAMIGSFASKQLPY 104
LD+GCG G L ++ L A + S + L +R ++G LP+
Sbjct: 1 LDVGCGTG-----LLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAE--DLPF 53
Query: 105 PSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
P SFD +LH D ++ L E+ RVLKPGG V
Sbjct: 54 PDESFDVVVSSLVLHHLP---DPER----ALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFA--S 99
+ +LD GCGYGS L ++ + + Y S Q ++ ER GL I F S
Sbjct: 1 KRVLDFGCGYGSDLIDL-AERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS 59
Query: 100 KQLPYPS-----LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 151
+ P+P F+++H + D L + R LK GG+ V + N
Sbjct: 60 AKDPFPDTYDLVFGFEVIHHIK---DKMD----LFSNISRHLKDGGHLVLADFIANL 109
|
Length = 224 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 48 ILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 95
ILD+GCG G L SKE L + G +V+ ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVR--------FVVA 52
Query: 96 SFASKQLPYPSLSFDMLHCARCGVD--WDQKDGILLLEVDRVLKPGG 140
+ LP+ SFD++ CA +D ++ LL E R+L+PGG
Sbjct: 53 DA--RDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM---IGSFAS 99
+LD+GCG G L K + + S ++ E G + G
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
Query: 100 -KQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSP 147
QL SFD++ V D +L E+ RVLKPGG + + P
Sbjct: 66 LPQLQLEDNSFDVVISN--EVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113
|
This family appears to be have methyltransferase activity. Length = 151 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 458 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.97 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.79 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.74 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.72 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.6 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.6 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.59 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.58 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.58 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.57 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.56 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.56 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.56 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.56 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.54 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.53 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.53 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.53 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.52 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.51 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.49 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.48 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.48 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.46 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.45 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.44 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.44 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.44 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.43 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.43 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.42 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.4 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.4 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.36 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.36 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.35 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.34 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.33 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.33 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.32 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.3 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.3 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.28 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.28 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.28 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.27 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.26 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.23 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.22 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.22 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.21 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.21 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.21 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.2 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.2 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.18 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.18 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.18 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.18 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.17 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.17 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.16 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.15 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.15 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.15 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.14 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.14 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.13 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.13 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.13 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.12 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.12 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.12 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.12 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.1 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.1 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.08 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.07 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.07 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.06 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.06 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.05 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.05 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.04 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.03 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.02 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.99 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.98 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.95 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.94 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.94 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.94 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.93 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.91 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.9 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.89 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.89 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.88 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.86 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.82 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.81 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.81 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.8 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.79 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.79 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.79 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.79 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.78 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.76 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.75 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.75 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.75 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.75 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.74 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.74 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.71 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.71 | |
| PLN02366 | 308 | spermidine synthase | 98.7 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.7 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.7 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.69 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.69 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.68 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.67 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.66 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.65 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.64 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.64 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.61 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.6 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.59 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.56 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.5 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.5 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.47 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.46 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.45 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.45 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.45 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.41 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.41 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.4 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.38 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.36 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.36 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.34 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.33 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.31 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.31 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.28 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.28 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.25 | |
| PLN02476 | 278 | O-methyltransferase | 98.25 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.24 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.23 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.23 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.2 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.19 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.18 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.16 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.16 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.14 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.13 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.12 | |
| PLN02823 | 336 | spermine synthase | 98.11 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.09 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.08 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.08 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.05 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.03 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.98 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.95 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.93 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.91 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.91 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.9 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.89 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.88 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.87 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.86 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.85 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.83 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.83 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.82 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.82 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.79 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.79 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.77 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.75 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.74 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.74 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.73 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.72 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.69 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.66 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.63 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.6 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.6 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.6 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.59 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.59 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.57 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.57 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.54 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.52 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.52 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.52 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.5 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.5 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.5 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.44 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.44 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.4 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.38 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.38 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.36 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.36 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.34 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.32 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.3 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.3 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.29 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.28 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.27 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.25 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.22 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.21 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 97.21 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.2 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.2 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.19 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 97.18 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.18 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.18 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.16 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.16 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.13 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.11 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.11 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.11 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.09 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.06 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.05 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.04 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 97.02 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.0 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.0 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 96.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.94 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.93 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 96.92 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.91 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.91 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 96.86 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.83 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.83 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 96.81 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.81 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.76 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.75 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.74 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.74 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.74 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.73 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.71 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.7 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 96.69 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.69 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.68 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.65 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.65 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.64 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.63 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 96.62 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.62 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 96.58 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 96.53 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.52 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.49 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.41 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 96.36 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.33 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 96.32 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.27 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 96.27 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 96.27 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.26 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 96.23 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 96.2 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.15 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.12 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 96.1 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 96.1 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.04 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.04 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.03 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 96.03 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 95.98 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.92 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 95.86 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 95.82 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.79 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.73 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 95.73 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 95.69 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 95.66 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.57 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 95.5 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 95.49 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.49 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 95.48 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 95.48 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.41 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.36 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 95.36 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.35 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.33 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 95.31 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.29 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.25 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 95.25 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.14 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.12 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 94.92 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.85 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.73 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.65 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 94.63 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 94.31 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 94.25 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.21 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 93.93 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 93.62 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 93.42 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 93.38 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 93.31 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 93.12 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 93.08 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 93.03 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 92.89 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 92.82 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 92.66 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 92.64 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 92.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 92.33 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 92.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 92.09 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 92.02 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 91.85 | |
| PHA01634 | 156 | hypothetical protein | 91.8 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 91.63 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 91.52 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 91.43 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.35 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 91.08 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 90.99 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 90.65 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 90.5 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 90.49 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 90.31 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 90.29 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 90.21 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 90.1 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.88 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 89.76 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 89.67 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 89.55 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 89.47 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 89.41 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 89.13 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 89.12 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 89.02 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.85 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 88.7 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.66 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 88.5 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 88.32 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 88.31 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 88.1 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 87.96 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 87.89 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 87.86 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 87.51 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.45 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 87.33 | |
| PLN02366 | 308 | spermidine synthase | 87.19 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 87.05 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 86.96 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 86.85 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 86.7 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 86.42 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 86.26 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 86.23 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 86.05 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 86.0 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 85.65 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 85.36 | |
| PLN02476 | 278 | O-methyltransferase | 84.77 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 84.76 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 84.61 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 84.51 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 84.36 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 84.35 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 84.07 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 83.89 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 83.36 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 82.79 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 82.7 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 82.61 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 82.45 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 82.01 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 81.83 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 81.76 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 81.67 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 81.53 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 81.43 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 80.96 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 80.69 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 80.69 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-128 Score=993.57 Aligned_cols=423 Identities=46% Similarity=0.913 Sum_probs=399.7
Q ss_pred CCcccccceeccccccCc-cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH
Q 012709 1 MMMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG 79 (458)
Q Consensus 1 ~m~~~~~~~~F~~~~~~f-d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~ 79 (458)
||..++++|.|+|++++| +++..|+++++++++.. ...+..+++||||||+|+|+++|+++++.+++++..|.++
T Consensus 77 Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~ 152 (506)
T PF03141_consen 77 WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHE 152 (506)
T ss_pred ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCc
Confidence 688999999999999999 89999999999999863 2356789999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHH
Q 012709 80 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE 159 (458)
Q Consensus 80 ~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e 159 (458)
.++|+|.+||+++.+......+||||+++||+|||++|+.+|..+.+.+|-|++|+|||||+|+++.++.+ ...+++
T Consensus 153 ~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~---~r~~~~ 229 (506)
T PF03141_consen 153 AQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY---QRTDED 229 (506)
T ss_pred hhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc---ccchHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999876 233456
Q ss_pred HHHHHHHHHHHHHhhccEEEEeeeceEEEeecCCCcccccCCCCCCCCCCCCCCCCCCcccccCCcccccCCCc-cccCC
Q 012709 160 NQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPI 238 (458)
Q Consensus 160 ~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~~~~~c~~~R~~~~~p~lC~~~~~~~~~wY~~l~~ci~~~~~~-~~~~~ 238 (458)
..+.|++|+++++++||++++++++++|||||.+++||.+|.....|++|+.++++|++||++|++||+++++. .++++
T Consensus 230 ~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~ 309 (506)
T PF03141_consen 230 LEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccc
Confidence 67789999999999999999999999999999999999999987889999988999999999999999999875 46789
Q ss_pred cccCCCccccccCCcchhc---cCCCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccc
Q 012709 239 EERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNA 315 (458)
Q Consensus 239 ~~~~~wp~rl~~~~~~~~~---~~~~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~ 315 (458)
+++++||+||+++|+||+. .|+++|+|.+||++|+++|++||++++..++ |++|||||||||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~---------------~~~iRNVMDMnA 374 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIK---------------WGRIRNVMDMNA 374 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccccc---------------ccceeeeeeecc
Confidence 9999999999999999997 7999999999999999999999998864444 559999999999
Q ss_pred cchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCCCCCCcchh
Q 012709 316 HFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDI 395 (458)
Q Consensus 316 ~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~ 395 (458)
|||||||||+ ++|||||||||+.++|||++||||||||+||||||+|||||||||||||++|||.+ .+||+|++|
T Consensus 375 g~GGFAAAL~--~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~---~~rC~~~~i 449 (506)
T PF03141_consen 375 GYGGFAAALI--DDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY---KDRCEMEDI 449 (506)
T ss_pred cccHHHHHhc--cCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh---cccccHHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred hhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccCC--CccEEEEEe
Q 012709 396 FTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS--DERLLICQK 450 (458)
Q Consensus 396 ~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~k 450 (458)
||||||||||||++||||+.+++++|++|+++|||+++++++|+++ .||||||||
T Consensus 450 llEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 450 LLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999987 499999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=279.63 Aligned_cols=200 Identities=22% Similarity=0.347 Sum_probs=152.9
Q ss_pred cCCcccccCCCccccCCcccCCCccccc------cCCcchhccC---------CCccccccchhhHHHHHHHHHHhhccc
Q 012709 222 PLQPCIGGTRNRRWIPIEERRNWPSRAN------LNKNELAVYG---------VHPEEFAEDTENWKTAVGNFWSLLSPL 286 (458)
Q Consensus 222 ~l~~ci~~~~~~~~~~~~~~~~wp~rl~------~~~~~~~~~~---------~~~~~f~~d~~~w~~~~~~y~~~~~~~ 286 (458)
.-..|+.|+|... ..+-+||+.-. .+.+.|+..+ -..-.|.-....+++.+.+|...|...
T Consensus 33 ~~~~CLVp~P~gY----k~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~ 108 (506)
T PF03141_consen 33 ERLRCLVPPPKGY----KTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEM 108 (506)
T ss_pred CCCccccCCCccC----CCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHH
Confidence 4457999988755 34679998653 3455565421 113346666667777777776544433
Q ss_pred ccCCCCCCCCCCCCCCCC-CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc---cccccccc
Q 012709 287 IFSDHPKRPGDEDPSPPY-NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWC 361 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~-~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g~~~~~~ 361 (458)
+.. +-| +.||++||+|||+|||||+|+ +++|.+|+++|.+.+ ++.|+++|||+ ||++.+-.
T Consensus 109 ~~~------------~~~~g~iR~~LDvGcG~aSF~a~l~--~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~r 174 (506)
T PF03141_consen 109 IPL------------IKWGGGIRTALDVGCGVASFGAYLL--ERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQR 174 (506)
T ss_pred hhc------------cccCCceEEEEeccceeehhHHHHh--hCCceEEEcccccCCchhhhhhhhcCcchhhhhhcccc
Confidence 321 001 379999999999999999999 999999999999988 99999999997 56666666
Q ss_pred ccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe----------ccHHHHHHHHHHHhhccce
Q 012709 362 EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----------DTARLIESARALTTRLKWD 431 (458)
Q Consensus 362 ~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~----------d~~~~~~~~~~~~~~~~w~ 431 (458)
.|||. +||||+|++++...|+.. - ..+|+|+|||||||||||+. |....++++++++++|||+
T Consensus 175 LPfp~--~~fDmvHcsrc~i~W~~~---~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~ 247 (506)
T PF03141_consen 175 LPFPS--NAFDMVHCSRCLIPWHPN---D--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWK 247 (506)
T ss_pred ccCCc--cchhhhhcccccccchhc---c--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 66665 999999977777777422 1 36999999999999999984 3467899999999999999
Q ss_pred EEEEeeccCCCccEEEEEecc
Q 012709 432 ARVIEIESNSDERLLICQKPF 452 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~k~~ 452 (458)
....+ ..+.||||+.
T Consensus 248 ~va~~------~~~aIwqKp~ 262 (506)
T PF03141_consen 248 KVAEK------GDTAIWQKPT 262 (506)
T ss_pred Hheee------CCEEEEeccC
Confidence 98887 6699999985
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=186.58 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccC--CCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~--~Lpfp~~sFD~I~~~~~l 118 (458)
+..+|||+|||+|.++..|++.+. +++|+|+++.|++.+++.. .++.+...|+. .+++++++||+|+|+.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 345899999999999999998753 8999999999999886542 35677777775 467888999999999988
Q ss_pred cccccc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++.++ ...+++++.|+|||||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 887643 3589999999999999999988654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=167.59 Aligned_cols=104 Identities=24% Similarity=0.253 Sum_probs=94.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCC-----eEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~-----~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
.+.+|||||||||.++..+++... ..+++++|+|++|+..|+++... +.+..+|++.|||+|++||+|.+++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 567999999999999999998754 78999999999999999998443 889999999999999999999999997
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++ +..++|+|++|||||||++++.+...
T Consensus 130 rnv~-d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 130 RNVT-DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred hcCC-CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 7777 78899999999999999999988755
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=166.67 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..+.+|||+|||||.++..++++..+..+|+++|+|++|++.|+++ ..++.+..+|++++|+++++||+|+|++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 4456999999999999999988755667999999999999999887 23789999999999999999999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+++ +..++|+|++|+|||||++++.+.
T Consensus 126 lrn~~-d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNFP-DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG-S-SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhC-CHHHHHHHHHHHcCCCeEEEEeec
Confidence 77776 678899999999999999999886
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=162.99 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--------CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--------~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
+..+|||+|||+|.++..++++..+..+|+|+|+|++|++.|+++. .++.+..+|+..+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4579999999999999988876334468999999999999998652 26788999999999999999999999
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++++. ++..+++|+.|+|||||++++.+...
T Consensus 153 ~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 153 YGLRNVV-DRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccccCC-CHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 9877765 77889999999999999999998754
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=159.01 Aligned_cols=138 Identities=19% Similarity=0.293 Sum_probs=114.5
Q ss_pred ccccce--eccccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHH
Q 012709 4 LEEEQI--SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ 81 (458)
Q Consensus 4 ~~~~~~--~F~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~ 81 (458)
+++..+ .|+..+..|+..+..++.+++.+..... .....+|||+|||+|.++..++..+. +++++|+|+.|
T Consensus 4 ~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~ 76 (251)
T PRK10258 4 VNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPM 76 (251)
T ss_pred cCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHH
Confidence 455566 8999999998877777777776654322 22456899999999999999987653 89999999999
Q ss_pred HHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 82 VQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 82 i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.|+++.....+..+|.+.+|+++++||+|+|+.+ ++|..++..+|.++.|+|||||.++++.+..
T Consensus 77 l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 77 LAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999866667788899999999999999999976 6677788899999999999999999998744
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-17 Score=133.28 Aligned_cols=93 Identities=30% Similarity=0.446 Sum_probs=80.1
Q ss_pred EEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--CeEEEeeccCCCCCCCCCeeEEEeccccccccccHH
Q 012709 49 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 126 (458)
Q Consensus 49 LDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~ 126 (458)
||+|||+|.++..|+++ +..+++++|+++++++.++++.. ...+...+...+|+++++||+|+|..+++++ .+..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 34599999999999999999843 4558999999999999999999999987777 5778
Q ss_pred HHHHHHHhcccCCcEEEE
Q 012709 127 ILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 127 ~~L~ei~RvLkPGG~lii 144 (458)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-15 Score=146.11 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
...+|||||||-|.++..|++.|. +|+|+|+++.+++.|+.+ ++.+.+....++++....++||+|+|.++++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 456999999999999999999985 999999999999998865 5566677777777776668999999999999
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCccc
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA 153 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~ 153 (458)
|++ +++.+++.+.+++||||.+++++.+.+...
T Consensus 136 Hv~-dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 136 HVP-DPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred ccC-CHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 998 778899999999999999999998775543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=148.31 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=107.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..|++.+. +|+|+|+++.|++.|+++. .++.+..++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 346999999999999999988654 8999999999999998762 2577888888889888889999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccc-------------cccH----HHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF-------------LRNK----ENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~-------------~~~~----e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
++|+. ++..+++++.++|||||.+++++.......+ .... .....-+++..+++..+++.+.
T Consensus 208 LeHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 208 IEHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred HHhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 88887 6788999999999999999999875532111 0000 0011236788889999998887
Q ss_pred eee
Q 012709 181 QQD 183 (458)
Q Consensus 181 ~~~ 183 (458)
..+
T Consensus 287 ~~G 289 (322)
T PLN02396 287 MAG 289 (322)
T ss_pred Eee
Confidence 654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=135.44 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=107.1
Q ss_pred eccccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC
Q 012709 10 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 89 (458)
Q Consensus 10 ~F~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~ 89 (458)
+|.+.+..|+....+++.+...+........ .....+|||+|||+|.++..+++.+ +..+++++|+++.+++.++++.
T Consensus 1 ~~~~~~~~y~~~~~~q~~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~ 78 (240)
T TIGR02072 1 SFNKAAKTYDRHAKIQREMAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKL 78 (240)
T ss_pred CcchhhhchhHHHHHHHHHHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhc
Confidence 3667777787666666666655543322111 1234689999999999999999875 4567999999999999998874
Q ss_pred C-CeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 90 L-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 90 ~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ++.+..+|...+++++++||+|+++.++++ ..++..++.++.++|+|||.++++++..
T Consensus 79 ~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 79 SENVQFICGDAEKLPLEDSSFDLIVSNLALQW-CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CCCCeEEecchhhCCCCCCceeEEEEhhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3 567888898889988899999999988554 4577889999999999999999998644
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-15 Score=133.05 Aligned_cols=129 Identities=26% Similarity=0.442 Sum_probs=97.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..+++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+++|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 3456999999999999999988765 99999999999988 333444444445556789999999999988877
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCc------ccccc-cHH--H--HHHHHHHHHHHHhhccEEEE
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNP------QAFLR-NKE--N--QKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~------~~~~~-~~e--~--~~~w~~i~~l~~~~~w~~v~ 180 (458)
++..+|+++.++|||||+++++++.... ..+.. ... . ...-+++..++++.+|+.+.
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6889999999999999999999987531 00100 010 0 11126788888888888775
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=146.27 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..|+++. ..+++|+|+|+.|++.|+++ +. ++.+..+|+..+|+++++||+|+|..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345799999999999999999863 34899999999999988765 33 58899999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++|+. +...+++++.|+|||||++++++..
T Consensus 195 ~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 195 SGEHMP-DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred chhccC-CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 988887 6678999999999999999998864
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=138.30 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=104.3
Q ss_pred ccchhhHHHHHHHHHhhhhcccc--------ccCCCCEEEEECCCCchhHHHHhhcCC-----ccceEEEEcCCHHHHHH
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNF--------ILAGVRTILDIGCGYGSFGAHLFSKEL-----LTMCIANYEASGSQVQL 84 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~--------~~~~~~~VLDVGCG~G~~~~~La~~~~-----~~~~v~gvD~S~~~i~~ 84 (458)
|...+.+++.+.+.+.....+++ .+....++||++||||..+..+++.-. ...+|+..|+++.|+..
T Consensus 66 F~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~v 145 (296)
T KOG1540|consen 66 FESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAV 145 (296)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHH
Confidence 44556677777777765544332 234458999999999999988877532 12689999999999998
Q ss_pred HHHcC----C----CeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 85 TLERG----L----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 85 A~er~----~----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++|. . .+.+..+|++.|||++.+||....++.+.+++ ++++.|+|++|||||||+|.+-++
T Consensus 146 gkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 146 GKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred HHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 87773 2 37788999999999999999999999988888 788999999999999999998876
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=142.47 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..++++. +..+++|+|+|+.|++.|++++ +.+..+|+..++ ++++||+|+|+.+++++.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehhhhhCC
Confidence 345799999999999999999874 5568999999999999998875 556677777774 567999999998866554
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++..+++++.++|||||++++..+
T Consensus 104 -d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 104 -EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 778899999999999999999865
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=136.31 Aligned_cols=202 Identities=18% Similarity=0.264 Sum_probs=146.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...++|.|+|||+|..+..|+++ ++...++|+|.|++|++.|+++.+++.|..+|+.... |+..+|+++++.+ ++|.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhc
Confidence 45679999999999999999986 5889999999999999999999999999999988874 4578999999975 7887
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeeeceEEEeecC-CCcccccCC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRK 201 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~~-~~~c~~~R~ 201 (458)
.+-.++|..+...|.|||.+.+..|.... ......|++.+++..|.......-. -+++. ...-|.+..
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~d---------epsH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL 174 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLD---------EPSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL 174 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccC---------chhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh
Confidence 77778999999999999999999874422 1234556777776666554433211 23333 223333322
Q ss_pred CCCCCCCCCCCCCCCCcccccCCcccccCCCccccCCcccCCCccccccCCcchhccCCCccccccchhhHHHHHHHHHH
Q 012709 202 PGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWS 281 (458)
Q Consensus 202 ~~~~p~lC~~~~~~~~~wY~~l~~ci~~~~~~~~~~~~~~~~wp~rl~~~~~~~~~~~~~~~~f~~d~~~w~~~~~~y~~ 281 (458)
. +.-|. -+-....||++|...-. -.+|+.+..+.||=++| |.+.|+.-+..|..
T Consensus 175 a---~~~~r-vDiW~T~Y~h~l~~a~a---IvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~ 228 (257)
T COG4106 175 A---PLACR-VDIWHTTYYHQLPGADA---IVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLA 228 (257)
T ss_pred C---cccce-eeeeeeeccccCCCccc---hhhheeccccceecccc-------------------CHHHHHHHHHHHHH
Confidence 1 23444 34566778877655421 13577777788776666 45778888888987
Q ss_pred hhc
Q 012709 282 LLS 284 (458)
Q Consensus 282 ~~~ 284 (458)
+|.
T Consensus 229 ~l~ 231 (257)
T COG4106 229 LLA 231 (257)
T ss_pred HHH
Confidence 765
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=140.47 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+..+|||||||+|..+..+++.. ..+++++|+|+.|++.|+++. .++.+...|....|+++++||+|++..+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 345699999999999999997642 358999999999999999873 357788888888899999999999988888
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.. +...+|+++.++|||||+++++++..
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 8763 66789999999999999999998754
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=134.09 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=88.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeE-EEeeccCCCC-CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~-~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
....|||||||||....++-.. +..+|+++|+++.|-++|.++ ..++. +++++.+++| ++++|+|+|+|..
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred CccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3346899999999998888643 456999999999999887654 44555 8899999998 8999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|++... ++.+.|+|+.|+|||||++++.++..
T Consensus 154 vLCSve-~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 154 VLCSVE-DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEeccC-CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 988877 77899999999999999999999755
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=144.13 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=105.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||||||+|.++..+++.. +..+++++|.|+.|++.|+++. .++.+..+|...+++++++||+|+++.+++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 45699999999999998887753 3458999999999999998873 35678888999999999999999999887776
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccH--H---HHHHHHHHHHHHHhhccEEEEeeece
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--E---NQKRWNFVRDFVENLCWELVSQQDET 185 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~--e---~~~~w~~i~~l~~~~~w~~v~~~~~~ 185 (458)
. ++..+|+++.|+|||||++++.++.... .+.... + ....-+++.+++++.+|+.+..+...
T Consensus 192 ~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~-~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 192 P-DPQRGIKEAYRVLKIGGKACLIGPVHPT-FWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEEecCcc-hhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 6 6678999999999999999987653211 111000 0 01123677788888999988755433
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=133.45 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++...+..+++++|+|+.|++.|+++ + .++.+..+|...+++++++||+|++..++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 346999999999999999987643456899999999999998876 2 25778888888888888999999999875
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+. .+...+++++.++|+|||++++.++..
T Consensus 125 ~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 125 RNV-PDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccC-CCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 554 467789999999999999999987643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=137.88 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||+|.++..++++. ..+++|+|+|++|++.|+++. ....++++.+|+++++||+|+|+.+++++. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 5699999999999999998873 248999999999999998863 356788899999999999999999876655 7
Q ss_pred HHHHHHHHHhcccCC
Q 012709 125 DGILLLEVDRVLKPG 139 (458)
Q Consensus 125 ~~~~L~ei~RvLkPG 139 (458)
+.++++|+.|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 788999999999995
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-14 Score=137.27 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++++. +|+++|+|+.|++.|+++ + .++.+..++...++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 446999999999999999999864 899999999999999876 2 25677888877763 6678999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++++. ++..++.++.++|||||++++.....
T Consensus 121 vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 121 VLEWVA-DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHHhhC-CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 866655 77889999999999999999876543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-14 Score=132.11 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++.+|++++. +|+++|+|+.|++.|+++ +. ++.+...|...++++ ++||+|+|+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 46899999999999999999865 899999999999988765 33 366777787777765 6799999998866
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEe
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++.. +...+++++.++|||||++++..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6553 34589999999999999966543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=137.29 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=86.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..+|||||||+|.++..++++. +..+++|+|+|+.|++.|+++..++.+..+|...+. ++++||+|+|+.+++ |.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~~ 106 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-WL 106 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-hC
Confidence 345799999999999999998864 556999999999999999998777888888887664 456899999998755 44
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+...+++++.++|||||.+++..+
T Consensus 107 ~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 107 PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5778899999999999999999864
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=130.89 Aligned_cols=141 Identities=14% Similarity=0.224 Sum_probs=97.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+.+|||+|||+|.++.+|++++. +|+++|+|+.|++.++++ ++++.+...|....+++ ++||+|+|+.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 46899999999999999998764 899999999999987654 55666667776666665 57999999988776
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeCCCCcccc-cccHHHHHHHHHHHHHHHhhccEEEEeeeceEEEeec
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAF-LRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKT 191 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~-~~~~e~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~ 191 (458)
+.. +...+++++.|+|||||++++.......... ..........+++.+... .|+.+........|.+.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 653 3458999999999999996665432211100 001112223455666665 47777765444444443
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-14 Score=118.02 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeecc-CCCCCCCCCeeEEEecc-
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~-~~Lpfp~~sFD~I~~~~- 116 (458)
..+|||+|||+|.++..++++. +..+++++|+|+.|++.|+++. .++.+...|. ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 3589999999999999999832 3558999999999999998873 5788999888 333333 5699999998
Q ss_pred cccccc--ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~--~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++.++. .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 433333 244589999999999999999976
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-14 Score=125.98 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..|+++..+..+++|+|+|+.|++.|+++ +. ++.+...|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 346999999999999999995433567899999999999999884 44 5899999999887 66 8999999998
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++++. ++..+++++.++|++||.++++.+.
T Consensus 82 ~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 765544 6778999999999999999999863
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=136.44 Aligned_cols=98 Identities=26% Similarity=0.356 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCc--cceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~--~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||+|||+|.++..+++.... ...++|+|+|+.|++.|.++..++.+.++|...+|+++++||+|++..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999998875321 2378999999999999999888888999999999999999999998653
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+ ..+.|+.|+|||||+|+++.+..
T Consensus 161 ~----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C----CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24689999999999999998755
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=124.97 Aligned_cols=105 Identities=27% Similarity=0.350 Sum_probs=90.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ ..++.+...|...+++++++||+|++..++
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3456999999999999999988643456899999999999999887 346778888888888888999999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.++. ++..+++++.++|||||++++.++.
T Consensus 98 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 98 QHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 7776 6788999999999999999998864
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=142.82 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=89.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+..+|||||||+|..+..|++.. ..+++|+|+|+.|++.|+++ ..++.+..+|...+++++++||+|+|..+++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 45699999999999999998753 45899999999999999876 2357888899888899889999999999888
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+. ++..+++++.|+|||||.+++.++..
T Consensus 344 h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 344 HIQ-DKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccC-CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 876 67889999999999999999998654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.2e-13 Score=131.45 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|..+..+++...+..+++++|+++.|++.|+++ +. ++.+..++...+++++++||+|+++.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 3557999999999988877766533445899999999999999876 32 677888899999998899999999876
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++ ..+...+++++.|+|||||++++++...
T Consensus 156 ~~~-~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INL-SPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccC-CCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 544 4466789999999999999999987543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=131.73 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||||||+|..+..+++. ..+..+++++|+|+.|++.|+++ +. ++.+..+++..+|++ .+|+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4468999999999999888763 23567999999999999999887 22 578888888888765 499999998
Q ss_pred cccccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++++..+ ...+++++.++|||||.|++++..
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 87776533 347999999999999999999853
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-14 Score=117.97 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=75.3
Q ss_pred EEEECCCCchhHHHHhhcC--CccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCCCCCCCCeeEEEeccc-ccc
Q 012709 48 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC-GVD 120 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~--~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~-l~~ 120 (458)
|||+|||+|..+..+.+.. .+..+++++|+|++|++.|+++. .++.+.++|...+++.+++||+|+|+.+ +.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998764 13369999999999999998874 7899999999999988899999999655 666
Q ss_pred cccc-HHHHHHHHHhcccCCc
Q 012709 121 WDQK-DGILLLEVDRVLKPGG 140 (458)
Q Consensus 121 ~~~~-~~~~L~ei~RvLkPGG 140 (458)
+.++ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 5533 3489999999999998
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=133.86 Aligned_cols=132 Identities=14% Similarity=0.225 Sum_probs=94.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++.+|++++. +|+|+|+|+.+++.++++ +.++.+...|....++ +++||+|+|+.++++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 35899999999999999998765 899999999999987654 5677777777766655 578999999988766
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeCCCCccccc-ccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-RNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
... +...+++++.++|+|||++++........... ........-.++.+.... |+.+.-.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 553 34579999999999999977754322111100 011111223456666653 8777654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=134.50 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=99.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH--Hc----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~--er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++..++..+.. .|+|+|+|+.|+..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 3479999999999999999987642 6999999999886432 22 2367888889999998 788999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccc--cccHHH---------HHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF--LRNKEN---------QKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~--~~~~e~---------~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++|.. ++..+|++++++|+|||.+++.+........ ....+. ...-..+..++++.+|+.+...
T Consensus 199 l~H~~-dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 199 LYHRR-SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred hhccC-CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 87765 7788999999999999999987543211000 000000 0122567778888888877543
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.1e-13 Score=126.23 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||||||+|.++..|++.. +..+++|+|+|+.|++.|+++...+.+..+++.. |+++++||+|+|+.+++|+..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 45689999999999999998752 3458999999999999999876667777888777 889999999999999888863
Q ss_pred c-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 124 K-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 124 ~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+ ..++++++.|++ ++++++.+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3 358999999998 578888775
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.5e-13 Score=128.50 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-CccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..++++. .+..+++|+|+|+.|++.|+++ ..++.+..+|...++++ .+|+|+|+.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 44689999999999999998753 3567999999999999999876 23578888898888775 489999998
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++++.. +...+++++.|+|||||.++++++..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8777653 34589999999999999999998643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=131.38 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=97.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH---Hc---CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER---GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~---er---~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++..++..+. ..++|+|+|+.|+..+. +. ..++.+..++...+|.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 357999999999999999888764 37999999999986532 21 23566777788888765 48999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccc--ccccHH---------HHHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA--FLRNKE---------NQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~--~~~~~e---------~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++|+. ++..+|++++|+|||||.|++.+....... ...... ....-.++...+++.+|+.+...
T Consensus 198 L~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 198 LYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred hhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 88876 778899999999999999999764321100 000000 00113567788889999887644
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-14 Score=117.89 Aligned_cols=92 Identities=28% Similarity=0.346 Sum_probs=59.8
Q ss_pred EEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCC--CCCCCeeEEEeccccccc
Q 012709 49 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 49 LDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~l~~~ 121 (458)
||||||+|.++..++++. +..+++++|+|+.|++.|+++ . .............. .+.++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999874 677999999999999777666 1 22333333333321 122599999999998877
Q ss_pred cccHHHHHHHHHhcccCCcEE
Q 012709 122 DQKDGILLLEVDRVLKPGGYF 142 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~l 142 (458)
.+...+++.+.++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=130.48 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCch----hHHHHhhcCC----ccceEEEEcCCHHHHHHHHHcC--------------------------
Q 012709 44 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG-------------------------- 89 (458)
Q Consensus 44 ~~~~VLDVGCG~G~----~~~~La~~~~----~~~~v~gvD~S~~~i~~A~er~-------------------------- 89 (458)
.+.+|+|+|||+|. ++..+++... ...+|+|+|+|+.|++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555554321 2468999999999999998741
Q ss_pred ------CCeEEEeeccCCCCCCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 90 ------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 90 ------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.+...|....+++.++||+|+|.++++++... ..++++++.++|+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 14678888888888878999999999998888643 34899999999999999999653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=124.60 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=97.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
++|||||||+|.++..+++.. +..+++|+|+|+.+++.|+++ +. ++.+...|....+++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 379999999999999998864 456899999999999999876 22 467777787666665 5899999999888
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCccccccc---HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN---KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~---~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
|+. +...+|+++.++|||||++++.++.......... ........++.+++++.+++.+...
T Consensus 79 ~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 79 HIK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred hCC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 776 5678999999999999999999864321100000 0001112445566777788776544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-12 Score=133.80 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|... +++.++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 4689999999999999988753 556999999999999999876 33 45666666432 2445689999996321
Q ss_pred cccc---------------------cc----HHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWD---------------------QK----DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~---------------------~~----~~~~L~ei~RvLkPGG~liis~ 146 (458)
+... .+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1100 01 1246778899999999998864
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-12 Score=117.30 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=93.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|..+..++.+. +..+|+++|+++.|++.|+++ +. ++.+..++...++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999988743 467999999999999988765 33 47888888888776 679999998742
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.+...+++++.++|||||++++..... .-.++..+++..+|.+..+-
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD-------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC-------------hHHHHHHHHHhcCceEeeeE
Confidence 245679999999999999999987532 12346777787899877654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-13 Score=129.86 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=82.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-----------CeEEEeeccCCCCCCCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----------PAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-----------~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
+++|||||||+|.++..|++.|. +|+|+|+++.|++.|+++.. ...+.+.+.+.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 37899999999999999999885 89999999999999998721 1223334444432 4599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
|+.+++|+. +++.++..+.+.|||||.+++++-....
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 999999987 7788999999999999999999876543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=139.73 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC--CCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~ 117 (458)
+..+|||+|||+|.++..+++.. +..+++|+|+|+.|++.|+++ +.++.+..+|...+| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 35699999999999998888753 677999999999999999876 345677788888887 88899999999988
Q ss_pred ccccc------------ccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~------------~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++++. .+...+|+++.|+|||||++++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 76652 23458999999999999999999853
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=116.48 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=90.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH----HHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A----~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+.++||+|||.|..+.+|+++|+ .|+++|.|+..++.+ .++++++.....|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 46999999999999999999998 899999999888654 45588888899998887776 68999999877666
Q ss_pred cccc-HHHHHHHHHhcccCCcEEEEEeCCCCccccc-ccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 121 WDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-RNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 121 ~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
...+ ...++..+...++|||++++.........+. .+.+....-.++..... .|+++.-..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 6543 3478999999999999998865433221111 11112222244555555 698887443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=116.40 Aligned_cols=103 Identities=23% Similarity=0.274 Sum_probs=87.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+..+|||+|||+|.++..+++......+++++|+++.+++.++++. .++.+...+...+++++++||+|+++.++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 4579999999999999999887532268999999999999998874 2577888888888888889999999987655
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. ++..+++++.++|+|||++++.+.
T Consensus 119 ~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 55 677899999999999999999775
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-12 Score=119.45 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeecc-CCCC--CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFAS-KQLP--YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~-~~Lp--fp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..+++.. +..+++++|+|+.|++.|+++ + .++.+..+|+ ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 45699999999999999998753 556899999999999998765 3 3578888888 6666 778899999987
Q ss_pred cccccccc--------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~--------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ .+|.. ....+++++.++|||||+|+++..
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 64 33321 135689999999999999999875
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=115.87 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||.|.+..+|.+. ...+..|+|++++.+..|.++|+++.-..++..-..|++++||.|+++.++.+.. +
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-~ 90 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-R 90 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh-H
Confidence 469999999999999999874 3558999999999999999999997777666543359999999999999877766 7
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 125 DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 125 ~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|..+|+|+.|+ |...+++.|+.
T Consensus 91 P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 91 PDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHh---cCeEEEEecCh
Confidence 88999999776 66788888765
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-12 Score=120.57 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhc---CCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||+|||+|.++..|++. ..+..+++|+|+|+.|++.|+++. .++.+...+...+++++++||+|+|+.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 34579999999999998888752 123468999999999999998873 3456666677777777889999999999
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++|+.+. ...+|+++.|+++ |.+++.+..
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 8888643 2479999999998 666666643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=115.47 Aligned_cols=105 Identities=25% Similarity=0.227 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
+..+|||+|||+|.++..++.......+++++|+++.+++.++++. .++.+...|...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 3469999999999999999887522469999999999999998862 3567888888888887889999999988
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++++. +...+|.++.++|+|||.+++.+...
T Consensus 131 l~~~~-~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVP-DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCC-CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 66655 67789999999999999999887543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=122.28 Aligned_cols=100 Identities=24% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||||||-|.++.+++++. +++|+|+.+|++|.+.|+++ |+ .+.+...|..+++. +||.|+|..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 456799999999999999999982 34899999999999998766 43 47777777776654 899999999
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++.|+.. +-..+++++.++|||||.+++...
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999853 456899999999999999998764
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=117.64 Aligned_cols=100 Identities=14% Similarity=-0.035 Sum_probs=81.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH-cC----------------CCeEEEeeccCCCCCC-C
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RG----------------LPAMIGSFASKQLPYP-S 106 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e-r~----------------~~~~~~~~d~~~Lpfp-~ 106 (458)
..+|||+|||.|..+.+|+++|+ +|+|+|+|+.+++.+.+ ++ .++.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 35999999999999999999987 89999999999998533 22 3567788888777642 3
Q ss_pred CCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeC
Q 012709 107 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.||.|+-..+++|++.+. ..+++.+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 6799999988888887554 3799999999999998666644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=113.02 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=76.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++..++... +..+++++|.|+.|++.++++ +. ++.+..+|+..++ .+++||+|+|.. +.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 5699999999999999987654 456899999999999877654 44 5788888888764 357899999864 22
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+...+++.+.++|+|||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 345688899999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=115.37 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..-+++||+|||.|.++..|+.+.- +++++|+|+.+++.|++|- .++.+.+++.... .|+++||+||++.+++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GG
T ss_pred cccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhH
Confidence 3446899999999999999999853 8999999999999999983 4688888877554 5779999999999988
Q ss_pred cccc--cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQ--KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~--~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.+ +...++..+...|+|||.+++...
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 8864 234789999999999999999875
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-11 Score=109.73 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..++..+. +++++|+|+.|++.++++ +..+.+..+|....+ .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 35899999999999999998763 899999999999998875 456667777765543 458999999976554
Q ss_pred cccc--------------------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 121 WDQK--------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 121 ~~~~--------------------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.... ...++.++.++|||||.+++..+.... -.++...+++.+|....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~------------~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG------------EPDTFDKLDERGFRYEI 162 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC------------hHHHHHHHHhCCCeEEE
Confidence 4321 235799999999999999998753310 13445566666776665
Q ss_pred ee
Q 012709 181 QQ 182 (458)
Q Consensus 181 ~~ 182 (458)
..
T Consensus 163 ~~ 164 (179)
T TIGR00537 163 VA 164 (179)
T ss_pred EE
Confidence 43
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=126.12 Aligned_cols=100 Identities=25% Similarity=0.319 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
.+..+|||||||+|.++.++++.. ..+|+|+|+|++|++.|+++. ..+.+...|...+ +++||.|++..++.|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 345699999999999999998752 348999999999999998873 3456666665544 478999999988887
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.. +...+++++.++|||||++++...
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 743 346899999999999999999875
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=113.52 Aligned_cols=101 Identities=23% Similarity=0.300 Sum_probs=81.3
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC---CCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp---fp~~sFD~I~~~~ 116 (458)
..+|||||||+|.++..++.+. +..+++|+|+++.+++.|+++ +. ++.+..+|+..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3589999999999999999864 677999999999999988765 22 6788888876653 5667999999876
Q ss_pred ccccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .+|.... ..+++++.|+|||||.|++...
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 4454321 4689999999999999999874
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=113.44 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=95.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++. .++.+...|...++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 457999999999999999998653 8999999999999998762 25778888877765 78999999988
Q ss_pred cccccc-cHHHHHHHHHhcccCCcEEEEEeCCCCccc--------cccc----HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQA--------FLRN----KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~--------~~~~----~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++|++. +...+++++.+++++++++.+..... ... +... ......-+++.++++..+|+.+..+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKTA-WLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCch-HHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 888753 34578999999999877766543211 000 0000 0000112567788888888888654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-11 Score=100.96 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCC-CCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++++. +..+++++|+|+.+++.|+++ + .++.+...+... ++...++||.|++..+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 4599999999999999999864 446899999999999998764 2 246666666544 33334689999987642
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
. ....+++++.++|+|||++++..
T Consensus 99 ~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 G----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 23479999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-10 Score=106.08 Aligned_cols=118 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++++ +..+++++|+++.+++.|+++ +. ++.+..++.. .+++ ++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCc
Confidence 34699999999999999998864 567999999999999998765 22 4566666653 3343 679999987642
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
. ....++.++.++|+|||++++..... ....++...+++.+|+.+.
T Consensus 108 ~----~~~~~l~~~~~~Lk~gG~lv~~~~~~------------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 108 G----NLTAIIDWSLAHLHPGGRLVLTFILL------------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred c----CHHHHHHHHHHhcCCCeEEEEEEecH------------hhHHHHHHHHHHCCCCcce
Confidence 2 33568899999999999999876421 1234555677777886554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=116.31 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ +. ++.+..+|....++++ +|+|++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 345799999999999999999875 6779999997 7888888765 33 4678888877666653 69999998
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++++|.++. ..+|+++++.|+|||++++.+...
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 888786543 479999999999999999998644
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-10 Score=103.32 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC-eEEEe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS 96 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~-~~~~~ 96 (458)
+.-.+.+.+.+... ...+|||+|||+|.++..+++++ +..+++++|+++.+++.|+++ +.. +.+..
T Consensus 17 d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~ 87 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQ 87 (170)
T ss_dssp HHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccc
Confidence 34444555555432 34689999999999999999875 566799999999999999775 444 77777
Q ss_pred eccCCCCCCCCCeeEEEeccccccccc----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 97 FASKQLPYPSLSFDMLHCARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 97 ~d~~~Lpfp~~sFD~I~~~~~l~~~~~----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.|... +.++++||+|+|+--++.-.. ...+++.+..+.|||||.+++...
T Consensus 88 ~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 88 SDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp SSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 66543 344689999999865333322 124789999999999999987664
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=108.12 Aligned_cols=136 Identities=17% Similarity=0.272 Sum_probs=99.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC-CCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp-~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.+. +++++|+++.+++.++++ +. ++.+...+....+.. .++||+|+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 356999999999999999988653 699999999999988775 33 467777777666544 378999999987
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc-------------cc-HH---HHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-------------RN-KE---NQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-------------~~-~e---~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+.+.. ++..+++++.++|+|||.++++.......... .. .. ......++.++++..+++.+.
T Consensus 122 l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 122 LEHVP-DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred HHhCC-CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 66655 77889999999999999999987643210000 00 00 000124577788888898887
Q ss_pred eee
Q 012709 181 QQD 183 (458)
Q Consensus 181 ~~~ 183 (458)
...
T Consensus 201 ~~~ 203 (224)
T TIGR01983 201 VKG 203 (224)
T ss_pred eee
Confidence 553
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-10 Score=112.91 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC--eEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~--~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ +.. +.+...+ ..+..+++||+|+++..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~- 234 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL- 234 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC-
Confidence 47999999999999998887653 4899999999999999876 222 2333332 23445678999999753
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ ....++.++.++|||||++++++.
T Consensus 235 ~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 235 AE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 21 234689999999999999999986
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=110.66 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=98.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC-CCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp-fp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..+++.+. +++++|+++.+++.|+++ +..+.+...+....+ ..+++||+|+++.++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 456899999999999999988653 799999999999988875 445666666666554 345789999999887
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc--------------ccHHHHH---HHHHHHHHHHhhccEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL--------------RNKENQK---RWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~--------------~~~e~~~---~w~~i~~l~~~~~w~~v~~ 181 (458)
.+.. ++..+|+++.++|+|||.++++.+........ ....... .-.++.+++...+++.+..
T Consensus 125 ~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 125 EHVP-DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hccC-CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 7665 66789999999999999999987643211000 0000000 1245777888888888865
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
.
T Consensus 204 ~ 204 (233)
T PRK05134 204 T 204 (233)
T ss_pred e
Confidence 4
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=112.63 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC--eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~--~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||||||-|.++.+++++. +.+|+|+++|++|.+.++++ |.. +++...|-..+ .+.||-|+|..
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvg 145 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPFDRIVSVG 145 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---ccccceeeehh
Confidence 456899999999999999999973 34999999999999988875 443 55555554444 35599999999
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
++.|+.. +-..+|+.+.++|+|||.+++.+....
T Consensus 146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 9999874 355899999999999999999876543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-11 Score=115.74 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCC------eEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP------AMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~------~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..+.++|+|||+|..++-++... . +|+|+|+|+.|++.|.+.... ......+...|--.++|.|+|+|.+|
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~-k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY-K--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh-h--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 33589999999997777777753 3 899999999999999887322 22222222233223799999999998
Q ss_pred cccccccHHHHHHHHHhcccCCc-EEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGG-YFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG-~liis~ 146 (458)
+||. +.+++++++.|+||+.| .+++-.
T Consensus 110 -~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 110 -VHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred -HHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 8888 45779999999998876 555544
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=113.88 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchhHHHH-hhcCCccceEEEEcCCHHHHHHHHHcC-------CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHL-FSKELLTMCIANYEASGSQVQLTLERG-------LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~L-a~~~~~~~~v~gvD~S~~~i~~A~er~-------~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
.+++|+|||||.|.++..+ +....+..+++++|.++++++.|++.- ..+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6689999999988554443 434457779999999999999998752 25888888887764334789999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 116 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 116 ~~l~~~~-~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++++|. .+..++|+++.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 567799999999999999999986
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=118.65 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred ceeccccccCc--cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH
Q 012709 8 QISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT 85 (458)
Q Consensus 8 ~~~F~~~~~~f--d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A 85 (458)
.+.|...+..| ++.+.-.+.+.+.++. ....+|||+|||+|.++..+++++ +..+++++|+|+.+++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 268 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 34455555555 2345555555555542 122589999999999999999875 567999999999999999
Q ss_pred HHc----CC----CeEEEeeccCCCCCCCCCeeEEEecccccccc---cc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 86 LER----GL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 86 ~er----~~----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~---~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++ +. ++.+...|... .+++++||+|+|+-.++... .+ ..++++++.++|+|||.|+++..
T Consensus 269 ~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 269 RLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 875 22 34555555432 23456899999987654322 11 23789999999999999999863
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=111.66 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..++++..+...|+++|+++ |. ...++.+..+|+...+ +.+++||+|+|+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 456999999999999999998754556899999988 21 2245778888887753 667899999997
Q ss_pred cccccccccH-----------HHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~-----------~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ .++..++ ..+|+++.++|||||.|++..+
T Consensus 125 ~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 125 MA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 54 4443221 3589999999999999999775
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=110.91 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=78.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH-HcCC----------------CeEEEeeccCCCCCC-C
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 106 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~-er~~----------------~~~~~~~d~~~Lpfp-~ 106 (458)
..+|||+|||.|..+.+|+++|+ +|+|+|+|+.+++.+. ++++ ++.+.++|...++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35999999999999999999887 8999999999999763 3333 356677887777533 2
Q ss_pred CCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEE
Q 012709 107 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis 145 (458)
+.||.|+-..++++++... .+++..+.++|+|||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999888888887543 48999999999999975543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=109.49 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|..+..+++......+++++|+++++++.|+++ +. ++.+..+|........++||+|++..+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 446999999999999998887532345899999999999988765 33 367888887665445578999999876
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+. ..++.++|+|||++++..
T Consensus 152 ~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh-------hHHHHHhcCcCcEEEEEE
Confidence 5443 247889999999998865
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-10 Score=111.52 Aligned_cols=158 Identities=13% Similarity=0.017 Sum_probs=103.6
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHH----HHHHHHHcCCCe
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----QVQLTLERGLPA 92 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~----~i~~A~er~~~~ 92 (458)
.|-..+.+...++..+....+.+.. ....+|||+|||+|.++.++++..-+...|+++|+++. +++.|.++ .++
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~I-kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI 183 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPI-KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNI 183 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceecc-CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCC
Confidence 4666677778888777544444433 34469999999999999999987544568999999986 45555544 456
Q ss_pred EEEeeccCC---CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHH
Q 012709 93 MIGSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169 (458)
Q Consensus 93 ~~~~~d~~~---Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~ 169 (458)
.+...|+.. +..+.++||+|++... . ++....++.++.++|||||+|++....... ....+++..-. +++ +
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ika~~i-d~g~~pe~~f~-~ev-~ 257 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIKANCI-DSTAKPEVVFA-SEV-Q 257 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEecccc-ccCCCHHHHHH-HHH-H
Confidence 666677643 2223468999998753 2 323346777999999999999996443221 11122333222 445 5
Q ss_pred HHHhhccEEEEee
Q 012709 170 FVENLCWELVSQQ 182 (458)
Q Consensus 170 l~~~~~w~~v~~~ 182 (458)
.++..+|+.+.+.
T Consensus 258 ~L~~~GF~~~e~v 270 (293)
T PTZ00146 258 KLKKEGLKPKEQL 270 (293)
T ss_pred HHHHcCCceEEEE
Confidence 5677788766543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=115.05 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH---HHHHc-CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER-GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~---~A~er-~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+++|||||||.|.++..++.+|.. .|+|+|++.-... ++++- +. .+.......+.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 4579999999999999999998754 7999999986432 22222 22 23334457888887 689999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccc---------cc--ccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA---------FL--RNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~---------~~--~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
++|.. +|-..|+++...|+|||.+++-+....-.. +. ++.-....-..+...+++.+|+.+.
T Consensus 192 LYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 192 LYHRR-SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred hhccC-CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 99977 778899999999999999998765431100 00 0000011125677777777877665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-10 Score=115.90 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=78.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
.+|||+|||+|.++..++++. +..+++++|+|+.|++.|+++ +....+...|... ..++.||+|+|+..++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 489999999999999999864 456899999999999988764 4555666555433 235789999999875542
Q ss_pred c----ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 D----QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~----~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .....+++++.+.|||||.++++..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 1235799999999999999999875
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-10 Score=107.60 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=87.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCC----CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQL----PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~L----pfp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|.++..+++.. ...+|+++|+++.|++.+.++ ..++.+..+|.... +++ ++||+|++..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 44699999999999999998864 245899999999988855433 13566777776531 233 5699999652
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
. . +.....++.++.|+|||||+++++.+... ..+...+ ....++..+.++..+|+.+....
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~-~d~~~~~--~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARS-IDVTKDP--KEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEeccc-ccCcCCH--HHHHHHHHHHHHHcCCeEEEEEc
Confidence 2 1 11223568999999999999999643211 1111111 12234445777778888776543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-10 Score=104.40 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=90.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC-C-CCCCCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~-L-pfp~~sFD~I~~~~~l~~~~ 122 (458)
..+|||+|||+|.++..+++.. ...++++|+|+++++.|+++++ .+..+++.. + ++++++||+|+|+.+++|..
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 3589999999999999987653 3368999999999999987764 455566544 4 47788999999999877665
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcc--------------------cccc-cHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------------------AFLR-NKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~--------------------~~~~-~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
++..+++++.|++++ .+++.+..... .+.. ........+++.+++++.+++.+..
T Consensus 90 -d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 90 -NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred -CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 678899999887664 44443322100 0000 0111223567888888888888775
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
.
T Consensus 166 ~ 166 (194)
T TIGR02081 166 A 166 (194)
T ss_pred E
Confidence 4
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-11 Score=116.27 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-C-CCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-P-YPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-p-fp~~sFD~I~~~~~l~~~ 121 (458)
.-+++||+|||||..+..|...-. +++|+|+|++|+++|.+++..-.+.+++...+ + ..++.||+|++..|+...
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 367999999999999999987543 79999999999999999988666666665432 2 456789999999985554
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCccccccc-HHHHHH--HHHHHHHHHhhccEEEEeee
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN-KENQKR--WNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~-~e~~~~--w~~i~~l~~~~~w~~v~~~~ 183 (458)
- +.+.++.-+...|+|||.|+||.-.....+.... +..+.. -.-+...++..+++.+..+.
T Consensus 202 G-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 202 G-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred c-chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 4 6677999999999999999999754322110010 111111 23456778888998887664
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-09 Score=105.96 Aligned_cols=98 Identities=22% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...++||||+|.|..+..++... . +|+++|.|..|....++||..+. +..+..-.+.+||+|.|.++ +.-..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~--~v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-K--EVYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-c--eEEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhccC
Confidence 45689999999999999998753 3 79999999999999999986533 33333333567999999986 67777
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+|..+|+++++.|+|+|+++++.-.+
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 89999999999999999999986444
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=107.47 Aligned_cols=100 Identities=25% Similarity=0.272 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc-CCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~-~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...-|||||||+|..+..|...|. ..+|+|+|+.|++.|.++-+...+...|+ +-+||+.++||.+++..+ ++|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeee
Confidence 456899999999999999998875 79999999999999998755544444443 668999999999998754 4552
Q ss_pred -------ccHH----HHHHHHHhcccCCcEEEEEeC
Q 012709 123 -------QKDG----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 -------~~~~----~~L~ei~RvLkPGG~liis~~ 147 (458)
.+|. .++..++.+|++|++.++...
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 1222 467789999999999999875
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=99.39 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=79.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC--CCCCCeeEEEeccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP--YPSLSFDMLHCARC 117 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~ 117 (458)
.+|||+|||+|.++..+++.+ ..+++++|+++..++.|+++ + .++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999886 45999999999999999876 2 36788998887764 78899999999865
Q ss_pred cccccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~-------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 443221 123689999999999999999864
|
... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-10 Score=107.06 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..+++...+..+++++|+++.+++.|+++ +. ++.+..+|......+.+.||+|++....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 457999999999999999887643446899999999999999876 33 5788888877665566889999987653
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+ ....+.+.|||||++++..
T Consensus 156 ~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 PD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc-------chHHHHHhhCCCcEEEEEE
Confidence 22 2346677899999999864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=103.76 Aligned_cols=118 Identities=20% Similarity=0.173 Sum_probs=85.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+..+|.... +..++.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 446999999999999999876532345899999999999988765 3 2566777776543 33346899999853
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~ 177 (458)
. ......++.++.++|||||++++.... ....+++...+++.+|+
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~~------------~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAIL------------LETVNNALSALENIGFN 164 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEeec------------HHHHHHHHHHHHHcCCC
Confidence 2 224567999999999999999985531 12234555666667774
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=111.02 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------CCeEEEeeccCCCCCCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----------~~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
..+|||+|||+|.++..|++++. +|+|+|+|+.|++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 46999999999999999998764 8999999999999998872 1345666665443 578999999
Q ss_pred ccccccccccHH-HHHHHHHhcccCCcEEEEEeCCCCccccc--------ccH-----HHHHHHHHHHHHHHhhccEEEE
Q 012709 115 ARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNPQAFL--------RNK-----ENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 115 ~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~~~~~--------~~~-----e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..+++|++.+.. .+++.+.+ +.+||. +++..+....... ..+ .....-++++++++..+|+...
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 999888875433 45666664 455555 4444322110000 000 0000125677888888888664
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.3e-10 Score=106.25 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ +.++.+...|... .+++++||+|+|+-....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 46999999999999999988642 4899999999999988765 4566677777654 356678999999743222
Q ss_pred ccc--------------------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~--------------------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.. ....+++++.++|||||.+++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 111 023577889999999999998764
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=104.91 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..+++.+.. +++++|+|+.+++.|+++.....+. +...++..+.+||+|+|+.. . .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~~fD~Vvani~-~---~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDLKADVIVANIL-A---N 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCCCcCEEEEcCc-H---H
Confidence 4579999999999999988876642 6999999999999998762110000 00011122227999998743 1 1
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
....++.++.++|||||++++++... ...+.+...+...+|..+..
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~------------~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILE------------EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcH------------hhHHHHHHHHHHCCCEEEEE
Confidence 23468899999999999999997632 12345666777778877654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=116.67 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=83.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC--CCCCCCeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L--pfp~~sFD~I~~~~~ 117 (458)
...+||||||+|.++..++.+. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .++++++|.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4589999999999999999975 677999999999998877655 33 677888887654 578899999998764
Q ss_pred cccccccH------HHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~------~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+|+... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5665432 4689999999999999999763
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=100.15 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..++|||+|||+|.++..+++++ .+++++|.|+.+++.++++ +.. +.+...|... ++++.+||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 34689999999999999999874 4899999999999988665 322 6666666544 45556899999875
Q ss_pred cccccc--------------------ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 117 CGVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 117 ~l~~~~--------------------~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
.+.+.. .....+++++.++|||||.+++..+... . .+.+..+..+.+|
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~------~------~~~l~~~~~~~g~ 166 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT------G------EDEVLEYLEKLGF 166 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC------C------HHHHHHHHHHCCC
Confidence 433211 0123579999999999999988765221 1 1345566777787
Q ss_pred EEEE
Q 012709 177 ELVS 180 (458)
Q Consensus 177 ~~v~ 180 (458)
+...
T Consensus 167 ~~~~ 170 (188)
T PRK14968 167 EAEV 170 (188)
T ss_pred eeee
Confidence 6654
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-10 Score=105.45 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
+..+|||||||+|.++..|++.+. +++++|+|+.|++.|+++ +. ++.+..+| ++..+++||+|+|..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 456999999999999999998764 799999999999999876 22 45666665 4455688999999998
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEE
Q 012709 118 GVDWDQK-DGILLLEVDRVLKPGGYF 142 (458)
Q Consensus 118 l~~~~~~-~~~~L~ei~RvLkPGG~l 142 (458)
++|+... ...+++++.+++++++.+
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 8787643 347888888877544443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.4e-10 Score=105.64 Aligned_cols=97 Identities=21% Similarity=0.148 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|.++..|++......+|+++|+++.+++.|+++ +. ++.+..+|........+.||+|++..+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 3457999999999999999988754345799999999999998876 33 577888887655444468999998754
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
..+ +...+.+.|+|||++++..
T Consensus 156 ~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccc-------ccHHHHHhcCcCcEEEEEE
Confidence 322 3456788999999999865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-10 Score=109.71 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCC-CCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~-~sFD~I~~~~~l 118 (458)
++++|||+|||+|.++...++.|.. .++|+|+.+.+++.|+++ +++..........+..+. +.||+|+|+-.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 5679999999999999999998864 799999999999998876 343211111112223333 58999999842
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
-+ -..++..++.+.|||||++++|+... ..-+.+.+.+.+.+|.++...
T Consensus 239 A~---vl~~La~~~~~~lkpgg~lIlSGIl~------------~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AE---VLVELAPDIKRLLKPGGRLILSGILE------------DQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HH---HHHHHHHHHHHHcCCCceEEEEeehH------------hHHHHHHHHHHhCCCeEeEEE
Confidence 22 22368889999999999999998522 123445566666788777643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=102.56 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=87.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++..++... +..+++++|+++.+++.|+++ +. ++.+..+|... ++++++||+|+|+-...
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3589999999999999999853 456899999999999988765 33 37777777655 46678999999964322
Q ss_pred c------cccc-------------------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhh
Q 012709 120 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENL 174 (458)
Q Consensus 120 ~------~~~~-------------------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 174 (458)
. +... ...++.++.++|+|||.+++..... .-+.+.+.+.+.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-------------~~~~~~~~l~~~ 232 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-------------QGEAVRALFEAA 232 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-------------HHHHHHHHHHhC
Confidence 1 1100 1256889999999999999975311 113456666667
Q ss_pred ccEEEE
Q 012709 175 CWELVS 180 (458)
Q Consensus 175 ~w~~v~ 180 (458)
+|+.+.
T Consensus 233 gf~~v~ 238 (251)
T TIGR03534 233 GFADVE 238 (251)
T ss_pred CCCceE
Confidence 776554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=108.81 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=94.9
Q ss_pred ceeccccccCc--cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH
Q 012709 8 QISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT 85 (458)
Q Consensus 8 ~~~F~~~~~~f--d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A 85 (458)
.+.|-...-.| +..+.-.+.+.+.++.. ...+|||+|||.|.++..|++.. |..+++-+|++..+++.|
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESA 198 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHH
Confidence 34555555555 55666667777777542 22389999999999999999976 578999999999999999
Q ss_pred HHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHH----HHHHHHHhcccCCcEEEEEeC
Q 012709 86 LER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 86 ~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~----~~L~ei~RvLkPGG~liis~~ 147 (458)
+++ ++....+..+....+..+ +||+|+|+--++.-..-.. +++.+..+.|++||.|.++..
T Consensus 199 r~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 199 RKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 887 333312222223344554 8999999977655433222 789999999999999999986
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=108.67 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=83.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+.++|||+|||+|.++...++.|.. +|+++|+++.+++.|+++ ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 4469999999999999999998754 899999999999998887 4444443322 22344589999998842 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+ -...++..+.++|+|||++++|+... ...+.+.+.+++ +|+.+...
T Consensus 236 ~---vL~~l~~~~~~~l~~~G~lIlSGIl~------------~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 236 D---VLLELAPDIASLLKPGGYLILSGILE------------EQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp H---HHHHHHHHCHHHEEEEEEEEEEEEEG------------GGHHHHHHHHHT-TEEEEEEE
T ss_pred H---HHHHHHHHHHHhhCCCCEEEEccccH------------HHHHHHHHHHHC-CCEEEEEE
Confidence 1 12357778999999999999998622 123445555666 88877654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=87.91 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=76.6
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCC-CCCCeeEEEecccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 120 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpf-p~~sFD~I~~~~~l~~ 120 (458)
+|+|+|||+|.++..+++. ...+++++|.++.+++.+++. ..+..+...+...... ..++||+|++..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999872 345999999999999888722 2356666666666543 5578999999987555
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEE
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
+......+++.+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3556678999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=108.98 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCC-CCCCCC----CeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSL----SFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~-Lpfp~~----sFD~I 112 (458)
+..+|||+|||+|..+..|++......+++++|+|++|++.|+++ +.++....+|... ++++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 346899999999999999988742245899999999999988775 2345667788765 344433 23344
Q ss_pred Eeccccccccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++...+.++.. +...+|+++.++|+|||.|++.....
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44445555543 23479999999999999999977544
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=101.98 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEcCCHHHHHHHHHcC--------CCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEE
Q 012709 73 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 73 ~gvD~S~~~i~~A~er~--------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~lii 144 (458)
+|+|+|++|++.|+++. .++.+..+|+.++|+++++||+|+++.+++++. ++.++|+|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEE
Confidence 48999999999997652 257899999999999999999999998876665 778899999999999999999
Q ss_pred EeCCC
Q 012709 145 TSPLT 149 (458)
Q Consensus 145 s~~~~ 149 (458)
.+...
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 98643
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=109.32 Aligned_cols=102 Identities=21% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||.|||+|.++..++..+ ..++|+|+++.|++.|+++ +. .+.+..+|+.++|+++++||+|+++-.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 345689999999999988877654 3899999999999988766 33 357888899999988889999999632
Q ss_pred ccc---cc-----ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVD---WD-----QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~---~~-----~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-. .. .....++.++.++|||||++++..+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 110 01 1135799999999999999999876
|
This family is found exclusively in the Archaea. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-09 Score=96.95 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH----cCCC--eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e----r~~~--~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.+...|++.+++ ..++|+|.|+.+++.|+. ++.+ +.+.++|+..-.+..+.||+|+--.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 33449999999999999999999874 349999999999987653 3554 8899999888778888999998533
Q ss_pred cccc--cc-----ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVD--WD-----QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~--~~-----~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+-. .. ..+..++..+.++|+|||.|++...+.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 2111 11 112357889999999999999988643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.6e-09 Score=103.47 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++++. +..+++++|+|+.+++.|+++ +. ++.+..+|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999864 456899999999999999876 43 46777777643 3455689999997211
Q ss_pred cc----------cccc--------------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VD----------WDQK--------------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~----------~~~~--------------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. +..+ ...++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 0001 13578899999999999998664
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=100.14 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~~ 114 (458)
....+|||+|||+|.++..++++.....+++++|+++.+ ....+.+..+|..+.+ +++++||+|+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 345799999999999999998765445679999999865 2234566666765542 45678999998
Q ss_pred ccccc---cccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~---~~~~-------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.. .|.. ....++.++.++|+|||++++...
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 64311 1111 125789999999999999999754
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=106.72 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCC-CCCeeEEEecccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 120 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~ 120 (458)
.+|||+|||+|.++..++... +..+++++|+|+.|++.|+++ +.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999988753 456899999999999999876 45678888887544332 357999999753221
Q ss_pred cc--------------------cc----HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 121 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 121 ~~--------------------~~----~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
-. .+ ..+++.++.+.|+|||.+++..... .-+.+.+++.+.+|
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-------------Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-------------QGAAVRGVLAENGF 398 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-------------HHHHHHHHHHHCCC
Confidence 10 00 1256667788999999988765311 12356666776777
Q ss_pred EEEEe
Q 012709 177 ELVSQ 181 (458)
Q Consensus 177 ~~v~~ 181 (458)
..+..
T Consensus 399 ~~v~v 403 (423)
T PRK14966 399 SGVET 403 (423)
T ss_pred cEEEE
Confidence 65543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=99.45 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=90.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
.++|||+|||+|..+..++++. +..+++++|+.+.+.+.|+++ ..++.+...|...+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 6799999999999999999974 347999999999999999887 236788888877763 4445799999985
Q ss_pred ccccccc-----------------cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 117 CGVDWDQ-----------------KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 117 ~l~~~~~-----------------~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
-.+.-.. +-+..++...++|||||++.++-++. ...++-.++.+..|...
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-------------rl~ei~~~l~~~~~~~k 190 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-------------RLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------HHHHHHHHHHhcCCCce
Confidence 4333211 22457888999999999999997621 23345566666566544
Q ss_pred E
Q 012709 180 S 180 (458)
Q Consensus 180 ~ 180 (458)
.
T Consensus 191 ~ 191 (248)
T COG4123 191 R 191 (248)
T ss_pred E
Confidence 4
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-09 Score=100.48 Aligned_cols=100 Identities=15% Similarity=-0.023 Sum_probs=84.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------------CCCeEEEeeccCCCCCC--
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------------GLPAMIGSFASKQLPYP-- 105 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------------~~~~~~~~~d~~~Lpfp-- 105 (458)
..+||+.|||.|....+|+++|+ +|+|+|+|+.+++.+.+. +..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46999999999999999999987 899999999999987552 44678889998888642
Q ss_pred -CCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeC
Q 012709 106 -SLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 -~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.||+|+=..++++++.+.. ++.+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 268999998888888876544 899999999999999888765
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=101.63 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=82.4
Q ss_pred CEEEEECCCCchhHHHHhhcCCcc--ceEEEEcCCHHHHHHHHHcCC------CeEEEeeccCCC--CCCCCCeeEEEec
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLT--MCIANYEASGSQVQLTLERGL------PAMIGSFASKQL--PYPSLSFDMLHCA 115 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~--~~v~gvD~S~~~i~~A~er~~------~~~~~~~d~~~L--pfp~~sFD~I~~~ 115 (458)
.+||+||||.|.....+++-. ++ ..+.+.|.|+.+++..+++.. .+.+.+++...+ |.+.+++|.|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 389999999999998888753 34 789999999999999887722 233344433333 5677999999999
Q ss_pred ccccccccc-HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 116 RCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 116 ~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+++-.+..+ ...++.+++++|||||.+++-+.+.+
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 998777654 45899999999999999999987663
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=100.31 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..++... +..+++++|+|+.+++.|+++. .++.+...|... ++++++||+|+|+...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 44689999999999999998864 4568999999999999998762 256777777633 3345789999996332
Q ss_pred cccc-------------------------ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWD-------------------------QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~-------------------------~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.... .....++.++.++|+|||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2110 011357788889999999999954
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=97.56 Aligned_cols=95 Identities=19% Similarity=0.096 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||+|||+|.++..+++... +++++|+++.+++.|+++ +. ++.+..+|......+.++||+|++..+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 3457999999999999998887642 799999999999998876 33 467777775443223478999999765
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+ +..++.+.|+|||.+++...
T Consensus 154 ~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh-------hhHHHHHhcCCCcEEEEEEc
Confidence 332 34567899999999999764
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-08 Score=98.91 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc-
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG- 118 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l- 118 (458)
.+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|... ++++.+||+|+|+--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999999864 456899999999999999876 33 37777777644 3455589999996211
Q ss_pred ------------cccc-----------ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 ------------VDWD-----------QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ------------~~~~-----------~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+-+ .....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1110 0123678899999999999988764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=101.19 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=75.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|... ++++++||+|+|+--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 589999999999999998864 567899999999999999876 33 47777777543 23456899999973211
Q ss_pred -------------cccc-------c----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 -------------DWDQ-------K----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 -------------~~~~-------~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+. + ...+++++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1000 0 13678899999999999998653
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=96.07 Aligned_cols=98 Identities=20% Similarity=0.147 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++ +. ++.+..+|+.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 44699999999999999987643 456899999999999998775 32 46677666543 222223467665421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
......+++++.++|+|||++++..+
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 22446799999999999999999875
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.4e-09 Score=105.18 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------------CCeEEEeeccCCC----CC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQL----PY 104 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------------~~~~~~~~d~~~L----pf 104 (458)
...+|||+|||.|.-..-+...++ ..++|+|++...|+.|++|. ..+.+..+|.... -+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 567999999998877777766654 38999999999999998884 3455666664322 13
Q ss_pred C--CCCeeEEEeccccccccccHH---HHHHHHHhcccCCcEEEEEeC
Q 012709 105 P--SLSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 105 p--~~sFD~I~~~~~l~~~~~~~~---~~L~ei~RvLkPGG~liis~~ 147 (458)
+ ...||+|-|-+++|+.....+ .+|+.+...|+|||+|+.+.+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3 359999999998777654443 689999999999999999997
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.88 E-value=9e-09 Score=98.02 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=95.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....++||.|||-|..+..++...+. +|..+|+.+..++.|++.- ....+.+...+++..+.++||+|.+-+|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 34679999999999999988765544 8999999999999999652 2245666667776544579999999999
Q ss_pred cccccccHH-HHHHHHHhcccCCcEEEEEeCCCCcccccccHHH---HHHHHHHHHHHHhhccEEEEeeec
Q 012709 118 GVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---QKRWNFVRDFVENLCWELVSQQDE 184 (458)
Q Consensus 118 l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~---~~~w~~i~~l~~~~~w~~v~~~~~ 184 (458)
+.|.+++.- .+|+.+...|+|+|.+++-+.........-+.+. ...-+.+.++.++.+++++.++.+
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 999986433 8999999999999999998875533211112221 122467888999999999987653
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.6e-08 Score=97.78 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------CCCeEEEeeccCCC-CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQL-PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------~~~~~~~~~d~~~L-pfp~~sFD~ 111 (458)
..+++||++|||.|..+..+++.. ...+|+++|+++.+++.|++. ..++.+...|+... ...+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346799999999999999998752 235899999999999999875 23567777776542 334678999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++... .++... ...+++.+.+.|+|||.+++...
T Consensus 154 Ii~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998632 232211 14678999999999999998653
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=105.63 Aligned_cols=106 Identities=17% Similarity=0.262 Sum_probs=79.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
....+|||+|||+|..+.+++++. ...+++++|+++.+++.++++ +..+.+..+|+..++ ++.++||.|++.-
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 345799999999999999999865 236899999999999988766 556778888877654 3457899999432
Q ss_pred ----c--c-----cccccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 ----C--G-----VDWDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ----~--l-----~~~~~~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. + ..|... ..++|.++.++|||||++++++...
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 0 011111 1268999999999999999998644
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=98.60 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=89.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||+|.++..++.+. ...+++++|+++.|++.|+++..++.+...|+..+.. +++||+|+++-.+.+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3589999999999998887753 2358999999999999999886678888888877653 4689999998776664221
Q ss_pred -------------------HHHHHHHHHhcccCCcEEEEEeCCC-CcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 125 -------------------DGILLLEVDRVLKPGGYFVWTSPLT-NPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 125 -------------------~~~~L~ei~RvLkPGG~liis~~~~-~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
...++....++|+|+|.+.+.-... .++... .-++.+.+++..++....
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl-------~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTM-------KSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccC-------CHHHHHHHHHhcCcEecC
Confidence 1246677789999999877653221 111111 124556677777765543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.7e-09 Score=97.69 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=90.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.....++|||||.|....+|...++. +++-+|.|..|++.++.- ++.....++|.+.|+|.+++||+|+++.. .
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-l 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-L 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-h
Confidence 34458999999999999999998864 899999999999998765 45667788899999999999999999965 8
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
||.++....+.++...|||.|.|+-+....
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 999887789999999999999999886544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-08 Score=97.76 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=84.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+.++|+|||+|.|.++..++++. |..+++..|. +..++.+++ ..++.+..+|.. -++|. +|+++..+++++|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 345799999999999999999865 7889999999 888888888 678999999987 67775 99999999999998
Q ss_pred ccHH-HHHHHHHhcccCC--cEEEEEeCCC
Q 012709 123 QKDG-ILLLEVDRVLKPG--GYFVWTSPLT 149 (458)
Q Consensus 123 ~~~~-~~L~ei~RvLkPG--G~liis~~~~ 149 (458)
++.. .+|+++++.|+|| |++++.+...
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 6543 8999999999999 9999999754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.4e-08 Score=92.69 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
....|.|+|||.+.++..+.. ++ .|...|.... +-.+...|+..+|+++++.|++++... -+-.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~-~~---~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLS--LMGT 135 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN-KH---KVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLS--LMGT 135 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CCEEEEECCCchHHHHHhccc-Cc---eEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhh--hhCC
Confidence 346899999999999977653 22 6888888642 234677899999999999999998643 3445
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+-..++.|+.|+|||||.|.+++..... ...+...+..+++||+...+.
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEecc
Confidence 6678999999999999999999862211 123456677889999998865
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=97.44 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCC-CCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQL-PYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~L-pfp~~sFD~I~~~ 115 (458)
..+++|||||||.|.++.++++.. +..+++++|+++++++.|+++ ..++.+..+|+... .-..++||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345799999999999999998754 677999999999999999986 13567777775432 2223689999975
Q ss_pred ccccc--ccc--cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVD--WDQ--KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~--~~~--~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. +.. .+. ....+++++.++|+|||.+++...
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 2 111 111 125799999999999999999643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=97.75 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------CCCeEEEeeccCC-CCCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~~~~~~~~~d~~~-Lpfp~~sF 109 (458)
..+++||++|||+|...+.+++.. +..+|+.+|+++++++.|++. ..++.+...|+.. +.-.+++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 456799999999999999988753 346899999999999999962 3467777777655 33345789
Q ss_pred eEEEeccccccccc-----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVDWDQ-----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~~~~-----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|++... -+... ....+++.+.+.|+|||.+++...
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99998731 21110 113689999999999999988754
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.5e-08 Score=102.09 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEE--EeeccCCCCC--CCCCeeEEEe-
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHC- 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~--~~~d~~~Lpf--p~~sFD~I~~- 114 (458)
...+|||+|||+|..+.++++.. +..+++++|+++.+++.++++ +..+.+ ..+|....++ +.++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 45799999999999999998764 256899999999999988766 554433 5555544443 5678999995
Q ss_pred ---cc--ccccccc-----c----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ---AR--CGVDWDQ-----K----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ---~~--~l~~~~~-----~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+. ++.+.++ . ..++|.++.++|||||++++++...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 21 2221111 1 2468999999999999999998755
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=93.25 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCc----hhHHHHhh--cCC--ccceEEEEcCCHHHHHHHHHc--------C------------------
Q 012709 44 GVRTILDIGCGYG----SFGAHLFS--KEL--LTMCIANYEASGSQVQLTLER--------G------------------ 89 (458)
Q Consensus 44 ~~~~VLDVGCG~G----~~~~~La~--~~~--~~~~v~gvD~S~~~i~~A~er--------~------------------ 89 (458)
..-+|+..||++| +++..|.. ... ...+|.|+|+|+.+++.|++= +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 45555544 111 147999999999999999762 0
Q ss_pred -------CCeEEEeeccCCCCCCCCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeC
Q 012709 90 -------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 90 -------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.|...+..+.+.+.+.||+|+|.++++.+..... ++++.+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1355666666663344578999999999999886543 899999999999999999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5e-08 Score=103.50 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEe----
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHC---- 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~---- 114 (458)
...+|||+|||+|..+.++++......+++++|+|+.+++.++++ +. ++.+...|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 447999999999999988876432335899999999999988766 44 4677788877765 5578999995
Q ss_pred ccccc-------ccccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGV-------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~-------~~~~~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+..-. .|... ...+|.++.++|||||++++++...
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22110 11111 2358999999999999999998755
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=94.72 Aligned_cols=98 Identities=17% Similarity=0.085 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||||||+|++++.|+....+...|+++|..+..++.|+++ +. ++.+..+|...---+...||.|++...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSB
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeec
Confidence 3457999999999999999988644455799999999999999877 44 678888886543223467999999865
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
... .|. .+.+.||+||++++-..
T Consensus 151 ~~~---ip~----~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 151 VPE---IPE----ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BSS-----H----HHHHTEEEEEEEEEEES
T ss_pred cch---HHH----HHHHhcCCCcEEEEEEc
Confidence 432 223 46667899999999664
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.9e-08 Score=100.94 Aligned_cols=107 Identities=22% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC----CCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp----fp~~sFD~I~ 113 (458)
....+|||+|||+|..+.++++......+|+++|+++.+++.++++ |. ++.+..+|+..++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3457999999999999999987633345899999999999888765 44 5678888887765 4467899999
Q ss_pred ec----c--ccccccc-----c----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CA----R--CGVDWDQ-----K----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~----~--~l~~~~~-----~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+. . ++.+.++ . ..++|.++.++|||||++++++...
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 62 1 2111110 0 2468999999999999999998644
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-08 Score=90.60 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+..+|||+|||+|.++..+++++ .+++++|+++.+++.++++. .++.+..+|+..+++++.+||.|+++-- ++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~ 88 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YN 88 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-cc
Confidence 34689999999999999999874 38999999999999998873 3678889999998888778999998743 44
Q ss_pred ccccHHHHHHHHHhc--ccCCcEEEEEe
Q 012709 121 WDQKDGILLLEVDRV--LKPGGYFVWTS 146 (458)
Q Consensus 121 ~~~~~~~~L~ei~Rv--LkPGG~liis~ 146 (458)
.. ...+..+.+. +.++|.+++..
T Consensus 89 ~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 89 IS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 32 2234443332 45788887764
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-08 Score=96.80 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEec--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCA-- 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~-- 115 (458)
....+|||+|||+|..+..+++.......|+++|+++.+++.++++ +. ++.+...|...++...++||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3456999999999999999887533335899999999999888765 43 4677777777666555679999962
Q ss_pred --c--ccc-------cccc--------cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 --R--CGV-------DWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 --~--~l~-------~~~~--------~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ++. .+.. ...++|.++.++|||||++++++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 110 0110 11258999999999999999998644
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=99.26 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+..+|||+|||+|.++..+++.......|+++|+++.+++.|+++ +. ++.+..+|....+...++||+|++....
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 446999999999999999987643234699999999999988774 33 4677777766555445689999987542
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ ....+.+.|+|||.+++...
T Consensus 160 ~~-------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 DE-------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred HH-------hHHHHHHhcCCCCEEEEEeC
Confidence 22 23356789999999988653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=98.71 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------CCCeEEEeeccC------CCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------GLPAMIGSFASK------QLPYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------~~~~~~~~~d~~------~Lpfp~ 106 (458)
..+.++|+|||.|.-...+-+.++. .++|+|+.+..|+.|++| -.++.|..+|.. .+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4568999999999877777776764 899999999999999887 125778877743 356676
Q ss_pred CCeeEEEeccccccccccH---HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 107 LSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~---~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+||+|-|-+|+|.--... ..+|+++.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 7799999999855533222 378999999999999999998743
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=93.17 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCC-CC-CCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQL-PY-PSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~L-pf-p~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++- ....+..+|.... +- ..++||+|+++--...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3589999999999999998753 3458999999999999998762 1246666665432 21 1357999999743221
Q ss_pred cc---------------------cc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WD---------------------QK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~---------------------~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. .+ ...++..+.++|+|||++++...
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 01 12567778899999999998764
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.6e-08 Score=102.16 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
.++.+|||+|||+|..+.+++.......+|+++|+|+.+++.++++ +. ++.+...|+..++ +.+++||.|++.-
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 3456999999999999999887633346899999999999988766 44 3677788877765 4567899999621
Q ss_pred -c--ccccccc------------------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 -C--GVDWDQK------------------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 -~--l~~~~~~------------------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
| +-.+..+ ..++|.++.+.|||||++++++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1111111 1357889999999999999998754
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=91.55 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH-cCC----------------CeEEEeeccCCCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGL----------------PAMIGSFASKQLPYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e-r~~----------------~~~~~~~d~~~Lpfp~ 106 (458)
...+||..|||.|.-..+|+++|+ +|+|+|+|+.+++.+.+ ++. .+.+.++|.-.++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 345899999999999999999986 89999999999998843 322 3456778877765433
Q ss_pred -CCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEE--eCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 107 -LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT--SPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 107 -~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis--~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++||+|+=..+++-++.+. .++.+.+.++|+|||.+++. ........ . +...-.-++++++.. ..|++..-+
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~-G--PPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME-G--PPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS-S--SS----HHHHHHHHT-TTEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC-C--cCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 5799999877777776554 48999999999999994333 32221111 1 111122356777777 677666543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-07 Score=92.37 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
..+++||+||||.|.....+++. ....+++.+|+++.+++.|++. ..++.+..+|+... ..++++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34679999999999999999875 2346899999999999999885 23577777775432 123578999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++-.. .++... ...+++.+.+.|+|||.++....
T Consensus 169 Ii~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 998532 322211 13689999999999999987543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=90.82 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..+.+|||.|.|+|.++.+|+..-.+..+++.+|+.++..+.|+++ + .++.+...|..+.-+++ .||+|+.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-- 169 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-- 169 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE--
Confidence 3457999999999999999997655678999999999999999988 2 23677777877766664 8999984
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.++ +|-.++..+..+|+|||.+++..|..
T Consensus 170 ---Dmp-~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 170 ---DLP-DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ---cCC-ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 334 66789999999999999999998854
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-07 Score=88.86 Aligned_cols=99 Identities=28% Similarity=0.426 Sum_probs=75.1
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CC--CCCCCeeEEEecccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LP--YPSLSFDMLHCARCG 118 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lp--fp~~sFD~I~~~~~l 118 (458)
.+||||||.|.+...++... |...++|+|++...+..|.++ ++ ++.+..+|+.. ++ ++++++|.|+..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 89999999999999999975 788999999999988776554 43 78888888776 22 56799999998765
Q ss_pred ccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
-+|+... ..+|.++.++|+|||.+.+.+-
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5554321 3699999999999999999873
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=86.05 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=87.1
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH----HHcCCC-e-EEEeeccCCC--CC------CCCCeeEE
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-A-MIGSFASKQL--PY------PSLSFDML 112 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A----~er~~~-~-~~~~~d~~~L--pf------p~~sFD~I 112 (458)
+|||||||||..+.++++. .|.....+.|..+..+.-. .+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999985 5788899999998875322 222221 1 0112233222 22 35689999
Q ss_pred Eecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCCCcccccccH--HH-------------HHHHHHHHHHHHhhc
Q 012709 113 HCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--EN-------------QKRWNFVRDFVENLC 175 (458)
Q Consensus 113 ~~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~--e~-------------~~~w~~i~~l~~~~~ 175 (458)
+|.++ +|+..- -+.+|+.+.++|+|||.|++.+|-... +..+.+ +. ....+.+.+++.+.+
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99987 555432 247999999999999999999985522 111111 01 111267888888888
Q ss_pred cEEEEe
Q 012709 176 WELVSQ 181 (458)
Q Consensus 176 w~~v~~ 181 (458)
+.+...
T Consensus 185 L~l~~~ 190 (204)
T PF06080_consen 185 LELEED 190 (204)
T ss_pred CccCcc
Confidence 876654
|
The function of this family is unknown. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-07 Score=83.70 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
....+++|||||+|+.+..++. ..+..+++++|-++++++..+++ + .++.+..+++-.. +-. .+||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECC
Confidence 4456999999999999999994 45788999999999999877665 3 3667777765443 211 2799999876
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. - ....+|+.+...|||||++++..-
T Consensus 111 g-~----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 111 G-G----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred C-C----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 4 2 445689999999999999999764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=92.13 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=73.2
Q ss_pred CCEEEEECCCCchhHHHHhhcC--CccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~--~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
..+|||+|||+|.++..++++. .+..+|+++|+++.+++.|+++...+.+...|....++ +++||+|+|+--+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 4599999999999999887642 12458999999999999999887778888888876655 46899999985544221
Q ss_pred c-c----------HHHHHHHHHhcccCCcE
Q 012709 123 Q-K----------DGILLLEVDRVLKPGGY 141 (458)
Q Consensus 123 ~-~----------~~~~L~ei~RvLkPGG~ 141 (458)
. + ...++..+.++++||+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 0 23578888887777775
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=90.91 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.....|.|+|||.+.++. +.. ..|...|+.. ++-.+...|+.++|+++++.|++++. +--+-
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~---~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~C--LSLMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER---HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFC--LSLMG 240 (325)
T ss_pred cCceEEEecccchhhhhh---ccc---cceeeeeeec----------CCCceeeccccCCcCccCcccEEEee--Hhhhc
Confidence 445689999999998775 222 2677888753 34557778899999999999999974 44455
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
.+...+++|++|+|+|||.+++++.-..+ ..-..+...+..++|.......
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAEv~SRf----------~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAEVKSRF----------SDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEehhhhc----------ccHHHHHHHHHHcCCeeeehhh
Confidence 67778999999999999999999863211 1123356677888998877553
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=87.84 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCC-CCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPS-LSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~-~sFD~I~~~~ 116 (458)
....+|||||||+|+.++.|++... +|+.+|..+...+.|+++ +. ++.+..+|...- ++. ..||.|+.+.
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~~~~aPyD~I~Vta 146 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-WPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-CCCCCCcCEEEEee
Confidence 4557999999999999999998753 899999999999999886 44 677777775432 333 7899999886
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.-..+ . .+.+-|||||++++-.-
T Consensus 147 aa~~vP---~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVP---E----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCC---H----HHHHhcccCCEEEEEEc
Confidence 644433 3 34556899999999664
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-07 Score=89.81 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCC-CCCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~-Lpfp~~sFD~I 112 (458)
..+++||+||||+|.++..+++.. +..+++++|+++++++.|++.- .++.+...|... +....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999999988764 3458999999999999998751 234555555432 12224789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++... .+.... ...+++.+.+.|+|||.+++...
T Consensus 150 i~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 98643 222211 24688999999999999999743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.9e-08 Score=101.20 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|..+..+++...+..+++++|+++.+++.++++ +. ++.+..+|+..++ ++ ++||+|++..
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 446899999999999999987632356899999999999988765 43 4677778876653 34 7899999742
Q ss_pred c------ccc-----cccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 C------GVD-----WDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~------l~~-----~~~~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
- +-+ |... ...+|.++.++|||||.+++++...
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1 000 1111 1257999999999999999887533
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-07 Score=90.93 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=78.5
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
+|||+|||+|..+..++... +..+|+++|+|+.+++.|+++ ++ ++.+...|.. -+.. ++||+|+||--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 79999999999999999865 568999999999999999877 43 2233333211 1233 489999998432222
Q ss_pred c----------ccH--------------HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhc
Q 012709 122 D----------QKD--------------GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLC 175 (458)
Q Consensus 122 ~----------~~~--------------~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~ 175 (458)
. .+| .+++.++.+.|+|||.+++..-.. .-+.+.++....+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-------------q~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-------------QGEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-------------cHHHHHHHHHhcC
Confidence 1 011 257788999999999999876311 1234566666667
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=91.42 Aligned_cols=100 Identities=25% Similarity=0.292 Sum_probs=81.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCC-CeEEEeeccCCC---CCCCCCeeEEEeccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQL---PYPSLSFDMLHCARC 117 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~-~~~~~~~d~~~L---pfp~~sFD~I~~~~~ 117 (458)
..+||||||.|.+...+|+++ |...++|+|+...-+..|. +.++ ++.+...|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 489999999999999999976 6789999999988776654 4488 899998887654 245569999998876
Q ss_pred cccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
-+|+... ..+++.+.++|+|||.+.+.+-
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 6676432 2689999999999999999873
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-07 Score=96.27 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------CCCeEEEeeccCCC-CCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQL-PYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~~~~~~~~~d~~~L-pfp~~sF 109 (458)
+.+++|||+|||+|..+..+++.. ...+++.+|+++++++.|+++ ..++.+...|.... ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 345799999999999999998752 225999999999999999983 13567777776552 2334789
Q ss_pred eEEEecccccccccc-----HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 110 DMLHCARCGVDWDQK-----DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 110 D~I~~~~~l~~~~~~-----~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
|+|++... .+.... ..++++.+.+.|||||.+++....+.. . .+...++.+..++.++
T Consensus 375 DvIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~----~----~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 375 DVIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF----A----PKAFWSIEATLEAAGL 437 (521)
T ss_pred CEEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc----c----hHHHHHHHHHHHHcCC
Confidence 99998743 222111 135889999999999999987643211 1 1223345555666666
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=89.74 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-----CCCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-----fp~~sFD 110 (458)
.++++|||+|||+|..+..++..-....+++++|+++.+++.|+++ +. .+.+..+++... + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3467999999999998888876433456999999999999999876 33 467777776442 1 1246899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+|++-.. ......++.++.++|||||.+++-.
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9987521 2233468999999999999988754
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.9e-07 Score=89.89 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=74.7
Q ss_pred CCEEEEECCCCc----hhHHHHhhcC---CccceEEEEcCCHHHHHHHHHc--------CC-------------------
Q 012709 45 VRTILDIGCGYG----SFGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL------------------- 90 (458)
Q Consensus 45 ~~~VLDVGCG~G----~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~er--------~~------------------- 90 (458)
.-+|+..||++| +++..|.+.. ....+|+|+|+|+.+++.|++- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4555554421 1146899999999999998763 00
Q ss_pred ---------CeEEEeeccCCCCCC-CCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEe
Q 012709 91 ---------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 91 ---------~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+.|...+....+++ .+.||+|+|.++++++... ..+++..+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 123444555444443 5789999999999998654 3489999999999999988865
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=83.26 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeE-EEeeccCCC-----CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~-~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.++..+++++. .+++++|++++|+....+...++. +...+...+ +..-..||+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh
Confidence 3456999999999999999999864 489999999988876554444432 232233322 11113678777664
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC-C-------cccccccH-HHHHHHHHHHHHHHhhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT-N-------PQAFLRNK-ENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~-~-------~~~~~~~~-e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+ ..|..+.+.|+| |.+++-..+. . ..+-..+. .+.+..+++...+.+.+|....
T Consensus 152 ~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 152 I---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred H---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 3 147789999999 7776654322 1 01112222 2233355666666777776554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=84.42 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCC---CCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP---SLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp---~~sFD~I~ 113 (458)
.++.+|||.|.|+|+++.+|++.-.+..+|...|.+++..+.|+++ +. ++.+...|.....|+ ++.||.|+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf 118 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVF 118 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEE
Confidence 4557999999999999999998766778999999999999999887 33 578888887655453 36799987
Q ss_pred eccccccccccHHHHHHHHHhcc-cCCcEEEEEeCCC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvL-kPGG~liis~~~~ 149 (458)
. .++ +|-.++..+.++| ||||++++..|+.
T Consensus 119 L-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 119 L-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp E-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred E-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 4 334 5566899999999 9999999999854
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=78.98 Aligned_cols=106 Identities=16% Similarity=0.049 Sum_probs=90.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC-----CCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp-----fp~~sFD~I~~~~~ 117 (458)
.++.-|||+|.|||.++..+++++++..+++++|.|++.+....++...+.+..+|+..+. +.+..||.|+|.--
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 3446899999999999999999999999999999999999999988777778888876654 56678999999877
Q ss_pred cccccccHH-HHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~ 148 (458)
+..++.... ++|+++...|++||.++-....
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 777765443 7899999999999999987754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-08 Score=79.58 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=58.1
Q ss_pred eeccccchhhhhhhhcc-CCCeEEEEeecCCCCCCchhhhcccccc---ccccccccCCCCCCccccccccccccccccC
Q 012709 311 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 311 ~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~~~l~~~~~rgl~g---~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
||+|||.|-+++.|.+. ...|+.+.+.+ ..+..+-++.--. ..+.=-+.++.-+.+||++++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---
Confidence 79999999999999955 33344443332 2333333322111 2221123344445899999999998865
Q ss_pred CCCCCcchhhhhhcccccCCceEEE
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
.+...++-|+-|+|||||+++|
T Consensus 74 ---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHcCcCeEEeC
Confidence 4567899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=91.28 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC----CCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~----Lpfp~~sFD~I~~ 114 (458)
+..+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|+++ +. ++.+..+|+.. +++++++||+|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 34699999999999999999875 3899999999999998876 33 57788888653 3455678999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-- ... ....+..+.+ ++|++.++++..
T Consensus 374 dPP---r~g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 374 DPP---RAG-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CcC---CcC-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 633 221 2345555555 699999999875
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=91.12 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCC--C--CCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--Y--PSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lp--f--p~~sFD~I~ 113 (458)
.++|||+|||+|.++..++..+ ..+++++|+|+.+++.|+++ ++ ++.+..+|+...- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4699999999999998876654 34899999999999998876 43 4677777765431 1 346899999
Q ss_pred eccccccccc--------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~--------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.--.+.-.. .-..++..+.++|+|||.++....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8743221110 112455567899999999998764
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-07 Score=85.28 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---CeEEEe------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGS------------------------ 96 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---~~~~~~------------------------ 96 (458)
.+..+|||||-.|.++..+++.. ....+.|+|+.+..|+.|+++.. ..+..+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45689999999999999999863 45579999999999999998711 000000
Q ss_pred -----------------eccC-CCCCCCCCeeEEEecc----ccccccccH-HHHHHHHHhcccCCcEEEEE
Q 012709 97 -----------------FASK-QLPYPSLSFDMLHCAR----CGVDWDQKD-GILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 97 -----------------~d~~-~Lpfp~~sFD~I~~~~----~l~~~~~~~-~~~L~ei~RvLkPGG~liis 145 (458)
.+.. -+.+....||+|+|.. +-++|.++. .++|+.+.++|.|||+|++-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 1122346799999963 334455432 38999999999999999984
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=98.48 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
.++|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++ +. ++.+..+|.... .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46999999999999999998754 3799999999999999876 33 467777775432 11146899999863
Q ss_pred cccc----------ccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVD----------WDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~----------~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.+. ...+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 111223578889999999999988764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.5e-06 Score=84.49 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCc----hhHHHHhhcCC----ccceEEEEcCCHHHHHHHHHc---------CC----------------
Q 012709 44 GVRTILDIGCGYG----SFGAHLFSKEL----LTMCIANYEASGSQVQLTLER---------GL---------------- 90 (458)
Q Consensus 44 ~~~~VLDVGCG~G----~~~~~La~~~~----~~~~v~gvD~S~~~i~~A~er---------~~---------------- 90 (458)
+.-+|+-.||++| +++..|.+... ...+|+|+|++...++.|+.= ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4569999999999 55555555432 257899999999999988642 11
Q ss_pred ---------CeEEEeeccCCCCCCCCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeC
Q 012709 91 ---------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 91 ---------~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.|...+...-++..+.||+|+|-+|++.+....+ +++..++..|+|||+|++...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 122333333333323467999999999999886544 899999999999999999653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=3e-06 Score=85.95 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCC-CCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpf-p~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++ ++ ++.+..+|+..+.. ..++||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC-
Confidence 46899999999999999998653 899999999999998765 44 57888888766532 3357999998732
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...-.. .+.++..-++|++.++++..+.
T Consensus 250 --r~G~~~-~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 250 --RRGIGK-ELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred --CCCccH-HHHHHHHHcCCCeEEEEECCcc
Confidence 111112 2334444478888888777533
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-06 Score=70.63 Aligned_cols=99 Identities=27% Similarity=0.337 Sum_probs=72.7
Q ss_pred EEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--C---eEEEeeccCC--CCCCC-CCeeEEEeccccc
Q 012709 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 119 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~---~~~~~~d~~~--Lpfp~-~sFD~I~~~~~l~ 119 (458)
++|+|||+|... .+.........++++|+++.++..+..... . +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999865 333322111378889999999988655431 1 4566666655 78887 489999 666666
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 6654 6789999999999999999998754
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.36 E-value=7e-06 Score=81.32 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=95.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH---HHHHc---CC---------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER---GL--------------------------- 90 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~---~A~er---~~--------------------------- 90 (458)
...+||==|||.|.++..++.+|+ .+.|.|.|--|+- +.... ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 446899999999999999999987 8999999998863 22221 00
Q ss_pred ------------CeEEEeeccCCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc
Q 012709 91 ------------PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 155 (458)
Q Consensus 91 ------------~~~~~~~d~~~Lpfp~---~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~ 155 (458)
+.....+|...+..++ ++||+|++.+ ++.-..+.-.+|..+.++|||||+++=.+|...+....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 1112233333332233 6899999875 45555566689999999999999999888876443221
Q ss_pred --ccH-HHHHHHHHHHHHHHhhccEEEEeee
Q 012709 156 --RNK-ENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 156 --~~~-e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
.+. .....++++..+.+..+|+.+.++.
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 111 1334489999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-07 Score=86.67 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=87.8
Q ss_pred eccccccCc-cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 10 SFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 10 ~F~~~~~~f-d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
-|-|.+++| -..+++. +.+.... -.....+.++||+|+|.|..+..++... .+|.+++.|..|....+++
T Consensus 83 G~lgrGsMFifSe~QF~----klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFR----KLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccccCceEEecHHHHH----HHHhcCC--CccCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc
Confidence 466667777 3434433 3332211 1123345799999999999999988642 3789999999999999888
Q ss_pred CCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccC-CcEEEEEeCCC
Q 012709 89 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLT 149 (458)
Q Consensus 89 ~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkP-GG~liis~~~~ 149 (458)
+.++.-.. ...--+-+||+|.|..+ +.-..++.++|+.+..+|+| +|+.+++-..+
T Consensus 154 ~ynVl~~~----ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 154 NYNVLTEI----EWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred CCceeeeh----hhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 76553321 11112345999999874 66677888999999999999 89988875433
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.6e-06 Score=78.21 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=69.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++.++. .+++++|.++.+++.|+++ +. ++.+...|... ++...++||+|++.--+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 35899999999999987666553 4899999999999988775 33 56777777644 22234579999988542
Q ss_pred ccccccHHHHHHHHHh--cccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~R--vLkPGG~liis~~ 147 (458)
. ..-...++..+.. +|+|+|.+++...
T Consensus 132 ~--~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 R--KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C--CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 1122345555544 4799998888764
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=85.42 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC----CCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~----Lpfp~~sFD~I~~ 114 (458)
+..+|||+|||+|.++..+++... +++++|+++.+++.|+++ +. ++.+..+|+.. +++.+++||+|++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 346899999999999999998643 899999999999999876 33 67788888654 2344567999997
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-.. ..-...+++.+.+ ++|++.++++..
T Consensus 369 dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 369 DPPR---KGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CcCC---CCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 5331 1112456666554 889988777753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.9e-06 Score=82.35 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---C--C--CeE
Q 012709 21 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--L--PAM 93 (458)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~--~--~~~ 93 (458)
...|++.+++.+..........+...++||||||+|.....|+.+. ...+++|+|+++.+++.|+++ + . .+.
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 4677777777765421111122345789999999998888887653 356999999999999999876 2 2 233
Q ss_pred EEe-eccCCC----CCCCCCeeEEEecccccc
Q 012709 94 IGS-FASKQL----PYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 94 ~~~-~d~~~L----pfp~~sFD~I~~~~~l~~ 120 (458)
+.. .+...+ ..+.+.||+|+|+--++.
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 332 222221 124578999999966444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.1e-06 Score=96.55 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------------------CCeEEEeeccCCCC
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------------LPAMIGSFASKQLP 103 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------------------~~~~~~~~d~~~Lp 103 (458)
..+|||+|||+|..+..++.+. +..+++++|+|+.+++.|+++. .++.+..+|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3589999999999999999864 4568999999999999997661 1367777776543
Q ss_pred CCC--CCeeEEEeccccccc----------------------------c-----ccH----HHHHHHHHhcccCCcEEEE
Q 012709 104 YPS--LSFDMLHCARCGVDW----------------------------D-----QKD----GILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 104 fp~--~sFD~I~~~~~l~~~----------------------------~-----~~~----~~~L~ei~RvLkPGG~lii 144 (458)
+++ ..||+|+|+--.+.- . .+. .+++.++.++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 369999997321110 0 111 3677888899999999998
Q ss_pred EeC
Q 012709 145 TSP 147 (458)
Q Consensus 145 s~~ 147 (458)
-.-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=81.15 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-----CCCCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-----fp~~sFD~ 111 (458)
.+++||||||++|.-+.++++.-.+..+++.+|.++...+.|++. +. ++.+..+++... + .+.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 457999999999999999997543467999999999999999765 33 677887775431 1 22368999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+.-. ...+-..++..+.++|+|||.+++-..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 99643 233445789999999999999988654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=84.43 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||||||+|.++..+++++. +++++|+++.|++.++++. .++.+..+|+..+++++-.+|.|+++-
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 346899999999999999999863 8999999999999998763 478888999888877643368888873
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=77.72 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C----CCeEEEeeccCC-C--C-CCCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAMIGSFASKQ-L--P-YPSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~----~~~~~~~~d~~~-L--p-fp~~sFD 110 (458)
....+|||+|||+|..+..++... ...+|+.+|.++ .++.++.+ + .++.+...+-.. . . ...++||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 455799999999999999998872 345899999988 76665544 2 234444443222 1 1 2346899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+++.|++. ......+++-+.++|+|+|.++++.+
T Consensus 122 ~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999665 44556789999999999999888775
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.9e-06 Score=82.85 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC-C----CCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y----PSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp-f----p~~sFD 110 (458)
.++++|||||+|+|..+.+++..-.+...++.+|.++...+.|+++ |. .+.+..+++.. |+ + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3568999999999999999987422355799999999999999776 44 56777776533 22 1 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+|+.-. ....-..++..+.++|+|||.+++-.
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 999642 23334578999999999999988744
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-06 Score=81.42 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++++. +++++|+++.+++.++++. .++.+..+|+..++++ .||.|+++-.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCC
Confidence 346899999999999999998753 8999999999999998762 3578888898887765 4899999854
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=80.11 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEe-eccCCC-C-CCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGS-FASKQL-P-YPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~-~d~~~L-p-fp~~sFD~I~ 113 (458)
.++++|||||.+.|.-+..++..-....+++.+|.++++.+.|+++ |. .+.+.. +|+.+. . ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4678999999999999999987432267899999999999999987 33 344444 343221 1 4568999999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.- +...+-..+|..+.++|+|||.+++-.-
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 53 3344445799999999999999988553
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.7e-06 Score=72.74 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=62.4
Q ss_pred CCEEEEECCCCch-hHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-CCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~-~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~ 122 (458)
..+|||||||+|. ++..|++.|. +|+++|+++..++.|++++.++ ...|..+.++. -+.+|+|.+.+. +
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4689999999995 8889998776 9999999999999999887544 44444433322 256999998865 2
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+....+.++.+-+ |.-+++..
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEc
Confidence 22234455554433 34455543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=83.20 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=70.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++.++. +++++|+++.+++.|+++ +. ++.+..+|+.... -..++||+|++.--
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP- 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP- 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC-
Confidence 35899999999999999997653 899999999999988876 33 5778888875532 11246999998743
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...-...++..+. .++|++.++++..
T Consensus 310 --r~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 310 --RRGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CCCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 2222234555554 4799998888874
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-05 Score=75.51 Aligned_cols=120 Identities=20% Similarity=0.275 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEE
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 95 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~ 95 (458)
+.+.+.+.+.+..... .....+||+|||+|..+..++. +.+.+.++++|.|+.++..|.++ .+ .+.+.
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~-~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLH-GLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHh-cCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4555555555543211 1123799999999999999987 45688999999999999998877 22 22333
Q ss_pred eec-----cCCCCCCCCCeeEEEeccccccccccH-------------------------HHHHHHHHhcccCCcEEEEE
Q 012709 96 SFA-----SKQLPYPSLSFDMLHCARCGVDWDQKD-------------------------GILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 96 ~~d-----~~~Lpfp~~sFD~I~~~~~l~~~~~~~-------------------------~~~L~ei~RvLkPGG~liis 145 (458)
..+ ....+...+.+|+++|+--.+.-.+.+ -.++.-+-|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 221 122345678999999984322111000 13556778999999999998
Q ss_pred eC
Q 012709 146 SP 147 (458)
Q Consensus 146 ~~ 147 (458)
..
T Consensus 285 ~~ 286 (328)
T KOG2904|consen 285 LV 286 (328)
T ss_pred ec
Confidence 75
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.7e-06 Score=78.89 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=95.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-------CCeEEEeeccCCC--CCCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-------LPAMIGSFASKQL--PYPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-------~~~~~~~~d~~~L--pfp~~sFD~I~ 113 (458)
....+|||...|-|.++...+++|.. .|..++.+++.++.|.-+. ..+.+..+|+.++ .|+|.+||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 34579999999999999999999854 8999999999999887662 2356666776554 58899999998
Q ss_pred ecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 114 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 114 ~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
----.+..... -.++.+|++|+|||||+++=..-.+..... .......+.+.+.+.+|..+..
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr-----G~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR-----GLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc-----cCChhHHHHHHHHhcCceeeee
Confidence 64332322221 247899999999999999877654432221 1223456777888889987654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=85.24 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcC---CccceEEEEcCCHHHHHHHHH----cC--CCe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLE----RG--LPA 92 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~e----r~--~~~ 92 (458)
..|.+.+.+.+...............|||||||+|.++...++.+ ....+|+++|-++.++...++ ++ -.+
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V 243 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE
Confidence 445555555554432211111124689999999999987776653 124589999999987755433 33 478
Q ss_pred EEEeeccCCCCCCCCCeeEEEecccccccc--ccHHHHHHHHHhcccCCcEEE
Q 012709 93 MIGSFASKQLPYPSLSFDMLHCARCGVDWD--QKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 93 ~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~--~~~~~~L~ei~RvLkPGG~li 143 (458)
.+..+|++....| ..+|+|+|=. +=.+- +-..+.|....|.|||||.++
T Consensus 244 ~vi~~d~r~v~lp-ekvDIIVSEl-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 244 TVIHGDMREVELP-EKVDIIVSEL-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeCcccCCCCC-CceeEEEEec-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999999998776 4899999732 22222 122357889999999999865
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.4e-06 Score=88.86 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC--CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L--pfp~~sFD~I~~~~ 116 (458)
....+||||||.|.+...++... |...++|+|++..-+..|.++ ++ ++.+...++..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45689999999999999999975 778999999999877665444 44 455555554322 27889999999887
Q ss_pred ccccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
. -+|+... ..++..+.++|||||.+.+.+-
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 6 6675422 3689999999999999999863
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-06 Score=85.76 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
...++|+|||.|-.+.. + +.+.++|.|.+...+..|++.+.. ....+|+..+|+++.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 45899999999965421 1 456789999999999888877654 56677889999999999999999998888654
Q ss_pred --HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 125 --DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 125 --~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3489999999999999988877644
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-06 Score=83.76 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++.+.++.|. .+|.++|.|.-+ +.|. .++. -+.+..+..+.+.+|-.++|+|+|-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 457999999999999999999985 489999998754 5554 4444 355666666666566789999998543
Q ss_pred cccc--cccHHHHHHHHHhcccCCcEEEE
Q 012709 118 GVDW--DQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 118 l~~~--~~~~~~~L~ei~RvLkPGG~lii 144 (458)
-... ..-...+|-.-.+.|+|||.++=
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2221 11223566677899999998753
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-06 Score=78.86 Aligned_cols=94 Identities=23% Similarity=0.353 Sum_probs=63.1
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCcccccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
-.+|||+|||.|.|+..|. +.+. .|+-++.. ..+.. +-....-++-.++ ..-+.+||+|.+..+|...
T Consensus 23 ~~~vLDiGcG~G~~~~~l~--~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~-- 91 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALA--KRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHL-- 91 (161)
T ss_dssp TSEEEEESSTTSHHHHHHH--HTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGS--
T ss_pred CCEEEEEcCCCCHHHHHHH--HhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhc--
Confidence 4699999999999999998 4443 33333332 22222 1111111111121 1124799999999999987
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
. +...+|-+|=|+|+|||++++.+..
T Consensus 92 -~---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 92 -P---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -S---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -c---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3 5788999999999999999997654
|
... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-05 Score=76.30 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCee---EEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD---~I~~~~ 116 (458)
+..+|||+|||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..++++ +|| +|+++-
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcC
Confidence 456999999999999999999863 6999999999999998762 4678888888888775 466 777763
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-05 Score=78.80 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC-CCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L-pfp~~sFD~I~ 113 (458)
.+++||.||+|.|..++++++.. +..+++.+|+++.+++.|++.- .++.+...|+... ...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 56799999999999999988753 3458999999999999998752 3566777665442 33457899999
Q ss_pred ecccccccccc------HHHHHH-HHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~------~~~~L~-ei~RvLkPGG~liis~~ 147 (458)
+- +.-++... ...+++ .+.+.|+|||.+++...
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 75 22222111 135787 89999999999987643
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=72.55 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++|+|+|||||.++...+-.|. ..|+++|+.+++++.|+++. ..+.+...|..+.. +.||.++++--+=
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 456899999999999988887774 48999999999999998873 37888888887764 5689999875433
Q ss_pred ccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 120 DWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 120 ~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.+... +..+|..+.++- ..+.+-+... ..+-++......+.....
T Consensus 120 ~~~rhaDr~Fl~~Ale~s----~vVYsiH~a~------------~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 120 SQRRHADRPFLLKALEIS----DVVYSIHKAG------------SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred cccccCCHHHHHHHHHhh----heEEEeeccc------------cHHHHHHHHHhcCCeEEE
Confidence 33221 235666666554 3444443221 223345566666655554
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=81.30 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEee-ccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF-ASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~-d~~~Lpfp~~sFD~I~~~~ 116 (458)
..+..|||==||||++.....-.|. +++|.|++..|++-|+.+ ++ ...+... |+..+|+++.+||.|++--
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 4456999999999999988876665 899999999999999887 32 3334444 9999999999999999831
Q ss_pred c-----ccccc---ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 C-----GVDWD---QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~-----l~~~~---~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
- -..-. .--..+|..+.++|++||++++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 01111 1123789999999999999999987
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.9e-05 Score=74.87 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=100.9
Q ss_pred HHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCc-cceEEEEcCCHHHHHHHH----HcCCC--eEEEeeccCC
Q 012709 29 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQ 101 (458)
Q Consensus 29 ~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~-~~~v~gvD~S~~~i~~A~----er~~~--~~~~~~d~~~ 101 (458)
.+.+......+...+.+-+||||.||.|......+..... ..++...|.|+..++..+ ++|.. ++|..+|+.+
T Consensus 120 ~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 120 EELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCC
Confidence 3333333333334456679999999999877776654322 368999999999987654 45653 4788877544
Q ss_pred C---CCCCCCeeEEEeccccccccccH--HHHHHHHHhcccCCcEEEEEeCCCCcccc-----cccHHHHHHH-------
Q 012709 102 L---PYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAF-----LRNKENQKRW------- 164 (458)
Q Consensus 102 L---pfp~~sFD~I~~~~~l~~~~~~~--~~~L~ei~RvLkPGG~liis~~~~~~~~~-----~~~~e~~~~w------- 164 (458)
. .--+-..++++.+..+..+.++. ...|..+.+.+.|||+++.+..+..++-. ++....-+.|
T Consensus 200 ~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq 279 (311)
T PF12147_consen 200 RDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQ 279 (311)
T ss_pred HhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCH
Confidence 2 11134579999988766666543 26799999999999999999865433211 0000011123
Q ss_pred HHHHHHHHhhccEEEEee
Q 012709 165 NFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 165 ~~i~~l~~~~~w~~v~~~ 182 (458)
.+|.++.+..+|+++.+.
T Consensus 280 ~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 280 AEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHHHHHcCCchhhhe
Confidence 788999999998877654
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=73.00 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=84.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|+|+|||+|.++.++..+... ..|+-+|.. .-+.. +-+.|+ +-+++.-.+.+.. ..+||+|-+..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~---~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPE---LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCC---CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 57999999999988877522222 244555543 22221 223344 4445444455554 66899998643
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEE-eec--c-CCCccEEEEEec
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI-EIE--S-NSDERLLICQKP 451 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~-~~~--~-~~~~~~~~~~k~ 451 (458)
-..+..++-++-|+|||||.+++-+......++.++++.+-|.+..+ ..+ . .++..+.|.+|+
T Consensus 121 --------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 121 --------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred --------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 13456788899999999999999988888999999999999994433 222 1 122455666653
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.6e-05 Score=71.16 Aligned_cols=104 Identities=23% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCc--------cceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELL--------TMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLS 108 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~--------~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~s 108 (458)
.....|||--||+|.+....+..+.. ...+.|.|+++.+++.|+++ +. .+.+...|+..+++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 34568999999999998776543321 12388999999999999887 33 467888999999988899
Q ss_pred eeEEEecccccccccc---H----HHHHHHHHhcccCCcEEEEEe
Q 012709 109 FDMLHCARCGVDWDQK---D----GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 109 FD~I~~~~~l~~~~~~---~----~~~L~ei~RvLkPGG~liis~ 146 (458)
+|.|+++--.-.-... . ..+++++.++|++...+++..
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 9999997321111111 1 257889999999944444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.9e-05 Score=73.57 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEE---e-eccCCCCCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIG---S-FASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~---~-~d~~~Lpfp~~sFD~I~~~ 115 (458)
..+++|||+|||+|.-.-.+.+.-....+++++|.|+.|++.++.- ....... . .-....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 4567999999999976554443211234789999999999987654 1111110 0 001112332 34999999
Q ss_pred cccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 116 RCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 116 ~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+++....... ..+++.+.+.+.+ +++++++.. +.......++++.+...++.+++
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt--------~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT--------PAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC--------hHHHHHHHHHHHHHhhCCCceEC
Confidence 9998887622 2566666666665 999999854 44555556666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=77.56 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC-C-C-----CCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-P-Y-----PSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L-p-f-----p~~sF 109 (458)
.++++|||||+++|.-+..++..-.+..+++.+|.++...+.|++. | ..+.+..+++... + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 3567999999999999999987533467899999999999988776 3 2567777765332 2 1 13689
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 110 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
|+|+.-. ....-..++..+.+.|+|||.+++-
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9999642 2333446888889999999997764
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00021 Score=67.29 Aligned_cols=99 Identities=15% Similarity=0.000 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC-C-CC-CCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PS-LSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp-f-p~-~sFD~I~~ 114 (458)
..+|||++||+|.++..+++++.. +++++|.++.+++.++++ +. ++.+...|+.. +. + .. ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 358999999999999999999753 799999999999888776 33 46677777633 22 1 12 24788876
Q ss_pred ccccccccccHHHHHHHH--HhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei--~RvLkPGG~liis~~ 147 (458)
--- +.. .....++..+ ..+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 432 111 1223444444 347888998777653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.7e-05 Score=77.42 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++.+. +++++|+++.|++.++++ + .++.+..+|+...+++ .||+|+++-.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP 110 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP 110 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence 446899999999999999998753 799999999999998875 2 3578888888766654 6899998743
Q ss_pred ccccc
Q 012709 118 GVDWD 122 (458)
Q Consensus 118 l~~~~ 122 (458)
+++.
T Consensus 111 -Y~Is 114 (294)
T PTZ00338 111 -YQIS 114 (294)
T ss_pred -cccC
Confidence 4444
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=81.08 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCCCCchh----hhcccccc----ccccccccCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPM----ILDRGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~~~l~~----~~~rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-..|||+|||.|+++..|.+. +..|..+.+.| ..+.. +-++|+.. .-.|..+ ++.-+.+||+|.+.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALN-QPFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCccc-CCCCCCCccEEEEC
Confidence 357999999999999998832 12333333222 22322 22334421 1123322 22224799999987
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..+..+ . +...+|-||-|+|||||.+++-
T Consensus 194 ~~~~h~---~---d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 194 ESGEHM---P---DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred Cchhcc---C---CHHHHHHHHHHHcCCCcEEEEE
Confidence 766555 2 2457899999999999999984
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=65.77 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=74.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHH----HHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~----A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+.-+||||||+|..+.+|++...+.....++|+++.+.+. |+.++..+..+..|...- +..++.|+++-+.-...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 5679999999999999999876677788999999998765 555566666666654332 23388898887643222
Q ss_pred --------------cc--cc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 --------------WD--QK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 --------------~~--~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|. .+ ..+++..+..+|.|.|.|++...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 21 11 12567778888999999999875
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.1e-05 Score=70.92 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHc---------------CCCeEEEeeccCCCCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER---------------GLPAMIGSFASKQLPYPSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er---------------~~~~~~~~~d~~~Lpfp~~ 107 (458)
++.+.||+|.|+|.++..++.. +.+....+|+|..++.++.+.++ ..+..+.++|....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 3458999999999988877643 22333458999999999998776 1245567777776655668
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 108 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.||.|||... .....+++...|+|||.+++-.
T Consensus 162 ~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 8999999743 1235567778889999998854
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=77.58 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEE---
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLH--- 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~--- 113 (458)
..+.+|||++||+|.-+.+++..-.....+++.|+++.-++..+++ |+ ++.+...|...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4557999999999999999887643345899999999988777655 54 4566667766552 2236799999
Q ss_pred -eccccccccccH------------------HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 -CARCGVDWDQKD------------------GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 -~~~~l~~~~~~~------------------~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.. -.+..++ .++|..+.+.|||||+++.++-..
T Consensus 192 PCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 6632 1111121 367889999999999999988744
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0003 Score=69.60 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCCCCCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
+.+++||=||-|.|...+.+++.. . +|+-+|+.+.+++.|++. .+++.+... .. .-..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--T-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 567899999999999999999863 2 999999999999999984 234554431 11 11236899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+-.. .+..+.+.+.|.|+|||.++.....
T Consensus 145 vDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 145 CLQE------PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred EcCC------CChHHHHHHHHhcCCCcEEEECCCC
Confidence 7532 2356889999999999999997653
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00056 Score=64.31 Aligned_cols=93 Identities=27% Similarity=0.315 Sum_probs=69.8
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCCC-eEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~~-~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
+++|||+|.|.-+..|+=.. |..+++.+|....-+.+.+ +-++. +.+....++. +....+||+|++..+ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV-A-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS-S--
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh-c--
Confidence 89999999998888887643 6779999999987554432 33654 8888887777 455688999998754 2
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEe
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
....++.-+...|++||.+++.-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEc
Confidence 34568888999999999998875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.3e-05 Score=80.30 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=72.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc-c-cccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF-V-GVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl-~-g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|..++. .|+-+|.. .-+.. +-+.|+ + -...|.-+ .. .+..||+|-+..+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl 194 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVL 194 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchh
Confidence 3799999999999999984332 34444443 32332 234455 1 11122211 11 26789999998888
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe---ccH-----------HHHHHHHHHHhhccceEEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTA-----------RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~---d~~-----------~~~~~~~~~~~~~~w~~~~~~ 436 (458)
... ++-.+..++-+|-|.|+|||++++- +.. -.-++++++.+. |++..+.
T Consensus 195 ~~l----~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 195 MFL----NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hhC----CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 654 2346778999999999999996541 111 113566666665 8877663
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-05 Score=80.55 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=82.8
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++|+|||.|....++... ....++|+|.++.++..+... ++ ...+...+....||+++.||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 37999999999999999864 345889999999888766544 11 23346677888899999999999999888
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|.+ +...+++|++|+++|||+++..+...
T Consensus 190 ~~~-~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 190 HAP-DLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred cCC-cHHHHHHHHhcccCCCceEEeHHHHH
Confidence 877 67889999999999999999987543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=69.93 Aligned_cols=103 Identities=17% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC-CCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L-pfp~~sFD~I 112 (458)
+.+++||-||-|.|..++.+++.. +..+++.+|+.++.++.|++.- .++.+...|.... .-..++||+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 344799999999999999999875 4568999999999999999872 3445555554432 2122489999
Q ss_pred Eeccccccccc----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++-.. -+... ....+++.+.|.|+++|.++...-
T Consensus 154 i~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 154 IVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 97522 22111 014799999999999999999843
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.3e-05 Score=75.72 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=60.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-+|||+|||.|.++..|.++...|..+ |.+ ..+.. +-++|+ -....|..+ + .++.+||+|-+..+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gv-----D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAW-----DKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVV 104 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEE-----eCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecc
Confidence 469999999999999998543334433 332 22221 223444 223344433 2 23678999998877
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
|-.+ ..-....++-+|-|.|+|||++++
T Consensus 105 ~~~~----~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 105 LMFL----EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhhC----CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 7433 234566789999999999999654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.5e-05 Score=75.79 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.....+|+|.|.|..+..+.. .++ ++.+++.....+-.+.... ..+....+|.-.- .|. -|+|++-+|++||+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~-~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS-KYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH-hCC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 357899999999999999999 555 6889999988776665554 4556665554443 443 36999999999999
Q ss_pred cc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++ --++|+++..-|+|||.+++.+...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 64 3489999999999999999999744
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=75.98 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=61.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccccc---cc-ccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl~g---~~-~~~~~~~~~yp~t~dl~h~~~ 378 (458)
+.|||+|||.|+++..+.++-..+ +|+-++-+ +++..+- +.|+-+ ++ .|..+ . .+|.+||+|++.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887432222 22222322 4443332 345522 22 22212 1 2467899999988
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
+|... . +...++-++.|+|+|||++++.+-
T Consensus 76 ~l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHI---K---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhC---C---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 88766 2 256789999999999999998653
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00027 Score=67.51 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC---CCCeeEEEeccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP---SLSFDMLHCARCGVDW 121 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp---~~sFD~I~~~~~l~~~ 121 (458)
.-++|||||=...+...- .+ -..|+.||+++. .-.+..-|....|.| +++||+|+|+.++-.+
T Consensus 52 ~lrlLEVGals~~N~~s~--~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--SG--WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred cceEEeecccCCCCcccc--cC--ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 369999999765443322 12 237999999873 122344455555553 6789999999875555
Q ss_pred ccc--HHHHHHHHHhcccCCcE-----EEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 122 DQK--DGILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 122 ~~~--~~~~L~ei~RvLkPGG~-----liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
++. .++.++.+.+.|+|+|. |+++.|.+-..... .-..+.+..+.+.++|..+..+.
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR-----y~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR-----YMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc-----ccCHHHHHHHHHhCCcEEEEEEe
Confidence 532 23899999999999999 88888755111000 01134567888999999988653
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.4e-05 Score=75.06 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..+.|||||||+|.++.+.++.|.. +|.+++.|+ |.+.|++. . -++.++.+..++..+| ++.|+|++--.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccc
Confidence 4578999999999999999998864 899999865 77888765 2 2456666777777777 67999997533
Q ss_pred ccccc-ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWD-QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~-~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
-.-.. +..-+....++|.|+|.|..+=+.
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 22222 111233445679999999987544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00044 Score=67.89 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
..+++||=||-|.|.....+++.. +..+++.+|+++..++.|++. ..++.+...|+... ....++||+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 357899999999999999998753 346899999999999999874 24677887775432 122228999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+.-.. -..... ...+++.+.+.|+|||.+++...
T Consensus 154 Ii~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 154 IIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 997422 222111 14799999999999999999764
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.7e-05 Score=72.57 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhh----cccc--ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~----~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|.+.- ...=|.. .+-. +.+..+- +.++ +-+++.=.+.++.-+.+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~g---vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIG---LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEE---EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 479999999999999887421 1122222 2221 2222221 1232 22222112222221368999998766
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+... . +...+|-|+-|+|+|||++++.+
T Consensus 124 l~~~---~---~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 124 LRNV---P---DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccC---C---CHHHHHHHHHHHcCcCeEEEEEE
Confidence 6544 1 23567889999999999999865
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.4e-05 Score=77.36 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=63.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc-------c--ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg-------l--~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-.|||+|||.|.++..|.++-.+-. +|+-+|-+ +-|..+-+|. . |-....=.+.+|.=..+||+|.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988873211111 34444443 5555554431 1 222222234454323699999987
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
..+..+ . +...+|-||-|+|||||.+++-|
T Consensus 153 ~~l~~~---~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNV---V---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccC---C---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 776655 2 45778999999999999998854
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.2e-05 Score=72.99 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=59.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccc--cccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~--g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|.+++. .|+-+|-+ ..+..+ -+.|+- ....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 4799999999999999984433 34444443 333322 233431 1122221 222 35689999988887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
... +.-....++=++.|.|+|||++++
T Consensus 105 ~~~----~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 105 MFL----QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccC----CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 644 233566889999999999999554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.8e-05 Score=72.75 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--------------------CC-----------C-
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------------------GL-----------P- 91 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--------------------~~-----------~- 91 (458)
.+.++||||||+-..-..-+...+ .+|+..|.++..++..++= |. +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 356899999999655433333333 3799999998876533210 11 0
Q ss_pred --eEEEeeccCCC-CCCC-----CCeeEEEeccccccccccHH---HHHHHHHhcccCCcEEEEEeCCCCc---cccccc
Q 012709 92 --AMIGSFASKQL-PYPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTNP---QAFLRN 157 (458)
Q Consensus 92 --~~~~~~d~~~L-pfp~-----~sFD~I~~~~~l~~~~~~~~---~~L~ei~RvLkPGG~liis~~~~~~---~~~~~~ 157 (458)
..+...|.... |+.. ..||+|++++|+.....+.. ++++++.++|||||.|++..-.... -+..+-
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 12444555443 3332 35999999999888877765 7899999999999999998754421 111111
Q ss_pred HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 158 KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 158 ~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.-..-.-+.+++.++..++.+...+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1111123567777788888777644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.6e-05 Score=69.60 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=78.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-cc-ccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g-~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
++|||+|||.|.++.++.++.. .|+-++-. ..+..+-+ .|+ +- +..|+.+. .+.+||+|-++--|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCC
Confidence 4599999999999999984332 23333322 22222111 122 11 12344342 24689999877655
Q ss_pred cccccC---------------CCCCCcchhhhhhcccccCCceEEEeccHHH-HHHHHHHHhhccceEEEEeeccCCCcc
Q 012709 381 SLESGH---------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARVIEIESNSDER 444 (458)
Q Consensus 381 ~~~~~~---------------~~~c~~~~~~~e~drilrp~g~~~~~d~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~ 444 (458)
-..... ..++.+..++-++.|+|+|||.+++-+.... ..++.+.++..-++........-..|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 172 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEE 172 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceE
Confidence 322100 0122256789999999999999998655444 567777777788888877644333344
Q ss_pred EEE
Q 012709 445 LLI 447 (458)
Q Consensus 445 ~~~ 447 (458)
+.+
T Consensus 173 ~~~ 175 (179)
T TIGR00537 173 LFA 175 (179)
T ss_pred EEE
Confidence 433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.4e-05 Score=73.36 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=60.2
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-cccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..+|||+|||.|.++..|.+....|.. .|-. .-+..+-+++- +.. ..|. +.++..+.+||+|-++..+...
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~-----~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTA-----LDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEE-----EECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhc
Confidence 467999999999999988743333333 3332 34444444431 111 1222 3344445689999876555322
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-+...+|-|+-|+|+|||.+++.
T Consensus 117 ------~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 117 ------GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred ------CCHHHHHHHHHHHcCCCeEEEEE
Confidence 24568899999999999999986
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.4e-05 Score=77.93 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=62.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhccccccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-.|||+|||.||++-.+.++ ..+=|--|.. +.+++.. |-++||-+...=-|.-+...+-+||-|=+-++|.+.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~-~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehv 140 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAER-YGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHV 140 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHH-H--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGT
T ss_pred CEEEEeCCCccHHHHHHHHH-cCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhc
Confidence 58999999999999999843 1443333322 2255554 457887544332233334444589999888888876
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+=+...++-.++|+|+|||.+++.
T Consensus 141 ----g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 141 ----GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2345677899999999999999974
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00036 Score=66.42 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|+|+.||.|.|+..+++.+ ....|+++|+++.+++..+++ ++ .+....+|...+.- .+.||-|++..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l- 177 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL- 177 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE---
T ss_pred cceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-
Confidence 35699999999999999999832 245899999999998877665 33 46677888877754 68899999863
Q ss_pred cccccccHHHHHHHHHhcccCCcEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~li 143 (458)
.+ ....+|..+.+++++||.+-
T Consensus 178 -p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 -PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred -hH---HHHHHHHHHHHHhcCCcEEE
Confidence 22 22348889999999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00023 Score=74.30 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=73.4
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
.+|||++||+|.++..++... ...+|+++|+++.+++.++++ ++ ...+...|+..+-...+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 589999999999999997653 234799999999999998775 33 34467777655321146799999752
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ..+..++..+.+.+++||.++++....
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAtD~ 161 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTATDT 161 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence 1 344568888788899999999996544
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00062 Score=65.87 Aligned_cols=134 Identities=15% Similarity=0.212 Sum_probs=94.2
Q ss_pred ccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEe-eccCCCC---CCCCCeeEEEecc
Q 012709 41 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGS-FASKQLP---YPSLSFDMLHCAR 116 (458)
Q Consensus 41 ~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~-~d~~~Lp---fp~~sFD~I~~~~ 116 (458)
.....+++||+|+.||.|+..++++|.. .|+++|..-.|+..-.+...++.... .++..+. +. +..|+|+|--
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 3456689999999999999999999865 89999999999888777766655432 2333331 22 3678999875
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCC--------cccccccHHH-HHHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN--------PQAFLRNKEN-QKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~--------~~~~~~~~e~-~~~w~~i~~l~~~~~w~~v~~ 181 (458)
.++.. ..+|-.+..+|+|+|.++.-.-+.- ..+-.++++. ...-.++.+.+...+|...--
T Consensus 153 SFISL----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 153 SFISL----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ehhhH----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 54443 4588899999999998887664331 1122333333 333677888888888877653
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00053 Score=72.39 Aligned_cols=100 Identities=26% Similarity=0.383 Sum_probs=83.0
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC----CeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
++|-+|||.-.+...+.+-|+. .|+.+|+|+-.++....++. ...+...|...+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999998876 89999999999988877753 45677888999999999999999877666654
Q ss_pred ccHH---------HHHHHHHhcccCCcEEEEEeCC
Q 012709 123 QKDG---------ILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 123 ~~~~---------~~L~ei~RvLkPGG~liis~~~ 148 (458)
.+.. ..+.++.|+|+|||+++.....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 3322 3578999999999998887763
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00028 Score=73.58 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=77.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC-C---CCCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L-p---fp~~sFD~I~ 113 (458)
+++|||+=|=||.++.+.+..|.. +++.+|.|...++.|+++ ++ +..+.++|+-.. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 679999999999999999987753 899999999999999987 33 456777775432 1 2234899999
Q ss_pred ecccc--------ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARCG--------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l--------~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.---- .....+-..++..+.++|+|||.++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 73211 1112223368889999999999999998644
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00045 Score=71.60 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=64.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C-CC-------------
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 105 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p-fp------------- 105 (458)
.+|||++||+|.++..|++.. . +|+++|.++.+++.|+++ ++ ++.+..+|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-R--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-C--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 479999999999999888753 2 899999999999998876 44 577887776542 1 10
Q ss_pred -CCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 -~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...||+|+.---. ..-...+++.+.+ |++.++++..
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeC
Confidence 1258999875321 2122345555544 7888888764
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0005 Score=71.04 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=64.1
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C-------C---C----
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-------Y---P---- 105 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p-------f---p---- 105 (458)
.+|||+|||+|.++..|++.. . +|+++|+++.+++.|+++ ++ ++.+..+|+..+ + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-R--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888754 2 899999999999999876 33 577777776542 1 1 0
Q ss_pred -CCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 -~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...||+|+.---. ..-...+++.+. +|++.++++..
T Consensus 276 ~~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcC
Confidence 1237988865321 111234555554 47888888875
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=2.9e-05 Score=76.18 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=61.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc---ccc-cccccCC-CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFP-TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~~~-~~~~~~~-~yp~t~dl~h~~ 377 (458)
..|||+|||.|.++..|.++.. +|+-++.. ..+..+-+ .|+.. +++ |..+ ++ ..+.+||+|.+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFH 119 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEeh
Confidence 5899999999999999985433 34444443 44444332 34422 111 2211 22 235799999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.++... . +...++-|+-|+|+|||++++-
T Consensus 120 ~vl~~~---~---~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWV---A---DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhh---C---CHHHHHHHHHHHcCCCeEEEEE
Confidence 888766 2 2357899999999999999863
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=61.93 Aligned_cols=157 Identities=14% Similarity=0.092 Sum_probs=93.7
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH----HHHHHHHHcCCCe
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGLPA 92 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~----~~i~~A~er~~~~ 92 (458)
.|...+.+...++..+....+.+.. .++.+||-+|+.+|....+++.--.+...|.+++.|+ +.+..|++| .++
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~i-k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NI 124 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPI-KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNI 124 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTE
T ss_pred ceeecCchhhHHHHHHHcCccccCC-CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-Cce
Confidence 4545567777778777554443333 3346999999999999999987654567899999999 456677776 455
Q ss_pred EEEeeccCCCC-C--CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHH
Q 012709 93 MIGSFASKQLP-Y--PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169 (458)
Q Consensus 93 ~~~~~d~~~Lp-f--p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~ 169 (458)
.-...|+.... | --+.+|+|++- + .-++..+.++.++...||+||.++++-...... ........+.+-.+
T Consensus 125 iPIl~DAr~P~~Y~~lv~~VDvI~~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD---~t~~p~~vf~~e~~ 198 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLVEMVDVIFQD-V--AQPDQARIAALNARHFLKPGGHLIISIKARSID---STADPEEVFAEEVK 198 (229)
T ss_dssp EEEES-TTSGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH----SSSSHHHHHHHHHH
T ss_pred eeeeccCCChHHhhcccccccEEEec-C--CChHHHHHHHHHHHhhccCCcEEEEEEecCccc---CcCCHHHHHHHHHH
Confidence 55555554321 1 12479999976 2 223333467888999999999999986422111 11112233444444
Q ss_pred HHHhhccEEEEe
Q 012709 170 FVENLCWELVSQ 181 (458)
Q Consensus 170 l~~~~~w~~v~~ 181 (458)
.++..+++.+.+
T Consensus 199 ~L~~~~~~~~e~ 210 (229)
T PF01269_consen 199 KLKEEGFKPLEQ 210 (229)
T ss_dssp HHHCTTCEEEEE
T ss_pred HHHHcCCChheE
Confidence 455566766654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0005 Score=64.53 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC---CCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP---YPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp---fp~~sFD~I~~ 114 (458)
..+|||+-||+|.++...+++|.. +++.+|.+...++..+++ +. .+.+...|... ++ .....||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 459999999999999999999965 899999999999888777 32 35666665322 21 24678999997
Q ss_pred cccccccccc--HHHHHHHHH--hcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQK--DGILLLEVD--RVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~--~~~~L~ei~--RvLkPGG~liis~~ 147 (458)
--- +... ...++..+. .+|+++|.+++-..
T Consensus 121 DPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 632 3322 255677766 89999999998764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=6.1e-05 Score=76.80 Aligned_cols=97 Identities=24% Similarity=0.316 Sum_probs=58.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc-ccc---ccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD-RGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~-rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
+.|+|+|||.|.|+..|.+.... .|.-|=|.... .+...+-. .+. |-+.+.=-+.++. +.+||+|++.+++.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 78999999999999999844322 23322221110 00001100 010 1111111133454 789999999888754
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. -+...+|-++-|.|+|||.+|+.
T Consensus 202 ~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 34567899999999999999974
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=2.6e-05 Score=65.91 Aligned_cols=99 Identities=24% Similarity=0.301 Sum_probs=57.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc----ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g----~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|||+|||.|.++.+|..+....= |+-++-. ..+..+-+ .++-. +..|+... ...+..||+|.+++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC
Confidence 4689999999999999984102222 2222332 33333222 23322 22333122 44455699999998
Q ss_pred -cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 -LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 -~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+..+ -+......+|=++-+.|||||++++.+
T Consensus 79 ~~~~~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22222 111233456778999999999999975
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=72.65 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=54.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-cccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.+++.|.+.-.+.=..+|+-+|-+ +.+..+-+|.- +.. ..|-. .+|.=+.+||+|.+. |+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~lp~~~~sfD~I~~~--~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RLPFADQSLDAIIRI--YA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cCCCcCCceeEEEEe--cC---
Confidence 57999999999999998732111101234444543 55555554431 111 11212 223223689999742 22
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
...+-|+.|+|+|||++++..
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEe
Confidence 123579999999999999853
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.2e-05 Score=69.62 Aligned_cols=115 Identities=12% Similarity=0.234 Sum_probs=69.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
++|+|+|||.|.++..|...... ..|+-+|.. ..+.. +-+.|+ |-+++.=.+.++ ...+||+|-+.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~---~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC---CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 58999999999877766422222 123333433 22222 122343 222221112222 357899998654 2
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhcc-ceEEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK-WDARVIE 436 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~-w~~~~~~ 436 (458)
..+.+++-++.|+|+|||.+++........++..+.+.+| |.....+
T Consensus 119 ---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 119 ---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred ---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 2345677788999999999999888877888888876654 5555444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=4.8e-05 Score=75.27 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=58.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccc-ccccc-ccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWC-EAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~-~~~~~-~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||+|+++..|... ... .|+-++-+ +.+..+-+|- -+-. ..|.. .+|+ +.+||+|++...+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 57999999999998888621 121 23333322 3333333321 1111 12221 1233 3699999987665
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
-++ ...+...++=|+-|+|+|||++++.|-
T Consensus 128 ~h~----~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 128 LHL----SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HhC----CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 443 122456789999999999999999753
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=62.26 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+++++|+|||.|-++....-. ....+.|+|+.+++++.+.++ .+++.+.+.+...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4578999999999888544432 345899999999999999877 34667888888888777899999998754
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.8e-05 Score=68.48 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=58.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---------C-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------Q-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---------~-Lpfp~~sFD~I~ 113 (458)
...+|||+||++|.|+.++++++.+...++|+|+.+.. ....+....+|.. . ++-..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45799999999999999999987556799999998751 0012222222211 1 111126899999
Q ss_pred ecccccccccc----HH-------HHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK----DG-------ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~----~~-------~~L~ei~RvLkPGG~liis~~ 147 (458)
|-.+ .+...+ .. ..+.-+...|+|||.+++-..
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 8642 222211 11 344455677999999998775
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=68.70 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=73.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc--cc-ccccccccCCC-C-CCccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 376 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl--~g-~~~~~~~~~~~-y-p~t~dl~h~ 376 (458)
-.+|||+|||.|.++..|.+..... +|+-+|-. +.+..+- ..|+ +- +..|..+.++. + +.+||++-.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~---~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDI---NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCc---cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3789999999999999887322111 23333322 2222221 1132 11 22233233331 2 568999875
Q ss_pred cccccccc--cCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEE
Q 012709 377 EGLLSLES--GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 377 ~~~~~~~~--~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
.......+ ....+.....+|-++.|+|+|||.+++. +.......+.+.+..--|.+.+.
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 43221110 0012234568899999999999999985 67777777777777777777643
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0001 Score=72.23 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=62.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
..|||+|||.|.++.+|.++-... .|+=+|-. ..+..+-++++-=+..|- +.++ ...+||+|+++.+|-..
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~--- 102 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWV--- 102 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhC---
Confidence 679999999999999998431111 23334433 556666666642112222 2232 23689999998888755
Q ss_pred CCCCCcchhhhhhcccccCCceEEEe
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. +...++-|+-|+|+|||++++.
T Consensus 103 ~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 P---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred C---CHHHHHHHHHHhCCCCcEEEEE
Confidence 2 3467889999999999999985
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=7.7e-05 Score=67.97 Aligned_cols=136 Identities=15% Similarity=0.289 Sum_probs=90.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-CCC-------eEEEeec--cCCCCCCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP-------AMIGSFA--SKQLPYPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-~~~-------~~~~~~d--~~~Lpfp~~sFD~I~~ 114 (458)
+++||++|.|.-.++..+.....+..+|..+|-++..++-.++- ..+ +-..... ..........||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 36899999996666665555556778899999999888765543 111 1011111 1112234468999999
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee-ceEEEeecC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD-ETVVWKKTS 192 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~-~~~iw~K~~ 192 (458)
+.|++ +.+....+++.+.+.|+|.|.-++..|-. -+..+.+.......+|......+ +..+||+-.
T Consensus 110 ADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRR-----------g~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRR-----------GQSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccchh-HHHHHHHHHHHHHHHhCcccceeEecCcc-----------cchHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99944 45455678999999999999988887622 11234555666777787776544 567888754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00035 Score=65.28 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=68.7
Q ss_pred eEEeeccccchhhhhhhhccCCC---eEEEEeecCCCCCCchhhhccccccccccccccC------CCC-CCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF------PTY-PRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~---~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~------~~y-p~t~dl~h~~ 377 (458)
.+|||+|||.|+++.++..+-.+ |+..=+.|.. . + .|+--+..|..+.. ..+ +.+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 58999999999998877633222 4443332211 0 0 12221223443321 011 3578887765
Q ss_pred cccc---cccc--CCCCCCcchhhhhhcccccCCceEEEe----cc-HHHHHHHHHHHhhccceEEEEeecc---CCCcc
Q 012709 378 GLLS---LESG--HRHRCSTLDIFTEIDRILRPEGWVIIR----DT-ARLIESARALTTRLKWDARVIEIES---NSDER 444 (458)
Q Consensus 378 ~~~~---~~~~--~~~~c~~~~~~~e~drilrp~g~~~~~----d~-~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~ 444 (458)
+... .+.. ....+.+..+|-++-|+|||||.+++- ++ .++++.++. . =|+..+...-. .+.|+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~-~~~~~~~~~~~~~~~~~~~ 181 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---L-FEKVKVTKPQASRKRSAEV 181 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---h-hceEEEeCCCCCCcccceE
Confidence 4311 0100 001123467899999999999999983 11 233433333 2 25566654322 33489
Q ss_pred EEEEE
Q 012709 445 LLICQ 449 (458)
Q Consensus 445 ~~~~~ 449 (458)
.+||.
T Consensus 182 ~~~~~ 186 (188)
T TIGR00438 182 YIVAK 186 (188)
T ss_pred EEEEe
Confidence 99885
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00099 Score=65.70 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCC-CeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSL-SFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~-sFD~I~~~~~l~~ 120 (458)
..+|||||+|.|.++..|++++. .|+++|+++.+++..+++. .+..+..+|+...++++- .++.|+++-- ++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 57999999999999999999875 7999999999999988873 478899999988888754 6899998743 44
Q ss_pred cc
Q 012709 121 WD 122 (458)
Q Consensus 121 ~~ 122 (458)
+.
T Consensus 107 Is 108 (259)
T COG0030 107 IS 108 (259)
T ss_pred cc
Confidence 44
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00016 Score=68.77 Aligned_cols=96 Identities=25% Similarity=0.316 Sum_probs=59.8
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhcc--cccccc----ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~----~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..+.+.- ... +|+-++.. +.+..+-++ +.-... .|..+ ++.-+.+||+||+..+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~---~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEG---RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG-LPFPDGSFDAVRSDRV 96 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCc---EEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc-CCCCCCCceEEEEech
Confidence 579999999999998887321 111 23333332 444444444 111111 12211 2222368999999988
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
|... . +...++-++-|+|+|||++++-+
T Consensus 97 ~~~~---~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHL---E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhcc---C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 8766 2 35678999999999999998753
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=66.43 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhc------CCccceEEEEcCCHHHHHHHHHc----CC-
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GL- 90 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~------~~~~~~v~gvD~S~~~i~~A~er----~~- 90 (458)
....+.+.+++. .....+|||-.||+|.|...+.+. .....++.|+|+++.++..|+-+ +.
T Consensus 32 ~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 444455555552 234458999999999998887762 12345899999999999888654 22
Q ss_pred --CeEEEeeccCCCCCC--CCCeeEEEeccccccc--c------------------ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 91 --PAMIGSFASKQLPYP--SLSFDMLHCARCGVDW--D------------------QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 91 --~~~~~~~d~~~Lpfp--~~sFD~I~~~~~l~~~--~------------------~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
...+...|.-..+.. .+.||+|+++--+-.. . .....++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 223555665443322 4789999997332221 0 011257888999999999999988
Q ss_pred C
Q 012709 147 P 147 (458)
Q Consensus 147 ~ 147 (458)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 6
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00017 Score=68.86 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=58.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc---cccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg---l~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||.|.|...|.+....+ .++-++.. ..+...-++. +.-+..|. +.++..+.+||+|.++.++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 579999999999999998432211 11222221 2222222221 11111222 2334445789999988887644
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+...++-++.|+|+|||++++.
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEE
Confidence 24567899999999999999985
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00011 Score=74.84 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=65.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|.|+..|...+. +|+-+|.. ..+.++-++ ++ |-.++.=.+.++..+.+||+|=+.++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4799999999999998884333 44445554 445554433 22 22222223445544579999999988
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+.+. . +...+|-|+-|+|||||.+++.+
T Consensus 208 LeHv---~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHV---A---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8776 2 45678999999999999999864
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0031 Score=60.74 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-C-----CCCCCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-L-----PYPSLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-L-----pfp~~sFD~ 111 (458)
+++++||||.=||.-+...+..-....+++++|++++..+.+.+. +. .+.+..+.+.+ + ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 457999999999987777776555567999999999998877554 32 45555554322 1 245689999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++. -+|..+-...+.++.++||+||.+++--
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 983 5666665688999999999999998853
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00011 Score=76.67 Aligned_cols=95 Identities=20% Similarity=0.343 Sum_probs=61.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccccccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
..|||+|||.|+++..+.+. ..+ .|+-++-. ..+..+-+| |+ .+ .--+..+...+.+||.|.+.++|...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehv- 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHV- 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhC-
Confidence 57999999999999888732 232 33333433 555555443 32 11 11112222235789999998888754
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..-....++-++.|+|+|||++++.
T Consensus 242 ---g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 242 ---GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ---ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1234567899999999999999985
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=60.50 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=81.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCCC-eEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~~-~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+++|||+|.|.-+.-|+= -.+..+++.+|....-+.+.+ +-+.+ +.+....++.+.-...-||+|.|..+ -
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-a 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-A 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc-c
Confidence 57999999999999988873 236668999999876555443 33665 88888888877532111999998753 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
+...++.-+..++|+||.++..-. ......+.+.+......++.....
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~----------~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKG----------LAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhH----------HhhhhhHHHHHHHHHhhcCcEEEE
Confidence 334467778889999998765432 112233455566666666655553
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=65.45 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcC---CccceEEEEcCCHHHHHHHHHcC-----CCeEE--EeeccCC----CCC--CCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERG-----LPAMI--GSFASKQ----LPY--PSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~er~-----~~~~~--~~~d~~~----Lpf--p~~ 107 (458)
...+++|+|||.|.-+..|++.- .....++++|+|.++++.+.++- ..+.+ ..+|..+ ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 33489999999998777665431 12457999999999999887652 12333 4444322 221 123
Q ss_pred CeeEEEecc-ccccccccH-HHHHHHHHh-cccCCcEEEEEeC
Q 012709 108 SFDMLHCAR-CGVDWDQKD-GILLLEVDR-VLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~-~l~~~~~~~-~~~L~ei~R-vLkPGG~liis~~ 147 (458)
...+++... .+-++.... ..+|+++.+ .|+|||.|++..-
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 456666544 444454332 278999999 9999999999754
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00051 Score=68.86 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCC-CC--CCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LP--YPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~-Lp--fp~~sFD~I~~ 114 (458)
.++|||+=|=||.|+.+.+..|. .+++.+|.|..+++.|+++ ++ ...+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999999887664 4899999999999999887 33 45677766533 11 12368999998
Q ss_pred cccc-----ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 115 ARCG-----VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 115 ~~~l-----~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
---. .....+-..++..+.++|+|||.++++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3211 111223346888999999999999887763
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0045 Score=61.04 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=88.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCC--CCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYP--SLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp--~~sFD~I~~ 114 (458)
.++.+|+|-|.|+|+++.++++.-.|..++...|+++.-.+.|++. + -++.+..-|.....|. +..+|.|+.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 4456999999999999999999877889999999999888888765 3 3667777776666554 467898874
Q ss_pred ccccccccccHHHHHHHHHhcccCCc-EEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG-~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
- ++ .|-.++--++.+||.+| +|+-..|+. +..++-.+.+.+.+|..+..
T Consensus 184 D-----lP-aPw~AiPha~~~lk~~g~r~csFSPCI------------EQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 184 D-----LP-APWEAIPHAAKILKDEGGRLCSFSPCI------------EQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred c-----CC-ChhhhhhhhHHHhhhcCceEEeccHHH------------HHHHHHHHHHHhCCCceEEE
Confidence 3 33 34456777788998876 676666643 22345566677778876653
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0006 Score=63.61 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=67.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|+|+|||.|.++.++..+.... +|+-++.. ..+..+-+ .|+ +-++. ......++..||++.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSL---QVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCCc
Confidence 589999999999998886332211 23333332 22332211 222 11111 01112345689999865432
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccce
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWD 431 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~ 431 (458)
..+..++-++-|.|+|||++++.+ ..+..+++.++++...++
T Consensus 108 ---------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 ---------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 235667888999999999999975 455677888888888885
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00057 Score=64.53 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=79.8
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc--cccc---ccccccccCCCCCCccccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR--GFVG---VLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r--gl~g---~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
+||++++.|||-|-|.+.|..+-+.+.++-++|.- |..+-+| |+-. .-.+-.+..| +.+|||||.+.++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~A----l~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~SEVl 116 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRA----LARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVLSEVL 116 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHH----HHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-G
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHH----HHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEEehHh
Confidence 79999999999999999999776677777665432 1111111 1110 1111122233 4799999999999
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE---eccHH-------HHHHHHHHHhhccceEEEEeeccCC-CccEEEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTAR-------LIESARALTTRLKWDARVIEIESNS-DERLLICQ 449 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~---~d~~~-------~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~ 449 (458)
--+ .+.-.+..++-.|...|+|||.+|+ ||... --+.|.+|+...-=++.-..-..++ .|.-|+++
T Consensus 117 YYL---~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 117 YYL---DDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp GGS---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred HcC---CCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 877 4444566778888899999999998 44332 1466777766665555544443333 36556553
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=65.09 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=64.7
Q ss_pred eEEeeccccchhhhhhhhccCCC-eEEEEeecCCCCCCchhhhc----cccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~~~l~~~~~----rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|..+.++...... |..+-+-| ..+..+-+ .|+-...+ +..-..+||+|.++-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 67999999999888877632222 33222211 22332222 23311111 1110116999986533222
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+..++-++-|+|+|||++|+.+-. +..+.+.+.+....+++....
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence 235677999999999999998533 345677777777778765543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00022 Score=72.53 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
+.|+|+|||.|.++.+|.... +--|.-|=|.... .+...+ -..+-+.+..-=-+.++. +.+||+|-+.+++-+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 789999999999988887332 2223333332211 111111 001111111100122332 247999999988765
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. -+...+|-|+-|+|||||.+++.
T Consensus 201 ~------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 4 35678999999999999999974
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0005 Score=68.93 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccC-CCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAF-PTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~-~~yp~t~dl~h~~~~~~ 381 (458)
.+|||+|||.|.++.++. ....- .|+-+|-. ..+..+-++ |+-..+...+... ...+..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa--~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAAL--KLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHH--HcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 589999999999887776 32211 23333322 233332221 2211122222211 22246899999865443
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 435 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~ 435 (458)
. +..++-++-|+|+|||++++..-. +-.+++.+.+++- |+....
T Consensus 237 ~---------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 V---------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H---------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 2 235788999999999999996432 2345566655554 665443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=62.13 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=75.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh---------hccccccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~---------~~rgl~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
+.|||+|||.|.++..|.+++. +|+-++-. +.+..+ -+||+.-+-+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 5799999999999999985433 33333332 333332 123344456777776653 479998554
Q ss_pred ccccccc---------------cCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEEEe
Q 012709 378 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 378 ~~~~~~~---------------~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
.-|.... .......+..++-++.|+|+|||.+++--. ....+++.+++....|+.....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 4332100 000112245688999999999999876422 2234677888888888766544
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00066 Score=64.17 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=57.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc-----cccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg-----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|+|+|||.|.++.++.....+- -+++-++.. ..+..+-++. +--+..|-.+ .+.-+.+||+|+++..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~--~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDR--GKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCC--ceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 589999999999999887432110 022222222 2333333322 1111122222 222235899999776654
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. .....++-++-++|+|||++++.+
T Consensus 118 ~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 346678999999999999999853
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00039 Score=68.05 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=57.5
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----c-ccccccccccCCCCCCccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l-~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-.+|+|+|||.|.++..|.++-... +|+-+|.. .-+..+-++- + .+-..+| . .+.+||+|+++..|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~---~--~~~~fD~v~~~~~l 103 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAA---RITGIDSSPAMLAEARSRLPDCQFVEADIASW---Q--PPQALDLIFANASL 103 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHhCCCCeEEECchhcc---C--CCCCccEEEEccCh
Confidence 4789999999999998887431111 22222322 2222222220 1 1222222 1 23589999999888
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
... . +...++-+|-|+|+|||.+++.
T Consensus 104 ~~~---~---d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 104 QWL---P---DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hhC---C---CHHHHHHHHHHhcCCCcEEEEE
Confidence 654 2 3467899999999999999985
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0061 Score=62.48 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=88.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+.+|||.=||.|.|+..+++.+.+ +|+++|+++.++...+++ +. .+....+|+...+..-+.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 569999999999999999998864 499999999999988776 22 366778888887765588999998742
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
. ....++..+.+.+++||.+-+.........+. ...+.+...+.+.+.
T Consensus 266 -~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~------~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 -K---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE------RPEKRIKSAARKGGY 313 (341)
T ss_pred -C---cchhhHHHHHHHhhcCcEEEEEeccchhhccc------chHHHHHHHHhhccC
Confidence 1 23458888999999999999988754221110 124556666666654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.009 Score=61.12 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..++||+||++|.++..|+++|. .|+++|..+ |-.. .....++.....+.....-+.+.+|.++|--+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv----- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQS-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV----- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHh-hhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----
Confidence 4567999999999999999999875 899999554 3222 23345677766665444222578999998632
Q ss_pred ccHHHHHHHHHhcccCC--cEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPG--GYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPG--G~liis~~ 147 (458)
..|.+++.-+.+.|..| ..+++.-.
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 35677888888888777 45666554
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00032 Score=58.18 Aligned_cols=90 Identities=27% Similarity=0.290 Sum_probs=45.6
Q ss_pred eeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--ccccc-cccccCCCCC-Ccccccccccccc
Q 012709 311 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYP-RTYDLVHAEGLLS 381 (458)
Q Consensus 311 ~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g~~~-~~~~~~~~yp-~t~dl~h~~~~~~ 381 (458)
||+|||.|.+...|++.- -...++-+|-+ +-+..+-+| +. .-... +--+.+...+ .+||+|.+.++|.
T Consensus 1 LdiGcG~G~~~~~l~~~~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 799999999999998542 22233334433 444322222 21 00111 1112233333 4999999999998
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWV 409 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~ 409 (458)
.+ =.+..++-.+-+.|+|||.+
T Consensus 78 ~l------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------S-HHHHHHHHTTT-TSS-EE
T ss_pred hh------hhHHHHHHHHHHHcCCCCCC
Confidence 76 24567899999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.001 Score=63.56 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=66.7
Q ss_pred eEEeeccccchhhhhhhhccCC---CeEEEEeecCCCCCCchhhhccccccccccccc---------cCCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK---SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~---~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~---------~~~~yp~t~dl~h 375 (458)
.+|||+|||+|+|+..|.++-. .|..+-+.|. +.+ .|+.-+-.|... ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 4799999999999887764321 2333333321 111 122222223222 233 35789988
Q ss_pred ccccccccccCCCCC--------CcchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccce-EEEEeecc--
Q 012709 376 AEGLLSLESGHRHRC--------STLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWD-ARVIEIES-- 439 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c--------~~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~-~~~~~~~~-- 439 (458)
++...... .... .++.+|-|+=|+|+|||.+++.. ..+++.++++ +|+ +.+.+...
T Consensus 123 S~~~~~~~---g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-----~f~~v~~~Kp~ssr 194 (209)
T PRK11188 123 SDMAPNMS---GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-----LFTKVKVRKPDSSR 194 (209)
T ss_pred cCCCCccC---CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-----CceEEEEECCcccc
Confidence 65432211 1110 12468899999999999999942 2233333322 343 44443322
Q ss_pred -CCCccEEEEEe
Q 012709 440 -NSDERLLICQK 450 (458)
Q Consensus 440 -~~~~~~~~~~k 450 (458)
.+.|..+||..
T Consensus 195 ~~s~e~~~~~~~ 206 (209)
T PRK11188 195 ARSREVYIVATG 206 (209)
T ss_pred ccCceeEEEeec
Confidence 23488888863
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.004 Score=67.62 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC-------ccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCC-----CCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL-----PYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~-------~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~L-----pfp~ 106 (458)
...+|||.|||+|.+...++.+.. ...++.|+|+++..+..|+.+ + ....+...+.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 345899999999999988876421 125789999999999988765 1 1223333332111 1112
Q ss_pred CCeeEEEeccc
Q 012709 107 LSFDMLHCARC 117 (458)
Q Consensus 107 ~sFD~I~~~~~ 117 (458)
+.||+|+++--
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 57999999743
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0019 Score=63.67 Aligned_cols=137 Identities=22% Similarity=0.340 Sum_probs=76.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc---cc---c-cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF---V-GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r---gl---~-g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-+|+|+|||.|.++.+|...-... +|+-++.. ..+..+-++ +. + =+-.|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~---~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA---EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 469999999999999997432111 33333332 333332221 21 1 12234444443 368999976533
Q ss_pred ccccc------cC-C-C---------CCC---cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccce-EEEEeec
Q 012709 380 LSLES------GH-R-H---------RCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD-ARVIEIE 438 (458)
Q Consensus 380 ~~~~~------~~-~-~---------~c~---~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~-~~~~~~~ 438 (458)
+.... .. . . ... +..++-++-++|+|||++++.-...--+.+++++....+. +... .+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC
Confidence 22110 00 0 0 001 2356777889999999999964444456677787776665 3333 23
Q ss_pred cCCCccEEEEEe
Q 012709 439 SNSDERLLICQK 450 (458)
Q Consensus 439 ~~~~~~~~~~~k 450 (458)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 344588888765
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.003 Score=60.29 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC----CeEEEeeccCC-C-CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQ-L-PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~----~~~~~~~d~~~-L-pfp~~sFD~I~~~~ 116 (458)
..+++||+||-|-|.....+..+.. ..=.-++.+++.++..++.+. ++.+..+--++ + .++++.||-|+--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yD- 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYD- 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEee-
Confidence 4457999999999999999887642 345678999999999888754 34444333222 2 3678899999854
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+-..-++...+.+.+.|+|||+|.+-+..
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 332333355578889999999999987754
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00036 Score=69.96 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcc-ccccccccccccC--CCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~--~~yp~t~dl~h~~~~~~ 381 (458)
-+|||+|||.|+|..+|.+. +-.|..+-+.|.-..+.+.++-+| +++-+..|-+.+. ...+-++|+|-++-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC--
Confidence 47999999999999988743 123555543322111344444443 5666777766542 111236777743321
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
..=....+++|+.|+|+|||+|+|
T Consensus 212 ------~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 212 ------QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ------CcchHHHHHHHHHHhccCCCEEEE
Confidence 001122456799999999999998
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0048 Score=58.77 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=68.8
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEE
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLH 113 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~ 113 (458)
-.+..+|+|+||-+|+++..++++......|+++|+.+-- --..+.+.++|+..-+ +....+|+|+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~ 116 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVL 116 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEE
Confidence 3456799999999999999999876555569999997641 1234777887766543 3344579999
Q ss_pred eccc---cccccccH-------HHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARC---GVDWDQKD-------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~---l~~~~~~~-------~~~L~ei~RvLkPGG~liis~~ 147 (458)
|-.. --++..|. ..++.-+..+|+|||.|++-..
T Consensus 117 sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 117 SDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 6422 11111111 2456667789999999999876
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0021 Score=66.97 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=74.0
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~~l~ 119 (458)
-+|||..||+|..+..++++.....+|+++|+++.+++.++++ +. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC---
Confidence 4899999999999999998721124899999999999988776 33 3566666655441 1235799998642
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+ ..+..++..+.+.+++||.+.++....
T Consensus 123 -f-Gs~~~fld~al~~~~~~glL~vTaTD~ 150 (374)
T TIGR00308 123 -F-GTPAPFVDSAIQASAERGLLLVTATDT 150 (374)
T ss_pred -C-CCcHHHHHHHHHhcccCCEEEEEeccc
Confidence 2 244569999999999999999995443
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0051 Score=65.23 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC---CCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp---~~sFD~I~~ 114 (458)
.+..+|||+=||.|.|+..|+++.. +|+|+|+++++++.|+++ ++ ++.+..++++..... ...||.|+.
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 3456999999999999999997654 899999999999998776 33 588888887776422 357899985
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
--- -..-...+++.+. -++|-..+++|..
T Consensus 369 DPP---R~G~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 369 DPP---RAGADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred CCC---CCCCCHHHHHHHH-hcCCCcEEEEeCC
Confidence 421 1111223455444 4577788888875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00032 Score=68.30 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=57.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccc--cccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~--g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||++||+|-++..|.++-.+-. .|+-+|-+ +-|.++-+| |+. =....=.|.+|.-..|||.+=++..+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~--~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNG--KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CEEEEeCCChHHHHHHHHHHCCCcc--EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4899999999999888874312211 34444544 566665544 331 11122234455434799999877666
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-.. ++....|-||=|+|||||.++|=
T Consensus 127 rn~------~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 127 RNF------PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp GG-------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhh------CCHHHHHHHHHHHcCCCeEEEEe
Confidence 544 45677899999999999999973
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.005 Score=57.85 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC-CCCCC--CeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L-pfp~~--sFD~I~~ 114 (458)
...++||+=+|+|.++...+++|.. .++.+|.+...++..+++ + .++.+...|+... +.... .||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3469999999999999999999864 899999999999988887 3 4566666665532 22223 4999997
Q ss_pred ccccccccccHHHHHHH--HHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLE--VDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~e--i~RvLkPGG~liis~~ 147 (458)
---+..-.-+....+.. -..+|+|+|.+++-..
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 54322101111223333 5688999999999764
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00037 Score=63.18 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=48.9
Q ss_pred eEEEeeccCCCCCCCCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 92 AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 92 ~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
+.+.+-.....+|.++|.|+|+|..++.|++-+.+ .++++++|+|||||++-++.|....
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 33333334566899999999999999999886544 7999999999999999999987753
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0013 Score=63.64 Aligned_cols=121 Identities=23% Similarity=0.344 Sum_probs=71.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccc--cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl--~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||.|.|+.++...-... +|+-++.. ..+..+ -..|+ +-++ .|+-+.++ +.+||+|-++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 479999999999999998431121 33333332 223222 12343 1122 23333343 368999987654
Q ss_pred ccccccC---CCCCC-----------------cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 380 LSLESGH---RHRCS-----------------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 380 ~~~~~~~---~~~c~-----------------~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
|...... ...+. ...++-++-|+|+|||.+++.......+++++++....++..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 4321000 00000 125677899999999999998766667788888888777643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.006 Score=68.62 Aligned_cols=126 Identities=13% Similarity=-0.016 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcC----------------------------------
Q 012709 21 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---------------------------------- 66 (458)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~---------------------------------- 66 (458)
.+...+.++..+....+ ...+...++|-+||+|.+....+...
T Consensus 170 ~Apl~etlAaa~l~~a~---w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 170 EAPLKENLAAAILLRSG---WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCcHHHHHHHHHHcC---CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 34455555554443322 11234689999999999987765410
Q ss_pred -------CccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCC--CCCeeEEEecccccccccc---HHHH
Q 012709 67 -------LLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP--SLSFDMLHCARCGVDWDQK---DGIL 128 (458)
Q Consensus 67 -------~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp--~~sFD~I~~~~~l~~~~~~---~~~~ 128 (458)
....+++|+|+++.+++.|+++ |+ .+.+..+|..+++.+ .++||+|+++--.-.-..+ ...+
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~l 326 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIAL 326 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHH
Confidence 0113689999999999999887 44 367888888887654 3579999998442221111 1233
Q ss_pred HHH---HHhcccCCcEEEEEeCCC
Q 012709 129 LLE---VDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 129 L~e---i~RvLkPGG~liis~~~~ 149 (458)
..+ ..+...+|+.+++.+...
T Consensus 327 Y~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 327 YSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCH
Confidence 333 334444898887776533
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0012 Score=65.41 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=81.1
Q ss_pred CCCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchh----hhhhhhccCC--CeE
Q 012709 259 GVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGG----FNSALLEKGK--SVW 332 (458)
Q Consensus 259 ~~~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~----faa~l~~~~~--~~~ 332 (458)
-++...|.-|...|....+.....+......+ .--.|+|+|||+|- .|-.|.+... .-|
T Consensus 67 ti~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~---------------~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~ 131 (264)
T smart00138 67 TTNETRFFRESKHFEALEEKVLPLLIASRRHG---------------RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREP 131 (264)
T ss_pred hcCCCcccCCcHHHHHHHHHHhHHHHHhcCCC---------------CCEEEEeccccCChHHHHHHHHHHHHhhhcCCC
Confidence 34567799999999997766543221111111 22579999999994 5655653211 123
Q ss_pred EEEeecCCCC-CCchhhhcccc-----------------------------------ccccccccccCCCCCCccccccc
Q 012709 333 VMNVVPTIGT-NHLPMILDRGF-----------------------------------VGVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 333 ~m~v~~~~~~-~~l~~~~~rgl-----------------------------------~g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
...|+-+|-. .-|..+- +|. .=..||-.+.-+ -+..||+|.+
T Consensus 132 ~~~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c 209 (264)
T smart00138 132 DVKILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFC 209 (264)
T ss_pred CeEEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe
Confidence 4455555543 3333221 221 001344444321 2468999998
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEeccHH
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 416 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~ 416 (458)
.++|.... .=....++-++-|+|+|||++++-....
T Consensus 210 rnvl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 210 RNVLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred chhHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 88876551 1224468999999999999999976543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00038 Score=67.51 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cc---cc-ccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g-~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++..|.++ ..|-+ +|+-+|-+ +-|..+-++ +. +- +..|.++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 57999999999999888732 11211 23333332 333332221 21 11 1223332 22 1 358888877
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
..+..+. .=....+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~----~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP----PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC----HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7665441 11245789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0031 Score=62.17 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=56.4
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--CC----CeEEEeeccCCCCCCCCCeeEEEec
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GL----PAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~~----~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
..++..|||||.|||.++..|++++. +|+++|+.+.|+....+| |. ..++..+|....++| .||.++++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 34568999999999999999999875 899999999999998888 32 345666676665554 59999986
Q ss_pred c
Q 012709 116 R 116 (458)
Q Consensus 116 ~ 116 (458)
-
T Consensus 131 l 131 (315)
T KOG0820|consen 131 L 131 (315)
T ss_pred C
Confidence 3
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0058 Score=60.48 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=63.7
Q ss_pred cCCCCEEEEECCC--CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCC--eEEEeeccCCC------------
Q 012709 42 LAGVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQL------------ 102 (458)
Q Consensus 42 ~~~~~~VLDVGCG--~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~--~~~~~~d~~~L------------ 102 (458)
..+.+..||+||| |......++++..|..+|+-+|..+-.+..++.. ..+ ..+..+|..+.
T Consensus 66 ~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 66 EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3478899999999 4467777887777889999999999988866554 334 67888876542
Q ss_pred -CCCCCCeeEEEeccccccccc--cHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 103 -PYPSLSFDMLHCARCGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 103 -pfp~~sFD~I~~~~~l~~~~~--~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.+ ++..=++ ...+++++.+ ++..++..+...|.||.+|+++...
T Consensus 146 lD~-~rPVavl-l~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDF-DRPVAVL-LVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --T-TS--EEE-ECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCC-CCCeeee-eeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 22 2334344 4446666654 5668999999999999999999763
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00079 Score=65.71 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=67.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-----cccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-----LHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-----~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-+|||.+||+|=+|..+.+.-. .-.|+-.|-+ +-|.+.-+|-- .|. .+.=-|.+|.-..|||++-.+..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG---TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC---CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 5899999999999999985422 3344445544 66666666543 121 122224456556899999877777
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-.. =+++..|=||-|+|+|||-+++=
T Consensus 130 rnv------~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 130 RNV------TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcC------CCHHHHHHHHHHhhcCCeEEEEE
Confidence 655 26788999999999999988763
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00043 Score=67.15 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc-ccccccccccccCCCCCCccccccccccc
Q 012709 302 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 302 ~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|+.+++|+|+|+|.|.|++++......+ .++-.|-|..+..+-+. .+--+=||. |.++|. ||++...+++
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNL---RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTS---EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCC---cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhh
Confidence 458899999999999999999998654433 23334444434443331 121122332 456667 9999999999
Q ss_pred cccccCCCCCCcchhhhhhcccccCC--ceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPE--GWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~--g~~~~~ 412 (458)
..|.. -....||=-+=+.|+|| |.++|-
T Consensus 169 h~~~d----~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 169 HDWSD----EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp GGS-H----HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhcch----HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 98842 23345888889999999 999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0029 Score=63.82 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=39.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
....++|.+||.|..+..+++...+..+|+|+|.++.+++.|+++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 345999999999999999998753457999999999999999876
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0033 Score=62.86 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=80.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---c-cccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---V-GVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~-g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|+|+|||.|.++.+|...-... +|+-++-. ..+.++-+ .|+ + =+-.||.++++. ..||+|=++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~---~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA---EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 469999999999999998322211 34444443 34444333 233 1 223577776642 3799986541
Q ss_pred cccc------------ccc------CCCCC-CcchhhhhhcccccCCceEEEeccHHHHHHHHHHHh-hccce-EEEEee
Q 012709 379 LLSL------------ESG------HRHRC-STLDIFTEIDRILRPEGWVIIRDTARLIESARALTT-RLKWD-ARVIEI 437 (458)
Q Consensus 379 ~~~~------------~~~------~~~~c-~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~-~~~w~-~~~~~~ 437 (458)
=+.. +.+ +.+.- .+..++-+.-+.|+|||++++--...--+.++++.. ...|. +.+++
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~- 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGR- 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEec-
Confidence 1100 000 00000 133678888999999999999766555667777766 45674 44433
Q ss_pred ccCCCccEEEEEe
Q 012709 438 ESNSDERLLICQK 450 (458)
Q Consensus 438 ~~~~~~~~~~~~k 450 (458)
+-.+.++++++++
T Consensus 270 D~~g~~R~~~~~~ 282 (284)
T TIGR00536 270 DLNGKERVVLGFY 282 (284)
T ss_pred CCCCCceEEEEEe
Confidence 2344588988865
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0033 Score=60.15 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------C---CCeEEEeeccCCCCCCC--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------G---LPAMIGSFASKQLPYPS-- 106 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------~---~~~~~~~~d~~~Lpfp~-- 106 (458)
.+...++|+|||.|......+-.. .....+|+|+.+...+.|.+. + .++.+..+|..+.++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 345799999999998776665432 122589999999877666432 2 24455566544332211
Q ss_pred -CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 107 -LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 107 -~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
..-|+|+++... +.++.-..|.++..-||+|-+++-.
T Consensus 120 ~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 346999998642 3333345678888889998887643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.019 Score=54.93 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=76.9
Q ss_pred EEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCC-CeeEEEecccccc
Q 012709 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSL-SFDMLHCARCGVD 120 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~-sFD~I~~~~~l~~ 120 (458)
|.||||-.|.+..+|++.+. ...++++|+++.-++.|+++ + -.+.+..+|... +++.+ ..|.|+.+.+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 68999999999999999874 56799999999999999876 3 246666666432 23333 3788887754111
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
-....|.+....++..-.|++.-.. ....+++.+...+|..+.+.
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~--------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNT--------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS---------------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCC--------------ChHHHHHHHHHCCCEEEEeE
Confidence 1235666666777766778886431 24568888999999998865
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=58.78 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCEEEEECCCCchhHHHHh-hcCCccceEEEEcCCHHHHHHHHHc-------CCCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La-~~~~~~~~v~gvD~S~~~i~~A~er-------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
+++|+=||||.=-++..+. ++..+...|+++|+++++++.+++- +....+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4699999999776655554 3333456899999999999988653 4467888888776665556899999774
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+..... +-.++|..+.+.++||..+++-.
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 344333 33489999999999999999975
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00076 Score=65.98 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=57.3
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cc---ccccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|||+|||.|..+.+|.+. ..|-+ .|+-+|.. .-+..+-+| |+ +-++..-.+.++. ..||++-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 46999999999998887631 12222 23333432 333333222 22 2222211122221 3488877766
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+..+. ......++-||-|+|+|||.+++.|
T Consensus 134 ~l~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 665541 2334678999999999999999976
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0019 Score=61.00 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCcccccc--chhhHHHHHHHHH-HhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhcc-CCCeEEE
Q 012709 259 GVHPEEFAE--DTENWKTAVGNFW-SLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEK-GKSVWVM 334 (458)
Q Consensus 259 ~~~~~~f~~--d~~~w~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~-~~~~~~m 334 (458)
|+..+.|.. +...++..|..-. ..+. +..+ -.|+|||||.|.|+.++... ...-
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~~l~~l~--~~~~-----------------~~vlDlG~GtG~~s~~~a~~~~~~~--- 66 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRALALSKLR--LRKG-----------------DMILDIGCGTGSVTVEASLLVGETG--- 66 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHHHHHHcC--CCCc-----------------CEEEEeCCcCCHHHHHHHHHhCCCC---
Confidence 566667775 3457777775421 1111 1121 37999999999998765411 1111
Q ss_pred EeecCCCC-CCchhhhc----ccccc---c-cccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccC
Q 012709 335 NVVPTIGT-NHLPMILD----RGFVG---V-LHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRP 405 (458)
Q Consensus 335 ~v~~~~~~-~~l~~~~~----rgl~g---~-~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp 405 (458)
.|+-++.. .-+..+-+ -|+.. + -.|..+..+.++..||.+...+ ....+..++-++-|+|+|
T Consensus 67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~Lkp 137 (198)
T PRK00377 67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKK 137 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCC
Confidence 23333332 22222211 13211 1 1233332333335688876422 123456788899999999
Q ss_pred CceEEEe-ccHHHHHHHHHHHhhccceEEEEee
Q 012709 406 EGWVIIR-DTARLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 406 ~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
||.+++. -..+.+.++...++...++..+.+.
T Consensus 138 gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 138 GGRIVIDAILLETVNNALSALENIGFNLEITEV 170 (198)
T ss_pred CcEEEEEeecHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999983 3445567777777777776655543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0011 Score=63.51 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=50.2
Q ss_pred eEEeeccccchhhhhhhhccCCC---eEEEEeecCCCCCCchhh----hcccc---ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~---~~~m~v~~~~~~~~l~~~----~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
..|||+|||+|.+++.|.+.-.+ |..+-..| ..+..+ -+.|+ .=+..|..+.++. ...||+|+.+
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 47999999999999988743222 33332221 222221 22343 1122344333333 2579999865
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..... +.-++-+.|+|||.+++-
T Consensus 154 ~~~~~------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGPK------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCccc------------ccHHHHHhcCcCcEEEEE
Confidence 43322 334566889999999983
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00086 Score=63.91 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--c----cccccccccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--V----GVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~----g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
-+|+|+|||.|.++..+...... ++-++.. ..+..+-+ -|+ + +-..++.. ..|.+||+|.+
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~ 118 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTC 118 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEe
Confidence 57999999999999888732222 2222221 22222211 122 1 22222221 22578999998
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+++... .+...+|-++-++|+|||.+++.+
T Consensus 119 ~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHV------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhC------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 8877654 245678999999999999999864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.001 Score=64.41 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=59.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
.+|||+|||+|-++.+|.++- . -+|+-+|-+ +-|.+.-+++ ...+.-.+.+|.=+.+||+|-+...+-..
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS--- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---
Confidence 579999999999999988331 2 245555654 5555554443 12233344455434799999987765433
Q ss_pred CCCCCcchhhhhhcccccCCc
Q 012709 387 RHRCSTLDIFTEIDRILRPEG 407 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g 407 (458)
-+.+..|-||-|+|||.+
T Consensus 124 ---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 ---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCHHHHHHHHHHHhcCce
Confidence 356789999999999954
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0048 Score=55.14 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----cCCccceEEEEcCCHHHHHHHHHcCC--------CeEEEeeccCCCCCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--------PAMIGSFASKQLPYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~-----~~~~~~~v~gvD~S~~~i~~A~er~~--------~~~~~~~d~~~Lpfp~~sF 109 (458)
.+..+|+|+|||.|.++..|+. . +..+|+++|.++..++.|.++.. ...+...+..... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 4567999999999999999987 3 45699999999999888876621 1222222221111 13456
Q ss_pred eEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 DMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++++.. |-..+.. .+|+-+.+ |+-.+++..|+=
T Consensus 101 ~~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 101 DILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred eEEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 666643 3343333 44554444 766666665543
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0022 Score=60.38 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=66.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccccccccccccc--C--CCCC-Ccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEA--F--PTYP-RTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~--~--~~yp-~t~dl~h~~ 377 (458)
+.|||+|||.|.|+.+|.++.... ||+-++-. .-+..+ -..|+-.+..--|.. + ..+| .++|.++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~---~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDK---NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCC---CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 579999999999999998543222 33333332 222221 223331111111111 1 1134 388988754
Q ss_pred ccccccc---cCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhh-ccceE
Q 012709 378 GLLSLES---GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR-LKWDA 432 (458)
Q Consensus 378 ~~~~~~~---~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~-~~w~~ 432 (458)
.- ..|. ..+.|+....++-++-|+|+|||.+++. |.....+.+.+.+.. -+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 21 1121 0134566678899999999999999986 555556655555443 23443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0014 Score=58.96 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=60.8
Q ss_pred eEEeeccccchhhhhhhhc-cCCCeEEEEeecCCCC-CCchhhhc----cccc--ccc-ccccccCCC-CCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV--GVL-HDWCEAFPT-YPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~-~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~--g~~-~~~~~~~~~-yp~t~dl~h~~ 377 (458)
-+|||+|||+|-++=.|.+ ...+.=++.| |-. .-+..+-. .|+- =.+ .|+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999988882 2222223333 322 33333222 3442 111 22222 221 44789999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
+++... .....++-+|=|.|+|+|.+++.+..
T Consensus 81 ~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888443 34457788999999999999998766
|
... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=58.58 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=74.2
Q ss_pred ccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEE
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMI 94 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~ 94 (458)
|=......+.+.+.+.. .....|||||+|+|.++..|++.+ .+++++|+++.+.+..+++ ..++.+
T Consensus 12 FL~~~~~~~~Iv~~~~~--------~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~v 80 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDL--------SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEV 80 (262)
T ss_dssp EEEHHHHHHHHHHHHTC--------GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEE
T ss_pred eeCCHHHHHHHHHhcCC--------CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhccccee
Confidence 43334555666666643 245799999999999999999876 3899999999999999885 457889
Q ss_pred EeeccCCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccC
Q 012709 95 GSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 138 (458)
Q Consensus 95 ~~~d~~~Lpfp~---~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkP 138 (458)
...|...+..+. .....|+++- ++. -...++.++...-+.
T Consensus 81 i~~D~l~~~~~~~~~~~~~~vv~Nl---Py~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 81 INGDFLKWDLYDLLKNQPLLVVGNL---PYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp EES-TTTSCGGGHCSSSEEEEEEEE---TGT-GHHHHHHHHHHHGGG
T ss_pred eecchhccccHHhhcCCceEEEEEe---ccc-chHHHHHHHhhcccc
Confidence 999988887654 4566777663 221 223466666653344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.001 Score=64.02 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=59.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccc--cccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGV--LHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~--~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||.|.++..|. ... .+|+-++.. +.+..+-++ |+-.. ..++.+-....+-+||+|.++.+|
T Consensus 50 ~~vLdiG~G~G~~~~~l~--~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 50 KRVLDVGCGGGILSESMA--RLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CeEEEeCCCCCHHHHHHH--HcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 359999999999999888 332 234444433 333333222 32111 122322111223689999998887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
... . +...+|-++.|+|+|||.+++..
T Consensus 125 ~~~---~---~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHV---P---DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hcc---C---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 765 2 34578999999999999999864
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0067 Score=57.23 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++|||+|+|+|..+...++.|. ..++..|+.+..++..+-+ +..+.+...|.. ..+..||+++.+.+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeecccc---CCCcceeEEEeeceec
Confidence 457999999999998888888774 3788899988777665433 445555544332 2667899999998766
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.-+ .-.+++.-..++...|-.+++.+|..
T Consensus 154 ~~~-~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 154 NHT-EADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred Cch-HHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 544 33467774555555555566666544
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.022 Score=58.92 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=74.5
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCc-cceEEEEcCCHHHHHHHHHc----CCC-eEEEeeccCCCC--CCC-CCeeEE
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPS-LSFDML 112 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~-~~~v~gvD~S~~~i~~A~er----~~~-~~~~~~d~~~Lp--fp~-~sFD~I 112 (458)
..++.+|||.-++.|.=+.+++..... +..|+++|.++.-++..+++ |.. +.+...|...++ .+. +.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 455589999999999999888876432 34569999999877665554 554 466666665543 222 359999
Q ss_pred Ee----c--ccc-------cccccc--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 113 HC----A--RCG-------VDWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 113 ~~----~--~~l-------~~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+. + .++ ..+... ..++|..+.++|||||.++.++-...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 94 2 111 111111 12688899999999999999997553
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0095 Score=61.55 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=39.8
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 101 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~ 101 (458)
+|||+-||.|.++..|++... +|+|+|+++++++.|+++ ++ ++.+..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 799999999999999998654 899999999999998876 43 57777665443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.016 Score=58.30 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=87.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHH---HHHHHc----CC---------------------CeE---
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTLER----GL---------------------PAM--- 93 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i---~~A~er----~~---------------------~~~--- 93 (458)
.-+||-=|||.|.++..|+..|+ .+-|-+.|--|+ .++... +. ++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 34799999999999999999886 677888888775 233311 00 000
Q ss_pred --------------EEeeccCCC-C--CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccc
Q 012709 94 --------------IGSFASKQL-P--YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 156 (458)
Q Consensus 94 --------------~~~~d~~~L-p--fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~ 156 (458)
...+|..+. + -..++||+|+..+ ++.-..+.-.+|..+..+|||||+++=.+|...+-....
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~ 306 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH 306 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC
Confidence 000111110 0 1124799999764 454444556899999999999999999988764422111
Q ss_pred c---H-HHHHHHHHHHHHHHhhccEEEEee
Q 012709 157 N---K-ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 157 ~---~-e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. . -.....+.+..+++..+|+.+.++
T Consensus 307 g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 307 GVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 1 1 112336888899999999999876
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0012 Score=65.30 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=54.3
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhc----ccccc--c-cccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFVG--V-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g--~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|..+..+... .... .|+-++.. ..+..+-+ .|+-. . ..|. +.++..+.+||+|+++.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~---~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNC 154 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcC
Confidence 59999999998754333211 2211 12223322 33333322 22210 0 1122 22332246999999887
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
++... -+...++=|+=|+|||||.+++.|
T Consensus 155 v~~~~------~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLS------PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCC------CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 76543 134578999999999999999854
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0047 Score=59.91 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=48.1
Q ss_pred EEeeccccchhhhhhhhccC--CCeEEEEeecCCCCCCch----hhhcc-ccccccccccccC--CCCCCcccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGL 379 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~--~~~~~m~v~~~~~~~~l~----~~~~r-gl~g~~~~~~~~~--~~yp~t~dl~h~~~~ 379 (458)
.|||+|||.|++...|.+.- ..|..+-+-| .-|. .+-+| ++.-+..|-.++. ...+.++|.|=
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~---- 146 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY---- 146 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE----
Confidence 69999999999999997321 1244332222 1111 11122 2333334443321 11234577753
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+.. ...=....+|-|+-|+|||||.++|
T Consensus 147 -~d~---~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 147 -QDV---AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -ECC---CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 111 0000011246699999999999999
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0049 Score=58.84 Aligned_cols=96 Identities=23% Similarity=0.223 Sum_probs=55.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cccc-ccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~-~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|+|+|||.|.++..+.+...+. -+|+-++.. +.+..+-++ ++ +-++ .|..+ ++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKT--GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 469999999999988886322100 022222322 222222111 11 1111 12221 222246899998766
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
++.. ..+...+|-++-++|+|||.+++-
T Consensus 130 ~l~~------~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 130 GLRN------VPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccc------CCCHHHHHHHHHHhccCCcEEEEE
Confidence 5533 345678899999999999999874
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0018 Score=65.29 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=59.8
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhccccccccccccccC--CCCCCcccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAF--PTYPRTYDLVHAEGL 379 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl~g~~~~~~~~~--~~yp~t~dl~h~~~~ 379 (458)
..+.|+|+|||.|.++.++..+. |-. +++-.+-+..+.. +-+.|+-+-++-.+..| ..+| .+|++-.+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 56899999999999999998432 211 2333343333333 23345533222222222 1344 3798766666
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+-.+. .-....+|-++-|.|+|||.++|-|
T Consensus 225 lh~~~----~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 225 LYSAN----EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhcCC----hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54441 1123457889999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0018 Score=66.51 Aligned_cols=117 Identities=14% Similarity=0.063 Sum_probs=70.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc---ccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||.|.++..+.+.-.. -+|+-+|.. +.+..+-++.- +-+++.=.+.++.-+.+||+|-+.+.+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~---~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887632111 133334433 44444433310 112222222233334789999887777655
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH-----------------HHHHHHHHHHhhccceEE
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------RLIESARALTTRLKWDAR 433 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----------------~~~~~~~~~~~~~~w~~~ 433 (458)
. +...+|-|+-|+|+|||.+++-+.. ...+++.+++++..++..
T Consensus 192 ---~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 192 ---P---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred ---C---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 2 2346899999999999999874321 023666777777777643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0019 Score=61.49 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=51.5
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCCCCchhhhcccccc---cc-ccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGTNHLPMILDRGFVG---VL-HDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~~~l~~~~~rgl~g---~~-~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||+|.+++.|.+. + ..|..+-+.|.-....-.-+...|+-. ++ .|-.+.++. ..+||.|.+...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 46999999999999877632 1 223333332221100001122334422 22 244443433 3689999977655
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..+ .=|+-|.|+|||.+++-
T Consensus 153 ~~~------------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI------------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh------------hHHHHHhcCcCcEEEEE
Confidence 433 23667999999999984
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0065 Score=56.01 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=46.8
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCC--CCCCC-eeEEEec
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 115 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lp--fp~~s-FD~I~~~ 115 (458)
+|+|..||.|..+..+++... +|+++|+++..++.|+.+ |+ ++.+..+|...+. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 799999999999999999753 899999999999999887 43 6788888865431 22122 8999976
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.002 Score=70.92 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=60.7
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-ccccccccccCCC--CCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT--YPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~~~~~~~~~~--yp~t~dl~h~~~ 378 (458)
-.+|+|+|||.|.++.+|..+-.+ .+|+-.|-+ +.+..+-+| |. +-+++.=+..++. =|.+||++..+.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~---~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETED---KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 368999999999998887632221 133333433 333333222 11 1111111222331 147899999876
Q ss_pred ccccc----ccCC---CCCCcchhhhhhcccccCCceEEEecc
Q 012709 379 LLSLE----SGHR---HRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 379 ~~~~~----~~~~---~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
++-.+ ..+. +.-.+..+|-|+-|+|+|||.+++.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 65432 0000 112456889999999999999999874
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0059 Score=60.08 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=75.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccccccccccccCCC-CCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~~~~~~~~~-yp~t~dl~h~~~~~~ 381 (458)
.+|+|+|||.|.++-+|....... +|+-++.. ..+..+-+ -|+--+-.|+.+.++. ....||+|=++==+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 479999999999998886321211 23333432 33333221 1321122355444321 234689887654332
Q ss_pred ccc------cC----CCCCC----------cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccC
Q 012709 382 LES------GH----RHRCS----------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 440 (458)
Q Consensus 382 ~~~------~~----~~~c~----------~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~ 440 (458)
... ++ ..++. +..++-...++|+|||.+++--..+-..++..++....|+..+..+++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 110 00 00111 2367778889999999999865555677888888888898888876543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.005 Score=59.18 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=66.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-.|+|+|||.|.++..+. .... -+|+-++-. ..+..+-+ .|+ .-+-.|+.+.++ +.+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la--~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAA--AAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHH--HcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCC
Confidence 469999999999988887 3321 023333322 33332211 233 112235555443 3589999976433
Q ss_pred ccccc--------------C-CCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEE
Q 012709 381 SLESG--------------H-RHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 381 ~~~~~--------------~-~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
..-.. + ...+.+..++-++-|+|+|||.+++- .+....+++.+++++-.|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 21100 0 00112456777899999999999972 22223445555556556665544
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0015 Score=61.86 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccc--cccccccccCCCCCCcccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~--g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
=.+||+|||-|--|-.|.+++-.|-.+=..+..-.....++-++||- ....|.- .+ .+|..||+|-+..+|-.+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~-~~~~~yD~I~st~v~~fL-- 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN-DF-DFPEEYDFIVSTVVFMFL-- 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CB-S-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch-hc-cccCCcCEEEEEEEeccC--
Confidence 37899999999999999965554433322221111223345557773 2222322 23 357899999988788765
Q ss_pred CCCCCCcchhhhhhcccccCCceEEE
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
++-.+..|+--|-.-++||||+++
T Consensus 108 --~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 108 --QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp ---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred --CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 355677889999999999999988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.051 Score=56.73 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=74.4
Q ss_pred cccCccchhhHHHHHHHHHhhh-hcc---ccc---cCCCCEEEEECCCCchhHHHHhhc--------------CCccceE
Q 012709 14 ASLIFDGVEDYSHQIAEMIGLR-NES---NFI---LAGVRTILDIGCGYGSFGAHLFSK--------------ELLTMCI 72 (458)
Q Consensus 14 ~~~~fd~~~~~~~~l~~~l~~~-~~~---l~~---~~~~~~VLDVGCG~G~~~~~La~~--------------~~~~~~v 72 (458)
+.+.|.....+++.....+... .+. +.. .....+|+|+|||+|.++..+... ..+..++
T Consensus 26 g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv 105 (386)
T PLN02668 26 GEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSA 105 (386)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceE
Confidence 3466877766766555444211 111 111 113568999999999777655321 1234567
Q ss_pred EEEcCCHHHHHHHHH------------------cCCCeEEEee---ccCCCCCCCCCeeEEEecccccccccc-HH----
Q 012709 73 ANYEASGSQVQLTLE------------------RGLPAMIGSF---ASKQLPYPSLSFDMLHCARCGVDWDQK-DG---- 126 (458)
Q Consensus 73 ~gvD~S~~~i~~A~e------------------r~~~~~~~~~---d~~~Lpfp~~sFD~I~~~~~l~~~~~~-~~---- 126 (458)
..-|.-.+-....-+ .+.+.-+..+ ....-=||+++.+++||+.+ +||... |.
T Consensus 106 ~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS~vP~~l~d 184 (386)
T PLN02668 106 FFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLSQVPESVTD 184 (386)
T ss_pred EecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeecc-ceecccCchhhcc
Confidence 777755432211100 0111112211 11111288999999999987 677432 11
Q ss_pred ---------------------------------HHHHHHHhcccCCcEEEEEeCCCC
Q 012709 127 ---------------------------------ILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 127 ---------------------------------~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
.+|+-=.+-|+|||+++++.....
T Consensus 185 ~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 185 KRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred CCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCC
Confidence 233344567899999999987664
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=61.11 Aligned_cols=139 Identities=11% Similarity=0.097 Sum_probs=80.0
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-c-ccccccccc-CCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-V-GVLHDWCEA-FPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~-g~~~~~~~~-~~~yp~t~dl~h~~~~~ 380 (458)
+|+|+|||.|.++.+|..+ .+- .+|+-+|-. ..+.++-+ .|+ + =+-.|+.+. ++. ..+||+|-++-=+
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCC
Confidence 7999999999999887622 121 133444432 44443322 232 1 123455443 211 2369998875433
Q ss_pred cccc------------------cCCCCCC-cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccCC
Q 012709 381 SLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 441 (458)
Q Consensus 381 ~~~~------------------~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 441 (458)
.... ...+... +..++-+.-+.|+|||++++--..+--+.+++++....|+......+-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 1110 0000001 22566667789999999998555556678888988888874433334455
Q ss_pred CccEEEEEec
Q 012709 442 DERLLICQKP 451 (458)
Q Consensus 442 ~~~~~~~~k~ 451 (458)
.++++++++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 5999998753
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0059 Score=63.71 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=69.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-----CCchhhhcccccc---ccccc---cccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFVG---VLHDW---CEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-----~~l~~~~~rgl~g---~~~~~---~~~~~~yp~t~dl~h~ 376 (458)
..++|+|||.|.|..+|..+.... |++-++-. ..+.-+-.+||-. +-.|- .+.|+ +.++|.|+.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEE
Confidence 479999999999999998543222 33333322 1122344455411 12232 23444 368999986
Q ss_pred cccccccccCCCC-CCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhc-cceE
Q 012709 377 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWDA 432 (458)
Q Consensus 377 ~~~~~~~~~~~~~-c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~-~w~~ 432 (458)
..- ..|..+.+| =-...+|-|+=|+|+|||.+.++ |..+..+.+.+.+... +++.
T Consensus 199 nFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 HFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 421 234222222 11257899999999999999985 6666666655554433 5544
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0063 Score=53.73 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=35.6
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
++||||||.|.++..+++.+ +..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 455899999999999887765
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0047 Score=58.97 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=58.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 387 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~ 387 (458)
-.|-|||||-+-.|+++.+ ...|.-.-.|..+..-| +-|=. | -|+. .-+.|++= -++|+.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~~Vt---acdia-----~---vPL~--~~svDv~V--fcLSLM---- 133 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNPRVT---ACDIA-----N---VPLE--DESVDVAV--FCLSLM---- 133 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEEESS-SSTTEE---ES-TT-----S----S----TT-EEEEE--EES-------
T ss_pred EEEEECCCchHHHHHhccc-CceEEEeeccCCCCCEE---EecCc-----c---CcCC--CCceeEEE--EEhhhh----
Confidence 4899999999999988761 22455555555443100 00100 0 1222 25677643 445554
Q ss_pred CCCCcchhhhhhcccccCCceEEEeccHHHH---HHHHHHHhhccceEEEEee
Q 012709 388 HRCSTLDIFTEIDRILRPEGWVIIRDTARLI---ESARALTTRLKWDARVIEI 437 (458)
Q Consensus 388 ~~c~~~~~~~e~drilrp~g~~~~~d~~~~~---~~~~~~~~~~~w~~~~~~~ 437 (458)
+=+..+.+.|-.|||||||.++|-+-..-. +.--+.++++..+....|.
T Consensus 134 -GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 134 -GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred -CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 567779999999999999999996444333 3333556778888777653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0032 Score=60.27 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=47.3
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCCCCchhhhc----cccccccccccccCCCC--CCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTY--PRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~~~l~~~~~----rgl~g~~~~~~~~~~~y--p~t~dl~h~~~ 378 (458)
..|+|+|||+|.+++.|.+. . ..|..+-+.| ..+.++-+ -|+-.+---.+..+..+ ...||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 57999999999999877632 1 1333332222 22222111 12211111111122222 25799998654
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+.. +.-++-+.|+|||.+++-
T Consensus 154 ~~~~------------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGPD------------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Cccc------------chHHHHHhhCCCcEEEEE
Confidence 4332 334556689999999884
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=57.89 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=72.7
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCC-CCCchhhhcc-ccc------cc-cccccccCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDR-GFV------GV-LHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~-~~~l~~~~~r-gl~------g~-~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-++|+|+|||.|+++..|... .|- +.|+-++- +..+.++-+. ++. -+ ..|--+-+...|.+||+|=.+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 478999999999999888632 121 12222332 2333333222 111 11 122222233446789999655
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEE---eccHHHHHHHHHHHhhccceEEEEeeccCCCccEEEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~---~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
.|+.... ........++-++=++|+|||.+++ ......-..++.+.+...-.+.+...+..+ .-++++.|
T Consensus 144 -~~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~-N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGI-IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHG-NVAVFAFK 216 (262)
T ss_pred -CCCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCc-cEEEEEEC
Confidence 2332100 1112245788899999999999997 233223333444444443334444433222 56788876
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=56.48 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=73.1
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C-CCCCCeeEEEe
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YPSLSFDMLHC 114 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p-fp~~sFD~I~~ 114 (458)
..+..+|||+.++.|.-+.+++..-.....+++.|+++.-+...+++ |. .+.....|.... + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34556899999999999988887654456899999999877766544 54 444554565544 1 23346999995
Q ss_pred ----cccccccccc------------------HHHHHHHHHhcc----cCCcEEEEEeCC
Q 012709 115 ----ARCGVDWDQK------------------DGILLLEVDRVL----KPGGYFVWTSPL 148 (458)
Q Consensus 115 ----~~~l~~~~~~------------------~~~~L~ei~RvL----kPGG~liis~~~ 148 (458)
+.. -.+..+ ..++|+.+.+.+ ||||+++.++-.
T Consensus 163 DaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 321 111111 125888999999 999999999873
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0039 Score=60.13 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=61.2
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcccc---ccccccccccCCCCCCcccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-.+|+|+|||.|.++..|.+. .+.-...+|+-+|-. +.+..+.++.- +-....=++.++.-+.+||+|-++.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 468999999999998887521 010112356666654 55555544421 1111111233444457999999998887
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. .+. .+..+|-||-|++| |.+++.|
T Consensus 141 h~---~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HL---DDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cC---ChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 66 221 24568999999999 5555544
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0089 Score=60.62 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=65.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cc-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|+|+|||.|.++.+|... .|- .+|+-++-. ..+.++-+ .|+ |- +-.|+.+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999743 222 234445543 44443322 343 22 2235545443 35899998762
Q ss_pred cccc------------cccCC------CCCC-cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhc
Q 012709 379 LLSL------------ESGHR------HRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 428 (458)
Q Consensus 379 ~~~~------------~~~~~------~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~ 428 (458)
=+.. +.+.. +... +..++-+.-+.|+|||.+++--... ..++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1111 00000 0011 2367888999999999999853332 34566666543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.002 Score=54.30 Aligned_cols=96 Identities=17% Similarity=0.048 Sum_probs=39.9
Q ss_pred EEECCCCchhHHHHhhcCCcc--ceEEEEcCCH---HHHHHHHHcC--CCeEEEeeccCCC--CCCCCCeeEEEeccccc
Q 012709 49 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERG--LPAMIGSFASKQL--PYPSLSFDMLHCARCGV 119 (458)
Q Consensus 49 LDVGCG~G~~~~~La~~~~~~--~~v~gvD~S~---~~i~~A~er~--~~~~~~~~d~~~L--pfp~~sFD~I~~~~~l~ 119 (458)
||||+..|..+..+++.-.+. .+++++|..+ ..-+..++.+ .++.+..++.... .++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 689999998888887642222 2689999998 3444444332 3577777765432 23357899999753 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
|-.......+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222234467889999999999998743
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.024 Score=53.28 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=68.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+.|+|+|+|.++...+... -+|++++.++.-.+.|.++ ..++.+..+|+....| ...|+|+|-.. -.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEml-DT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEML-DT 107 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHh-hH
Confidence 589999999999998877653 3899999999999999887 2378889999888888 45799998521 11
Q ss_pred -c-cccHHHHHHHHHhcccCCcEEEE
Q 012709 121 -W-DQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 121 -~-~~~~~~~L~ei~RvLkPGG~lii 144 (458)
. ....-.++..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 1 11112566777777887777654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0052 Score=49.04 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=54.9
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh---cccc---cccc-ccccccCCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~---~rgl---~g~~-~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
+|+|+|||.|+++..+. ..+. .++.-.+.. +.+..+- +.+. +-.+ .|+.+.-..-+.+||++.++..+
T Consensus 1 ~ildig~G~G~~~~~~~--~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALA--SGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHh--cCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 48999999999999998 3221 122222322 1111111 1111 1112 22222211235689999988887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
... .=....++-.+.+.|||||++++.
T Consensus 77 ~~~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 652 113456778889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0045 Score=63.73 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=56.8
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccccccccccccCCCCCCccccccccccccc-
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL- 382 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~- 382 (458)
.|+|+|||.|.++++|..+....- |+-+|.. .-|..+ -+.|+-+.++ +...++.-+.+||+|-++--|-.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~---v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIR---LTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 599999999999999984322221 2222321 111111 1123322221 22233434678999998776632
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.. ...-....++-++-|.|+|||.++|-
T Consensus 275 ~~--~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 275 IQ--TSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cc--ccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 10 11123457889999999999999874
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.015 Score=58.33 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=69.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cc-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|+|+|||+|.++.+|..+.... +|+-++-. ..+.++-+ .|+ |- +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~---~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA---EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 479999999999999998432222 34444443 34443322 244 21 2234444443 24799988652
Q ss_pred cccc------c----c--------cCCCCCC-cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEE
Q 012709 379 LLSL------E----S--------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 379 ~~~~------~----~--------~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
=+.. . + .+.+... +..++-+.-+.|+|||++++.-.... ++++++.....|.-...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEF 272 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeee
Confidence 1110 0 0 0000111 24678888999999999998544433 67888877665544333
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.082 Score=54.88 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=89.0
Q ss_pred cccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCC---c--------------------
Q 012709 12 RSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL---L-------------------- 68 (458)
Q Consensus 12 ~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~---~-------------------- 68 (458)
.++-..+++.+..-+.++..+..+.+ ......++|==||+|.+....+-.+. |
T Consensus 163 kRGyR~~~g~ApLketLAaAil~lag----w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILLLAG----WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hccccccCCCCCchHHHHHHHHHHcC----CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 33445566667777777776665433 22336899999999999888765431 0
Q ss_pred --------cc-------eEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc---cccccc
Q 012709 69 --------TM-------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG---VDWDQK 124 (458)
Q Consensus 69 --------~~-------~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l---~~~~~~ 124 (458)
.. .++|+|+++.+++.|+.+ |+ .+.|.++|+..++-+-+.+|+|+|+--. +.-...
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~ 318 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhh
Confidence 01 277999999999999887 44 4788999998886444789999998321 110111
Q ss_pred HH----HHHHHHHhcccCCcEEEEEeC
Q 012709 125 DG----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 125 ~~----~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ .+.+.+.+.++--+++++++.
T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 12 344456677777788888875
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.024 Score=56.75 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=80.9
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccc---ccccccccccCCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
+|+|||||+|.-|.+|..... . .+|+-+|-+ .-|.++ -.-|+ .-+..||=++. +.+||+|=++==.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-D--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-C--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeCCCC
Confidence 999999999999999984322 2 355555543 444443 22343 23333554444 4488886433111
Q ss_pred -------------------cccccCCCCCCcc---hhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeec
Q 012709 381 -------------------SLESGHRHRCSTL---DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE 438 (458)
Q Consensus 381 -------------------~~~~~~~~~c~~~---~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~ 438 (458)
..+ ....+++ .++-+..++|+|||++++.-...--+.|+++.....+-..+....
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~---~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALV---GGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred CCCcccccChhhhccCHHHHHc---cCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEe
Confidence 011 1123332 778889999999999999877777889999999888521122222
Q ss_pred c-CCCccEEEEEe
Q 012709 439 S-NSDERLLICQK 450 (458)
Q Consensus 439 ~-~~~~~~~~~~k 450 (458)
+ .+.+++.++++
T Consensus 264 d~~g~~rv~~~~~ 276 (280)
T COG2890 264 DLFGRDRVVLAKL 276 (280)
T ss_pred cCCCceEEEEEEe
Confidence 2 33466666554
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.014 Score=57.28 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=69.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCCC
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRH 388 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~ 388 (458)
.|-|||||-+-.|..- ..+|-.|-+|+++..-+.-=|-. .|-=.+|-|++ -.++|+.
T Consensus 183 vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm~~-------------vPl~d~svDva--V~CLSLM----- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDMRN-------------VPLEDESVDVA--VFCLSLM----- 239 (325)
T ss_pred EEEecccchhhhhhcc---ccceeeeeeecCCCceeeccccC-------------CcCccCcccEE--EeeHhhh-----
Confidence 6899999999887632 46788888888776422111100 12223677764 3556655
Q ss_pred CCCcchhhhhhcccccCCceEEEeccHHHHHHHHHH---HhhccceEEEEe
Q 012709 389 RCSTLDIFTEIDRILRPEGWVIIRDTARLIESARAL---TTRLKWDARVIE 436 (458)
Q Consensus 389 ~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~---~~~~~w~~~~~~ 436 (458)
.-++.+.+.|..|||+|||.++|-+-..-...++.+ ++.|..++...+
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 667889999999999999999996544443333333 566777766554
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.32 Score=46.40 Aligned_cols=157 Identities=13% Similarity=0.056 Sum_probs=93.0
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHH----HHHHHHcCCCe
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPA 92 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~----i~~A~er~~~~ 92 (458)
.|...+.+-..++..+......++ -.+..+||=+|+.+|....+++.-- ....+.+++.|+.+ +..|.+|. ++
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni 126 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NI 126 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-Cc
Confidence 444445555666666654443333 3345799999999999999998753 35679999999865 45566653 33
Q ss_pred EEEeeccCCCC---CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHH
Q 012709 93 MIGSFASKQLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169 (458)
Q Consensus 93 ~~~~~d~~~Lp---fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~ 169 (458)
.-...|+.... .-=+..|+|++- + .-++..+.+..++...||+||+++++-....-.. +.+-.+.+++-.+
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~D-V--AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv---T~dp~~vf~~ev~ 200 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQD-V--AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV---TADPEEVFKDEVE 200 (231)
T ss_pred eeeecccCCcHHhhhhcccccEEEEe-c--CCchHHHHHHHHHHHhcccCCeEEEEEEeecccc---cCCHHHHHHHHHH
Confidence 33334433210 111468999865 2 1222234677889999999998888765332211 1222333443334
Q ss_pred HHHhhccEEEEee
Q 012709 170 FVENLCWELVSQQ 182 (458)
Q Consensus 170 l~~~~~w~~v~~~ 182 (458)
-+...+|+.+.+-
T Consensus 201 kL~~~~f~i~e~~ 213 (231)
T COG1889 201 KLEEGGFEILEVV 213 (231)
T ss_pred HHHhcCceeeEEe
Confidence 4455567666543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=49.31 Aligned_cols=141 Identities=16% Similarity=0.049 Sum_probs=79.5
Q ss_pred ccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHH----------HHHHHHHcC-CCeEEEeeccCCCC------
Q 012709 41 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERG-LPAMIGSFASKQLP------ 103 (458)
Q Consensus 41 ~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~----------~i~~A~er~-~~~~~~~~d~~~Lp------ 103 (458)
......+|+|+=-|.|.+++-++..-.+...|++.=..+. +-..+++.. .+..........++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 3445679999999999999999876445556666544332 112222221 12222222222232
Q ss_pred -CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH--HHHHHHHHHHHhhccEEEE
Q 012709 104 -YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ--KRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 104 -fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~--~~w~~i~~l~~~~~w~~v~ 180 (458)
.+..++|.++.+.. +| ...-.++..++++.|||||.+++.++....-....+.... ..-..+.+..+..+|++..
T Consensus 125 ~~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 125 LVPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 12234444443332 33 3344589999999999999999999765432222221111 1124456667778888877
Q ss_pred eee
Q 012709 181 QQD 183 (458)
Q Consensus 181 ~~~ 183 (458)
+..
T Consensus 203 eS~ 205 (238)
T COG4798 203 ESE 205 (238)
T ss_pred eeh
Confidence 654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.024 Score=52.42 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=66.8
Q ss_pred ceeEEeeccccchhhhhhhhccC---CCeEEEEeecCCCCCCchhhhccccc---cccccccccCCCCCCcccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~---~~~~~m~v~~~~~~~~l~~~~~rgl~---g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
+-.+|+|+||+.|||..+++++. ..|+-+-+.|.+....+..+ +|=+ .....-.+.++.=...+|+|-++..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceeccccc
Confidence 56999999999999999999544 22444444444322222222 2211 1111222222211257999998885
Q ss_pred ccccccCCCCCC--cchhh---hhhcccccCCceEEEe-----ccHHHHHHHHHHHhhccceEEEEeecc---CCCccEE
Q 012709 380 LSLESGHRHRCS--TLDIF---TEIDRILRPEGWVIIR-----DTARLIESARALTTRLKWDARVIEIES---NSDERLL 446 (458)
Q Consensus 380 ~~~~~~~~~~c~--~~~~~---~e~drilrp~g~~~~~-----d~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~~ 446 (458)
+..-........ +..++ .=+-..|+|||.+|+. +..+++..++..-+ ++.+++... .+.|.-+
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~----~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFS----KVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHH----HEEEEE-TTSBTTCBEEEE
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCe----EEEEEECcCCCCCccEEEE
Confidence 543200000011 11112 2223559999988873 22355555555333 355665543 3358888
Q ss_pred EEEe
Q 012709 447 ICQK 450 (458)
Q Consensus 447 ~~~k 450 (458)
||.+
T Consensus 177 v~~~ 180 (181)
T PF01728_consen 177 VCRG 180 (181)
T ss_dssp ESEE
T ss_pred EEcC
Confidence 8864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0098 Score=50.56 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=51.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccc--ccc-cc--ccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GVL-HD--WCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~--g~~-~~--~~~~~~~yp~t~dl~h~~ 377 (458)
.+|+|+|||.|.++..+..+.... +|+-+|-. ..+..+ -..|+- -+. .| ++.+ .-+.+||.+=..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNG---RVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCc---eEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEEC
Confidence 489999999999999997432222 33333432 222221 112221 111 11 2222 223578887543
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+..+ .+..++=++-|.|+|||++++.
T Consensus 96 ~~~~---------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGG---------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccch---------hHHHHHHHHHHHcCCCCEEEEE
Confidence 3222 2346888999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0074 Score=58.63 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=74.3
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccc--------cCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCE--------AFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~--------~~~~yp~t~dl~h~~ 377 (458)
=|.+.|.|||.| +||..++.- -=+|+-+|-. .+|.++ .-+.--+||.=-. ++..=+.+-|||-|.
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~----~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEH----YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCC-cchHHHHHh----hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 379999999999 777765421 1167777776 777743 3344444444333 333336788887754
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCc-eEE---EeccHHHHHHHHHHHhhccce
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEG-WVI---IRDTARLIESARALTTRLKWD 431 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g-~~~---~~d~~~~~~~~~~~~~~~~w~ 431 (458)
.+| |=|+++..+=++-|+|||.| .+. .+|+.-..-++.++..+++|+
T Consensus 108 qa~-------HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAV-------HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhH-------HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 443 24788899999999999999 322 265555566777777777775
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0088 Score=59.75 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=69.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch----hhhccccc----cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~----~~~~rgl~----g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
=+|||+|||-|+++-.+.++ ..|=|..|.-.. +++. -|-++||- =..+||-..=. .||=|=+-|.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~-y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~fDrIvSvgm 146 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEE-YGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----PFDRIVSVGM 146 (283)
T ss_pred CEEEEeCCChhHHHHHHHHH-cCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccccccc----ccceeeehhh
Confidence 47999999999999888742 367666554443 4443 37779996 44677765433 3888888888
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
|.... .-+..+.+-=+.++|+|||-+++.
T Consensus 147 fEhvg----~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 147 FEHVG----KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HHHhC----cccHHHHHHHHHhhcCCCceEEEE
Confidence 88762 456778888899999999999973
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.012 Score=56.26 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=58.0
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccCCCCCCcccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-.+|||+|||.|.|+.+|..... .|+-++.. +-+..+-++ |+-..++-....++.-+.+||+|.+..+|.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 36899999999999999983322 23333432 333433322 221111111222444457899999888886
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
.+. .-.+..++-++-|++++++.+.+...
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 551 23456777788888766666555443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.011 Score=56.26 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=47.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCC--Cccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYP--RTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp--~t~dl~h~~~ 378 (458)
-.|||+|||+|.+++.|.+... .|+-++.. +-+..+-+ -|+ +-+.+. ..+.++| .+||+|..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEcc
Confidence 4799999999999987763322 23323322 22222221 133 111111 1122232 5799998665
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+..+ .-++-+.|+|||.+++-
T Consensus 153 ~~~~~------------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 153 AAPEI------------PRALLEQLKEGGILVAP 174 (212)
T ss_pred Cchhh------------hHHHHHhcCCCcEEEEE
Confidence 44332 33456899999999874
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.095 Score=53.89 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=73.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------CCCeEEEeeccCCC-CCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQL-PYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~~~~~~~~~d~~~L-pfp~~sF 109 (458)
.+.++||=+|-|.|.-.+.|.+.- ...+|+-+|..+.|++.+++. ..++.+...|+.+. .-..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 456799999999999999999752 257999999999999999844 23455555554332 2234589
Q ss_pred eEEEeccccccccccH-----HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 DMLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~-----~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+|+.-.- -+-+... .++..-+.|.|+++|.+++....+
T Consensus 367 D~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 99985421 1111111 246677889999999999987644
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.0085 Score=56.22 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=51.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCC-CCccccccccccccccccC
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~y-p~t~dl~h~~~~~~~~~~~ 386 (458)
+|+|+|||.|.++.+|.+. ..+ +++-++.. ..+..+.++|+--+..|..+.++.+ +.+||+|-+++.|...
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~--- 88 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT--- 88 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC---
Confidence 6999999999999998732 222 12222322 3344444566432333433323323 4699999998888655
Q ss_pred CCCCCcchhhhhhcccccC
Q 012709 387 RHRCSTLDIFTEIDRILRP 405 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp 405 (458)
. +...+|-||-|++++
T Consensus 89 ~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 89 R---NPEEILDEMLRVGRH 104 (194)
T ss_pred c---CHHHHHHHHHHhCCe
Confidence 2 245567777666554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.0038 Score=60.18 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=90.0
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccc-cccccccccCC--CCCCcccccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFV-GVLHDWCEAFP--TYPRTYDLVHAEGLLS 381 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~-g~~~~~~~~~~--~yp~t~dl~h~~~~~~ 381 (458)
.+|.++|.|||+|=++-+|..+-+ -+.=++-+ |-|-.+.|+|+- -.||-=-..|. .-+.-+|||-|..+|+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~-----~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD-----RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh-----hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 589999999999999999973311 12233434 888899999972 22222122254 5578999999999998
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEe-e----ccC
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIE-I----ESN 440 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~-~----~~~ 440 (458)
-+ -.++.++.=..+.|.|||.|+++-+. .--..|..++.+---++..+. + +.+
T Consensus 200 Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g 273 (287)
T COG4976 200 YL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAG 273 (287)
T ss_pred hh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcC
Confidence 66 46788999999999999999985111 012456677666666644432 1 112
Q ss_pred C--CccEEEEEec
Q 012709 441 S--DERLLICQKP 451 (458)
Q Consensus 441 ~--~~~~~~~~k~ 451 (458)
. ...+.|++|+
T Consensus 274 ~pv~G~L~iark~ 286 (287)
T COG4976 274 EPVPGILVIARKK 286 (287)
T ss_pred CCCCCceEEEecC
Confidence 2 2556666664
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.076 Score=52.09 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+.+.+|+|||||.=-++....... +...++|+|++..++++...- +.+......|...-+ +....|+.+..-+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~- 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT- 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--
T ss_pred CCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-
Confidence 346899999999999998887653 456999999999999876544 667777777655543 4467999997654
Q ss_pred ccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHH-HHHHHHHHHhhccEEEE
Q 012709 119 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKR-WNFVRDFVENLCWELVS 180 (458)
Q Consensus 119 ~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~-w~~i~~l~~~~~w~~v~ 180 (458)
++..+.. ...-.++...++ .=.+++|.|-..- +. +..-..+. -..++.++..-+|..-.
T Consensus 181 lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL-~g-R~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL-GG-RNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHhcchHHHHHHHhC-CCeEEEecccccc-cc-CccccccCHHHHHHHhcccCCceeee
Confidence 3322111 112122222222 1245556553321 11 11222222 35678888888887443
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=46.23 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=60.6
Q ss_pred eEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC--CCCCCeeEEEecccccccc-----ccHH---HHHHHHHh
Q 012709 71 CIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDWD-----QKDG---ILLLEVDR 134 (458)
Q Consensus 71 ~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~l~~~~-----~~~~---~~L~ei~R 134 (458)
+|.+.|+.+++++.++++ + .++.+...+-+.+. .+.+.+|+|+-+...++-. ..+. .+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 488999999999988877 2 25777776655553 2335899999885544422 1222 68899999
Q ss_pred cccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhh
Q 012709 135 VLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENL 174 (458)
Q Consensus 135 vLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 174 (458)
+|+|||.+.++..... +...+..+.+.+.++.+
T Consensus 81 lL~~gG~i~iv~Y~GH-------~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGH-------PGGKEESEAVEEFLASL 113 (140)
T ss_dssp HEEEEEEEEEEE--ST-------CHHHHHHHHHHHHHHTS
T ss_pred hhccCCEEEEEEeCCC-------CCCHHHHHHHHHHHHhC
Confidence 9999999999886332 22334445566665543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.016 Score=54.92 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=71.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC--CCchhhhccccccccccccccCCC-----CCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCEAFPT-----YPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~--~~l~~~~~rgl~g~~~~~~~~~~~-----yp~t~dl~h~~~~~ 380 (458)
..++|+|||.|.|..++..+..+.-.+-|=+.... ..+.-+..+||-.+.--.|.+... -|.+.|.||. .|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i--~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI--NF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--ES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--eC
Confidence 38999999999999999765555443333322221 344456667773333333333220 1457777662 22
Q ss_pred c-ccccC--CCCCCcc-hhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhc--cceEE
Q 012709 381 S-LESGH--RHRCSTL-DIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL--KWDAR 433 (458)
Q Consensus 381 ~-~~~~~--~~~c~~~-~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~--~w~~~ 433 (458)
. .|-.+ .+|.-+. ..|-++-|+|+|||.+.++ |..+..+.+.+.+... .++..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 22111 1244443 7788999999999999985 6777777777777775 44433
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.028 Score=59.92 Aligned_cols=69 Identities=26% Similarity=0.313 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEE
Q 012709 21 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIG 95 (458)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~ 95 (458)
++.++..+.+.... .....+||+-||||.++..+++.. .+|+|++++++.++.|+++ |+ ++.|+
T Consensus 368 aevLys~i~e~~~l--------~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi 436 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGL--------PADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFI 436 (534)
T ss_pred HHHHHHHHHHHhCC--------CCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeee
Confidence 35555555555543 333689999999999999998853 3899999999999999876 33 56777
Q ss_pred eeccC
Q 012709 96 SFASK 100 (458)
Q Consensus 96 ~~d~~ 100 (458)
++-++
T Consensus 437 ~gqaE 441 (534)
T KOG2187|consen 437 VGQAE 441 (534)
T ss_pred ecchh
Confidence 76433
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.063 Score=51.08 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 87 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e 87 (458)
-.+.|||||.|.+...|+.. +|..-+.|.++-...-+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHH
Confidence 36899999999999999986 477789999986654444433
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.014 Score=55.66 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=61.3
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccccccccccCCCCCCcccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-.+|+|+|||.|.|+..|. +... .|+-+|.. +.+..+.+|. +..-..=.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la--~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELA--KRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHH--HCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 3689999999999999998 4432 33444433 4555544432 10000111122222347899987777665
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+ ....+..++-++.|+++|++++.+....
T Consensus 131 ~~----~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 131 HY----PASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred hC----CHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 44 1344667899999999998888875443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.011 Score=56.21 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=59.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-cccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-..|||+|||.|.+..+|.+.-... +++-++-. +.+..+-++-- +.+ -.|..++|+ +.+||+|-+.+++.++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~---~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFK---HIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 3579999999999999997320111 34444433 44444433210 111 223334454 4799999999999876
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. .-.+..++-||-|++ +++++|-
T Consensus 119 ---~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 ---N-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ---C-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 2 235667889999998 5677773
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.1 Score=53.61 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=70.0
Q ss_pred cCCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 42 LAGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 42 ~~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+.++|+=+|+| .|..+..+++.- ..+|+++|.+++-.+.|++-|....+...+.....--.+.||+|+..-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv---- 237 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV---- 237 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC----
Confidence 3456788888888 447777777732 259999999999999999988765555333333222123499999652
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. ...+....+.||+||.+++...+
T Consensus 238 ---~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 ---G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 34688899999999999999875
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.014 Score=53.70 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=65.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||+|-.+.+|..+... .. |+-+|-. +-+..+.+ -|+ --+.+|+.++++ +..||+|=++-=
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~-~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPD-AK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTC-EE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CeEEEecCChHHHHHHHHHhCCC-CE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 67999999999999888754333 22 2222322 33332221 222 234567777666 589999875543
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEE--EeccHHHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI--IRDTARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~--~~d~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
|..-.. .....+..++-+-=++|+|||.++ ++.....-..++++.. ++.+..
T Consensus 108 ~~~~~~-~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~~ 161 (170)
T PF05175_consen 108 FHAGGD-DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVVA 161 (170)
T ss_dssp SBTTSH-CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEEE
T ss_pred hhcccc-cchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEEE
Confidence 221100 011235678889999999999874 4444433333444333 555543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=52.23 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---C--C--CeEE
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--L--PAMI 94 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~--~--~~~~ 94 (458)
..|++-+++.+...... ....-++||||+|....-..|..+- ..++++|+|+++..++.|+++ + + .+.+
T Consensus 83 ~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred HHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 45666666666543221 1124589999999887666665442 256999999999999999875 2 2 3444
Q ss_pred EeeccC-C----CCCCCCCeeEEEecccccc
Q 012709 95 GSFASK-Q----LPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 95 ~~~d~~-~----Lpfp~~sFD~I~~~~~l~~ 120 (458)
...... . +-.+++.||+..|+--++.
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEcCCccccchhhhcccceeeEEecCCcccc
Confidence 433211 1 1223468999999865444
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.029 Score=56.62 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=62.3
Q ss_pred eEEeeccccchhh--hhhhhccCC-CeEEEEeecCCCCCCchhhhccccccccc-cccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGF--NSALLEKGK-SVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~f--aa~l~~~~~-~~~~m~v~~~~~~~~l~~~~~rgl~g~~~-~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||+|-. ||+++ +- .|.-.-+=|..-.++..-+-.-|+-.-+. .-.+.+.. ..||+|=|+=+...+
T Consensus 163 ~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVL 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHH
T ss_pred CEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHH
Confidence 5999999999954 56665 33 34333222211111111122223311110 01233333 689999876665544
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEEeeccCCCccEEEEEec
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
..++=++.+.|+|||++|++--. +-.+.|.+..+. .|++.-...+ ++=-.|+++|+
T Consensus 239 ---------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~--~~W~~l~~~Kk 295 (295)
T PF06325_consen 239 ---------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE--GEWVALVFKKK 295 (295)
T ss_dssp ---------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE--TTEEEEEEEE-
T ss_pred ---------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE--CCEEEEEEEeC
Confidence 23566789999999999985211 112444555555 6665444322 11234555553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.043 Score=51.51 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=28.1
Q ss_pred CcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhcc
Q 012709 391 STLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLK 429 (458)
Q Consensus 391 ~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~ 429 (458)
.+..++-++-|+|+|||++++-.. .+.+.++.+..+.+.
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 467889999999999999998643 334455555565553
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.25 Score=50.66 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCcc-ceEEEEcCCHHHHHHHHH--cCCCe-----EEEeeccCCCCCCC-CCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLT-MCIANYEASGSQVQLTLE--RGLPA-----MIGSFASKQLPYPS-LSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~-~~v~gvD~S~~~i~~A~e--r~~~~-----~~~~~d~~~Lpfp~-~sFD~I~ 113 (458)
-.+++|||+|.|.|.-...+-.- +|. -+++-++.|+..-..... .++.. .-.......++++. ..|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i-~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDI-WPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhccc-CCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhh
Confidence 45678999999999766555432 333 345667777765443321 11111 11111123444432 5688887
Q ss_pred ecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...-+.+.... ..-.++.+..++.|||.|++.+++.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 76555554321 1247888899999999999999744
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.46 Score=46.47 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=84.8
Q ss_pred ccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH----HHHHHHHHcCC
Q 012709 15 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGL 90 (458)
Q Consensus 15 ~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~----~~i~~A~er~~ 90 (458)
...|.....+...++.-+.-..+.+.... ..+||=+|+++|....+..+---+...|++++.|+ +.+..|.+|-
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihikp-GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt- 205 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHIKP-GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT- 205 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceeecC-CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-
Confidence 34465567777777777765555554433 35999999999999988887655677899999886 4567777663
Q ss_pred CeEEEeeccCCC---CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 91 PAMIGSFASKQL---PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 91 ~~~~~~~d~~~L---pfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.-+.-|+... -+.-.-.|+|++- + .-++....+..++.-.||+||.|+++....
T Consensus 206 NiiPIiEDArhP~KYRmlVgmVDvIFaD-v--aqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYRMLVGMVDVIFAD-V--AQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred CceeeeccCCCchheeeeeeeEEEEecc-C--CCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 333333333221 0112357887754 2 112222356668889999999999987544
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.41 Score=45.16 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=61.7
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEee-ccCC--------CCCCCCCeeEE
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF-ASKQ--------LPYPSLSFDML 112 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~-d~~~--------Lpfp~~sFD~I 112 (458)
-.+..+|||+||.+|+++....++.-|..-+.|+|+-.- .--.| +.+..+ |..+ ..+|+...|+|
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----EPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----cCCCC--cccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 344679999999999999999887657778999997431 11112 122222 2221 12467889999
Q ss_pred Eeccccccccc----cHH-------HHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQ----KDG-------ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~----~~~-------~~L~ei~RvLkPGG~liis~~ 147 (458)
++-. ...-+. |.. .+|.-....++|+|.|++-.+
T Consensus 141 lSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 141 LSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred Eecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 9742 232211 111 234444567889999999875
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.026 Score=56.91 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=59.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc------cc--ccccccccccCCCCCCcc----c-c
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF--VGVLHDWCEAFPTYPRTY----D-L 373 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r------gl--~g~~~~~~~~~~~yp~t~----d-l 373 (458)
.+|+|+|||.|.++..|++.-.. .-+|++.|-+ .-|..+.++ ++ .++..|.++.++ +|..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 57999999999999988843111 2367888876 566655543 22 344556665432 23333 2 3
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+...+.|... ..-....+|=++=+.|+|||.+++
T Consensus 142 ~~~gs~~~~~----~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNF----TPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEecccccCC----CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3333333332 122344689999999999999997
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.004 Score=51.87 Aligned_cols=94 Identities=23% Similarity=0.249 Sum_probs=53.4
Q ss_pred EeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----c-ccccccccccCCCCCCcccccccccc-ccc
Q 012709 310 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGL-LSL 382 (458)
Q Consensus 310 ~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l-~g~~~~~~~~~~~yp~t~dl~h~~~~-~~~ 382 (458)
|||+|||.|....+|...-+.--...+.-+|-. ..|..+.++. + +-.++.=++.++..-.+||+|=++++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999843100001244444433 5555554444 2 11111111223333458999998766 554
Q ss_pred cccCCCCCCcchhhhhhcccccCCc
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEG 407 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g 407 (458)
+ ..=.+..++=++=|+|||||
T Consensus 81 ~----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 L----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp S----SHHHHHHHHHHHHHTEEEEE
T ss_pred C----CHHHHHHHHHHHHHHhCCCC
Confidence 3 34467788999999999998
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.034 Score=52.48 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=69.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCC-ccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPR-TYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~-t~dl~h~~~~~~~~~~~ 386 (458)
=.|||.|||.|.+-++|.+. +.|=..-|= ..+..+.-..+||+-=+-+|.-+-++.||- +||.+=.+.-+...+
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 46999999999999999953 666555442 123556778899998888899888888876 999998777776652
Q ss_pred CCCCCcchhhhhhcccccCCceEEEe
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.-+.+|-||= |=|.-+|+.
T Consensus 90 ----~P~~vL~Eml---RVgr~~IVs 108 (193)
T PF07021_consen 90 ----RPDEVLEEML---RVGRRAIVS 108 (193)
T ss_pred ----HHHHHHHHHH---HhcCeEEEE
Confidence 2457899994 556677763
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.29 Score=51.22 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=73.7
Q ss_pred ccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC---CCCCCeeEE
Q 012709 41 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDML 112 (458)
Q Consensus 41 ~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp---fp~~sFD~I 112 (458)
.++...||||..|-+|.=+.+++..-.-+..|++.|.+.+-+.....+ |+ +..+...|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 345567999999999966666654322345799999998877655443 55 4555666766554 554 89999
Q ss_pred E----eccccccc-----------------cccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 113 H----CARCGVDW-----------------DQKDGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 113 ~----~~~~l~~~-----------------~~~~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
. |+..-.-. ..-..++|..+..+++|||+|+.++-.+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 8 45410110 11113688889999999999999987553
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.051 Score=53.59 Aligned_cols=88 Identities=25% Similarity=0.506 Sum_probs=60.9
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch-hhhcccc--ccccccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~-~~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..++||+|||-|+--+.|...=+ .|.-++.+-+.. ---+||+ ++. .+|-+. +..||+|-|-+|++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~-----~v~aTE~S~~Mr~rL~~kg~~vl~~-~~w~~~----~~~fDvIscLNvLD-- 162 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK-----EVYATEASPPMRWRLSKKGFTVLDI-DDWQQT----DFKFDVISCLNVLD-- 162 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc-----eEEeecCCHHHHHHHHhCCCeEEeh-hhhhcc----CCceEEEeehhhhh--
Confidence 46899999999999888862111 344444432222 2345886 333 347643 46799999888765
Q ss_pred ccCCCCCCcc-hhhhhhcccccCCceEEE
Q 012709 384 SGHRHRCSTL-DIFTEIDRILRPEGWVII 411 (458)
Q Consensus 384 ~~~~~~c~~~-~~~~e~drilrp~g~~~~ 411 (458)
||.-. .+|=+|-+-|+|+|.+|+
T Consensus 163 -----Rc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 163 -----RCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred -----ccCCHHHHHHHHHHHhCCCCEEEE
Confidence 88866 677789999999999997
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.061 Score=51.65 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=26.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPT 339 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~ 339 (458)
..|||.|||.|-.|..|.+++..|.-+=++|.
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence 58999999999999999977777777766555
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.15 Score=49.54 Aligned_cols=107 Identities=26% Similarity=0.458 Sum_probs=57.8
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCCCCchh---------hhccccccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPM---------ILDRGFVGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~~~l~~---------~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
++|||+|||.|+|+-.|.+.. +.|..+=+.+ ++|-- .|+.-=|- +-+|-+-.+.++ ++|+.-++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~----~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~-~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY----NQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFA-TFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH----HHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCce-eeeEEEee
Confidence 689999999999999998431 1233332222 23321 12221122 335555433333 45544322
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEE-------------------EeccH---HHHHHHHHHHhhccceEEEE
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVI-------------------IRDTA---RLIESARALTTRLKWDARVI 435 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~-------------------~~d~~---~~~~~~~~~~~~~~w~~~~~ 435 (458)
+..+|-.|.+.|+| |.+| ++|.. .+++++...+.++.|++.-.
T Consensus 151 --------------~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 --------------LISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred --------------hHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 11245566666666 5555 35543 44677777788888886554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.15 Score=53.99 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh---cc-cccccc----cccccc-CCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GFVGVL----HDWCEA-FPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~---~r-gl~g~~----~~~~~~-~~~yp~t~dl~h~~ 377 (458)
.+|+||+||.||++.+|.+.-.+- .|+-.|-. ..|..+- +| |+-... .|..+. +..-+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~---~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQA---QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCC---eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 489999999999998887431111 23333332 3333322 22 431001 121111 10123579999754
Q ss_pred ------ccccccccCCCCC----C-------cchhhhhhcccccCCceEEEe-------ccHHHHHHH
Q 012709 378 ------GLLSLESGHRHRC----S-------TLDIFTEIDRILRPEGWVIIR-------DTARLIESA 421 (458)
Q Consensus 378 ------~~~~~~~~~~~~c----~-------~~~~~~e~drilrp~g~~~~~-------d~~~~~~~~ 421 (458)
|++..- +...-+ . -..+|-+.=|+|||||.+++. ++.+++++.
T Consensus 317 aPcSg~G~~~~~-p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 317 APCSATGVIRRH-PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred CCCCCCcccccC-cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 343321 000000 0 136888999999999999985 555555444
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.7 Score=41.93 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=77.9
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCC-CCCeeEEEeccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP-SLSFDMLHCARCGV 119 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~ 119 (458)
++.||||-.|.+..+|.+.+ +...+++.|+++..++.|.++ +. .+....+|. -.++. +..+|+|+.+.+--
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 49999999999999999976 567899999999999988765 22 344444544 22333 34799998765411
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. -....|.+-...|+.==++++.-. . . -..+++.+....|....+.
T Consensus 97 ~---lI~~ILee~~~~l~~~~rlILQPn-~-------~------~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 T---LIREILEEGKEKLKGVERLILQPN-I-------H------TYELREWLSANSYEIKAET 142 (226)
T ss_pred H---HHHHHHHHhhhhhcCcceEEECCC-C-------C------HHHHHHHHHhCCceeeeee
Confidence 1 123466666666664445665421 1 0 1247788888899888765
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.023 Score=48.11 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=54.0
Q ss_pred EEeeccccchhhhhhhhccC-CCeEEEEeecCCCCCCchhhh----ccc-------cccccccccccCCCCCCccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMIL----DRG-------FVGVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~~~l~~~~----~rg-------l~g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
.|||++||.|.|+.++.+.. ..+..+=+-|. .+.+.- ..| ..|-+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~----~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPE----AVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHH----HHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHH----HHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998543 22222211111 111100 011 13333344444554 78999988
Q ss_pred cccccccccC--CCCCCcchhhhhhcccccCCceEEE
Q 012709 377 EGLLSLESGH--RHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 377 ~~~~~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+--|...... ..+=....++-++.|+|||||.+++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8777643100 0111344778899999999999876
|
... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.077 Score=55.40 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=52.4
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHH---HHHHHHHcCCCeE-EEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGS---QVQLTLERGLPAM-IGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~---~i~~A~er~~~~~-~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
+||=++=..|.++..|+..+. . .+ .|.--. ..+-+..++.+.. +...+. ..++| +.+|+|+. .++
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~-~-~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~-----~~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP-Y-SI--GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLI-----KVP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC-C-ee--ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEE-----EeC
Confidence 789999999999999986442 1 12 332211 1122333455433 222222 22344 45898874 344
Q ss_pred ccH---HHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKD---GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~---~~~L~ei~RvLkPGG~liis~~ 147 (458)
..- +..|..+.++|.||+.++..+.
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 332 3567888899999999876653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.14 Score=49.93 Aligned_cols=70 Identities=9% Similarity=0.239 Sum_probs=42.0
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-------------H----HHHHHHHHH----Hhh
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------------A----RLIESARAL----TTR 427 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-------------~----~~~~~~~~~----~~~ 427 (458)
.+||+|..+.-=..| ..++-++=|.|||||.+++.+. . .....++++ ...
T Consensus 143 ~~fD~VfiDa~k~~y---------~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~ 213 (234)
T PLN02781 143 PEFDFAFVDADKPNY---------VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASD 213 (234)
T ss_pred CCCCEEEECCCHHHH---------HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhC
Confidence 589999865433333 3456666799999999996321 0 122334343 444
Q ss_pred ccceEEEEeeccCCCccEEEEEec
Q 012709 428 LKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 428 ~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
=++++.+...- ++++|+.|.
T Consensus 214 ~~~~~~~lp~g----dG~~i~~k~ 233 (234)
T PLN02781 214 PRVEISQISIG----DGVTLCRRL 233 (234)
T ss_pred CCeEEEEEEeC----CccEEEEEe
Confidence 45666665432 678888875
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.079 Score=53.06 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=67.5
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc------ccc-----ccc-cccccccCCCCCCccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD------RGF-----VGV-LHDWCEAFPTYPRTYD 372 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~------rgl-----~g~-~~~~~~~~~~yp~t~d 372 (458)
-++|||+|||.|+.+..++ +. ++- +|+-++-. ..+.++-+ .|+ +-+ ..|-.+-..+-+.+||
T Consensus 77 p~~VL~iG~G~G~~~~~~l--~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVL--KHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCEEEEEecCchHHHHHHH--cCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 5899999999999999888 54 333 22222221 22222211 011 111 1111111122346899
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEeec--c--CCCc
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE--S--NSDE 443 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~~--~--~~~~ 443 (458)
+|=.+ ++..+.. ...--...++-++-|+|+|||.++++-. .+.+..+.+.+++.--.+...... . ++.-
T Consensus 153 vIi~D-~~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w 230 (283)
T PRK00811 153 VIIVD-STDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLW 230 (283)
T ss_pred EEEEC-CCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchh
Confidence 98643 2222200 0000013456688999999999998522 233344444444443344443321 1 1223
Q ss_pred cEEEEEe
Q 012709 444 RLLICQK 450 (458)
Q Consensus 444 ~~~~~~k 450 (458)
.+++|.|
T Consensus 231 ~f~~as~ 237 (283)
T PRK00811 231 SFTFASK 237 (283)
T ss_pred eeEEeec
Confidence 4677766
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.072 Score=54.40 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=59.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccccc--c-cccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g--~-~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||.+||+|+|+..+...... |+-.|.. ..+..+ -.-|+-. + ..|-. .++.-+.+||+|=++--
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~-----v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAK-----VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPP 257 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCe-----EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCC
Confidence 47999999999996544311332 3323332 222211 1124322 1 12221 12322358898876533
Q ss_pred ccc---cccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccc
Q 012709 380 LSL---ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 430 (458)
Q Consensus 380 ~~~---~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w 430 (458)
|.. ............+|-|+-|+|+|||++++--... ..++++++.--|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321 1000001224688999999999999987643221 244456666666
|
This family is found exclusively in the Archaea. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.44 Score=46.88 Aligned_cols=125 Identities=13% Similarity=0.213 Sum_probs=77.7
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC----CCchh----hhccc--cccccccccccCCCCCCcccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPM----ILDRG--FVGVLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~----~~l~~----~~~rg--l~g~~~~~~~~~~~yp~t~dl~h 375 (458)
..+.|+|+|||.|.-+=+|..+..++=+.-| -.+.. .+-.+ .-+|- +=+=+..|+.++.. .+||+|=
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~V-Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGV-EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEE-EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEE
Confidence 3789999999999766666633222222211 11110 00011 11221 12233456666654 4788877
Q ss_pred ccccccccc------------cCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 376 AEGLLSLES------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 376 ~~~~~~~~~------------~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
++-=|=... .....|.+++++-=--++|+|||++.+=-..+.+.++-.++++++|...
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 664442210 1133577888888888999999999998888999999999999999844
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.19 Score=41.65 Aligned_cols=94 Identities=24% Similarity=0.323 Sum_probs=53.9
Q ss_pred Eeeccccchh--hhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----c---cccccccccc-cCCCCC-Ccccccccc
Q 012709 310 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G---FVGVLHDWCE-AFPTYP-RTYDLVHAE 377 (458)
Q Consensus 310 ~~d~~~~~g~--faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----g---l~g~~~~~~~-~~~~yp-~t~dl~h~~ 377 (458)
++|++||.|. +.+.+. .....+.. .+.. ..+.....+ + +-....+... .++.-. .+||++ ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~--~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLG--GRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhC--CCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 555555 33323333 2222 122221111 1 1223333333 133322 379998 55
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.....+ .. ...++-++-|+|+|+|.+++.+..
T Consensus 126 ~~~~~~---~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHL---LP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhc---CC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 555444 22 678899999999999999986544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.4 Score=51.52 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhc---CCccceEEEEcCCHHHHHHHHHc-----CCCeE
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER-----GLPAM 93 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er-----~~~~~ 93 (458)
+.|++.+...|..+...- .+....+|+=+|+|.|-+....++. .....++++++-+++++-....+ .-.+.
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vt 424 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeE
Confidence 556666555554432111 1222567899999999776654432 12345899999999988776655 34688
Q ss_pred EEeeccCCCCCCCCCeeEEEeccccccccccH--HHHHHHHHhcccCCcEEEEEe
Q 012709 94 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 94 ~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~--~~~L~ei~RvLkPGG~liis~ 146 (458)
++..|+..++-|..+.|++++= .+-.+-++. .+.|..+-+.|||.|..+=+.
T Consensus 425 ii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 425 IISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred EEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 8889999988666889999963 344444332 369999999999998776544
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.42 Score=47.39 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=67.2
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCC-CCchhhhcc-----c-----ccccc-ccccccCCCCCCcccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR-----G-----FVGVL-HDWCEAFPTYPRTYDL 373 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~-~~l~~~~~r-----g-----l~g~~-~~~~~~~~~yp~t~dl 373 (458)
-++||++|||.|+++..++ +.+ +- +|+-++-. +.+..+-+. | -+-+. .|-.+-....+++||+
T Consensus 73 p~~VL~iG~G~G~~~~~ll--~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVL--KHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHH--hCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 3689999999999998887 443 22 22222222 111111110 0 01111 1211111233678999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEeec----cCCCcc
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE----SNSDER 444 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~~----~~~~~~ 444 (458)
|=.+... .... ....-....+-.+-|+|+|||.+++.-. ...+..+.+.+++.=..+....+- .++.-.
T Consensus 149 Ii~D~~~-~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~ 226 (270)
T TIGR00417 149 IIVDSTD-PVGP-AETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWT 226 (270)
T ss_pred EEEeCCC-CCCc-ccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhE
Confidence 8655321 1200 0011123455678899999999998532 233444444444433334333221 122346
Q ss_pred EEEEEe
Q 012709 445 LLICQK 450 (458)
Q Consensus 445 ~~~~~k 450 (458)
+++|.|
T Consensus 227 ~~~as~ 232 (270)
T TIGR00417 227 FTIGSK 232 (270)
T ss_pred EEEEEC
Confidence 777777
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.19 Score=50.70 Aligned_cols=97 Identities=25% Similarity=0.366 Sum_probs=61.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccc-ccc-----ccCCCCCCccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWC-----EAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~-~~~-----~~~~~yp~t~dl~h~~~~~ 380 (458)
=|.|+|+|||-|-|.=.|..+ .+-.|+-+=|..- -.+|+-+-+-++|.-. -.. |..+. ..+||+|-+.|||
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 389999999999999888743 3334554544322 2333333333333111 011 22455 6899999999998
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
=+. | +-.+.|.++=..|||||-+|+.
T Consensus 193 YHr-----r-~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YHR-----R-SPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hcc-----C-CHHHHHHHHHHhhCCCCEEEEE
Confidence 644 2 3345688999999999999963
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.28 Score=50.97 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=68.7
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCC-CCchhhhc--------cc-c-----ccccccccccCCCCCCc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILD--------RG-F-----VGVLHDWCEAFPTYPRT 370 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~-~~l~~~~~--------rg-l-----~g~~~~~~~~~~~yp~t 370 (458)
-++||++|||.|+.+..++ ..+ += +|+-++-. .-+.++-+ +| + --++.|-.+-...-++.
T Consensus 151 PkrVLIIGgGdG~tlrelL--k~~~v~--~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 151 PKRVLILGGGDGLALREVL--KYETVL--HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCEEEEECCCHHHHHHHHH--hcCCCC--eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 5899999999999888887 433 22 22222221 22222221 11 1 00122222212233467
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----HHHHHHHHHHhhccceEEEEeec--c-CCC
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----RLIESARALTTRLKWDARVIEIE--S-NSD 442 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----~~~~~~~~~~~~~~w~~~~~~~~--~-~~~ 442 (458)
||+|=.+- .........+---...+-.+-|.|+|||.++++... ..+..+.+.++...-.+..+.+- . ++.
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 99988762 221100001111134667889999999999987542 22233444444444444433321 1 111
Q ss_pred ccEEEEEec
Q 012709 443 ERLLICQKP 451 (458)
Q Consensus 443 ~~~~~~~k~ 451 (458)
=.+.++.|.
T Consensus 306 WgF~~as~~ 314 (374)
T PRK01581 306 WGFHIAANS 314 (374)
T ss_pred eEEEEEeCC
Confidence 346666554
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.098 Score=50.44 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=65.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch-hhhcccccccc--------------ccccccCCCC---C-
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFVGVL--------------HDWCEAFPTY---P- 368 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~-~~~~rgl~g~~--------------~~~~~~~~~y---p- 368 (458)
..|||.|||.|--|..|.+++..|.-+=++|. -+. ..-++|+-... +-+|.-+..+ +
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~----Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL----AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHH----HHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 37999999999999999966555554433332 111 12345553211 1122212111 1
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE---e---cc---H---HHHHHHHHHHhhccceEEEEe
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---R---DT---A---RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~---~---d~---~---~~~~~~~~~~~~~~w~~~~~~ 436 (458)
-+||++-...+|..+ ....-..++-.|-++|+|||.+++ . +. + -..++++++.. =+|++....
T Consensus 115 ~~fd~v~D~~~~~~l----~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~ 189 (218)
T PRK13255 115 ADVDAVYDRAALIAL----PEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLE 189 (218)
T ss_pred CCeeEEEehHhHhhC----CHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEee
Confidence 256776655555543 122234678899999999996443 1 11 0 11345555543 238877665
Q ss_pred e
Q 012709 437 I 437 (458)
Q Consensus 437 ~ 437 (458)
.
T Consensus 190 ~ 190 (218)
T PRK13255 190 R 190 (218)
T ss_pred e
Confidence 3
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.2 Score=46.28 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=66.0
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC-C-----CC-CCCCeeEEEec
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-----PY-PSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~-L-----pf-p~~sFD~I~~~ 115 (458)
...+||.+|||. |..+..+++... ..+++++|.+++..+.+++.+. +.+....... + .+ ..+.+|+|+-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 446899999987 778888877531 2359999999999999988731 2222211111 0 12 22368999864
Q ss_pred ccc-------c-------cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCG-------V-------DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l-------~-------~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.. + +-..+....+.++.+.|+|+|.+++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 210 0 0112234588999999999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.79 Score=40.66 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
..++|+|||++-|..+.+.+-+|.. .|+++++++...+..++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHH
Confidence 4579999999999999999988865 899999999999988875
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.15 Score=49.70 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=62.7
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-cccccccccc----CCCCCCccccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEA----FPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~~~~~~~~----~~~yp~t~dl~h~~~~~~~ 382 (458)
.|||+|||-|.++-.|..++. +|.-+|.. ..+.++-.+.+ -|+.-+|-.. +-.==-+||.|=+..++.+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga-----~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA-----SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC-----eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 599999999999999985553 77777876 67777654444 2222222111 0000035777776666665
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+ -+...++-+..+.+||||.+.++.
T Consensus 137 v------~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 137 V------PDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred c------CCHHHHHHHHHHHcCCCcEEEEec
Confidence 5 234468999999999999999863
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.69 Score=45.01 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CC--C
Q 012709 19 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GL--P 91 (458)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~--~ 91 (458)
-+.+.|++.++++|....+.+. +..-++||||.|.-..--.+--+-+ +.+++|.|+++..++.|+.. +. .
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhh
Confidence 4567899999999987655443 3445899999887655444433221 45899999999988887654 11 1
Q ss_pred eEEEe-eccCCC-C---CCCCCeeEEEecccccc
Q 012709 92 AMIGS-FASKQL-P---YPSLSFDMLHCARCGVD 120 (458)
Q Consensus 92 ~~~~~-~d~~~L-p---fp~~sFD~I~~~~~l~~ 120 (458)
+++.. -+...+ + -..+.||++.|+--++.
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCCcch
Confidence 22221 111111 1 12478999999965443
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.58 Score=48.09 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhc---------------CCccceEEEEcCCHHHHHHH----------HHcCCCeEEE--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLT----------LERGLPAMIG-- 95 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~---------------~~~~~~v~gvD~S~~~i~~A----------~er~~~~~~~-- 95 (458)
.+.-+|+|+||..|..+..+.+. ..+..+|.-.|.-.+-.... .....++...
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999888776432 12335777788544221110 0111222222
Q ss_pred eeccCCCCCCCCCeeEEEecccccccccc-H-----------------------H---------------HHHHHHHhcc
Q 012709 96 SFASKQLPYPSLSFDMLHCARCGVDWDQK-D-----------------------G---------------ILLLEVDRVL 136 (458)
Q Consensus 96 ~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~-~-----------------------~---------------~~L~ei~RvL 136 (458)
-+....-=||+++.|+++|+.+ +||... | . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEech-hhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 1222222389999999999976 666321 1 1 2344445678
Q ss_pred cCCcEEEEEeCCCC
Q 012709 137 KPGGYFVWTSPLTN 150 (458)
Q Consensus 137 kPGG~liis~~~~~ 150 (458)
+|||+++++.....
T Consensus 174 v~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 174 VPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEE-S
T ss_pred ccCcEEEEEEeecc
Confidence 99999999987553
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.6 Score=43.09 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH--HHHHc--------CCCeEEEeeccCC---CCCCCCC-e
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ--LTLER--------GLPAMIGSFASKQ---LPYPSLS-F 109 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~--~A~er--------~~~~~~~~~d~~~---Lpfp~~s-F 109 (458)
...+||++|+|+|..+...+... ..++.-.|...-... ..++. |..+.+...+-.. ..+.... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 34579999999997666666532 347777887654332 22221 2233333322111 1111123 9
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|+++.|+++-. ..+.++.-+...|..+|.+++..+
T Consensus 164 DlilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cEEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999977644 556688888888999997767665
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.16 Score=51.86 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.7
Q ss_pred eEEeeccccchhhhhhhhc
Q 012709 308 RNVLDMNAHFGGFNSALLE 326 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~ 326 (458)
-.|+|+|||.|.+++.|.+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 4799999999999998873
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.27 Score=48.49 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=63.0
Q ss_pred eEEeeccccchhhhhhhhccCCCe---EEEEeecCCC-CCCchhhhcccc-cccccc----ccc------cCCCCCCccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSV---WVMNVVPTIG-TNHLPMILDRGF-VGVLHD----WCE------AFPTYPRTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~---~~m~v~~~~~-~~~l~~~~~rgl-~g~~~~----~~~------~~~~yp~t~d 372 (458)
=+||||.||+|--|=.+++.-+.. =-=+|+-.|- ++.|.+.-.|-. -+..-+ |-+ ||++ .+||
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd--~s~D 179 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD--DSFD 179 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC--Ccce
Confidence 579999999998877776311110 0012223333 477877665542 122222 322 4554 7999
Q ss_pred cccccccccccccCCCCCC-cchhhhhhcccccCCceEEEeccHHHH-HHHHHH
Q 012709 373 LVHAEGLLSLESGHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLI-ESARAL 424 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~-~~~~~~ 424 (458)
+.-...-. ..|. ++..|=|+-|+|+|||-|.+=+-..+= +.++.+
T Consensus 180 ~yTiafGI-------RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 180 AYTIAFGI-------RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred eEEEecce-------ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 86533221 2343 778999999999999999875544433 344444
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.39 Score=50.87 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=53.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh---hcc-cc-cc-ccccccccCCCC-CCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---LDR-GF-VG-VLHDWCEAFPTY-PRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~---~~r-gl-~g-~~~~~~~~~~~y-p~t~dl~h~~~~ 379 (458)
..|||+|||.|+++.+|.++.... .|+-.|.. ..+..+ ++| |+ +- +-+|-.+....+ +.+||.|=.+--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~---~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQA---QVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 469999999999999887543221 23333432 333332 122 32 11 123333321112 357999874432
Q ss_pred cccc---c--cC----CCC-------CCcchhhhhhcccccCCceEEEe
Q 012709 380 LSLE---S--GH----RHR-------CSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~---~--~~----~~~-------c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+|.. . +. ... .....+|-+.=++|+|||.+++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211 0 00 000 01125788899999999999975
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=90.50 E-value=3.9 Score=42.73 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCEEEEECCCCc----hhHHHHhhc--CCccceEEEEcC----CHHHHH--------HHHHcCCCeEEEeecc---CC--
Q 012709 45 VRTILDIGCGYG----SFGAHLFSK--ELLTMCIANYEA----SGSQVQ--------LTLERGLPAMIGSFAS---KQ-- 101 (458)
Q Consensus 45 ~~~VLDVGCG~G----~~~~~La~~--~~~~~~v~gvD~----S~~~i~--------~A~er~~~~~~~~~d~---~~-- 101 (458)
.-.|+|+|.|.| .+...|+.+ +.|..+|++++. +..-++ +|+..|++.+|...-. +.
T Consensus 111 ~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~ 190 (374)
T PF03514_consen 111 RVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLD 190 (374)
T ss_pred ceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCC
Confidence 347999999999 555556654 456789999999 665554 4455588887776422 22
Q ss_pred ---CCCCCCCeeEEEecccccccccc------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 102 ---LPYPSLSFDMLHCARCGVDWDQK------DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 102 ---Lpfp~~sFD~I~~~~~l~~~~~~------~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+...++..=+|.|...+++..++ +...+-...|-|+|.- +++++...+
T Consensus 191 ~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~ea~ 247 (374)
T PF03514_consen 191 PSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQEAD 247 (374)
T ss_pred HHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeecCC
Confidence 22334555566666666666422 3345667778899994 445554443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.45 Score=45.54 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=53.6
Q ss_pred CCCEEEEECCCCchhHHHHhh---cCCccceEEEEcCCHHHHH-HHHHc---CCCeEEEeeccCCCC----C----CCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQ-LTLER---GLPAMIGSFASKQLP----Y----PSLS 108 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~---~~~~~~~v~gvD~S~~~i~-~A~er---~~~~~~~~~d~~~Lp----f----p~~s 108 (458)
.++.|+|+|.-.|.-+.++++ .-....+|+++|+.-.... .|.+. ..++.+..+|..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 357999999999866665543 2224569999999543322 22222 257888888865432 1 1123
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 109 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 109 FD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
-.+|+-- . .|-..+--..|+....+++||+|+++.+..
T Consensus 112 ~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 3455432 2 454556567788899999999999998753
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.19 Score=45.77 Aligned_cols=48 Identities=25% Similarity=0.224 Sum_probs=34.9
Q ss_pred cccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 361 ~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
++.+|.-+.+||++=+...+..+ . +....|-||-|+|+|||.+++-|-
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~---~---d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV---V---DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC---C---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 34455445699999876655544 2 445789999999999999998653
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.6 Score=43.46 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=62.9
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~~ 117 (458)
...+||..|+| .|..+..+++.. ..+++.++.++...+.+++.+....+..-+ ... ....+.+|+|+....
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC
Confidence 34688888876 467777777642 347999999999999998776533222111 000 123457999885421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
....+.++.+.|+++|.++....
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13478889999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.24 Score=52.76 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=54.1
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhc----ccccc---ccccccccCCCCCCcccccccc-
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLHDWCEAFPTYPRTYDLVHAE- 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~~~~~~~~~~~yp~t~dl~h~~- 377 (458)
.+|+||+||.|+++.++.+.- ... .|+-++-. +.+..+-+ .|+-. +-.|..+....++.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 579999999999998887321 111 23333332 33333222 24311 2234333223345789998543
Q ss_pred -----ccccc-----cccCCCCCCc-------chhhhhhcccccCCceEEEe
Q 012709 378 -----GLLSL-----ESGHRHRCST-------LDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 -----~~~~~-----~~~~~~~c~~-------~~~~~e~drilrp~g~~~~~ 412 (458)
|++.. |. ...-.+ ..+|-+.=|+|||||.+++.
T Consensus 329 Pcsg~G~~~~~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYN--KTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhc--CCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22221 00 000111 25788889999999999974
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.4 Score=46.51 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCc----c----ceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELL----T----MCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPS 106 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~----~----~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~ 106 (458)
.+..+|+|+-+..|+++..|.++-.. . ..|+++|+.+-. -- ..+.-.++|+.... |..
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI--~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PI--EGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----cc--CceEEeecccCCHhHHHHHHHHhCC
Confidence 45679999999999999999875322 1 128899986521 00 12344455554432 555
Q ss_pred CCeeEEEeccc-----cccccccHH-----HHHHHHHhcccCCcEEEEEeC
Q 012709 107 LSFDMLHCARC-----GVDWDQKDG-----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ~sFD~I~~~~~-----l~~~~~~~~-----~~L~ei~RvLkPGG~liis~~ 147 (458)
+..|+|+|-.+ +|.+.+..+ .+|.-...+|||||.|+---+
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 68899999643 233322211 345566789999999987543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.19 Score=46.19 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=35.2
Q ss_pred CCCeeEEEecccccccc-------cc---HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 106 SLSFDMLHCARCGVDWD-------QK---DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 106 ~~sFD~I~~~~~l~~~~-------~~---~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
.++||.+.|..++.|.- -+ ..+.+.++.++|||||.|+++.|...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36799999987776741 11 13789999999999999999998653
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.89 Score=45.28 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=75.4
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC--CCCeeEEEeccccccc---
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCARCGVDW--- 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp--~~sFD~I~~~~~l~~~--- 121 (458)
+|+|+-||.|.++.-+.+.|+. .+.++|+++.+++..+.+.... +...|...+... ...+|+++.+.-=-.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999888887753 5789999999998887774332 445565555322 2569999976420111
Q ss_pred -----cccH-HHHHHHHHhc---ccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 122 -----DQKD-GILLLEVDRV---LKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 122 -----~~~~-~~~L~ei~Rv---LkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..++ ..++.++.|+ ++|. +++.+....... ......++.+...++++++....
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~----~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLT----HDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhc----cCchHHHHHHHHHHHhCCcEEEE
Confidence 1122 2344444444 4565 555554432211 01123456666667777776543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.2 Score=46.40 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=55.5
Q ss_pred ceeEEeeccccch--hhhhhhhccCCCeEEEEeecCCCCCCchh---hhcc------c-cccccccccccC--CC-CCCc
Q 012709 306 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLPM---ILDR------G-FVGVLHDWCEAF--PT-YPRT 370 (458)
Q Consensus 306 ~~r~~~d~~~~~g--~faa~l~~~~~~~~~m~v~~~~~~~~l~~---~~~r------g-l~g~~~~~~~~~--~~-yp~t 370 (458)
+-++||+.|||.| |.++|.. . ....|+-+|.+..++. -.++ + +--.-.+|.++. .. -++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~--~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL--F---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhc--c---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 3479999999988 7777666 1 1114555555443332 1111 1 234456897743 11 1468
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEE----e--ccHHHHHHHHH
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII----R--DTARLIESARA 423 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~----~--d~~~~~~~~~~ 423 (458)
||+|-|+.++=.. -..+.++-=++++|.|+|-+++ | ....+++++++
T Consensus 120 ~D~IlasDv~Y~~------~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 120 FDVILASDVLYDE------ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp BSEEEEES--S-G------GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred CCEEEEecccchH------HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 9999988887432 1234455568999999999887 2 23345565554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.52 Score=46.61 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=51.6
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-.|+||+||.|+++.+|.+.- ..- .|+-.+.. .-+..+-+ .|+ +-+++.=...++.....||.|-.+-=
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 359999999999998775321 111 23333433 33333222 233 12221111223332345888864322
Q ss_pred cccc---c--cCC----CCCC-------cchhhhhhcccccCCceEEEe
Q 012709 380 LSLE---S--GHR----HRCS-------TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~---~--~~~----~~c~-------~~~~~~e~drilrp~g~~~~~ 412 (458)
.|.. . ++. ..-. -..+|-++=++|||||++++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211 0 000 0000 125888899999999999985
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.73 Score=43.40 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=63.6
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC----CCchhhh-cccccc----ccccccccCCCCCCcccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMIL-DRGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~----~~l~~~~-~rgl~g----~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
+|||.|||-|.+---|.+..-+-= ++-++=+ ...+-|. .+|+-- .-.|.-.| ...+.-||+||-.|-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~---L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSK---LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCC---ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 899999999999888874321110 1111110 1112233 345421 00111111 222357999999999
Q ss_pred cccccc--CCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhh
Q 012709 380 LSLESG--HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTR 427 (458)
Q Consensus 380 ~~~~~~--~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~ 427 (458)
|+.++- ....-.+...+==++++|+|||.|+|..=.-..+++.+....
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 987631 011112234555688999999999997655555555554433
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.86 Score=46.07 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCC-CCCchhhhc----cccccccccccccCCCCC--Ccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEGL 379 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~-~~~l~~~~~----rgl~g~~~~~~~~~~~yp--~t~dl~h~~~~ 379 (458)
-|||+|.|||+|=+|=|....+-. -|+-+|- +-.+.++.| -|+--..+.-+-.-++-| +.||+|=|+=|
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~----~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAK----KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCc----eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 399999999999887555522211 0112221 123333333 111100011111111222 47888874432
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccHH-HHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~-~~~~~~~~~~~~~w~~~~~~ 436 (458)
=.-+ ..+.=++-|.|+|||++|++--.+ -.+.|.+...+=.|++.-+.
T Consensus 239 A~vl---------~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AEVL---------VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHH---------HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 2211 134446789999999999874221 13555555555567765554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=89.13 E-value=24 Score=34.68 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHH----HHHcCCCeEEEeeccCCCCCCC---CCeeEEEec
Q 012709 44 GVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPS---LSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~----A~er~~~~~~~~~d~~~Lpfp~---~sFD~I~~~ 115 (458)
.+++||-+|=..- +++..|. + ...+|+.+|+.+..+++ |.+.+.++.....|... |+|. ++||++++-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~--~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT--G-LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH--T---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCcHHHHHHHhh--C-CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeC
Confidence 4579999996554 3333332 2 34689999999999875 45568888888887643 3443 789999986
Q ss_pred ccccccccc-HHHHHHHHHhcccCCc-EEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 116 RCGVDWDQK-DGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 116 ~~l~~~~~~-~~~~L~ei~RvLkPGG-~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
- +++.. ...++......||..| ..+++-... +.....|.++++.+..+++-...
T Consensus 120 P---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~--------~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 120 P---PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK--------EASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT--------T--HHHHHHHHHHHHTS--EEEE
T ss_pred C---CCCHHHHHHHHHHHHHHhCCCCceEEEEEecC--------cCcHHHHHHHHHHHHHCCcCHHH
Confidence 3 23322 2367888888998766 433332211 11345688888888888876554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.34 Score=51.81 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=70.1
Q ss_pred CCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhh------hhhccCCCeEE
Q 012709 260 VHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNS------ALLEKGKSVWV 333 (458)
Q Consensus 260 ~~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa------~l~~~~~~~~~ 333 (458)
.+.|.|+.|.-.+..-=..-...+.......... .+--+|||+|||.|-... +-. +..+=
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~-----------~~~~vVldVGAGrGpL~~~al~A~~~~--~~a~~- 216 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYS-----------SKDKVVLDVGAGRGPLSMFALQAGARA--GGAVK- 216 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SE-----------ETT-EEEEES-TTSHHHHHHHHTTHHH--CCESE-
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhcccc-----------ccceEEEEeCCCccHHHHHHHHHHHHh--CCCeE-
Confidence 3689999998766542222222222222221000 013579999999998742 112 22222
Q ss_pred EEeecCCCC----CCch-hhhcccc---ccccccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccC
Q 012709 334 MNVVPTIGT----NHLP-MILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRP 405 (458)
Q Consensus 334 m~v~~~~~~----~~l~-~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp 405 (458)
|..++.. .+|+ .+-+.|+ |=++|.==+.+.. |--.|+|=.-=+-|.. .+- .+..+|.-.||.|+|
T Consensus 217 --VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSElLGsfg---~nE-l~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 217 --VYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSELLGSFG---DNE-LSPECLDAADRFLKP 289 (448)
T ss_dssp --EEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE---BTTB---TTT-SHHHHHHHGGGGEEE
T ss_pred --EEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEeccCCcc---ccc-cCHHHHHHHHhhcCC
Confidence 2222322 2342 2244444 6666655454444 4567776532222222 111 344678889999999
Q ss_pred CceEE----------EeccHHHHHHHHHHHh
Q 012709 406 EGWVI----------IRDTARLIESARALTT 426 (458)
Q Consensus 406 ~g~~~----------~~d~~~~~~~~~~~~~ 426 (458)
+|.+| +.+ ....+++.....
T Consensus 290 ~Gi~IP~~~t~ylaPiss-~~l~~~~~~~~~ 319 (448)
T PF05185_consen 290 DGIMIPSSYTSYLAPISS-PKLYQEVRNWWN 319 (448)
T ss_dssp EEEEESSEEEEEEEEEE--HHHHHHHHHHHG
T ss_pred CCEEeCcchhhEEEEeeC-HHHHHHHHhhcc
Confidence 99888 334 455666654433
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.79 Score=48.34 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=47.9
Q ss_pred ccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
+++...|..-+...+......+ ..+..-|||||.|||.++...++.+.. .+++++.-..|...|++-
T Consensus 42 ~dRNiky~~gi~~tIte~kh~~--~~gkv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 42 SDRNIKYRLGIEKTITEPKHVL--DIGKVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKI 108 (636)
T ss_pred ccccHHHHHHHHHHhcccceec--cCceEEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHH
Confidence 3455666666666665443321 122236999999999999999888743 799999999999988763
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.9 Score=45.53 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=65.4
Q ss_pred CCCCEEEEECCCCchh-HHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---------CC--C-------
Q 012709 43 AGVRTILDIGCGYGSF-GAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QL--P------- 103 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~-~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---------~L--p------- 103 (458)
..+.+|+=+|||.-.+ +...++.- ...|+++|.+++-++.+++.|........... .+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3468999999996544 44444431 33799999999999999987765221111000 00 0
Q ss_pred -CCC--CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 104 -YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 104 -fp~--~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+ +.+|+|+..-. ..-...+..+.+++.+.+||||.++....
T Consensus 241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999997742 33222343345999999999999998765
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=2.5 Score=42.85 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEee--ccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSF--ASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~--d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++||=+||| .|..+..+++. |. .+++++|.+++.++.|++.|....+... +...+....+.||+|+-.-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 35688888986 34555555553 22 2688999999999999988764332111 11111111235898885421
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+....+.|++||.+++...
T Consensus 245 ----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2367888999999999999874
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.22 Score=42.78 Aligned_cols=39 Identities=21% Similarity=0.695 Sum_probs=26.9
Q ss_pred CeeEEEeccccccc---c-ccHH--HHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDW---D-QKDG--ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~---~-~~~~--~~L~ei~RvLkPGG~liis~~ 147 (458)
.||+|.|..+ .-| . .|.+ .+++.+++.|+|||.|++--.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4999999754 222 1 1222 799999999999999999643
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.59 Score=40.14 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA 77 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~ 77 (458)
......|+|||+|.+..-|.+.|++ =.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP---GWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC---cccccc
Confidence 3457999999999999999998874 456665
|
; GO: 0008168 methyltransferase activity |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.32 E-value=0.22 Score=49.67 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeE------------EEeeccC-----CCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM------------IGSFASK-----QLPYP 105 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~------------~~~~d~~-----~Lpfp 105 (458)
...++|||+|||.|.-+.+....+. .++...|.+...++.-.-....+. +...-.. ..-..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 4567999999999999888887652 477888888766531110000000 0000000 01111
Q ss_pred C-CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 S-LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 ~-~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. -.||+|.++..++........+......++++.|.++++..
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 1 26899998887666553333336677778899999888764
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.31 E-value=2.4 Score=38.66 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeecc
Q 012709 26 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFAS 99 (458)
Q Consensus 26 ~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~ 99 (458)
+++++.+.+.. ..+..+.+|+|.|.|......++.+.. ..+|++.++-.+.+++-+ +....|..-|.
T Consensus 59 eQv~nVLSll~-----~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 59 EQVENVLSLLR-----GNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred HHHHHHHHHcc-----CCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 45555555432 244468999999999999888887732 678999999998887655 22455555555
Q ss_pred CCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 100 KQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 100 ~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
....+.+-.+-+|+-. .....+ +-..+..-+..+-.++-.-
T Consensus 132 wK~dl~dy~~vviFga---es~m~d---Le~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIFGA---ESVMPD---LEDKLRTELPANTRVVACR 172 (199)
T ss_pred hhccccccceEEEeeh---HHHHhh---hHHHHHhhCcCCCeEEEEe
Confidence 5555544344444433 222322 2223333455665555443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.76 Score=44.67 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=69.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC--CCchhhhcccc--ccccc-cccccCCCCC-C-ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGF--VGVLH-DWCEAFPTYP-R-TYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~--~~l~~~~~rgl--~g~~~-~~~~~~~~yp-~-t~dl~h~~~~~ 380 (458)
..++++|||.|.|-++|..++...-.+-|=+.... .-+.-|-+.|| |-++. |=-+-+..++ . +.|-|+. .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 47999999999999999865555544444333332 34445667777 44442 2122222222 2 6776662 23
Q ss_pred c-ccccCCC---CCCcchhhhhhcccccCCceEEEe-ccHHHHHH-HHHHHhh
Q 012709 381 S-LESGHRH---RCSTLDIFTEIDRILRPEGWVIIR-DTARLIES-ARALTTR 427 (458)
Q Consensus 381 ~-~~~~~~~---~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~-~~~~~~~ 427 (458)
. .|..+.+ |=--...|=++-|+|+|||.+-+. |..+..+. +...+..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 2 3432211 222236788899999999999995 55555555 5555443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=0.54 Score=50.10 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhh----hcccc--c-cccccccccCCCCCCcccccccc-
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMI----LDRGF--V-GVLHDWCEAFPTYPRTYDLVHAE- 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~----~~rgl--~-g~~~~~~~~~~~yp~t~dl~h~~- 377 (458)
..|+|++||.|+++.+|.+. ...- .|+-.+.. .-+..+ -..|+ | -+-+|..... -+.+||.|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 57999999999988776532 1111 23333433 333322 22343 1 1223333221 13579988643
Q ss_pred -----ccccc-----cccCCCCCCc-------chhhhhhcccccCCceEEEec
Q 012709 378 -----GLLSL-----ESGHRHRCST-------LDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 -----~~~~~-----~~~~~~~c~~-------~~~~~e~drilrp~g~~~~~d 413 (458)
|.+.. |. ...-.+ ..+|-++=|+|||||.+++..
T Consensus 327 Pcsg~g~~~r~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWK--LTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 23221 10 001111 158889999999999999963
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.89 E-value=0.58 Score=47.28 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=71.6
Q ss_pred eeEEeeccccchhhhhhhhcc--CCCeEEEEeecCCCCCCc-hhhh--cccccc----ccccccccCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGTNHL-PMIL--DRGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~--~~~~~~m~v~~~~~~~~l-~~~~--~rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-+.|+|+|||-|++.|.++.. -...-+.|+=.......+ .-.+ +.||=. ..+|--+..+ -...||+|-+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~~ 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFLA 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEEe
Confidence 488999999999886665421 112222232211111111 1111 233311 1123333211 12579999976
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccHH---HHHHHHHHHhhccceEEEEeeccCC-CccEEEEEecc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR---LIESARALTTRLKWDARVIEIESNS-DERLLICQKPF 452 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~k~~ 452 (458)
.+-.+ ++-.-..+|-.+=|.|||||++++|--.. ++-.+-....-=.|+....-+..++ -.-++|++|.-
T Consensus 203 -ALi~~----dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 203 -ALVGM----DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred -ccccc----ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 32221 12233568888999999999999995321 1111111111117886665544333 37888998864
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.6 Score=49.64 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhc----cccc---cccccccccCC-CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFP-TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~~~~~~~~~-~yp~t~dl~h~~ 377 (458)
.+|+||+||.||.+.+|.+.- ..- .|+-.|-. .-|..+-+ .|+- -+-.|... ++ ..+.+||.|=.+
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 469999999999988776431 111 34444443 44444322 2441 11233332 22 123578988643
Q ss_pred ccccccccCCCC----C-----C-------cchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHR----C-----S-------TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~----c-----~-------~~~~~~e~drilrp~g~~~~~ 412 (458)
---|..-.-... . . -..+|-+.=+.|+|||.+++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 222211000000 0 0 125677888999999999984
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.59 Score=45.15 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC----CCCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL----PYPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L----pfp~~sFD~I~~ 114 (458)
...|+|.-||.|..+...+.++. .|+++|+++.-+..|+++ |+ ++.|.++|...+ .+....+|+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 45899999999999888888764 799999999999999887 33 577888875443 344344556654
Q ss_pred c
Q 012709 115 A 115 (458)
Q Consensus 115 ~ 115 (458)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 4
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.2 Score=38.15 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---CC-C-CCCCCeeEEEeccccccccccHHHH
Q 012709 54 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---QL-P-YPSLSFDMLHCARCGVDWDQKDGIL 128 (458)
Q Consensus 54 G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---~L-p-fp~~sFD~I~~~~~l~~~~~~~~~~ 128 (458)
|.|..+..+++... .+++++|.++.-++.+++.|....+..-+.. .+ . ...+.+|+|+-.-. . ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~-~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------S-GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------S-HHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------c-HHH
Confidence 45777778877532 6999999999999999998844333221110 00 1 23357999984421 1 458
Q ss_pred HHHHHhcccCCcEEEEEeCCC
Q 012709 129 LLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 129 L~ei~RvLkPGG~liis~~~~ 149 (458)
+.+...+|+|+|.+++.....
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHhccCCEEEEEEccC
Confidence 999999999999999998754
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.33 E-value=3.9 Score=40.94 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=82.7
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCc
Q 012709 267 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL 345 (458)
Q Consensus 267 ~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l 345 (458)
-.|+.|-+.|-.-.+.. . ... ==-++|.|||.|.-+-+|+.. .+ ---|..++-+ .-+
T Consensus 128 pETEE~V~~Vid~~~~~--~-~~~----------------~~~ildlgtGSGaIslsll~~-L~--~~~v~AiD~S~~Ai 185 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNS--E-HSK----------------HTHILDLGTGSGAISLSLLHG-LP--QCTVTAIDVSKAAI 185 (328)
T ss_pred ccHHHHHHHHHHHHhhh--h-hcc----------------cceEEEecCCccHHHHHHHhc-CC--CceEEEEeccHHHH
Confidence 46899999986522211 1 111 127999999999998888721 22 1111122211 222
Q ss_pred hhhhc-------ccccccccc--ccccCCCCC---Cccccccccc--cccc----cc------------cCCCCCC--cc
Q 012709 346 PMILD-------RGFVGVLHD--WCEAFPTYP---RTYDLVHAEG--LLSL----ES------------GHRHRCS--TL 393 (458)
Q Consensus 346 ~~~~~-------rgl~g~~~~--~~~~~~~yp---~t~dl~h~~~--~~~~----~~------------~~~~~c~--~~ 393 (458)
.++-| -|-|++.|. =-+.|.+|| -+||+|=++- +++. .+ .+...|. +.
T Consensus 186 ~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~ 265 (328)
T KOG2904|consen 186 KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLV 265 (328)
T ss_pred HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHH
Confidence 22222 355888876 234466666 6788765432 1111 10 0011121 11
Q ss_pred hhhhhhcccccCCceEEEe-----ccHHHHHHHHHHHhh-ccceEEEEeeccCCCccEEEEEe
Q 012709 394 DIFTEIDRILRPEGWVIIR-----DTARLIESARALTTR-LKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 394 ~~~~e~drilrp~g~~~~~-----d~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
.+..=.=|.|+|||++++. +...++..+..-..- --|.+.+.. +-.+.+++++..+
T Consensus 266 ~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~-Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 266 HYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVS-DFAGRPRFVIIHR 327 (328)
T ss_pred HHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheee-cccCCcceEEEEe
Confidence 4555677999999999984 334444443333222 234444442 2333467766544
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=87.19 E-value=1 Score=45.72 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=51.6
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCC------CCCchhhhcccc----cc-ccccccccCCCC-CCcccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIG------TNHLPMILDRGF----VG-VLHDWCEAFPTY-PRTYDL 373 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~------~~~l~~~~~rgl----~g-~~~~~~~~~~~y-p~t~dl 373 (458)
-++||++|||.|+.+..++ +.+ +..+=+|=.+. ...++-+ ..|+ +- ++.|=-+-.... ++.||+
T Consensus 92 pkrVLiIGgG~G~~~rell--k~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIA--RHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCeEEEEcCCccHHHHHHH--hCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 5789999999999999998 443 43222222221 0111111 0111 11 111100001122 368999
Q ss_pred ccccccccccccCCCCCC--cchhhhhhcccccCCceEEEe
Q 012709 374 VHAEGLLSLESGHRHRCS--TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~--~~~~~~e~drilrp~g~~~~~ 412 (458)
|-.+. ++.. ...-. -..++-.+-|.|+|||.++.+
T Consensus 169 Ii~D~-~dp~---~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPV---GPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 97543 3322 11100 124667889999999999875
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.05 E-value=1.7 Score=45.15 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=34.5
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 86 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~ 86 (458)
..+...|.|+|+|.|.++.+|.-.. +.+|.+||-|....+.|+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 4567899999999999999997543 358999999977666554
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=6.5 Score=38.86 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=65.9
Q ss_pred cCCCCEEEEECCCCchhHHHHhh----cCCccceEEEEcCCHHHHHHHH-----Hc-CCCeEEEeeccC----CCCCCCC
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTL-----ER-GLPAMIGSFASK----QLPYPSL 107 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~----~~~~~~~v~gvD~S~~~i~~A~-----er-~~~~~~~~~d~~----~Lpfp~~ 107 (458)
..++.+.+|+|+|+..-++.|.+ ++. ..+++++|+|...++... +. ++++.-..++.+ .+| ..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CC
Confidence 34568999999999977777654 332 468999999998775322 21 334433344321 233 22
Q ss_pred CeeE-EEeccccccccccH-HHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 108 SFDM-LHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 108 sFD~-I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+--+ ++....+-++.+.+ ..+|.++...|+||-+|++..-..+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 2222 22222344555433 3789999999999999999775443
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=86.85 E-value=3 Score=42.40 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=38.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
....++|.=||.|..+..++++. +..+|+|+|.++.+++.|+++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHH
Confidence 34589999999999999999863 347999999999999999876
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=0.66 Score=48.82 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=65.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc-c---cc-ccccccCCCC---CCccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV-G---VL-HDWCEAFPTY---PRTYDLV 374 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~-g---~~-~~~~~~~~~y---p~t~dl~ 374 (458)
++|||++||+|+|+-++.. ...- .|+-++.. ..+..+-+ -|+= . ++ .|..+.+..+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~-~ga~---~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALM-GGCS---QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHh-CCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 6799999999999855431 1111 23333433 23332211 1321 0 11 1222222122 2479998
Q ss_pred cccccc-cccccC--CCCCCcchhhhhhcccccCCceEEEec------cHHHHHHHHHHHhhccceEEEEe
Q 012709 375 HAEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRD------TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 375 h~~~~~-~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~~d------~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
=++-=+ +.-+.. .......+++.-.-++|+|||.++.-. ..++.+-+.+-+..-..++++..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 766332 111000 001234555666678999999999843 24556666666766667777664
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.42 E-value=0.81 Score=44.26 Aligned_cols=135 Identities=15% Similarity=0.213 Sum_probs=73.3
Q ss_pred ceeEEeeccccchhhhhhhhccCCC----eEEEEeecCCCCCCchhhhcccc---cccc--ccccccCC-CCCCcccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKS----VWVMNVVPTIGTNHLPMILDRGF---VGVL--HDWCEAFP-TYPRTYDLVH 375 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~----~~~m~v~~~~~~~~l~~~~~rgl---~g~~--~~~~~~~~-~yp~t~dl~h 375 (458)
.-++||.+|.+.|==|..|. +.-| +.+.=+-|......-...-+-|+ |=++ .|+-+-++ ...-+||||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA-~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMA-LALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHH-hhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 36899999998884444444 1111 11111111111111112223333 1122 48878777 4677999988
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEe--------------ccHHHHHHHHHHHhhccceEEEEeec-cC
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--------------DTARLIESARALTTRLKWDARVIEIE-SN 440 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~--------------d~~~~~~~~~~~~~~~~w~~~~~~~~-~~ 440 (458)
.+. ++-.....+=+.=+.|||||.+|+. +.......++....-+.++-+..-+- ..
T Consensus 138 IDa---------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~ 208 (219)
T COG4122 138 IDA---------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPL 208 (219)
T ss_pred EeC---------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEec
Confidence 442 3444455666666779999999962 33345555666666666553222110 11
Q ss_pred CCccEEEEEec
Q 012709 441 SDERLLICQKP 451 (458)
Q Consensus 441 ~~~~~~~~~k~ 451 (458)
+ ++++|+.|.
T Consensus 209 g-DGl~v~~k~ 218 (219)
T COG4122 209 G-DGLLLSRKR 218 (219)
T ss_pred C-CceEEEeec
Confidence 2 788998885
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.4 Score=47.97 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=60.8
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCCCCchhhhc-------------ccccccc-ccccccCCCCCCcc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILD-------------RGFVGVL-HDWCEAFPTYPRTY 371 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~~~l~~~~~-------------rgl~g~~-~~~~~~~~~yp~t~ 371 (458)
-++|+|+|||.|+.+..+. +.+ +=.+=+|=.+. .-+.++-+ ..=+-++ .|=-+-....+++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll--~~~~v~~v~~VEid~-~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVL--KYPDVEQVTLVDLDP-AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHH--hCCCcCeEEEEECCH-HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4789999999999998887 332 11111111111 11111111 0001111 11111122346789
Q ss_pred ccccccccccccccCCCC-CC--cchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccceEE
Q 012709 372 DLVHAEGLLSLESGHRHR-CS--TLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDAR 433 (458)
Q Consensus 372 dl~h~~~~~~~~~~~~~~-c~--~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~~~ 433 (458)
|+|-.+- .... ... .. -..++-++-|.|+|||.++++. ..+...++.+.++.....+.
T Consensus 375 DvIi~D~-~~~~---~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDL-PDPS---NPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeC-CCCC---CcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9997662 2211 100 01 1235557789999999999953 24445566666666645433
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.23 E-value=7.7 Score=40.29 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=67.7
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCcc---ceEEEEcCCHHHHH---HHHHcCC--CeEEEeeccCCCC---------C
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLT---MCIANYEASGSQVQ---LTLERGL--PAMIGSFASKQLP---------Y 104 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~---~~v~gvD~S~~~i~---~A~er~~--~~~~~~~d~~~Lp---------f 104 (458)
..+..+|||.-+-+|+=+..|.+..... ..+++-|.+..-+. ...++-. ...+...++...| .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 3456799999999999998888764322 26889999876433 3333321 2223322322222 2
Q ss_pred CCCCeeEEEec-cc-----------ccc--ccc--------cHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 105 PSLSFDMLHCA-RC-----------GVD--WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 105 p~~sFD~I~~~-~~-----------l~~--~~~--------~~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
....||-|+|- -| +.. |.. -.-.+|....++||+||.++.|+-..++
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 33569999872 11 000 111 1125788999999999999999975543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.05 E-value=0.86 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.8
Q ss_pred hhhhhhcccccCCceEEEeccH
Q 012709 394 DIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 394 ~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+|.|.-=+||+||.++.-..+
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 6788889999999999865443
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.00 E-value=7 Score=42.31 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcC---CccceEEEEcCCHHHHHHHHHc----CCC--eEEEeeccCCCCC-----CCCCe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPY-----PSLSF 109 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~er----~~~--~~~~~~d~~~Lpf-----p~~sF 109 (458)
...+|.|--||+|.+.....+.. .....+.|.|+++.....|+-+ +++ +....+++..-|. ..+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 33589999999997766554321 1025799999999999999876 444 3455555444443 23679
Q ss_pred eEEEeccccc--cccc---------------------cH-HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 DMLHCARCGV--DWDQ---------------------KD-GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D~I~~~~~l~--~~~~---------------------~~-~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|.|+++--+- .|.. .. ...++.+...|+|||+..++.+..
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 9999874321 1111 11 357889999999999877776643
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.65 E-value=2.5 Score=42.62 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
.++++||=||-|.|.+.+...+. ....++.-+|+.+..++..++. +..+.+..+|...+ ....+.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 35689999999999998888775 3345788899988888776654 34566666654332 244688999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.--. -...+. ...++.-+.+.||++|+++...-+.
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 985321 111111 1257778999999999999987533
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.36 E-value=3.1 Score=43.11 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-------CccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-------LLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-------~~~~~v~gvD~S~~~i~~A~er 88 (458)
.+..++|+|.|+|.++..+++.. ....++.-+|+|+...+.=+++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 34689999999999998887542 2367899999999987665544
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=84.77 E-value=1.8 Score=43.47 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred ceeEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhccccc---cc-cccccccCCC-----CCCcccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---GV-LHDWCEAFPT-----YPRTYDL 373 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl~---g~-~~~~~~~~~~-----yp~t~dl 373 (458)
+-++||++|+++|..+.+|.+. +..|.++=.-|....-.-..+-.-|+- =+ ..|-.+-++. .+.+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 3589999999999998888631 112333322221110001112223331 00 1111222222 1357999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-------------H---HHHHHHHHHHhhccceEEEEee
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------------A---RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-------------~---~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
+-.+.==. ....++-..=+.|||||.+|+.+- . .+-+-.+.+...=++++.+...
T Consensus 198 VFIDa~K~---------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKR---------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHH---------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 87554322 233444455589999999997311 0 1122233345556677777654
Q ss_pred ccCCCccEEEEEec
Q 012709 438 ESNSDERLLICQKP 451 (458)
Q Consensus 438 ~~~~~~~~~~~~k~ 451 (458)
. ++++|++|.
T Consensus 269 g----DGl~i~~K~ 278 (278)
T PLN02476 269 G----DGMTICRKR 278 (278)
T ss_pred C----CeeEEEEEC
Confidence 2 678888874
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=84.76 E-value=1.6 Score=41.66 Aligned_cols=134 Identities=21% Similarity=0.341 Sum_probs=80.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCc-hh----hhcccc----cccccccccc-------CCCCCCccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHL-PM----ILDRGF----VGVLHDWCEA-------FPTYPRTYD 372 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l-~~----~~~rgl----~g~~~~~~~~-------~~~yp~t~d 372 (458)
.||.+++|+|--|++... ..|-+ ---|+|-...+ +- +-+-|+ ..+.-|-+.+ -+.++.+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~-~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ-ALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHH-HCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 699999999976666642 12211 23466655333 32 345565 2222232222 334678999
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEE------------------------eccH---HHHHHHHHHH
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII------------------------RDTA---RLIESARALT 425 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~------------------------~d~~---~~~~~~~~~~ 425 (458)
.|-+.+++-.. .....+-++-+.-|+|+|||.+++ ||.. .-++.|.+++
T Consensus 105 ~i~~~N~lHI~----p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 105 AIFCINMLHIS----PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred eeeehhHHHhc----CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 98877766422 122346788899999999999996 1211 1157788888
Q ss_pred hhccceEEEEeeccCCCccEEEEEe
Q 012709 426 TRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 426 ~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
.+-..+..-.- +=-...++||++|
T Consensus 181 ~~~GL~l~~~~-~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEEDI-DMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCccc-ccCCCCeEEEEeC
Confidence 88777643221 1112378999987
|
The function of this family is unknown. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=84.61 E-value=2.6 Score=44.08 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=66.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
.-+|||.=+|+|.-+..++.......+|+..|+|+++++..+++ ++. +.+...|+..+= .....||+|-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 34899999999977777766521235899999999999988776 333 456666655542 24578999973
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
-++- .+..+|..+.+.+|.||.+.++....
T Consensus 128 --DPfG-Sp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 128 --DPFG-SPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred --CCCC-CccHhHHHHHHHhhcCCEEEEecccc
Confidence 2333 45679999999999999999997644
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.51 E-value=5.2 Score=44.78 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhhc-------CC----ccceEEEEcCCH---HHHHHHHHc--------------------CC
Q 012709 45 VRTILDIGCGYGSFGAHLFSK-------EL----LTMCIANYEASG---SQVQLTLER--------------------GL 90 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~-------~~----~~~~v~gvD~S~---~~i~~A~er--------------------~~ 90 (458)
.-+|||+|-|+|.+.....+. +. ...+++++|..+ +.+..+.+. +.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 358999999999765554421 11 146889999643 333222210 11
Q ss_pred ----------CeEEEeeccCC-CCCCCCCeeEEEeccccccccccH----HHHHHHHHhcccCCcEEEEEeCCCCccccc
Q 012709 91 ----------PAMIGSFASKQ-LPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLTNPQAFL 155 (458)
Q Consensus 91 ----------~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l~~~~~~~----~~~L~ei~RvLkPGG~liis~~~~~~~~~~ 155 (458)
...+..+|+.. ++--...||+++.-. |-+-. +| ..+|+++.|+++|||.|+-...
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t~-------- 207 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAK-NPDMWSPNLFNALARLARPGATLATFTS-------- 207 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCcc-ChhhccHHHHHHHHHHhCCCCEEEEeeh--------
Confidence 22344455432 221125699999642 23322 22 3699999999999999996653
Q ss_pred ccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 156 RNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 156 ~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
-..++.-+...+|++..
T Consensus 208 --------a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 208 --------AGFVRRGLQEAGFTVRK 224 (662)
T ss_pred --------HHHHHHHHHHcCCeeee
Confidence 12456666777777654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.36 E-value=7.8 Score=39.19 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
....+||=.|+| .|..+..+++.. ..++++++.+++-.+.|++.|....+.. ... ..+.+|+++-...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~---- 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP---- 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC----
Confidence 345689999975 334445555532 3478899999998999998876433221 111 1245787653221
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+....+.|++||++++...
T Consensus 233 --~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 --A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2378889999999999998774
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=84.35 E-value=5.7 Score=37.31 Aligned_cols=137 Identities=21% Similarity=0.344 Sum_probs=77.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccch--hhhhhhhccCCCeEEEEeecCCCC--
Q 012709 267 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 342 (458)
Q Consensus 267 ~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g--~faa~l~~~~~~~~~m~v~~~~~~-- 342 (458)
...+.|.+.+-.=...+. .+... .. +++|+|+|-| |.--|+. -... +|+-.++.
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~~~---------------~~-~~lDiGSGaGfPGipLaI~--~p~~---~~~LvEs~~K 83 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLPDF---------------GK-KVLDIGSGAGFPGIPLAIA--RPDL---QVTLVESVGK 83 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS-CC---------------CS-EEEEETSTTTTTHHHHHHH---TTS---EEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhccC---------------Cc-eEEecCCCCCChhHHHHHh--CCCC---cEEEEeCCch
Confidence 345788887765344343 33222 11 6999999866 3333333 1111 23333332
Q ss_pred --CCch-hhhcccc--ccccccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe---cc
Q 012709 343 --NHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DT 414 (458)
Q Consensus 343 --~~l~-~~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~---d~ 414 (458)
+=|. ++-+=|| +=++|...|. ..++..||++=| ..=+++..++--+-+.|+|||.++.- +.
T Consensus 84 K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a----------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 84 KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA----------RAVAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE----------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe----------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 2222 4555667 6688888888 778899999873 22345555666677899999999884 33
Q ss_pred HHHHHHHHHHHhhccceEEEEe
Q 012709 415 ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 415 ~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
.+.+++.++-.+.+.++.....
T Consensus 153 ~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 153 EEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp HHHHHTHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHhHHHHhCCEEeeec
Confidence 4555666666666666655443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.07 E-value=5.8 Score=40.58 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC---------CCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---------PYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L---------pfp~~sFD~I~~ 114 (458)
.+.+||=+|||+=.+..-+..+.+-..+|+.+|+++.-++.|++-|..+.......... .+....||+.+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 45699999999644444343333345689999999999999999877655443332211 122244888774
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..- .+..++.....+|+||.+++++...
T Consensus 249 CsG-------~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 249 CSG-------AEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred ccC-------chHHHHHHHHHhccCCEEEEeccCC
Confidence 321 1335667788899999999888644
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=83.89 E-value=1.9 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=23.6
Q ss_pred chhhhhhcccccCCceEEEec----cHHHHHHHHHHHhh
Q 012709 393 LDIFTEIDRILRPEGWVIIRD----TARLIESARALTTR 427 (458)
Q Consensus 393 ~~~~~e~drilrp~g~~~~~d----~~~~~~~~~~~~~~ 427 (458)
..+|-++=|.|||||.+++.. ..+..+.|+.+++.
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 377889999999999999752 12333445555544
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.36 E-value=6.3 Score=40.94 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=71.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCC-CCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYP-SLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l 118 (458)
..+|||-=+|+|.-+..++... +...++.-|+|+.+++.++++ +........|+..+=.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----
Confidence 5799999999998888777653 233899999999999998876 23444554554443221 266888752
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
-++- .|..++..+.+.+|.||++.++....
T Consensus 128 DPFG-SPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 128 DPFG-SPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred CCCC-CCchHHHHHHHHhhcCCEEEEEeccc
Confidence 3333 45568999999999999999987655
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=82.79 E-value=3.8 Score=38.26 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=33.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 87 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e 87 (458)
....|||-=||+|+.+....+.+- +.+|+|+++..++.|.+
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 457999999999999998887664 79999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=1.1 Score=44.85 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=55.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCC--CCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY--PRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~y--p~t~dl~h~~~~~~~~~ 384 (458)
..|+|+|||.|.|+.++..+... .+|+-++-. ..+...-++ +-. ..=.|.-+..+ +++||+|=++--|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~---~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP---EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccC
Confidence 46999999999998888632111 134444433 344433322 110 00012222222 35899988876665421
Q ss_pred cC--CC--CC----------CcchhhhhhcccccCCceEEE
Q 012709 385 GH--RH--RC----------STLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 385 ~~--~~--~c----------~~~~~~~e~drilrp~g~~~~ 411 (458)
.. .. +. .+...+-..-++|.|+|.+++
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 10 01 11 245778889999999998876
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.61 E-value=8 Score=36.69 Aligned_cols=96 Identities=23% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
....+||-+|+|. |.....+++.. ..++++++.++...+.+++.+....+...+ ... ....+.+|+++...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECC
Confidence 3457899999985 65666666542 248999999998888887765322211110 000 11235699998642
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. . ...+..+.+.|+++|.++.....
T Consensus 210 ~------~-~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 210 G------G-PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred C------C-HHHHHHHHHhcccCCEEEEEccC
Confidence 1 1 13677788899999999987653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=3.6 Score=40.61 Aligned_cols=68 Identities=15% Similarity=-0.003 Sum_probs=47.3
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH---Hc-------C----CCeEEEeeccCCC-CCCCCCeeE
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER-------G----LPAMIGSFASKQL-PYPSLSFDM 111 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~---er-------~----~~~~~~~~d~~~L-pfp~~sFD~ 111 (458)
+|||.=+|.|..+..++.+|. +|+++|-|+......+ ++ + .++.+...|.... .-...+||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 899999999999999999876 7999999997655433 22 1 1244555554332 212247999
Q ss_pred EEeccc
Q 012709 112 LHCARC 117 (458)
Q Consensus 112 I~~~~~ 117 (458)
|+.--.
T Consensus 168 VYlDPM 173 (250)
T PRK10742 168 VYLDPM 173 (250)
T ss_pred EEECCC
Confidence 997654
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=82.01 E-value=6.8 Score=39.80 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+||=+||| .|.++..++++-....+++++|.+++-++.|++-+. ... . ..+. ....+|+|+-.-. . .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~-~--~~~~-~~~g~d~viD~~G--~-~ 233 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYL-I--DDIP-EDLAVDHAFECVG--G-R 233 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eee-h--hhhh-hccCCcEEEECCC--C-C
Confidence 45789999987 344545555431112378999999988888875322 111 1 1111 1124888884311 0 0
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-...+.+..++|++||++++...
T Consensus 234 -~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 -GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -ccHHHHHHHHHhCcCCcEEEEEee
Confidence 013478889999999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.83 E-value=5.8 Score=42.36 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCCEEEEECCCCchh--HHHHhhcCCccceEEEEcCCHHHHHHHHHc--C-C---CeEEE--eeccCCCCCCC-CCeeEE
Q 012709 44 GVRTILDIGCGYGSF--GAHLFSKELLTMCIANYEASGSQVQLTLER--G-L---PAMIG--SFASKQLPYPS-LSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~--~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~-~---~~~~~--~~d~~~Lpfp~-~sFD~I 112 (458)
.++.++|+|.|.|.- +..+..+. ..-.+..||.|.+|....... + - ...+. +.--..+|.+. ..||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 456788888887643 33333332 234688999999998776543 1 0 11111 12223456544 459999
Q ss_pred EeccccccccccHH--HHHHH-HHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQKDG--ILLLE-VDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~~~~--~~L~e-i~RvLkPGG~liis~~~~ 149 (458)
+|++.+++...... ...++ ..+..++||++++.+...
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999888764322 23333 456679999999998755
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=81.76 E-value=10 Score=37.79 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+||-+||| .|.....+++.. ..+++.++.+++..+.+.+.+....+.........-..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 34688889987 666655565542 3478999999999888876664322221110000001245898885411
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.++.+.|+++|.++....
T Consensus 235 -~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -c-HHHHHHHHHhcccCCEEEEECC
Confidence 1 2367888999999999998764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=81.67 E-value=1.9 Score=43.93 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc------c-cccccc-cccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF------V-GVLHDW-CEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl------~-g~~~~~-~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|.+++. +|+-+|-. +-|.+.-+|.- . +.--+| +..+...+.+||+|=+..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 4799999999999999984333 44555544 45555444420 0 011111 111233357899988777
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
++-++. .. .+..++-.+-++ .+||.+|
T Consensus 221 vL~H~p---~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYP---QD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecC---HH-HHHHHHHHHHhh-cCCEEEE
Confidence 766552 11 122344444443 4666554
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=81.53 E-value=0.8 Score=43.79 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred ceeEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcccc---cccc-ccccccCCCC-----CCcccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPTY-----PRTYDL 373 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl---~g~~-~~~~~~~~~y-----p~t~dl 373 (458)
+-|+||.+|+++|==|.+|.+. +-.|+++-.-|....-.-..+-.-|+ |-+. .|..+-+++. +.+||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4799999999998655555421 23455554433222111112222344 2222 2333333321 468999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEee
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
|-.+.-=+.| ...+-..=+.|||||.+|+.+.. .+-+-.+.|.+-=+.++.+...
T Consensus 125 VFiDa~K~~y---------~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 125 VFIDADKRNY---------LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEESTGGGH---------HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred EEEcccccch---------hhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 9866533333 22333344899999999984221 1223334445555666666643
Q ss_pred ccCCCccEEEEEec
Q 012709 438 ESNSDERLLICQKP 451 (458)
Q Consensus 438 ~~~~~~~~~~~~k~ 451 (458)
. ++++|++|.
T Consensus 196 g----dGl~l~~K~ 205 (205)
T PF01596_consen 196 G----DGLTLARKR 205 (205)
T ss_dssp T----TEEEEEEE-
T ss_pred C----CeeEEEEEC
Confidence 2 789999884
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.43 E-value=1.3 Score=44.27 Aligned_cols=53 Identities=23% Similarity=0.136 Sum_probs=33.7
Q ss_pred EEeeccCCC--CCCCCCeeEEEeccccc---c-------cc-----ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 94 IGSFASKQL--PYPSLSFDMLHCARCGV---D-------WD-----QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 94 ~~~~d~~~L--pfp~~sFD~I~~~~~l~---~-------~~-----~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+..+|+... .+++++||+|++.--.. . +. .-....+.++.|+|||||.+++..
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 444554442 35678899999853211 0 10 001358899999999999999864
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.96 E-value=4.9 Score=40.15 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
..++.|||-=||+|+.+....+.+- +++|+|++++-++.|++|
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHH
Confidence 4567999999999999988877653 899999999999999988
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=80.69 E-value=11 Score=37.76 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccc-eEEEEcCCHHHHHHHHHcCCCeEEEeecc---CCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFAS---KQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~er~~~~~~~~~d~---~~Lpfp~~sFD~I~~~~~l 118 (458)
...+||-.|||. |..+..+++.. .. .+++++.++...+.+++.+... +..... ..+....+.+|+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGADE-TVNLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCCE-EEcCCchhhhhhhccCCCccEEEECCC-
Confidence 457888888874 55555566542 23 6889999999888777766432 221111 112112245899985421
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.++.+.|+++|+++....
T Consensus 241 -----~-~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 -----A-PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 1 2367889999999999997653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=80.69 E-value=26 Score=32.25 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=73.7
Q ss_pred EECCCCchhHHHHhhcCCccceEEE--EcCCHHHHH----------HHHHcCCCeEEEeeccCCCC----CCCCCeeEEE
Q 012709 50 DIGCGYGSFGAHLFSKELLTMCIAN--YEASGSQVQ----------LTLERGLPAMIGSFASKQLP----YPSLSFDMLH 113 (458)
Q Consensus 50 DVGCG~G~~~~~La~~~~~~~~v~g--vD~S~~~i~----------~A~er~~~~~~~~~d~~~Lp----fp~~sFD~I~ 113 (458)
=||=|.=+|+..|++......++++ .|..++..+ ..++.|..+.+ ..|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEE
Confidence 3677777888888886432445554 555443332 22333544443 34555553 3568899999
Q ss_pred ecccccccc-------cc-------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 114 CARCGVDWD-------QK-------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 114 ~~~~l~~~~-------~~-------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
-++- |.. .+ ...+++.+.++|+++|.+.++-....+ ...|+ ++.+++..++.++
T Consensus 81 FNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~-i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 81 FNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWN-IEELAAEAGLVLV 148 (166)
T ss_pred EeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Ccccc-HHHHHHhcCCEEE
Confidence 8753 322 01 125788899999999999998753322 12355 6688888888776
Q ss_pred Ee
Q 012709 180 SQ 181 (458)
Q Consensus 180 ~~ 181 (458)
..
T Consensus 149 ~~ 150 (166)
T PF10354_consen 149 RK 150 (166)
T ss_pred EE
Confidence 54
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 458 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 4e-09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 8e-09 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 3e-08 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-08 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 8e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-07 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 9e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 3e-06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 3e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 3e-06 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 4e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 4e-06 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 6e-06 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 7e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 7e-06 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 1e-05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 2e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 2e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 3e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 4e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 4e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 5e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 5e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 6e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 6e-05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 9e-05 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 1e-04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 1e-04 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 2e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-04 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 2e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 6e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 6e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 7e-04 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 9e-04 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 32/176 (18%), Positives = 53/176 (30%), Gaps = 41/176 (23%)
Query: 6 EEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK 65
+S A+ + + ++ ++ +R +G R +LD+GCG G L
Sbjct: 37 GADVSVDDAT------DRLTDEMIALLDVR-------SGDR-VLDVGCGIGKPAVRL--- 79
Query: 66 ELLTMCIANYEA-------SGSQV----QLTLERGLPAMI----GSFASKQLPYPSLSFD 110
+ S QV GL + LP+ SFD
Sbjct: 80 ------ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM--DLPFEDASFD 131
Query: 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 166
+ + L E+ RVL+PGG + KE +
Sbjct: 132 AVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRA 186
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 8e-09
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 25/132 (18%)
Query: 48 ILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGS 96
+LD+ CG G F L S++++ A A + + G A
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGVDISEDMIR--KAREYAKSRESNVEFIVG-DAR--- 95
Query: 97 FASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFV---WTSPLTNPQ 152
+L + +FD + V ++ + + EV RVLKP G F+ P+
Sbjct: 96 ----KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR 151
Query: 153 AFLRNKENQKRW 164
QK W
Sbjct: 152 LKESLVVGQKYW 163
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 34/115 (29%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--------------QLTLERGLPA 92
I DIGCG G TM +A QV + + GL
Sbjct: 49 LIADIGCGTGG----------QTMVLA--GHVTGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 93 MI----GSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
+ GS LP+ + D++ + + G L E + LK GGY
Sbjct: 97 RVTGIVGSMD--DLPFRNEELDLIWSEGAIYNIGFERG--LNEWRKYLKKGGYLA 147
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 23/127 (18%)
Query: 46 RTILDIGCGYGSFGAHLF------------SKELLTMCIANYEASGSQVQLTLERGLPAM 93
+T+LD G G +F S L + ++ +
Sbjct: 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNI--------S 76
Query: 94 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQ 152
G +LP+ S ++ + D + E+ RVLKPGG T +
Sbjct: 77 KGDIR--KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE 134
Query: 153 AFLRNKE 159
+ + ++
Sbjct: 135 RYNKGEK 141
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 41/163 (25%)
Query: 3 MLEEEQISFRSASLIFD---------GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGC 53
M E ++ + + D + I G+ T +DIG
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAG---------TCIDIGS 52
Query: 54 GYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ 101
G G+ L FSK + + + N + ++ + +G
Sbjct: 53 GPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG-DVH-------N 104
Query: 102 LPYPSLSFDMLHCARCGV-DWDQKDGILLLEVDRVLKPGGYFV 143
+P D++ R V W+ E+ R+LK GG
Sbjct: 105 IPIEDNYADLIVS-RGSVFFWEDVAT-AFREIYRILKSGGKTY 145
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 47 TILDIGCGYGS--------FGAHL----FSKELLTMCIANYEASGSQVQLTLERGLPAMI 94
I DIGCG G + + + + N + ++ G
Sbjct: 49 KIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG-SMD- 106
Query: 95 GSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
LP+ + D++ + + G + E + LK GG+
Sbjct: 107 ------NLPFQNEELDLIWSEGAIYNIGFERG--MNEWSKYLKKGGFIA 147
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 9e-07
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 26/158 (16%)
Query: 30 EMIGLRNESNFI--------LAGVRTILDIGCGYGSFGAHL------------FSKELLT 69
+ I +RN +NFI ++LD+GCG G ++ +
Sbjct: 42 KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN 101
Query: 70 MCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILL 129
+ ++ K+ S F + + I
Sbjct: 102 DARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYA----FSTSESLDIAQ 157
Query: 130 LEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFV 167
+ R L+PGGYF+ T P + L + + N
Sbjct: 158 RNIARHLRPGGYFIMTVP--SRDVILERYKQGRMSNDF 193
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 24/108 (22%)
Query: 47 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 95
+LD+GCG G L S+ ++ E L+ +G
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPD----LSFIKG-DLS-- 108
Query: 96 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
LP+ + F+ + ++ L E+ RVLK GY
Sbjct: 109 -----SLPFENEQFEAIMAINSLEWTEEPLRALN-EIKRVLKSDGYAC 150
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 38/115 (33%)
Query: 47 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 95
ILD+G G G + HL + L+ + + + G
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP------------SVTFHHG 91
Query: 96 SFASKQLPYPSLSFD-------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
+ L + ++H + D L+ + ++ GG +
Sbjct: 92 TIT--DLSDSPKRWAGLLAWYSLIHMGP----GELPD--ALVALRMAVEDGGGLL 138
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-06
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 32/158 (20%)
Query: 3 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGV---RTILDIGCGYGSFG 59
M ++++ + + + + + + A + E+ I A ILD GCG G G
Sbjct: 2 MTTWKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIG 61
Query: 60 AHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS 108
+L L+ ++ ++G +
Sbjct: 62 GYLSKQGHDVLGTDLDPILIDYAKQDFP------------EARWVVGDLSV--DQISETD 107
Query: 109 FDMLHCARCGVDW---DQKDGILLLEVDRVLKPGGYFV 143
FD++ + V + L + R L G V
Sbjct: 108 FDLI-VSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 28/158 (17%)
Query: 22 EDYSHQIAEMIG--LRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG 79
E+ E++ LR + R +LDIGCG G F + + ++ + + +
Sbjct: 18 EEKFRGSRELVKARLRRYIPYFKGC-RRVLDIGCGRGEFLELCKEEGIESIGV---DINE 73
Query: 80 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDML-------HCARCGVDWDQKDGILLLEV 132
++ E + P D + H ++ LL
Sbjct: 74 DMIKF-CEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL------DPERLFELLSLC 126
Query: 133 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 170
+K Y V SP NP + NF D
Sbjct: 127 YSKMKYSSYIVIESP--NPTSLY------SLINFYIDP 156
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 39 NFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA 98
I + +LDIGC G+ GA + I EA + E+ ++G
Sbjct: 27 KHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIE 83
Query: 99 SKQLPYPSLSFDMLHCARCGVDWD----QKD-GILLLEVDRVLKPGGYFVWTSPLTNPQA 153
+ +PY FD + D D ++ +V +K G + + P + +
Sbjct: 84 TMDMPYEEEQFDCVIF------GDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHIS 137
Query: 154 FL 155
L
Sbjct: 138 VL 139
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 46 RTILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQ-VQLTLERGLPA 92
I+D+GCG+G F S+++L A +G + L++
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDK---- 100
Query: 93 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV--WTSPLTN 150
L P SFD+ + + + L V + L PGG+FV P+
Sbjct: 101 ---------LHLPQDSFDLAYSSLALHYVEDVAR-LFRTVHQALSPGGHFVFSTEHPIYM 150
Query: 151 P---QAFLRNKENQKRWNFVRDFVE 172
+ + E ++ W R VE
Sbjct: 151 APARPGWAIDAEGRRTWPIDRYLVE 175
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 23/110 (20%)
Query: 47 TILDIGCGYGSFGAHL-------------FSKELLTMCIANYEASGSQVQLTLERGLPAM 93
+L+ GCG G+ L S E L N E +G + + +
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQA-NIF 97
Query: 94 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
LP+ SFD + + L + +VLKPGG
Sbjct: 98 -------SLPFEDSSFDHIFVCFVLEHLQSPEEA-LKSLKKVLKPGGTIT 139
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 27/192 (14%), Positives = 63/192 (32%), Gaps = 30/192 (15%)
Query: 16 LIFDGVEDYSHQIAEMIGLRNESNFI---LAGVRTILDIGCGYGSFGAHL---------- 62
+ ++ ++ + + ++ + + I DIGCG G+ L
Sbjct: 2 MAYEQFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVD 61
Query: 63 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFD---MLHCARCGV 119
S+E+L + + V + +LP P D +L + +
Sbjct: 62 LSEEMLEIAQEKAMETNRHVDFWV--------QDMRELELPEP---VDAITILCDSLNYL 110
Query: 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179
+ R+L GG ++ + +P + N K + + + +
Sbjct: 111 QTEADVKQTFDSAARLLTDGGKLLFD--VHSP-YKMETLFNGKTYATHAEQSSYIWFADP 167
Query: 180 SQQDETVVWKKT 191
++ +VV + T
Sbjct: 168 GEEPLSVVHELT 179
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 31/168 (18%)
Query: 16 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 64
+ DY +I E+N LD+ CG G+ +L S
Sbjct: 12 KLIRADVDYKKWSDFIIEKCVENN---LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLS 68
Query: 65 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV---DW 121
+E+L+ + + G + +L ++ + FD++ C
Sbjct: 69 QEMLSEAENKFRSQGLKPRLAC--------QDISNLNINRK---FDLITCCLDSTNYIID 117
Query: 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169
V LK GG F++ + + + N +N+ D
Sbjct: 118 SDDLKKYFKAVSNHLKEGGVFIFD--INSYYKLSQVLGNN-DFNYDDD 162
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPY 104
I DIG G G + L ++ L + E S Q + + G + L
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN--LAL 90
Query: 105 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW 164
P S D + + + E+ R+++ G + T + Q W
Sbjct: 91 PDKSVDGVISILAIHHFSHLEKSFQ-EMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLW 149
Query: 165 NFVRDFV 171
F+
Sbjct: 150 EDALRFL 156
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 42/276 (15%), Positives = 77/276 (27%), Gaps = 45/276 (16%)
Query: 16 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 64
I D + A ++GL + G +LD+ CG G L S
Sbjct: 34 YIGDTRSRTAEYKAWLLGLLRQ-----HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDAS 88
Query: 65 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV----- 119
++L A E + + ++ + + FD + C
Sbjct: 89 DKMLK--YALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD 146
Query: 120 -DWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177
DQ + L L + +++PGG V N L N + ++ +
Sbjct: 147 SKGDQSEHRLALKNIASMVRPGGLLVID--HRNYDYILSTGCAPPGKNI---YYKSDLTK 201
Query: 178 LVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIP 237
++ TV K Y+ + PG+G + Y
Sbjct: 202 DITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSY--------------YPHC 247
Query: 238 IEERRNWPSRANLNKNELAVYG-VHPEEFAEDTENW 272
+ A + + +V G P +
Sbjct: 248 LASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPC 283
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 47/158 (29%)
Query: 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGS--------FGAHLFSKELL 68
I + +A + + + + LD+G GYG FG +
Sbjct: 59 IREASLRTDEWLASELAMTGV---LQRQAK-GLDLGAGYGGAARFLVRKFGVSI------ 108
Query: 69 TMCIANYEASGSQV----QLTLERGLPAMI----GSFASKQLPYPSLSFD-------MLH 113
C+ + Q + + GL I GSF ++P S+D LH
Sbjct: 109 -DCLNI---APVQNKRNEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWSQDAFLH 162
Query: 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 151
D + + E RVLKP G T P+
Sbjct: 163 SP----DKLK----VFQECARVLKPRGVMAITDPMKED 192
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 26/162 (16%), Positives = 46/162 (28%), Gaps = 33/162 (20%)
Query: 7 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL---- 62
++++ S E+ S + R +L+ GCG+G A
Sbjct: 12 DRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTR-VLEAGCGHGPDAARFGPQA 70
Query: 63 -------FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS-FDMLHC 114
FS ELL + AN + LP + F ++
Sbjct: 71 ARWAAYDFSPELLKLARANAPHADVYEWNGKGE-------------LPAGLGAPFGLIVS 117
Query: 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 156
R +L + + P +F++ P N
Sbjct: 118 RRGPTSV-------ILRLPELAAPDAHFLYVGPRLNVPEVPE 152
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 46/341 (13%), Positives = 94/341 (27%), Gaps = 111/341 (32%)
Query: 166 FVRDFVENL-CWELVSQQDET-VVWKKTSKASCYSSRKPGSGP-----SICSKGNDVESP 218
F FV+N C ++ QD + K S+ SG ++ SK ++
Sbjct: 25 FEDAFVDNFDCKDV---QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--- 78
Query: 219 YYR----PLQPCIGGTRNRRWI--PIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENW 272
+ L+ N +++ PI+ + PS T +
Sbjct: 79 VQKFVEEVLRI------NYKFLMSPIKTEQRQPSM--------------------MTRMY 112
Query: 273 KTAVGNFWSLLSPLIFSDHP-KRPGDEDPSPPYNMVRNVLD------------MNAHFGG 319
++ +F+ + R PY +R L + G
Sbjct: 113 IEQRDRLYN--DNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDGV----LG 160
Query: 320 FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGL 379
GK+ ++V + + + + W ++ E L
Sbjct: 161 S-------GKTWVALDVCLSYK------VQCKMDFKIF--WLN-LKNCNSPETVL--EML 202
Query: 380 LSL------------ESGHRHRCSTLDIFTEIDRILR----PEGWVIIRD--TARLIE-- 419
L + + I E+ R+L+ +++ + A+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 420 --SARAL-TTRLKWDARVIEIESNSDERLLICQKPFFKRQA 457
S + L TTR K + + + L +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 29/151 (19%)
Query: 35 RNESNFILAGVR---TILDIGCGYGSFGAHLFSKELLTMCIANYEASG---SQVQLTL-- 86
R +F+ ++ +LD+G G G + + + +E S+ L +
Sbjct: 42 RLIGSFLEEYLKNPCRVLDLGGGTGKW-SLFLQE-------RGFEVVLVDPSKEMLEVAR 93
Query: 87 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV-----DWDQKDGILLLEVDRVLKPGGY 141
E+G+ ++ + A LP+PS +F+ + A V + D+ E+ RVL P G
Sbjct: 94 EKGVKNVVEAKAED-LPFPSGAFEAV-LALGDVLSYVENKDK----AFSEIRRVLVPDGL 147
Query: 142 FVWTSPLTNPQAFLRNKENQKRWNFVRDFVE 172
+ T N FL+ + W+ + F++
Sbjct: 148 LIATVD--NFYTFLQQMIEKDAWDQITRFLK 176
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 25/161 (15%)
Query: 10 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGV-RTILDIGCGYGSFGAHL------ 62
+ A+ +D + + ++A I S G L++G G G L
Sbjct: 4 ALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR 63
Query: 63 -----FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 117
+L + +VQ+ +P P S +
Sbjct: 64 YIALDADAAMLEVFRQKIAGVDRKVQVVQ--------ADAR--AIPLPDESVHGVIVVH- 112
Query: 118 GVDWDQKDGILLLEVDRVLKPGGYFV--WTSPLTNPQAFLR 156
+L E RVLKPGG + W +P+ L+
Sbjct: 113 LWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQ 153
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYP 105
IL++GCG G + + + S R G P F QL
Sbjct: 46 KILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLFH--QLDAI 100
Query: 106 SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFV 143
++D + C + + + +L + R LKPGG F
Sbjct: 101 D-AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 14/102 (13%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK--QLP 103
+T+LD+GCG+G + E + + S + + ++ +
Sbjct: 46 KTVLDLGCGFGWHCIYA--AEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA 103
Query: 104 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145
+++++ + + + + +V LK G F+++
Sbjct: 104 IEPDAYNVV-LSSLALHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 106
++IG G G F L K + + E S ++ +RG+ + G+ + LP
Sbjct: 50 RGVEIGVGTGRFAVPLKIK----IGV---EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 107 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 166
SFD + + L E R+LK GGY + ++N+++ F
Sbjct: 101 ESFDFALM-VTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 167 VRD 169
++
Sbjct: 160 YKN 162
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 5e-05
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 32/158 (20%)
Query: 34 LRNESNFILAGVRTILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASG 79
L N I V I+D GCGYG G L + LL +
Sbjct: 13 LVNTVWKITKPVH-IVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP 71
Query: 80 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPG 139
+ + G ++ +D+ C + +L ++ +K G
Sbjct: 72 YDSEF--------LEGDAT--EIELND-KYDIAIC-HAFLLHMTTPETMLQKMIHSVKKG 119
Query: 140 GYFV-----WTSPLTNPQAFLRNKENQKRWNFVRDFVE 172
G + W S + + + + ++ E
Sbjct: 120 GKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFE 157
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 34/160 (21%)
Query: 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYE 76
I G + + +I I L S +LDIG G G ++ Y
Sbjct: 36 ISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYI---------NEKYG 78
Query: 77 A-------SGSQVQLTLER-GLPAMI----GSFASKQLPYPSLSFDMLHC--ARCGVDWD 122
A + V + ER I +P +FD+++ A + +
Sbjct: 79 AHTHGIDICSNIVNMANERVSGNNKIIFEANDIL--TKEFPENNFDLIYSRDAILALSLE 136
Query: 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK 162
K+ L + + LKP G + T + ++ +
Sbjct: 137 NKNK-LFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEY 175
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-05
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---QL 102
LD G G G +L +K T + E ++ +G F
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDL--LEPVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 103 PYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 160
P ++D++ + D + + L P GY + + FL +KE+
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-05
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 41/114 (35%)
Query: 47 TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 95
I+D GCG G + +L + L ++ ++I
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKE---------------VKEKFDSVIT 64
Query: 96 SFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 143
S P S D H D D K ++ EV R+LK G +
Sbjct: 65 L--SDPKEIPDNSVDFILFANSFH------DMDDKQH-VISEVKRILKDDGRVI 109
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 9e-05
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 7 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE 66
E + R A L + I + R + +LDIGCG G +
Sbjct: 53 EMMQARRAFLDAGHYQPLRDAIVAQLRER-----LDDKATAVLDIGCGEGYYTHAFADAL 107
Query: 67 LLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124
+ S ++ +R + + S +LP+ S D + + K
Sbjct: 108 PEITTFG-LDVSKVAIKAAAKRYPQVTFCVASSH--RLPFSDTSMDAIIR----IYAPCK 160
Query: 125 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 156
E+ RV+KPGG+ + +P L+
Sbjct: 161 ----AEELARVVKPGGWVITATPGPRHLMELK 188
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 49/189 (25%)
Query: 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP 103
+ D GCG A + +A+ + + + Q+P
Sbjct: 67 ASLVVADFGCGDCRL-ASSIRNPVHCFDLASLDPRVTVCDMA---------------QVP 110
Query: 104 YPSLSFDMLHC--ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ 161
S D+ + G + L E +RVLKPGG E
Sbjct: 111 LEDESVDVAVFCLSLMGTNIRD----FLEEANRVLKPGGLLKVA-------------EVS 153
Query: 162 KRWNFVRDFVENLC---WELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESP 218
R+ VR F+ + +++VS+ + + +K GP + +
Sbjct: 154 SRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFL------FDFQKT--GPPLVGPKAQLSGL 205
Query: 219 YYRPLQPCI 227
LQPC+
Sbjct: 206 ---QLQPCL 211
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 25/113 (22%)
Query: 47 TILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASGSQVQLTLERGLPA 92
+ + CG+ S L + E L Q+TL R A
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ-DA 179
Query: 93 MIGSFASKQLPYPSLSFDMLHCARCG--VDWDQKDGILLLEVDRVLKPGGYFV 143
+L +D+L D + L + LKPGG V
Sbjct: 180 W-------KLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 16 LIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL-----------FS 64
+ +E +I + + E VR +LD+ CG G L
Sbjct: 15 IYRRRIERVKAEIDFVEEIFKEDA--KREVRRVLDLACGTGIPTLELAERGYEVVGLDLH 72
Query: 65 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD-WDQ 123
+E+L + + +++ + ++ + + FD + + +D+
Sbjct: 73 EEMLRVARRKAKERNLKIEFLQGD----V------LEIAFKN-EFDAVTMFFSTIMYFDE 121
Query: 124 KDGILLL-EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177
+D L +V LKPGG F+ P F ++ WN + + + +
Sbjct: 122 EDLRKLFSKVAEALKPGGVFI----TDFPCWFYGGRDGPVVWNEQKGEEKLVIMD 172
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 42 LAGVR---TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLE 87
A R +LDIG G G +KE++ + + + G + + +
Sbjct: 16 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE-NVRFQ 74
Query: 88 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV-DWDQKDGILLLEVDRVLKPGGYFV--- 143
+G A LP+P SFD++ C R + + EV RVLK G F+
Sbjct: 75 QG-TAE-------SLPFPDDSFDIITC-RYAAHHFSDVRKAVR-EVARVLKQDGRFLLVD 124
Query: 144 -WTSPLTNPQAFLRNKENQKRWNFVRDF 170
+ F+ + + + VR+
Sbjct: 125 HYAPEDPVLDEFVNHLNRLRDPSHVRES 152
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 22/156 (14%), Positives = 41/156 (26%), Gaps = 36/156 (23%)
Query: 46 RTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMI 94
+L+ G G G+ L S+E+ +
Sbjct: 47 GNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPK-----------EFSITE 95
Query: 95 GSFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148
G F S P+ S D H D + + + + ++L GG V+ +
Sbjct: 96 GDFLS--FEVPT-SIDTIVSTYAFHHLT-----DDEKNVAIAKYSQLLNKGGKIVFADTI 147
Query: 149 TNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 184
Q + +L E ++
Sbjct: 148 FADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPV 183
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 34/147 (23%)
Query: 20 GVEDYSHQIAEM--------IGLRNESNFILAGVR---TILDIGCGYGSFGAHL------ 62
G + H M G +A ++ +LD+ G G
Sbjct: 2 GSDKIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK 61
Query: 63 -----FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 117
++++L + A E +G Q Q+ +G A Q+P+ F ++ C R
Sbjct: 62 VVAFDLTEDILKVARAFIEGNGHQ-QVEYVQG-DAE-------QMPFTDERFHIVTC-RI 111
Query: 118 GV-DWDQKDGILLLEVDRVLKPGGYFV 143
+ + E RVLK GG +
Sbjct: 112 AAHHFPNPASFVS-EAYRVLKKGGQLL 137
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 38/150 (25%)
Query: 46 RTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERGLPAMI 94
+LD+GCG G L + L+ A
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQ-------- 105
Query: 95 GSFASKQLPYPSLSFD------MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV--WTS 146
++ +D L D + LL + +L PGG V
Sbjct: 106 ---LAEAKVPVGKDYDLICANFALL----HQDIIE----LLSAMRTLLVPGGALVIQTLH 154
Query: 147 PLTNPQAFLRNKENQKRWNFVRDFVENLCW 176
P + ++ ++ + + + W
Sbjct: 155 PWSVADGDYQDGWREESFAGFAGDWQPMPW 184
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 22/115 (19%)
Query: 42 LAGVRTILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERG 89
G LD G G G L +++ L G +V+ G
Sbjct: 77 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 136
Query: 90 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL-EVDRVLKPGGYFV 143
L + S+D++ + L L+P G V
Sbjct: 137 L---------QDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 182
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 19/128 (14%)
Query: 41 ILAGVRTILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLTLERG 89
+ ++D CG G+ L SK L IA E + + + L G
Sbjct: 53 LFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALE--IAAKENTAANISYRLLDG 110
Query: 90 L-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148
L P S+ H + ++++ L + +L G
Sbjct: 111 LVPEQAAQIHSEIGDANIYMRTGFHH----IPVEKREL-LGQSLRILLGKQGAMYLIELG 165
Query: 149 TNPQAFLR 156
T F
Sbjct: 166 TGCIDFFN 173
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 23/145 (15%)
Query: 42 LAGVR---TILDIGCGYGSFGAHL--------------FSKELLTMCIANYEASGSQVQL 84
G T+LD+GCG G L + E +
Sbjct: 78 ADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG 137
Query: 85 TLERG----LPAMIGSFAS-KQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPG 139
+ R L I + A+ + P S D++ K L E+ RVL+ G
Sbjct: 138 SPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLA-LFKEIHRVLRDG 196
Query: 140 GYFVWTSPLTNPQAFLRNKENQKRW 164
G ++ + + +++ +
Sbjct: 197 GELYFSDVYADRRLSEAAQQDPILY 221
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 22/164 (13%)
Query: 40 FILAGVR---TILDIGCGYGSFGAHL-----------FSKELLTMCIANYEASGSQVQLT 85
I ++ ILDIGCG G L + E + +A A +
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIR--LAETAARSPGLNQK 80
Query: 86 LERGLPAMIGSFASKQLPYPSLSFDMLHCA---RCGVDWDQKDGILLLEVDRVLKPGGYF 142
+ + + L + SFD D ++ I+ EV RVLKPG Y
Sbjct: 81 TGGKAEFKVEN--ASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIK-EVFRVLKPGAYL 137
Query: 143 VWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETV 186
N L K + ++ L + + + E +
Sbjct: 138 YLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFI 181
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 458 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.74 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.67 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.67 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.66 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.65 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.65 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.65 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.65 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.63 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.63 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.63 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.63 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.62 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.6 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.6 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.6 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.6 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.6 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.59 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.59 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.59 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.59 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.59 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.58 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.57 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.57 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.56 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.56 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.56 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.56 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.55 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.55 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.55 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.54 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.54 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.54 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.53 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.53 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.53 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.52 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.51 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.51 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.5 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.5 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.49 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.49 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.48 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.47 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.47 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.47 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.47 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.46 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.45 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.45 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.44 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.44 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.44 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.44 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.43 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.42 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.41 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.41 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.41 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.4 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.4 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.4 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.4 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.4 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.4 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.4 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.39 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.39 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.39 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.38 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.38 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.38 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.38 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.37 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.37 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.37 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.37 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.36 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.36 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.36 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.35 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.35 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.33 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.32 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.32 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.32 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.32 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.31 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.31 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.31 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.31 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.3 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.3 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.3 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.29 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.29 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.29 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.28 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.28 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.27 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.27 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.27 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.27 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.27 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.27 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.27 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.27 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.26 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.26 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.26 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.25 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.25 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.25 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.25 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.25 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.25 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.24 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.24 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.24 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.23 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.23 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.23 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.21 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.21 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.21 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.21 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.21 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.21 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.21 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.21 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.2 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.2 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.19 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.19 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.19 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.18 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.18 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.17 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.17 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.16 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.16 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.16 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.15 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.15 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.14 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.14 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.14 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.13 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.13 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.12 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.12 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.12 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.12 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.12 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.11 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.11 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.11 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.09 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.09 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.09 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.09 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.08 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.08 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.08 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.08 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.07 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.07 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.07 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.07 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.06 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.06 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.06 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.06 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.05 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.05 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.05 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.05 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.05 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.04 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.04 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.03 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.03 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.02 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.01 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.01 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.99 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.97 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.97 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.96 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.96 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.95 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.94 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.9 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.9 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.89 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.89 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.88 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.87 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.87 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.86 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.86 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.84 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.83 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.82 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.81 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.79 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.79 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.78 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.78 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.76 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.75 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.72 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.68 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.68 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.6 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.59 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.54 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.46 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.44 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.41 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.41 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.4 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.4 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.38 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.34 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.34 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.33 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.3 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.29 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.28 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.28 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.25 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.23 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.22 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.22 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.21 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.21 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.2 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.2 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.19 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.19 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.18 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.18 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.15 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.15 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.14 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.13 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.13 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.1 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.09 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.08 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.07 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.05 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.05 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.04 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.03 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.03 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.02 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.01 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.0 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.0 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.99 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.99 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.99 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.99 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.97 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.96 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.96 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.96 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.95 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.93 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.93 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.93 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.91 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.91 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.91 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.9 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.9 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.9 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.89 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.89 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.88 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.88 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.88 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.87 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.87 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.87 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.86 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.86 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.86 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.85 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.85 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.85 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.84 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.84 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.84 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.84 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.84 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.83 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.83 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.81 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.81 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.81 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.8 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.8 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.8 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.8 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.8 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.79 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.79 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.78 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.78 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.77 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.76 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.76 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.76 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.75 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.75 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.74 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.73 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.73 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.72 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.72 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.71 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.69 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.67 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.67 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.66 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.65 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.65 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.64 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.64 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.64 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.63 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.62 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.61 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.61 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.61 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.6 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.6 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.58 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.57 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.57 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.56 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.56 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.55 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.53 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.53 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.51 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.51 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.51 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.51 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.5 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.49 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.48 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.47 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 97.47 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.46 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.45 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.45 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 97.44 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.43 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 97.42 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.42 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.42 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.41 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.41 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.41 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.4 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.4 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.39 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.39 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.39 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.37 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.35 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.35 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.35 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.33 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.33 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.33 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.3 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.27 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.26 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 97.24 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.23 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.23 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.23 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.21 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.2 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.19 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.19 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.18 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.17 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.16 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.15 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 97.13 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 97.11 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.11 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.09 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 97.06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 97.06 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 97.04 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.02 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.01 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.01 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.01 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 96.98 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 96.94 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 96.93 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.92 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.89 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 96.89 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 96.87 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.86 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.86 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.85 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.83 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.83 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.81 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 96.81 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.78 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 96.77 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.74 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 96.73 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.73 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.69 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.68 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 96.67 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.67 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.66 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.66 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 96.65 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 96.63 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.6 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.59 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.58 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 96.54 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 96.51 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 96.51 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.51 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 96.5 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.48 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.48 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 96.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.4 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.39 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 96.39 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 96.36 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 96.35 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.34 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 96.32 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 96.29 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 96.26 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 96.21 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 96.2 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 96.12 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=163.88 Aligned_cols=128 Identities=18% Similarity=0.241 Sum_probs=96.0
Q ss_pred eccccccCccch-hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 10 SFRSASLIFDGV-EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 10 ~F~~~~~~fd~~-~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
+|.+.+..|+.+ ..|...+.+.+.... ....+|||||||+|.++..|++++. +|+|+|+|+.|++.|+++
T Consensus 10 ~F~~~a~~Y~~~Rp~yp~~l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~ 80 (257)
T 4hg2_A 10 HFTPVADAYRAFRPRYPRALFRWLGEVA------PARGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRH 80 (257)
T ss_dssp ----------CCCCCCCHHHHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhc
Confidence 577778888653 344445555554321 2346899999999999999998764 899999999999988754
Q ss_pred CCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 89 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 89 ~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.++.+.+++++.+|+++++||+|+|+.++ ||. ++.++++|+.|+|||||.|++.....
T Consensus 81 -~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 -PRVTYAVAPAEDTGLPPASVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp -TTEEEEECCTTCCCCCSSCEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -CCceeehhhhhhhcccCCcccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 58899999999999999999999999885 666 46789999999999999999987643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=146.13 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=111.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc-c
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-Q 123 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~-~ 123 (458)
..+|||+|||+|.++..+++++. +++++|+|+.|++.|+++..++.+..+|...+++++++||+|+|..+++|+. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence 46899999999999999999864 8999999999999999998889999999999999999999999999988886 3
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCccccccc---HHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN---KENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~---~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
+...+|+++.++|||||+++++.+.......... .......+++.+++++.+|+.+....
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 6678999999999999999999875532111100 00011235678889999999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=142.57 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=108.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-CeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+|||+|||+|.++..+++++. +++++|+|+.+++.|+++.. ++.+..+|...++++ ++||+|+|..+++++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCC
Confidence 456999999999999999998754 89999999999999999865 788999999999988 9999999999877776
Q ss_pred ccHHH--HHHHHHhcccCCcEEEEEeCCCCccccccc-------------HHHHH-----HHHHHHHHHHhhccEEEEee
Q 012709 123 QKDGI--LLLEVDRVLKPGGYFVWTSPLTNPQAFLRN-------------KENQK-----RWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 ~~~~~--~L~ei~RvLkPGG~liis~~~~~~~~~~~~-------------~e~~~-----~w~~i~~l~~~~~w~~v~~~ 182 (458)
++.. +|+++.++|||||++++.++.......... ..... .-+++.+++++.+|+.+...
T Consensus 121 -~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 121 -DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp -HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred -hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 4444 999999999999999999865422110000 00000 12678888999999888766
Q ss_pred eceEEE
Q 012709 183 DETVVW 188 (458)
Q Consensus 183 ~~~~iw 188 (458)
.....|
T Consensus 200 ~~~~~w 205 (220)
T 3hnr_A 200 LNHFVW 205 (220)
T ss_dssp CSSSEE
T ss_pred ccceEE
Confidence 543333
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=146.07 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=106.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-CeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+|||||||+|.++..+++.+. +++|+|+|+.+++.|+++.. ++.+..+|...+ +++++||+|+|..+++|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc
Confidence 346899999999999999998764 89999999999999998855 788888888887 5778999999999988876
Q ss_pred ccHHHHHHHHH-hcccCCcEEEEEeCCCCcccc--------cc-----cHHH-------HHHHHHHHHHHHhhccEEEEe
Q 012709 123 QKDGILLLEVD-RVLKPGGYFVWTSPLTNPQAF--------LR-----NKEN-------QKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 123 ~~~~~~L~ei~-RvLkPGG~liis~~~~~~~~~--------~~-----~~e~-------~~~w~~i~~l~~~~~w~~v~~ 181 (458)
++..+|+++. |+|||||+++++++....... .. .... ....+++.++++..+|+.+..
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 6788999999 999999999999976532100 00 0000 012357788889999988876
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
.
T Consensus 197 ~ 197 (250)
T 2p7i_A 197 S 197 (250)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=145.07 Aligned_cols=138 Identities=18% Similarity=0.103 Sum_probs=110.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++.+.+..+++++|+|+.+++.|+++ +. ++.+..+|...+++++++||+|+|+.++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 116 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTF 116 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCG
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhh
Confidence 456999999999999999998764556999999999999999876 33 6889999999999999999999999998
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+++. ++..+++++.++|||||+++++++.................+++..++++.+|+.+...
T Consensus 117 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 117 HELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp GGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred hhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 8775 67889999999999999999998654322111111122224677888999999987753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=151.49 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcC-CccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~-~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
.+..+|||+|||+|.++..|+++. .+..+|+|+|+|+.|++.|+++ + .++.+..+|+..+|++ .||+|+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceee
Confidence 345699999999999999998763 2456899999999999999887 2 3688999999988875 59999999
Q ss_pred ccccccccc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++++... ...+|++++|+|||||.|++++...
T Consensus 147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 987776533 2478999999999999999998644
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=143.97 Aligned_cols=135 Identities=19% Similarity=0.128 Sum_probs=108.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--CCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||||||+|.++..+++.+. +++++|+|+.+++.|+++ ..++.+..+|...+++++++||+|+|..+++|+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 456999999999999999999854 899999999999999988 457889999999999999999999999998877
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHH---------HHHHHHHHHHHHhhccEEEEee
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---------QKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~---------~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. ++..+++++.++|||||+++++++............. ...-.++..++++.+|+.+...
T Consensus 130 ~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 130 E-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp S-CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred c-CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 5 7788999999999999999999865532111000000 0112468888999999988755
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-15 Score=144.17 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=103.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..+++++. +++++|+|+.|++.|+++ + .++.+..+|...+|+++++||+|+|+.++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l 113 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA 113 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhh
Confidence 456999999999999999998763 899999999999998876 3 35889999999999999999999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccccc-HHH-----------HHHHHHHHHHHHhhccEEEEeee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN-KEN-----------QKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~-~e~-----------~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
+|+. ++..+|+++.|+|||||+++++++.......... ... ....+++..++++.+|+.+....
T Consensus 114 ~~~~-d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 189 (260)
T 1vl5_A 114 HHFP-NPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC 189 (260)
T ss_dssp GGCS-CHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred HhcC-CHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 7776 7788999999999999999998653211100000 000 00124567777888888766443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=144.27 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=90.8
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++.. ++.+..+|...++++ ++||+|+|..++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l 119 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSI 119 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcc
Confidence 3455799999999999999999874 45699999999999999998833 788999999999888 899999999998
Q ss_pred ccccccHH-HHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++.+... .+|+++.|+|||||+++++++..
T Consensus 120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 120 HHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 88753222 59999999999999999998654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=138.91 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+|||+|||+|.++..++++ +..+++++|+|+.+++.|+++ + .++.+..+|...+++++++||+|+|+.+++|
T Consensus 46 ~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 9999999999999999986 456999999999999999887 3 3688999999999999999999999998887
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccH---------------H--HHHHHHHHHHHHHhhccEEEEe
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK---------------E--NQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~---------------e--~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
+ .++..+|+++.++|||||++++++............ . ....-+++.+++++.+|+.+..
T Consensus 124 ~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 200 (219)
T 3dlc_A 124 W-EDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEI 200 (219)
T ss_dssp C-SCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEE
T ss_pred c-cCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEE
Confidence 7 477889999999999999999987544221000000 0 0011266788888999976653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-15 Score=142.87 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=106.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++ + .++.+..+|...+|+++++||+|+|..
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 45579999999999999999987 355999999999999999876 3 348999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHH----------HHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW----------NFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w----------~~i~~l~~~~~w~~v~~ 181 (458)
+++++ ++..+++++.++|||||+++++++..... .........| .++.+++++.+|+.+..
T Consensus 123 ~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 123 AIYNI--GFERGLNEWRKYLKKGGYLAVSECSWFTD--ERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp CGGGT--CHHHHHHHHGGGEEEEEEEEEEEEEESSS--CCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred Cceec--CHHHHHHHHHHHcCCCCEEEEEEeeecCC--CChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 98777 57889999999999999999998642111 1112222223 46777888888887754
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=146.30 Aligned_cols=100 Identities=9% Similarity=-0.063 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------------CCCeEEEeeccCCCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------------GLPAMIGSFASKQLPYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------------~~~~~~~~~d~~~Lpfp~ 106 (458)
...+|||+|||+|..+.+|++++. +|+|+|+|+.|++.|+++ ..++.+.++|+..+++++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 346999999999999999999865 899999999999999876 246889999999998876
Q ss_pred -CCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEe
Q 012709 107 -LSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 107 -~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~ 146 (458)
++||+|++..++++++.. ...+++++.|+|||||++++..
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 799999998887777643 3468999999999999844443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=147.70 Aligned_cols=133 Identities=15% Similarity=0.069 Sum_probs=104.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..+++.+ .+++|+|+|+.|++.|+++. ++.+..+|...+|+++++||+|+|..+++|+.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 108 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGVISILAIHHFS 108 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEEEEESCGGGCS
T ss_pred CCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEEEEcchHhhcc
Confidence 345799999999999999999854 49999999999999888776 89999999999999999999999999988874
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcc--ccc--ccHHHHH-------HHHHHHHHHHhhccEEEEee
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--AFL--RNKENQK-------RWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~--~~~--~~~e~~~-------~w~~i~~l~~~~~w~~v~~~ 182 (458)
++..+++++.|+|| ||++++.++..... .+. ...+... .-+.+. ++++.+|..+...
T Consensus 109 -~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~ 176 (261)
T 3ege_A 109 -HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAI 176 (261)
T ss_dssp -SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEE
T ss_pred -CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEE
Confidence 77889999999999 99988888754211 111 0111111 124566 8888888776644
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=136.40 Aligned_cols=130 Identities=16% Similarity=0.099 Sum_probs=102.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..+++.+. +++++|+++.+++.|+++..++.+...| +++++++||+|+|+.+++++.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~- 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD- 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS-
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc-
Confidence 446999999999999999998762 8999999999999999987788888887 778889999999999988775
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++..+++++.|+|||||++++.++.................+++.++++ +|+.+...
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 7788999999999999999999875532211111111112345666666 88877654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=142.98 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=91.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||+|||+|.++..+++.+.. +++++|+|+.+++.|+++. .++.+..+|+..+++++++||+|+|+.+++++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence 5579999999999999999998643 8999999999999999884 57889999999999999999999999987777
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.++..+|+++.++|||||+++++.+.
T Consensus 122 -~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 122 -ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 47789999999999999999998653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=139.37 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=89.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+|||+|||+|.++..+++++. +++++|+|+.+++.|++++ .++.+..+|...+ +++++||+|+|+.+++|+.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC
Confidence 446999999999999999998754 8999999999999999887 5788999999888 7889999999999888877
Q ss_pred cc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+. ...+|+++.++|||||.++++++..
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 43 2689999999999999999998754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=140.95 Aligned_cols=104 Identities=26% Similarity=0.392 Sum_probs=90.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..++++. ..+++++|+|+.+++.|+++ +. ++.+..+|...+|+++++||+|+|..
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALE 137 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEec
Confidence 345799999999999999998753 35999999999999998876 33 58899999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++|+. ++..+|+++.++|||||++++.++..
T Consensus 138 ~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 138 SLHHMP-DRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp CTTTSS-CHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred hhhhCC-CHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 988775 66889999999999999999998643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=139.48 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=104.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..+++.+. .+++++|+|+.+++.|+++ +. ++.+..+|...+|+++++||+|+|..
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 3456999999999999999998753 3899999999999998876 33 38899999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHH----------HHHHHHHHhhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW----------NFVRDFVENLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w----------~~i~~l~~~~~w~~v~ 180 (458)
+++|+ ++..+++++.++|||||+++++++..... .........| .++.+++++.+|+.+.
T Consensus 123 ~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 123 AIYNI--GFERGMNEWSKYLKKGGFIAVSEASWFTS--ERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp CSCCC--CHHHHHHHHHTTEEEEEEEEEEEEEESSS--CCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred hHhhc--CHHHHHHHHHHHcCCCcEEEEEEeeccCC--CChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 88777 57789999999999999999998532111 1112222222 4567778888888776
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=141.06 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=107.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
....+|||||||+|.++..++++. ..+++++|+|+.+++.|+++. .++.+..+|...+|+++++||+|+|..+++
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHH
Confidence 345699999999999999999863 348999999999999999985 578899999999999999999999999988
Q ss_pred ccc-ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH----------HHHHHHHHHHHhhccEEEEee
Q 012709 120 DWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ----------KRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~-~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~----------~~w~~i~~l~~~~~w~~v~~~ 182 (458)
|+. .+...+|+++.|+|||||++++.++......... .... ...+++..++++.+|+.+...
T Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 132 ALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD-DEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC-HHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred hcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch-HHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 874 3567899999999999999999986442211110 0000 012567777888888777644
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=142.36 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=105.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..+++.. ..+++++|+|+.|++.|+++ + .++.+..+|...+|+++++||+|+|..
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 345699999999999999999862 23899999999999998876 3 358899999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccc-cHHHHH--------HHHHHHHHHHhhccEEEEee
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR-NKENQK--------RWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~-~~e~~~--------~w~~i~~l~~~~~w~~v~~~ 182 (458)
+++|+. ++..+|+++.|+|||||+++++++......... ...... .-..+.+++++.+|+.+...
T Consensus 159 ~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 159 AFLHSP-DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp CGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhcC-CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 988887 578899999999999999999986442211100 000000 12456677888888877644
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=137.92 Aligned_cols=103 Identities=23% Similarity=0.336 Sum_probs=90.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||||||+|.++..+++.+. +++++|+|+.|++.|+++ + .++.+..+|...+|+++++||+|+|..+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence 3457999999999999999998763 899999999999998776 3 3688999999999999999999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++|+. ++..+|+++.|+|||||++++.++..
T Consensus 97 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 97 AHHFS-DVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred hhhcc-CHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 88876 67889999999999999999987643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=144.62 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=88.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
....+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++ ..++.+..+|...+++++++||+|+|+.++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 3457999999999999999998753 899999999999999987 357889999999999999999999999986
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
+++. +...+++++.++|||||++++.
T Consensus 115 ~~~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 6665 6788999999999999999998
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-15 Score=136.94 Aligned_cols=100 Identities=25% Similarity=0.271 Sum_probs=89.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..+ +. .+++++|+|+.|++.|+++..++.+..+|...+|+++++||+|+|..+++|+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 4579999999999999888 22 27999999999999999987778899999999999999999999999877776
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++..+++++.++|||||.++++++..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 77889999999999999999998754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=143.39 Aligned_cols=134 Identities=18% Similarity=0.168 Sum_probs=103.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC--CCCCCCeeEEEecccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L--pfp~~sFD~I~~~~~l~~ 120 (458)
....+|||||||+|.++..+++.+. +++|+|+|+.|++.|+++ +.+..+|...+ ++++++||+|+|..+++|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 3457999999999999999998764 799999999999999987 77777777765 888999999999999888
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeCCCCccccc----ccHH--HHHHHHHHHHHHHhhccEEEEee
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL----RNKE--NQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~----~~~e--~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+.. +...+++++.|+|||||++++..+........ .... ....-+.+..++++.+|+.+...
T Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 873 23689999999999999999998765321000 0000 00012567888888999876544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=140.49 Aligned_cols=138 Identities=19% Similarity=0.263 Sum_probs=107.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||||||+|.++..+++.. +..+++++|+|+.+++.|+++ +. ++.+...|...+++++++||+|+|+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 345799999999999999999873 456999999999999999876 33 688999999999999999999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc-ccHHHHHHH-----------------HHHHHHHHhhccEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-RNKENQKRW-----------------NFVRDFVENLCWELV 179 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-~~~e~~~~w-----------------~~i~~l~~~~~w~~v 179 (458)
+.++. ++..+++++.++|||||++++.++........ ........| .++..++++.+|+.+
T Consensus 115 l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v 193 (276)
T 3mgg_A 115 LEHLQ-SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKI 193 (276)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEE
T ss_pred hhhcC-CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeE
Confidence 77776 66789999999999999999988643211110 111111111 456677888888887
Q ss_pred Eee
Q 012709 180 SQQ 182 (458)
Q Consensus 180 ~~~ 182 (458)
...
T Consensus 194 ~~~ 196 (276)
T 3mgg_A 194 RVE 196 (276)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=151.51 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=107.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------C----CCeEEEeeccCCC------C
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------G----LPAMIGSFASKQL------P 103 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~----~~~~~~~~d~~~L------p 103 (458)
....+|||+|||+|.++..+++...+..+++|+|+|+.|++.|+++ | .++.+..+|+..+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 3557999999999999999988643456999999999999999987 4 5889999999887 8
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH----------HHHHHHHHHHHh
Q 012709 104 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ----------KRWNFVRDFVEN 173 (458)
Q Consensus 104 fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~----------~~w~~i~~l~~~ 173 (458)
+++++||+|+|+.+++++. ++..+|+++.|+|||||+|+++++.............. ..++++.+++++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 9999999999998877665 67899999999999999999987543211000000001 112678888999
Q ss_pred hccEEEEe
Q 012709 174 LCWELVSQ 181 (458)
Q Consensus 174 ~~w~~v~~ 181 (458)
.+|+.+..
T Consensus 241 aGF~~v~~ 248 (383)
T 4fsd_A 241 AGFRDVRL 248 (383)
T ss_dssp TTCCCEEE
T ss_pred CCCceEEE
Confidence 99986643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-15 Score=140.05 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
+..+|||||||+|.++..+++.. ..+++++|+|+.|++.|+++ +. ++.+..+|+..+++ +++||+|+|..+
T Consensus 36 ~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence 45699999999999999998863 34899999999999999776 33 58899999999988 789999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++++. ++..+|+++.|+|||||+++++++.
T Consensus 113 ~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 113 TWIAG-GFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp GGGTS-SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hHhcC-CHHHHHHHHHHHcCCCeEEEEecCc
Confidence 77776 6688999999999999999998863
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=142.23 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=107.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
....+|||||||+|.++..+++++. .+++++|+|+.+++.|+++. .++.+..+|...+++++++||+|+|..+++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence 3457999999999999999988753 37999999999999999885 357888899999999989999999999988
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEeCCCCccccccc---HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN---KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~---~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
|+.. +...+|+++.++|||||+++++++......+... ......-+++.+++++.+|+.+...
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 8863 4568999999999999999999863321111000 0001123567788888999887654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=134.42 Aligned_cols=136 Identities=23% Similarity=0.235 Sum_probs=106.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----C------CeEEEeeccCCCCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L------PAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~------~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
...+|||+|||+|.++..+++++. +++++|+|+.+++.|+++. . ++.+...+...+++++++||+|+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 456999999999999999999854 8999999999999999862 2 36788899999999999999999
Q ss_pred eccccccccccHH---HHHHHHHhcccCCcEEEEEeCCCCcccccccHH----------------------------HHH
Q 012709 114 CARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE----------------------------NQK 162 (458)
Q Consensus 114 ~~~~l~~~~~~~~---~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e----------------------------~~~ 162 (458)
|+.+++++. ++. .+++++.++|||||+++++++...+........ ...
T Consensus 107 ~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 107 MQAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred EcchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 999888876 444 799999999999999999987543211000000 001
Q ss_pred HHHHHHHHHHhhccEEEEeee
Q 012709 163 RWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 163 ~w~~i~~l~~~~~w~~v~~~~ 183 (458)
.-+++.+++++.+|+.+....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 235678888899998887543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-14 Score=141.09 Aligned_cols=137 Identities=16% Similarity=0.059 Sum_probs=107.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.++..++++. ..+++|+|+|+.+++.|+++ +. ++.+..+|...+|+++++||+|+|..
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE 193 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence 456799999999999999999872 24899999999999999876 43 58999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHH--HH--------HHHHHHHHHHhhccEEEEeee
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN--QK--------RWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~--~~--------~w~~i~~l~~~~~w~~v~~~~ 183 (458)
+++++ +...+|+++.|+|||||++++.++............. .. ..+++.+++++.+|+.+....
T Consensus 194 ~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~ 268 (312)
T 3vc1_A 194 STMYV--DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268 (312)
T ss_dssp CGGGS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEE
T ss_pred chhhC--CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 88877 3788999999999999999999864432110000000 00 125678888899998887654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=138.69 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=103.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..+++++. +++++|+|+.+++.|+++. ++.+..++...++ ++++||+|+|+.+++|+..
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 356999999999999999998754 8999999999999999873 4556677788888 7799999999999888763
Q ss_pred -cHHHHHHHHHhcccCCcEEEEEeCCCCccccccc--HHHHHHHHHHHHHHHhhc-cEEEEee
Q 012709 124 -KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN--KENQKRWNFVRDFVENLC-WELVSQQ 182 (458)
Q Consensus 124 -~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~--~e~~~~w~~i~~l~~~~~-w~~v~~~ 182 (458)
+...+|+++.++|||||+++++.+.......... .......+++.+++++.+ |+.+...
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 4458999999999999999999765432111000 000112356788888889 9888754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-15 Score=139.36 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=105.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-----CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..+++++ ..+++++|+|+.|++.|+++.. ++.+...|...+++++++||+|+|..++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 46799999999999999998875 3489999999999999988742 3678888988899888899999999988
Q ss_pred cccccc-HHHHHHHHHhcccCCcEEEEEeCCCCccc-ccc-cHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQA-FLR-NKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~-~~~-~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+++.+. ...+|+++.++|||||+++++++...... +.. ........+++.+++++.+|+.+...
T Consensus 157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 887642 23799999999999999999886432100 000 00001124567788888899887754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=144.53 Aligned_cols=134 Identities=8% Similarity=-0.042 Sum_probs=98.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------------------CCeEEEeeccCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------------LPAMIGSFASKQ 101 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----------------------~~~~~~~~d~~~ 101 (458)
...+|||+|||+|..+.+|+++|. +|+|+|+|+.|++.|+++. .++.+.++|+..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 446999999999999999999876 8999999999999997653 467899999999
Q ss_pred CCCCC-CCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 102 LPYPS-LSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 102 Lpfp~-~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
+++++ ++||+|++..++++++.. ...+++++.|+|||||++++.+....... ...+.....-+++.+++.. +|+++
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-HAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-CCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-CCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 98764 899999998888777643 34799999999999999976543211100 0000000113556677765 47776
Q ss_pred Eee
Q 012709 180 SQQ 182 (458)
Q Consensus 180 ~~~ 182 (458)
...
T Consensus 223 ~~~ 225 (252)
T 2gb4_A 223 CLE 225 (252)
T ss_dssp EEE
T ss_pred EEe
Confidence 644
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=141.07 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=91.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||+|||+|.++..++++. +..+++++|+|+.|++.|+++..++.+..+|...++ ++++||+|+|+.+++++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 109 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVP 109 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGST
T ss_pred CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCC
Confidence 345689999999999999999873 345899999999999999998778899999999988 788999999999866664
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++..+|+++.++|||||+++++.+..
T Consensus 110 -~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 110 -DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp -THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred -CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 77889999999999999999998643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=141.64 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=105.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC-CCCCCeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP-YPSLSFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp-fp~~sFD~I~~~~~ 117 (458)
..+|||||||+|.++..+++.+. +++|+|+|+.|++.|+++ + .++.+..+|...++ +++++||+|+|..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 56999999999999999998754 899999999999999886 3 35788999998887 78899999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc--------------c-------cHHHHHHHHHHHHHHHhhcc
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL--------------R-------NKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~--------------~-------~~e~~~~w~~i~~l~~~~~w 176 (458)
++|+. ++..+|+++.++|||||++++..+........ . ........+++..++++.+|
T Consensus 146 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 224 (285)
T 4htf_A 146 LEWVA-DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW 224 (285)
T ss_dssp GGGCS-CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred hhccc-CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence 77775 67889999999999999999988633110000 0 00000112578888899999
Q ss_pred EEEEeee
Q 012709 177 ELVSQQD 183 (458)
Q Consensus 177 ~~v~~~~ 183 (458)
+.+....
T Consensus 225 ~v~~~~~ 231 (285)
T 4htf_A 225 QIMGKTG 231 (285)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9887554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=141.17 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=89.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..+++.+ .+++|+|+|+.|++.|+++..++.+..+|...+|+ +++||+|+|+.+++++.
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcchhhhCc
Confidence 345699999999999999999844 48999999999999999987778899999999987 58999999999866665
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++..+|+++.|+|||||++++..+..
T Consensus 132 -d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 132 -EPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 77889999999999999999988754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=133.61 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC----------CeEEEeeccCCCCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----------PAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~----------~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
...+|||||||+|.++..+++++ +..+++++|+|+.+++.|+++.. ++.+..+|...+++++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 45699999999999999999875 34699999999999999988722 68899999888888889999999
Q ss_pred eccccccccccH-HHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~ 147 (458)
|..++.|+.... ..+++++.++|||||.++.+..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 999988886322 5899999999999996666543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=139.00 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=90.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||||||+|.++..+++.+. +++++|+|+.|++.|+++... .+..+|...+++++++||+|+|..+++|+..
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 456999999999999999998754 899999999999999988653 3788889899999999999999988888866
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++..+|+++.++|||||++++..+.
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 7889999999999999999999863
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=136.11 Aligned_cols=131 Identities=15% Similarity=0.027 Sum_probs=102.3
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC------CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL------PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~------~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+|||+|||+|.++..+++.+ .+++++|+|+.+++.|+++.. ++.+..+|...++ ++++||+|+|+.+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 599999999999999998754 489999999999999988733 3889999998877 456999999999888
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++.. +...+++++.++|||||++++............. .....+++.++++..+|+.+...
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP--YKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSS--CCCCHHHHHHHHGGGTEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCC--ccCCHHHHHHHHHHcCCeEEEEE
Confidence 7753 4568999999999999999998865432110000 01123567888899999887654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=140.05 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=90.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
....+|||||||+|.++..+++......+++|+|+|+.+++.|+++ +.++.+..+|+..++++ ++||+|+|..++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~l 99 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 99 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-CCeeEEEECChh
Confidence 4557999999999999999998642246999999999999999876 34788999999999885 699999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.++. ++..+++++.++|||||++++.++.
T Consensus 100 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 7775 6788999999999999999999986
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=137.30 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=88.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecc-cccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR-CGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~-~l~~~~ 122 (458)
...+|||||||+|.++..+++++. +++|+|+|+.|++.|+++..++.+..+|+..+++ +++||+|+|.. ++.|+.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSC
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcC
Confidence 347999999999999999998864 8999999999999999997789999999999888 68999999998 877775
Q ss_pred --ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 --QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 --~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+...+|+++.++|||||++++...
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2455899999999999999999753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=133.51 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
....+|||+|||+|.++..+++.+ .+++++|+|+.+++.|+++. .++.+..+|...++ ++++||+|+|+.+++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 345699999999999999999875 38999999999999999874 36789999998888 678999999999988
Q ss_pred cccccH--HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~--~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.+.. ..+++++.++|||||+++++.+..
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 877322 478999999999999999988643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=132.86 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC----------CeEEEeeccCCCCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----------PAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~----------~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
...+|||||||+|.++..+++++ +..+++++|+|+.+++.|+++.. ++.+..+|...+++++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 44699999999999999999865 34589999999999999988721 68889999887787778999999
Q ss_pred ecccccccccc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+.+++|+... ...+++++.++|||||.++++..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 99998887532 15899999999999997777654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=142.37 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=88.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-------CCCeEEEeeccCCCCCCC------CCee
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPS------LSFD 110 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-------~~~~~~~~~d~~~Lpfp~------~sFD 110 (458)
...+|||||||+|.++..+++...+..+++|+|+|+.|++.|+++ ..++.+..+|+..+++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 457999999999999999996321355999999999999999886 458899999999998887 8999
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+|+|+.+++++ ++..+++++.++|||||++++..
T Consensus 116 ~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 116 MITAVECAHWF--DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp EEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999987776 78899999999999999999954
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=141.70 Aligned_cols=101 Identities=20% Similarity=0.340 Sum_probs=87.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCCC---CCCCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLP---YPSLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~Lp---fp~~sFD~ 111 (458)
+..+|||||||+|.++..|++.+. +++|+|+|+.|++.|+++. .++.+..++...++ +++++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 457999999999999999999865 8999999999999998752 35678888888887 88899999
Q ss_pred EEec-cccccccc------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCA-RCGVDWDQ------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~-~~l~~~~~------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|. .+++|+.+ +...+|+++.++|||||++++..+
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9998 78788774 156899999999999999999986
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=131.40 Aligned_cols=103 Identities=20% Similarity=0.152 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCchhH-HHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFG-AHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~-~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++ ..++..+ .+++++|+|+.|++.|+++ +.++.+..+|+..+++++++||+|+|..++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 3469999999999984 4555544 3899999999999998875 567888999999999988999999999888
Q ss_pred cccc-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~-~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+|+. .+...+++++.++|||||++++.++..
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 8874 356689999999999999999998644
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=128.20 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=99.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++ +. ++.+..+|...+++ +++||+|+|+.++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchh
Confidence 346999999999999999998754 899999999999998875 43 68889999988888 7899999999988
Q ss_pred ccccc-cHHHHHHHHHhcccCCcEEEEEeCCCCcccccc-cHHHHHHHHHHHHHHHhhccEEEEeeec
Q 012709 119 VDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR-NKENQKRWNFVRDFVENLCWELVSQQDE 184 (458)
Q Consensus 119 ~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~-~~e~~~~w~~i~~l~~~~~w~~v~~~~~ 184 (458)
+++.. +...+++++.++|||||++++.++......... .......-+++.++++. |+.+.....
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 77753 456899999999999999888764332111000 00000112455666665 887775443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-15 Score=143.96 Aligned_cols=104 Identities=16% Similarity=0.093 Sum_probs=78.1
Q ss_pred CCCCEEEEECCCCchhHHHH----hhcCCccce--EEEEcCCHHHHHHHHHc-----CC-CeE--EEeeccCCCC-----
Q 012709 43 AGVRTILDIGCGYGSFGAHL----FSKELLTMC--IANYEASGSQVQLTLER-----GL-PAM--IGSFASKQLP----- 103 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~L----a~~~~~~~~--v~gvD~S~~~i~~A~er-----~~-~~~--~~~~d~~~Lp----- 103 (458)
.+..+|||||||+|.++..+ +.++ +... ++++|+|++|++.|+++ ++ ++. +..++...++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 34469999999999766543 3322 3344 49999999999999876 22 233 3444444433
Q ss_pred -CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 104 -YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 104 -fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++++||+|+|+.+++|+. ++..+|+++.|+|||||++++....
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6789999999999977776 7788999999999999999998653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=133.18 Aligned_cols=133 Identities=19% Similarity=0.133 Sum_probs=100.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC---CCCC-CCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPS-LSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L---pfp~-~sFD~I~~~~~l~ 119 (458)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++ ....+...+...+ ++.. ++||+|+|+.+++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 347999999999999999998754 899999999999999998 4566666666555 5444 4599999998866
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc------------c-------cHHHHHHHHHHHHHHHhhccEEEE
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL------------R-------NKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~------------~-------~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..++..+++++.++|||||+++++++........ . ........+++.+++++.+|+.+.
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 5577889999999999999999998755221100 0 000011236778888999998886
Q ss_pred ee
Q 012709 181 QQ 182 (458)
Q Consensus 181 ~~ 182 (458)
..
T Consensus 206 ~~ 207 (227)
T 3e8s_A 206 LQ 207 (227)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-14 Score=132.50 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=101.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||+|.++..++.+ +++|+|+.+++.|+++ ++.+..++...+++++++||+|+|..++.++. +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-D 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-C
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-C
Confidence 569999999999999998764 8999999999999988 57788888888999889999999999877765 6
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCCccccc---------c--cHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 125 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFL---------R--NKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 125 ~~~~L~ei~RvLkPGG~liis~~~~~~~~~~---------~--~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+..+|+++.++|+|||+++++.+........ . ........+++.+++++.+|+.+...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 7889999999999999999998754211000 0 00000123678888999999887654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=124.64 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=101.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEec-ccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA-RCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~-~~l~~~~ 122 (458)
...+|||+|||+|.++..+++.+. +++++|+++.+++.|+++..++.+...|...+++++++||+|+++ .++.+..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 456999999999999999998754 899999999999999998778899999998888888999999998 5555543
Q ss_pred c-cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 123 Q-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 ~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. +...+++++.++|+|||++++..+.... ...+++...++..+|+.+...
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~----------~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRG----------WVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSS----------CCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCC----------cCHHHHHHHHHHcCCEEeeee
Confidence 2 3358999999999999999998764321 113456677778888876543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=133.00 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=89.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--CeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||||||+|.++..+++++. .+++++|+|+.+++.|+++.. ++.+..+|...+++++++||+|+|..+++++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEecccccc
Confidence 457999999999999999998753 289999999999999998853 5788899998899888999999999987777
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. +...+|+++.++|||||+++++.+
T Consensus 121 ~-~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 121 E-DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp S-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 5 678899999999999999999885
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=140.06 Aligned_cols=139 Identities=13% Similarity=0.083 Sum_probs=105.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----C--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..++....+..+++++|+|+.+++.|+++. . ++.+..+|...++++ ++||+|+|+.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 34579999999999999999644446679999999999999998873 2 288999999999988 9999999999
Q ss_pred ccccccccHH--HHHHHHHhcccCCcEEEEEeCCCCcc-----ccc---ccHHHH------------------HHHHHHH
Q 012709 117 CGVDWDQKDG--ILLLEVDRVLKPGGYFVWTSPLTNPQ-----AFL---RNKENQ------------------KRWNFVR 168 (458)
Q Consensus 117 ~l~~~~~~~~--~~L~ei~RvLkPGG~liis~~~~~~~-----~~~---~~~e~~------------------~~w~~i~ 168 (458)
+++|+.+... .+++++.++|||||++++++...... .|. ...... ...+++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 8888764333 47999999999999999988654211 010 001000 1246778
Q ss_pred HHHHhhccEEEEee
Q 012709 169 DFVENLCWELVSQQ 182 (458)
Q Consensus 169 ~l~~~~~w~~v~~~ 182 (458)
+++++.+|+.+...
T Consensus 276 ~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 276 AQLEEAGFTDLRFE 289 (305)
T ss_dssp HHHHHTTCEEEEEE
T ss_pred HHHHHCCCEEEEEE
Confidence 88899999887754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=129.33 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=99.3
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++ +.++.+..+|...+++++++||+|+|+. .|+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCC
Confidence 999999999999999998754 899999999999999876 5688899999999998889999999964 4443
Q ss_pred -ccHHHHHHHHHhcccCCcEEEEEeCCCCccccc----ccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 123 -QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL----RNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 -~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~----~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.+...+++++.++|||||++++..+......+. ........-+++.++++ +|+.+...
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEE
Confidence 345689999999999999999998765332110 00011112356666666 88877654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=149.13 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=102.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEE---EeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI---GSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~---~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
...+|||||||+|.++..+++++. +++|+|+|+.|++.|++++.+... ...+...+++++++||+|+|..+++|
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGG
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHh
Confidence 456999999999999999998765 899999999999999998665432 23345556777899999999999888
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCCCc-------ccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNP-------QAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~~~-------~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+. ++..+|+++.|+|||||++++..+.... .............+.+..++++.+|+.+...
T Consensus 184 ~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 184 IP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp CT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred cC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence 87 7889999999999999999998764210 0000000000113568888999999887654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=131.69 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=86.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++ +.++.+..+|...+++++++||+|+|+.++++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 56999999999999999998764 899999999999999876 46789999999998888899999999987333
Q ss_pred cc-ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WD-QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~-~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. .+...+++++.++|||||++++.++
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 32 2456899999999999999999986
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=130.86 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=87.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecc-cc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR-CG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~-~l 118 (458)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++ +.++.+..+|...++++ ++||+|+|+. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccc
Confidence 456999999999999999998764 899999999999999876 34788999999888887 8899999998 88
Q ss_pred cccc--ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWD--QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~--~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+. .+...+|+++.++|||||++++..+
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8874 3556899999999999999999775
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=134.21 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..+++.. ..+++|+|+|+.+++.|+++ + .++.+...|...+| ++||+|+|..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~ 137 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIG 137 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeC
Confidence 345699999999999999998542 23899999999999999887 2 36788888887765 7899999999
Q ss_pred cccccc-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~-~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++|+. .+...+|+++.|+|||||++++.++..
T Consensus 138 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 138 AFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp CGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred chhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 988886 366789999999999999999988654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=132.48 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=87.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecc-cccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR-CGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~-~l~~~~ 122 (458)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++..++.+..+|...+++ +++||+|+|+. +++|+.
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCC
T ss_pred CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcC
Confidence 456999999999999999998764 8999999999999999987788999999988887 68899999755 666664
Q ss_pred --ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 --QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 --~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+...+|+++.++|||||++++..+..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 244589999999999999999987543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-14 Score=137.24 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=86.1
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C----CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+|||||||+|.++..|++++. +++++|+|+.|++.|+++ + .++.+..+|+..+++ +++||+|+|+..
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSG 159 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHH
T ss_pred CcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCc
Confidence 4899999999999999999864 899999999999999887 2 468899999999988 689999998755
Q ss_pred ccccccc--HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++... ...+|+++.++|||||+|++..+..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 5665542 3589999999999999999998765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=133.97 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
...+|||+|||+|.++..+++++. +++++|+|+.+++.|+++ +.++.+..+|...+++ +++||+|+|+.+++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchh
Confidence 456999999999999999999864 899999999999988776 5588999999988887 78999999999888
Q ss_pred ccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 120 DWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 120 ~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|+... ...+++++.++|||||++++....
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 77533 348999999999999998886643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=128.23 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=103.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC--CCCCCCCeeEEEecccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ--LPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~--Lpfp~~sFD~I~~~~~l~~ 120 (458)
....+|||+|||+|.++..+++.+ .+++++|+|+.+++.|+++.. .+...|... +++++++||+|+|+.+++|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLEH 105 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGGG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhhh
Confidence 345799999999999999999874 489999999999999998753 566677665 6788899999999998877
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCCCcc---------ccccc------HH--HHHHHHHHHHHHHhhccEEEEeee
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ---------AFLRN------KE--NQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~---------~~~~~------~e--~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
+. ++..+++++.++|+|||+++++.+..... .+... .. .....+++.+++++.+|+.+....
T Consensus 106 ~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 106 LF-DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp SS-CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 76 66789999999999999999998754211 00000 00 001235677888888988776543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-14 Score=129.03 Aligned_cols=104 Identities=24% Similarity=0.289 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
...+|||+|||+|.++..+++.+.. +++++|+|+.+++.|+++. .++.+..+|...+++++++||+|+++.++.+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 3468999999999999999987643 8999999999999999874 4688889999999998899999999877654
Q ss_pred cc--------------ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 121 WD--------------QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 121 ~~--------------~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.. .+...+++++.++|||||.+++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 43 234689999999999999999998743
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=125.44 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCC-CCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP-YPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lp-fp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++++ .+|+|+|+|+.|++.|+++ + .++.+...+...++ +++++||+|+++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 45699999999999999999874 4899999999999999876 3 36777776666643 55788999998733
Q ss_pred cccc--------cccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~--------~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.++. ......+++++.++|||||++++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 2322 123347899999999999999998764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=134.41 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=85.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
.+..+|||||||+|.++..++++ + .+++|+|+|+.|++.|+++ +. ++.+..+|...+ +++||+|+|.
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~ 144 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSL 144 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEE
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEc
Confidence 34569999999999999999987 4 4899999999999999877 33 578888888766 6899999999
Q ss_pred ccccccccc--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++|+.+. ...+++++.++|||||++++.+...
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 998888532 2589999999999999999988754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=119.46 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=94.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++.+ +..+++++|+|+.+++.|+++ +. ++.+..+|........++||+|++..++
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 118 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSG 118 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCT
T ss_pred CCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCC
Confidence 45799999999999999999875 456999999999999999876 33 5788888875544334779999998753
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
. +...+++++.++|||||++++..... ...+.+.+.+++.+|.....
T Consensus 119 ~----~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~l~~~g~~~~~~ 165 (204)
T 3e05_A 119 G----MLEEIIDAVDRRLKSEGVIVLNAVTL------------DTLTKAVEFLEDHGYMVEVA 165 (204)
T ss_dssp T----CHHHHHHHHHHHCCTTCEEEEEECBH------------HHHHHHHHHHHHTTCEEEEE
T ss_pred c----CHHHHHHHHHHhcCCCeEEEEEeccc------------ccHHHHHHHHHHCCCceeEE
Confidence 3 56789999999999999999987521 23455667777888843333
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-14 Score=138.37 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=78.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC-------eEEEeecc------CCC--CCC
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-------AMIGSFAS------KQL--PYP 105 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~-------~~~~~~d~------~~L--pfp 105 (458)
..+|||||||+|..+..++..+. .+|+|+|+|+.|++.|+++ +.. +.+.+.+. ..+ +++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 57999999999976666665442 3899999999999999887 221 34556655 222 467
Q ss_pred CCCeeEEEeccccccc-c-ccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 106 SLSFDMLHCARCGVDW-D-QKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 106 ~~sFD~I~~~~~l~~~-~-~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++||+|+|..++++. . .+...+|+++.|+|||||+|+++.+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999999886543 2 24468999999999999999999863
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-14 Score=133.73 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCC--CCCCCCeeEEEe---
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL--PYPSLSFDMLHC--- 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~L--pfp~~sFD~I~~--- 114 (458)
.+.+|||||||+|..+.++++.. ..+++++|+|+.|++.|+++ +.++.+..+++..+ ++++++||.|++
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45699999999999999998864 34899999999999999886 44566777665543 578899999975
Q ss_pred --ccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 115 --ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 115 --~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.....|.. +...+++++.|+|||||+|++..
T Consensus 138 ~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhc-chhhhhhhhhheeCCCCEEEEEe
Confidence 33334443 55689999999999999998864
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=116.98 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++ +.. +.+...|... ++++++||+|+++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~ 127 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP 127 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECC
Confidence 45699999999999999999873 4899999999999999876 433 7888888766 45568899999987
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.+++.......+++++.++|+|||.+++..+.
T Consensus 128 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 128 PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 64442345568999999999999999999873
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-13 Score=124.14 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=96.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|+++ + .++.+..+|+..++ +++++||+|+++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 34689999999999999999864 466999999999999998876 4 36889999988877 7788999999986
Q ss_pred ccccccc--------cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 117 CGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 117 ~l~~~~~--------~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. .+|.. ....++.++.++|||||.+++..... ...+.+.+.+...+|..+...
T Consensus 120 ~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------------~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 120 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR------------GLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH------------HHHHHHHHHHHHHTCEEEEEE
T ss_pred C-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH------------HHHHHHHHHHHHCCCeeeecc
Confidence 4 33322 12469999999999999999986411 122445556666688776543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=135.19 Aligned_cols=137 Identities=17% Similarity=0.090 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---------------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--------------------------------- 90 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--------------------------------- 90 (458)
...+|||||||+|.+...++... ..+|+|+|+|+.|++.|+++..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 45799999999999554444422 3489999999999998877411
Q ss_pred --CeEEEeeccCC-CCC-----CCCCeeEEEeccccccccc---cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccH-
Q 012709 91 --PAMIGSFASKQ-LPY-----PSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK- 158 (458)
Q Consensus 91 --~~~~~~~d~~~-Lpf-----p~~sFD~I~~~~~l~~~~~---~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~- 158 (458)
.+.+..+|+.. +|+ ++++||+|+|+.++++... +...+|+++.|+|||||+|+++.............
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 03455567776 664 4567999999998777433 46789999999999999999985322110000000
Q ss_pred --HHHHHHHHHHHHHHhhccEEEEee
Q 012709 159 --ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 159 --e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.....-+++.+++++.+|+.+...
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEee
Confidence 001123567788888899887644
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-14 Score=132.08 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCC--CCCCCCeeEEEe-cc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQL--PYPSLSFDMLHC-AR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~L--pfp~~sFD~I~~-~~ 116 (458)
...+|||||||+|.++..+++.+ ..+++++|+|+.|++.|+++. .++.+..+|...+ ++++++||+|++ ..
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 34699999999999999997754 238999999999999998873 5678888888888 899999999999 54
Q ss_pred cccccc----ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWD----QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~----~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ +.. .....+++++.|+|||||+|++.+.
T Consensus 138 ~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 43 221 1223679999999999999998764
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=130.06 Aligned_cols=117 Identities=18% Similarity=0.329 Sum_probs=94.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc-CCCCCC-CCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYP-SLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~-~~Lpfp-~~sFD~I~~~~~l~~~ 121 (458)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++..++.+..+|. ..+|++ +++||+|+|+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 446999999999999999998753 89999999999999999977899999998 678888 8999999987
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
.++..+++++.++|||||+++...... ..+.+...+...+|..+....
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRL-------------NVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSS-------------CCTHHHHHHHHTTCEEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcC-------------CHHHHHHHHHHCCCeEEEEEe
Confidence 244568999999999999999332211 123456677778888776443
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-13 Score=126.71 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=84.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecc-ccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR-CGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~-~l~ 119 (458)
..+|||+|||+|.++..+++. .+++++|+|+.+++.|+++ +.++.+..+|...++++ ++||+|+|.. ++.
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 369999999999999999886 3899999999999999876 45788899998888876 8899999986 767
Q ss_pred ccc--ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWD--QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~--~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+. .+...+++++.++|||||.+++..+
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 764 2345799999999999999999775
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=122.33 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 96 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~ 96 (458)
....+.+.+.+.... .....+|||+|||+|.++..+++++. .+++++|+|+.|++.|+++ +. ++.+..
T Consensus 27 ~~~~~~l~~~l~~~~-----~~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~ 99 (189)
T 3p9n_A 27 DRVRESLFNIVTARR-----DLTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRR 99 (189)
T ss_dssp HHHHHHHHHHHHHHS-----CCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE
T ss_pred HHHHHHHHHHHHhcc-----CCCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 444445555554321 12456999999999999998887653 4899999999999999876 43 688888
Q ss_pred eccCCCC--CCCCCeeEEEeccccccccccHHHHHHHHHh--cccCCcEEEEEeCCC
Q 012709 97 FASKQLP--YPSLSFDMLHCARCGVDWDQKDGILLLEVDR--VLKPGGYFVWTSPLT 149 (458)
Q Consensus 97 ~d~~~Lp--fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~R--vLkPGG~liis~~~~ 149 (458)
+|+..++ +++++||+|+++..+.+...+...++.++.+ +|+|||.+++.....
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred ccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 8877653 4578999999987644433456789999999 999999999987643
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-13 Score=126.34 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+..+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++ +.++.+..+|...++++ ++||+|+|..+.+
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTI 116 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCch
Confidence 457999999999999999998764 899999999999999876 55788999999888876 6899999875434
Q ss_pred ccc--ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWD--QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~--~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++. .+...+++++.++|||||.+++..+
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 432 2345899999999999999998765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=132.12 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=86.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCC-CCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPY-PSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpf-p~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|+++ + .++.+..+|...+++ ++++||+|+|..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45699999999999999988764 34899999999999999887 2 247888999988888 678999999998
Q ss_pred ccccc---cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDW---DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~---~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++++. ..+...+|+++.++|||||++++..+
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 86552 23456899999999999999999986
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=127.77 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=85.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHH------HHHHHHHc----C--CCeEEEeec---cCCCCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS------QVQLTLER----G--LPAMIGSFA---SKQLPYPSL 107 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~------~i~~A~er----~--~~~~~~~~d---~~~Lpfp~~ 107 (458)
....+|||||||+|.++..++++..+..+++++|+|+. |++.|+++ + .++.+..+| ...+|++++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 34579999999999999999987423469999999997 89988876 2 357888887 556678889
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 108 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+||+|+|..+++|+. ++..+++.+.++++|||++++.+...
T Consensus 122 ~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp CCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999999988776 45567777777777899999988654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-14 Score=137.11 Aligned_cols=137 Identities=15% Similarity=0.022 Sum_probs=95.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------C---------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------L--------------------------- 90 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~--------------------------- 90 (458)
...+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++. .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 446899999999988887777654 37999999999999987641 0
Q ss_pred -Ce-EEEeeccCCC-CC---CCCCeeEEEeccccccccc---cHHHHHHHHHhcccCCcEEEEEeCCCCccccccc---H
Q 012709 91 -PA-MIGSFASKQL-PY---PSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN---K 158 (458)
Q Consensus 91 -~~-~~~~~d~~~L-pf---p~~sFD~I~~~~~l~~~~~---~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~---~ 158 (458)
.+ .+..+|.... |+ ..++||+|+|+.++++... +...+++++.|+|||||+|++++........... .
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 11 2667777663 44 3578999999999887643 3458999999999999999999753321100000 0
Q ss_pred HHHHHHHHHHHHHHhhccEEEEee
Q 012709 159 ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 159 e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
...-.-+++.+.+.+.+|+.+...
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEe
Confidence 000113467788888899877654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.9e-13 Score=124.07 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
...+|||||||+|.++..|++.. +..+++|+|+|+.+++.|+++ +. ++.+..+|+..++ +++++||.|++..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 34689999999999999999864 567999999999999998875 43 6889999988776 7788999999865
Q ss_pred cccccccc--------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~--------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .+|... ...+++++.++|||||.+++...
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 4 333321 25689999999999999999874
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.8e-13 Score=127.05 Aligned_cols=159 Identities=12% Similarity=-0.012 Sum_probs=106.4
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeE
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAM 93 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~ 93 (458)
.|...+.+...++..+....+.+. ..++.+|||+|||+|.++.++++.-.+..+|+++|+|+.|++.++++. .++.
T Consensus 51 e~r~w~p~rsklaa~i~~gl~~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~ 129 (233)
T 4df3_A 51 EYREWNAYRSKLAAALLKGLIELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIF 129 (233)
T ss_dssp EEEECCTTTCHHHHHHHTTCSCCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEE
T ss_pred eeeeECCCchHHHHHHHhchhhcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCee
Confidence 443334555556665544333333 344579999999999999999987556789999999999999988763 3566
Q ss_pred EEeeccCC---CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHH
Q 012709 94 IGSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 170 (458)
Q Consensus 94 ~~~~d~~~---Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l 170 (458)
...++... .++..+++|+|++.. +.+.+...++.++.++|||||+++++.............+ ..++..+.
T Consensus 130 ~V~~d~~~p~~~~~~~~~vDvVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~---~~~~ev~~ 203 (233)
T 4df3_A 130 PILGDARFPEKYRHLVEGVDGLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE---VYKREIKT 203 (233)
T ss_dssp EEESCTTCGGGGTTTCCCEEEEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH---HHHHHHHH
T ss_pred EEEEeccCccccccccceEEEEEEec---cCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH---HHHHHHHH
Confidence 66665543 456778999999753 3334567899999999999999999864331111111111 12333444
Q ss_pred HHhhccEEEEee
Q 012709 171 VENLCWELVSQQ 182 (458)
Q Consensus 171 ~~~~~w~~v~~~ 182 (458)
++..+|+.+...
T Consensus 204 L~~~GF~l~e~i 215 (233)
T 4df3_A 204 LMDGGLEIKDVV 215 (233)
T ss_dssp HHHTTCCEEEEE
T ss_pred HHHCCCEEEEEE
Confidence 566788776643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-13 Score=130.73 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..+++.. ..+++++|+|+.+++.|+++ + .++.+..+|...+| ++||+|+|..
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~ 163 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE 163 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES
T ss_pred CCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeC
Confidence 345699999999999999999862 23899999999999999887 3 24788888887775 7899999999
Q ss_pred cccccc-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~-~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++|+. .+...+++++.++|||||++++.++..
T Consensus 164 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 164 AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 988885 366789999999999999999998754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-13 Score=128.14 Aligned_cols=98 Identities=22% Similarity=0.353 Sum_probs=85.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..+++.. +..+++++|+|+.+++.|+++..++.+...|...+|+++++||+|+++.+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence 345699999999999999999863 345899999999999999999888899999999999999999999987541
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++++.|+|||||.++++++..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 25899999999999999998744
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-12 Score=119.03 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=92.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC-eEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~-~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++.+ ..+++++|+|+.+++.|+++ +.. +.+..+|... +.+++||+|+++..+
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA--DVDGKFDLIVANILA 135 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESCH
T ss_pred CCCEEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc--cCCCCceEEEECCcH
Confidence 44699999999999999998864 34899999999999999876 443 7888887755 346899999998654
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.+ ...+++++.++|||||++++++... ...+.+.+.+.+.+|+.+...
T Consensus 136 ~~----~~~~l~~~~~~L~~gG~l~~~~~~~------------~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 136 EI----LLDLIPQLDSHLNEDGQVIFSGIDY------------LQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp HH----HHHHGGGSGGGEEEEEEEEEEEEEG------------GGHHHHHHHHHHTTEEEEEEE
T ss_pred HH----HHHHHHHHHHhcCCCCEEEEEecCc------------ccHHHHHHHHHHcCCceEEee
Confidence 33 3568999999999999999986522 123456677778888877643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-13 Score=131.82 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------------------------- 89 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------------------------------- 89 (458)
...+|||||||+|.++..++++. +..+|+|+|+|+.|++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 45799999999999999999863 3459999999999999998862
Q ss_pred -----------------------------CCeEEEeeccCCCC-----CCCCCeeEEEecccccccc-----ccHHHHHH
Q 012709 90 -----------------------------LPAMIGSFASKQLP-----YPSLSFDMLHCARCGVDWD-----QKDGILLL 130 (458)
Q Consensus 90 -----------------------------~~~~~~~~d~~~Lp-----fp~~sFD~I~~~~~l~~~~-----~~~~~~L~ 130 (458)
.++.+..+|....+ +.+++||+|+|..++.+++ ....++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 25777777766543 5778999999998865542 13457999
Q ss_pred HHHhcccCCcEEEEEeC
Q 012709 131 EVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 131 ei~RvLkPGG~liis~~ 147 (458)
++.++|||||+|++...
T Consensus 205 ~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHEEEEEEEEEECC
T ss_pred HHHHHhCCCcEEEEecC
Confidence 99999999999999764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=130.15 Aligned_cols=101 Identities=11% Similarity=0.005 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCC-----CCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY-----PSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpf-----p~~sFD~I~~~~~ 117 (458)
....+|||||||+|.++..|++++. +|+++|+|+.|++.|+++.... +...+...++. .+++||+|+|+.+
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~ 119 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAGHFDFVLNDRL 119 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEESC
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCCCccEEEEhhh
Confidence 3456999999999999999999865 8999999999999999884322 22333333333 2578999999998
Q ss_pred cccccc-cHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++|+.. +...+++++.++| |||+++++...
T Consensus 120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 120 INRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 888753 3457999999999 99999999863
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-12 Score=114.43 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccC-CCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK-QLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~-~Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++ +. ++ +...+.. .++..+++||+|+++.
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence 44699999999999999999864 467999999999999999876 33 35 5556653 3333338899999998
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++.+ ..+++++.++|||||++++...
T Consensus 103 ~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 103 GLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp -TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred cccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 7555 4589999999999999999886
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=124.77 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=92.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC---CCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp---~~sFD~I~~~ 115 (458)
...+|||||||+|.++..++... +..+|+++|+|+.|++.|+++ +. ++.+..+|+..++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 45699999999999999998642 356899999999999998775 44 588888888877764 5789999987
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
.+ .+...+++++.++|||||++++..... . . ....++...++..++.....
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~------~-~---~~~~~~~~~l~~~g~~~~~~ 199 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALKAAS------A-E---EELNAGKKAITTLGGELENI 199 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEECC-------C-H---HHHHHHHHHHHHTTEEEEEE
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEeCCC------c-h---HHHHHHHHHHHHcCCeEeEE
Confidence 52 356789999999999999999875321 1 1 12344556667778876543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-13 Score=121.19 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..++++..+..+++++|+++.+++.|+++ + .++.+..+|+..++ +.+++||+|+++.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 346999999999999999998632345899999999999999877 3 36889999988775 6668999999986
Q ss_pred cccccc--------ccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~--------~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.++... .+...+++++.++|||||++++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 542211 12347999999999999999998753
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=127.68 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=99.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--C------------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P------------------------------ 91 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~------------------------------ 91 (458)
...+|||+|||+|.++..+++.+. .+++++|+|+.|++.|+++.. +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 446899999999999999987653 489999999999999987621 1
Q ss_pred --e-EEEeeccCCCC-CCC---CCeeEEEeccccccccc---cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccH---
Q 012709 92 --A-MIGSFASKQLP-YPS---LSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--- 158 (458)
Q Consensus 92 --~-~~~~~d~~~Lp-fp~---~sFD~I~~~~~l~~~~~---~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~--- 158 (458)
+ .+..+|....+ +++ ++||+|+|+.++++... +...+|+++.++|||||++++.+............
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 5 78888887763 355 89999999998774432 45689999999999999999988543210000000
Q ss_pred HHHHHHHHHHHHHHhhccEEEEee
Q 012709 159 ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 159 e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.....-+.+..++.+.+|+.+...
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEE
Confidence 000112467788888899887654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-12 Score=117.05 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=89.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++++ .+|+++|+++.+++.|+++ +. ++.+..+|.........+||+|++...
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG 131 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred CCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence 45699999999999999999874 4899999999999999876 43 588888888773223357999998764
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+ +.. +++++.++|||||+++++.... ....++.+.+++.+++...
T Consensus 132 ~-----~~~-~l~~~~~~LkpgG~lv~~~~~~------------~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 132 G-----SQA-LYDRLWEWLAPGTRIVANAVTL------------ESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp C-----CHH-HHHHHHHHSCTTCEEEEEECSH------------HHHHHHHHHHHHHCSEEEE
T ss_pred c-----cHH-HHHHHHHhcCCCcEEEEEecCc------------ccHHHHHHHHHhCCCcEEE
Confidence 2 445 9999999999999999988621 2234455556666666554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-13 Score=128.83 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=86.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--CeEEEeeccCCCCCCC-----CCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPS-----LSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~~~~~~~d~~~Lpfp~-----~sFD~I~~~ 115 (458)
....+|||+|||+|.++..|++.+. +|+++|+|+.|++.|+++.. ++.+..+|...++++. ..||+|+|+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 3446899999999999999998764 89999999999999998743 6888888887765432 249999999
Q ss_pred cccccccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++++.. +...+++++.++|||||++++.++..
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 88777653 45689999999999999999988744
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=123.10 Aligned_cols=98 Identities=20% Similarity=0.124 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH----HHHHcCCCeEEEeeccCC----CCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMIGSFASKQ----LPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~----~A~er~~~~~~~~~d~~~----Lpfp~~sFD~I~~~ 115 (458)
+..+|||+|||+|.++..+++... ..+|+|+|+|+.|++ .|+++ .++.+..+|+.. .+++ ++||+|+|+
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 456999999999999999988642 458999999998654 44443 467777777765 3555 789999997
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .. +.....+++++.|+|||||+|+++.+
T Consensus 134 ~-~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 134 I-AQ--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp C-CS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cC--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 2 12 22234569999999999999999853
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-12 Score=112.87 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=95.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++. ..+++++|+++.+++.|+++ + .++.+..+|... ++++++||+|+++.+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKR---CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTT---SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC-
T ss_pred CCCEEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc-
Confidence 4469999999999999999983 45999999999999999876 3 367888888766 677789999999876
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeeeceEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKK 190 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K 190 (458)
.+...+++++.++ |||.+++..+.. ....++.+.++..+|+..........+++
T Consensus 110 ----~~~~~~l~~~~~~--~gG~l~~~~~~~------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 163 (183)
T 2yxd_A 110 ----KNIEKIIEILDKK--KINHIVANTIVL------------ENAAKIINEFESRGYNVDAVNVFISYAKK 163 (183)
T ss_dssp ----SCHHHHHHHHHHT--TCCEEEEEESCH------------HHHHHHHHHHHHTTCEEEEEEEEEEEEEE
T ss_pred ----ccHHHHHHHHhhC--CCCEEEEEeccc------------ccHHHHHHHHHHcCCeEEEEEeeeehhhc
Confidence 4667899999999 999999998622 12344566677777877665544444443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-12 Score=118.79 Aligned_cols=125 Identities=17% Similarity=0.087 Sum_probs=94.1
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCC-CCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-PYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~L-pfp~~sFD~I~~~~~ 117 (458)
...+|||+||| +|.++..+++.. ..+++++|+++.+++.|+++ +.++.+..+|...+ ++++++||+|+|+..
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 45799999999 999999999873 34899999999999999876 55788888886543 566789999999865
Q ss_pred cccccc------------------cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 118 GVDWDQ------------------KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 118 l~~~~~------------------~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
+++... ....+++++.++|||||++++..+.. . ...+++.+.+++.+|...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~---~~~~~~~~~l~~~g~~~~ 201 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK--------E---KLLNVIKERGIKLGYSVK 201 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC--------H---HHHHHHHHHHHHTTCEEE
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc--------H---hHHHHHHHHHHHcCCceE
Confidence 433221 12578999999999999999986522 1 223556677777888665
Q ss_pred Ee
Q 012709 180 SQ 181 (458)
Q Consensus 180 ~~ 181 (458)
..
T Consensus 202 ~~ 203 (230)
T 3evz_A 202 DI 203 (230)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=117.27 Aligned_cols=116 Identities=10% Similarity=0.003 Sum_probs=90.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||+|.++..+++++ +++|+|+|+.|++. ..++.+..+|+.. ++++++||+|+|+..+++....
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcc
Confidence 4599999999999999999875 89999999999988 4467788888876 6777899999998775543322
Q ss_pred --------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 125 --------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 125 --------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
...++.++.+.| |||.++++.+.. ..-+++.+++++.+|+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------NRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------GCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------CCHHHHHHHHHHCCCcEEEEE
Confidence 246889999999 999999987522 113456677788888876644
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=122.53 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=90.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..++ .+++++|+|+. ++.+..+|...+++++++||+|+|+.++ |+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~- 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG- 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-
T ss_pred CCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhc-cc-
Confidence 345689999999999998884 27999999987 4567788888899999999999999886 44
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.+...+|+++.++|+|||+++++++.... ...+++..+++..+|+.+...
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----------~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSSRF----------EDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGGGC----------SCHHHHHHHHHHTTEEEEEEE
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCCCC----------CCHHHHHHHHHHCCCEEEEEe
Confidence 57789999999999999999999863211 123566778888899887643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=125.97 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C--CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P--YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p--fp~~sFD~I~~~ 115 (458)
...+|||||||+|.++..+++.. +...|+|+|+|+.|++.|+++ +. ++.+..+|+..+ + +++++||.|+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 44699999999999999999864 567899999999999988766 33 688998887774 3 788999999987
Q ss_pred cccccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
+. .+|.... ..+++++.|+|||||+|++++.
T Consensus 113 ~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 113 FP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp SC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 4444322 2499999999999999999875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=130.72 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC--CCCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL--PYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L--pfp~~sFD~I~~ 114 (458)
.+..+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ + .++.+..+|.... |+| ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 355799999999999999999864 5679999999 9999999886 2 2588899988775 577 78999999
Q ss_pred ccccccccccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..++++|.+.. ..+|+++.++|||||++++.+...
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 99988887543 478999999999999999998755
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=126.38 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=93.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEE-eeccCCCC---CCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG-SFASKQLP---YPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~-~~d~~~Lp---fp~~sFD~I~~~~~l 118 (458)
....+|||+|||||.++..|++++. .+|+|+|+|+.|++.+.++..++... ..++..++ ++..+||+|+|..++
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSF 161 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSS
T ss_pred ccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeH
Confidence 3456999999999999999998753 48999999999999877665554332 22333332 344569999998765
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC---Cc-----ccccccHH-HHHHHHHHHHHHHhhccEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT---NP-----QAFLRNKE-NQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~---~~-----~~~~~~~e-~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
++. ..+|.++.|+|||||++++...+. .. .+..+++. +...-+++..++...+|....-
T Consensus 162 ~sl----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 162 ISL----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp SCG----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hhH----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 543 558999999999999999974321 11 11222232 2334577888888999987653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=140.70 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------C-CCeEEEeeccCCCCCCCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------G-LPAMIGSFASKQLPYPSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------~-~~~~~~~~d~~~Lpfp~~sFD~I 112 (458)
...+|||||||+|.++..|++.+.+..+|+|+|+|+.|++.|+++ + .++.+..+|+..+++++++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 457999999999999999998763345999999999999999872 2 36889999999999999999999
Q ss_pred EeccccccccccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+|..+++|+.+.. ..+++++.|+|||| .++++++..
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9999988887432 26899999999999 888888644
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-12 Score=124.84 Aligned_cols=106 Identities=12% Similarity=0.015 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCC---chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCC-----------CC
Q 012709 43 AGVRTILDIGCGY---GSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLP-----------YP 105 (458)
Q Consensus 43 ~~~~~VLDVGCG~---G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lp-----------fp 105 (458)
.+.++|||||||+ |.++..+.+. .+..+|+++|+|+.|++.|+++. .++.+..+|+...+ ++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 3457999999999 9887666554 35569999999999999998872 46888888876421 33
Q ss_pred CCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 106 SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 106 ~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..+||+|+++.+++++.+. ...+|+++.++|||||+|++++...
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 3589999999987777753 6789999999999999999998644
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=122.58 Aligned_cols=102 Identities=21% Similarity=0.193 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------C-CCeEEEeeccCC-CC--CCCCCe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------G-LPAMIGSFASKQ-LP--YPSLSF 109 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------~-~~~~~~~~d~~~-Lp--fp~~sF 109 (458)
...+|||||||+|.++..|++.. +...++|+|+|+.|++.|+++ + .++.+..+|+.. ++ +++++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 34589999999999999999864 567899999999999988643 2 368899999876 66 788999
Q ss_pred eEEEecccccccccc--------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~~~~~--------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|.|++... .+|... ...+++++.++|||||.|++...
T Consensus 125 D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99997643 333211 13699999999999999999874
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=123.09 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=101.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ + .++.+..+|.. .++|. +||+|+|..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 34799999999999999999864 5678999999 9999999875 3 36889988886 46665 8999999999
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH----------HHHHHHHHHHHhhccEEEEe
Q 012709 118 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ----------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 118 l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~----------~~w~~i~~l~~~~~w~~v~~ 181 (458)
+++|.++ ..++|+++.++|||||++++.+........ ...... ...+++.+++++.+|+.+..
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHA-GTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---C-CHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCc-cHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 8888854 358999999999999999999875532200 000000 11356778888889887754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=130.10 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------------CCeEEEeeccCCCC----CC--
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQLP----YP-- 105 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------------~~~~~~~~d~~~Lp----fp-- 105 (458)
...+|||+|||+|.++..+++.+ ..+++++|+|+.|++.|+++. .++.+..+|...++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 45699999999999999998753 458999999999999998762 25788889988876 64
Q ss_pred CCCeeEEEecccccccccc---HHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 SLSFDMLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 ~~sFD~I~~~~~l~~~~~~---~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++||+|+|+.++++...+ ...+|+++.++|||||+++++.+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 4589999999875554122 35899999999999999999986
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=112.06 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCC-CCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPS-LSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~-~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++ +. ++.+...|... ++++ ++||+|++..
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGG 108 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECC
Confidence 44699999999999999999876 4899999999999999875 33 67777777655 3333 5899999987
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
++. +...+++++.++|+|||.+++..+.. ....++.+.+.+.+|+...
T Consensus 109 ~~~----~~~~~l~~~~~~l~~gG~l~~~~~~~------------~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 109 SGG----ELQEILRIIKDKLKPGGRIIVTAILL------------ETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp CTT----CHHHHHHHHHHTEEEEEEEEEEECBH------------HHHHHHHHHHHHTTCCCEE
T ss_pred chH----HHHHHHHHHHHhcCCCcEEEEEecCc------------chHHHHHHHHHHCCCceEE
Confidence 643 34679999999999999999987621 1234556667777774433
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-12 Score=129.35 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=86.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
...+|||+|||+|.++..+++++. +|+++|+|+.+++.|+++ +..+.+...|....+.++++||+|+|+..++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 446999999999999999999854 899999999999999876 5578899999988877778999999997755
Q ss_pred cc----cccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 120 DW----DQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 120 ~~----~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+. ......+++++.++|||||.++++...
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 41 234458999999999999999998763
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=119.07 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=80.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCC--CCCCC-eeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--YPSLS-FDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lp--fp~~s-FD~I~~ 114 (458)
..+|||+|||+|.++..++.++. .+|+++|+|+.|++.|+++ +. ++.+..+|+..+. +++++ ||+|++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 36999999999999998777653 4899999999999999876 43 6888888876643 24678 999999
Q ss_pred ccccccccccHHHHHHHH--HhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei--~RvLkPGG~liis~~~~ 149 (458)
... ++ ......+++++ .|+|||||.++++....
T Consensus 132 ~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 876 33 33456788888 78899999999988644
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=124.85 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=80.7
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..++.+|||||||+|.++..++.+. +..+|+++|++++|++.|+++ +. ++.+..+|+..+| +++||+|++..
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a 196 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAA 196 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred CCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECC
Confidence 3556899999999998775544332 356999999999999999887 43 6888999988765 68999999864
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ..+..++++++.|+|||||++++...
T Consensus 197 ~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 197 L----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp T----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred C----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 3 34667899999999999999999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-12 Score=125.29 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=101.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..++++. +..+++++|++ .+++.|+++ +. ++.+..+|....+++++ ||+|+|..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcc
Confidence 345799999999999999999864 55699999999 999998876 33 48899999887777755 99999999
Q ss_pred cccccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHH-H-------------HHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN-Q-------------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~-~-------------~~w~~i~~l~~~~~w~~v~~ 181 (458)
+++++.+. ...+|+++.++|+|||++++.++............. . ...+++.+++++.+|+.+..
T Consensus 241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 98888633 358999999999999999999876532111100000 0 01345677777888876653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=120.12 Aligned_cols=137 Identities=16% Similarity=0.129 Sum_probs=94.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH----HH----cCC-CeEEEeeccCCCCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LE----RGL-PAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A----~e----r~~-~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
...+|||+|||+|.++..|+++. +..+++|+|+|+.|++.+ ++ ++. ++.+..+|+..+|+++++ |.|+.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 34689999999999999999863 567999999999988853 22 132 688999999999998777 87774
Q ss_pred ccccc----cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccc------cccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 115 ARCGV----DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF------LRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 115 ~~~l~----~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~------~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
..... ++..++..+++++.|+|||||.++++.....+... .........-+.+..++...+|+.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence 32111 12234467999999999999999997532211100 0000011112347788889999887654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=119.46 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCC-HHHHHHH---HHc----CC-CeEEEeeccCCCCCC-CCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS-GSQVQLT---LER----GL-PAMIGSFASKQLPYP-SLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S-~~~i~~A---~er----~~-~~~~~~~d~~~Lpfp-~~sFD~I~ 113 (458)
...+|||||||+|.++..|+++. +..+|+|+|+| +.|++.| +++ +. ++.+..+++..+|.. .+.+|.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 34689999999999999998653 46789999999 7777776 543 33 588999999888632 25566666
Q ss_pred ecccc----ccccccHHHHHHHHHhcccCCcEEEEEeCCCCccc---------ccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 114 CARCG----VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA---------FLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 114 ~~~~l----~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~---------~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
++... .+...+...+|+++.|+|||||++++......... ........ .-.++...+.+.+|+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~el~~~l~~aGf~v~~ 181 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYF-LSEQYKAELSNSGFRIDD 181 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHH-HSHHHHHHHHHHTCEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhc-chHHHHHHHHHcCCCeee
Confidence 54321 11112234689999999999999999432221100 00001110 112477888889998876
Q ss_pred ee
Q 012709 181 QQ 182 (458)
Q Consensus 181 ~~ 182 (458)
..
T Consensus 182 ~~ 183 (225)
T 3p2e_A 182 VK 183 (225)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=119.10 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=97.9
Q ss_pred ccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHH----HHHHHcCCCeE
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAM 93 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i----~~A~er~~~~~ 93 (458)
|+..+.+...++..+....+.+. ..+..+|||+|||+|.++.++++...+..+|+++|+|+.|+ +.|+++ .++.
T Consensus 51 yr~w~~~~skla~~ll~~l~~~~-l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~ 128 (232)
T 3id6_C 51 YREWNAFRSKLAGAILKGLKTNP-IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIF 128 (232)
T ss_dssp EEECCTTTCHHHHHHHTTCSCCS-CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEE
T ss_pred hhhhchHHHHHHHHHHhhhhhcC-CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeE
Confidence 54455666677766654433222 23457999999999999999988644566999999999875 344444 5788
Q ss_pred EEeeccCCCC---CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHH
Q 012709 94 IGSFASKQLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 170 (458)
Q Consensus 94 ~~~~d~~~Lp---fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l 170 (458)
+..+|+.... ...++||+|++... . +.....++..+.++|||||+|+++.............+ ..+.....
T Consensus 129 ~i~~Da~~~~~~~~~~~~~D~I~~d~a-~--~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e---~~~~~~~~ 202 (232)
T 3id6_C 129 PLLADARFPQSYKSVVENVDVLYVDIA-Q--PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE---IYKTEVEK 202 (232)
T ss_dssp EEECCTTCGGGTTTTCCCEEEEEECCC-C--TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS---STTHHHHH
T ss_pred EEEcccccchhhhccccceEEEEecCC-C--hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH---HHHHHHHH
Confidence 8888876532 12468999998743 2 32223345566779999999999864321100111111 12233444
Q ss_pred HHhhccEEEEee
Q 012709 171 VENLCWELVSQQ 182 (458)
Q Consensus 171 ~~~~~w~~v~~~ 182 (458)
+++.+|+.+...
T Consensus 203 L~~~gf~~~~~~ 214 (232)
T 3id6_C 203 LENSNFETIQII 214 (232)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHCCCEEEEEe
Confidence 455578777644
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-12 Score=120.54 Aligned_cols=122 Identities=18% Similarity=0.071 Sum_probs=92.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC---CCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp---~~sFD~I~~~ 115 (458)
...+|||||||+|..+..|+... +..+|+++|+|+.++++|+++ +. ++.+..++++.++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 45799999999999999998753 567999999999999999876 44 588888888877643 4789999987
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
.+ .+...++.++.++|||||++++..... . .....++...++..+++....
T Consensus 159 a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~------~----~~e~~~~~~~l~~~G~~~~~~ 209 (249)
T 3g89_A 159 AV-----APLCVLSELLLPFLEVGGAAVAMKGPR------V----EEELAPLPPALERLGGRLGEV 209 (249)
T ss_dssp SS-----CCHHHHHHHHGGGEEEEEEEEEEECSC------C----HHHHTTHHHHHHHHTEEEEEE
T ss_pred Cc-----CCHHHHHHHHHHHcCCCeEEEEEeCCC------c----HHHHHHHHHHHHHcCCeEEEE
Confidence 43 244679999999999999999865321 1 112334555666778876653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-12 Score=123.00 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=80.1
Q ss_pred CCEEEEECCCCch----hHHHHhhc-CC-c-cceEEEEcCCHHHHHHHHHcC----------------------------
Q 012709 45 VRTILDIGCGYGS----FGAHLFSK-EL-L-TMCIANYEASGSQVQLTLERG---------------------------- 89 (458)
Q Consensus 45 ~~~VLDVGCG~G~----~~~~La~~-~~-~-~~~v~gvD~S~~~i~~A~er~---------------------------- 89 (458)
..+|||+|||+|. ++..|++. +. . ..+|+|+|+|+.|++.|+++.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999997 55556553 21 1 358999999999999998751
Q ss_pred --------CCeEEEeeccCCCCCC-CCCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEe
Q 012709 90 --------LPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 90 --------~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~ 146 (458)
..+.|...|....|++ .++||+|+|.++++++.... .+++.++.+.|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1467778888776665 57899999999988876432 589999999999999999853
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-11 Score=122.37 Aligned_cols=134 Identities=18% Similarity=0.136 Sum_probs=101.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ + .++.+..+|.. .++|. +||+|+|..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh
Confidence 345799999999999999999874 5679999999 9999999875 3 36889988887 56775 899999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH------------HHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ------------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~------------~~w~~i~~l~~~~~w~~v~~ 181 (458)
++++|.+.. .++|+++.++|||||++++.+.......... .... ...+++.+++++.+|+.+..
T Consensus 277 vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 353 (369)
T 3gwz_A 277 VLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERS 353 (369)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEE
Confidence 988887443 2799999999999999999886543211100 0000 11356778888888887764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=115.63 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=90.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCC----CCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQ----LPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~----Lpfp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|.++..+++.. +..+|+++|+|+.|++.|+++. .++.+..+|+.. ++++ ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~- 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYED- 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEEC-
T ss_pred CCCEEEEEcccCCHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEe-
Confidence 45699999999999999999863 2458999999999999888762 467888888877 7776 789999932
Q ss_pred ccccccccH---HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 117 CGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 117 ~l~~~~~~~---~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.. ++ ..+++++.++|||||+++++..... ........ ...-+++. .+.+.+|+.+...
T Consensus 151 ----~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~-~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 151 ----VA-QPNQAEILIKNAKWFLKKGGYGMIAIKARS-IDVTKDPK-EIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp ----CC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGG-TCSSSCHH-HHHHHHHH-HHHHHTEEEEEEE
T ss_pred ----cC-ChhHHHHHHHHHHHhCCCCcEEEEEEecCC-CCCCCCHH-HhhHHHHH-HHHHCCCEEEEEE
Confidence 22 33 5679999999999999999732110 00011111 11124555 6667788766543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-12 Score=116.54 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|.++..+++.+ .+++++|+|+.+++.|+++ +. ++.+..+|....+.++++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccc
Confidence 345799999999999999999874 3899999999999999876 33 588888888877666789999999988
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+.++.+ ++.++|||||+++++.+.
T Consensus 153 ~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 766653 688999999999999874
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=118.37 Aligned_cols=123 Identities=7% Similarity=0.105 Sum_probs=94.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
+..+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|+++ +. .+.+..+|+..++. +++||+|++...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 3469999999999999999987653 799999999999998876 44 37889999888876 688999998632
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.....++.++.++|||||.+++.+...... ......+.+...++..+|+...
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeecccc------ccccHHHHHHHHHHHcCCeeEE
Confidence 233468999999999999999988632110 0112345667788888887765
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=117.81 Aligned_cols=121 Identities=15% Similarity=0.057 Sum_probs=94.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----C-CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G-LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+...|....++++++||+|++.
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~- 173 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD- 173 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE-
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC-
Confidence 3456999999999999999998722345999999999999999876 4 46788889988888888899999984
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
.. ++..++.++.++|+|||++++..+.. ....++...+...+|..+..
T Consensus 174 ----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~------------~~~~~~~~~l~~~gf~~~~~ 221 (258)
T 2pwy_A 174 ----LM-EPWKVLEKAALALKPDRFLVAYLPNI------------TQVLELVRAAEAHPFRLERV 221 (258)
T ss_dssp ----SS-CGGGGHHHHHHHEEEEEEEEEEESCH------------HHHHHHHHHHTTTTEEEEEE
T ss_pred ----Cc-CHHHHHHHHHHhCCCCCEEEEEeCCH------------HHHHHHHHHHHHCCCceEEE
Confidence 22 45578999999999999999998622 12334455556678876653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-12 Score=120.52 Aligned_cols=169 Identities=11% Similarity=0.134 Sum_probs=92.5
Q ss_pred CcccccceeccccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHH
Q 012709 2 MMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ 81 (458)
Q Consensus 2 m~~~~~~~~F~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~ 81 (458)
|.+....+.+.+....|-....+ .+...+... .......+|||||||+|.++..|++++. .+|+|+|+|+.|
T Consensus 1 ~~~~~~~~~~~~~~~~yvsrg~~--kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~m 72 (232)
T 3opn_A 1 MSLDGTELRLKGEKLRYVSRGGL--KLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQ 72 (232)
T ss_dssp -------------CCCSSSTTHH--HHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCC
T ss_pred CCCCCceEEEecCCCCccCCcHH--HHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHH
Confidence 34455667776666567332221 223333221 1223456999999999999999998753 389999999999
Q ss_pred HHHHHHcCCCeEEEee-ccCCC---CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC---Ccc--
Q 012709 82 VQLTLERGLPAMIGSF-ASKQL---PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT---NPQ-- 152 (458)
Q Consensus 82 i~~A~er~~~~~~~~~-d~~~L---pfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~---~~~-- 152 (458)
++.|+++...+..... +...+ .++...||.+.+..++.+. ..+|.++.|+|||||++++...+. .+.
T Consensus 73 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~ 148 (232)
T 3opn_A 73 LAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL----DLILPPLYEILEKNGEVAALIKPQFEAGREQV 148 (232)
T ss_dssp CCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHH
T ss_pred HHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH----HHHHHHHHHhccCCCEEEEEECcccccCHHHh
Confidence 9999887554433211 11111 1111124444443333332 458999999999999999974211 000
Q ss_pred ---cccccH-HHHHHHHHHHHHHHhhccEEEEee
Q 012709 153 ---AFLRNK-ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 153 ---~~~~~~-e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+..++. ......+++.++++..+|+.....
T Consensus 149 ~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 149 GKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp C-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred CcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 000111 122345778888999999876543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=126.22 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++++ ..+|+|+|+|+ |++.|+++ +. ++.+..+++..+++++++||+|+|..+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred CCCEEEEEeccchHHHHHHHHCC--CCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 44699999999999999999874 34899999995 88888765 43 389999999999999999999999654
Q ss_pred cc--cccccHHHHHHHHHhcccCCcEEEEE
Q 012709 118 GV--DWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 118 l~--~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
.. +.......++.++.|+|||||+++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 22 23346678999999999999999843
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=123.57 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=98.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ +. ++.+..+|... +++. .||+|+|..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEec
Confidence 345799999999999999999874 5679999999 9999999875 33 58888888765 4554 499999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeC--CCCcccccccHHHH------------HHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP--LTNPQAFLRNKENQ------------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~--~~~~~~~~~~~e~~------------~~w~~i~~l~~~~~w~~v~~ 181 (458)
++++|.+.. ..+|+++.++|||||++++.+. .............. ...+++.+++++.+|+.+..
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 336 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 988887433 3799999999999999999887 32111000000000 02356677788888887654
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
.
T Consensus 337 ~ 337 (374)
T 1qzz_A 337 R 337 (374)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-12 Score=112.63 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=90.9
Q ss_pred ceeccccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH
Q 012709 8 QISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 87 (458)
Q Consensus 8 ~~~F~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e 87 (458)
.+.++.+.........+.+.+.+.+.. .....+|||+|||+|.++..+++.+ ..+++++|+++.+++.|++
T Consensus 15 ~~~~~~~~~~rp~~~~~~~~~~~~l~~-------~~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~ 85 (187)
T 2fhp_A 15 RLKALDGDNTRPTTDKVKESIFNMIGP-------YFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKE 85 (187)
T ss_dssp BCCCCCCCSSCCCCHHHHHHHHHHHCS-------CCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHH
T ss_pred cccCCCCCCcCcCHHHHHHHHHHHHHh-------hcCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHH
Confidence 344443332223334455555554421 1234699999999999999988764 3489999999999999887
Q ss_pred c----CC--CeEEEeeccCCC----CCCCCCeeEEEeccccccccccHHHHHHHH--HhcccCCcEEEEEeCCC
Q 012709 88 R----GL--PAMIGSFASKQL----PYPSLSFDMLHCARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 88 r----~~--~~~~~~~d~~~L----pfp~~sFD~I~~~~~l~~~~~~~~~~L~ei--~RvLkPGG~liis~~~~ 149 (458)
+ +. ++.+..+|+... ++++++||+|++... ++. ......+..+ .++|+|||.+++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 86 NIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAK-QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGG-CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCc-hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 6 33 578888886552 223678999999866 332 2445677777 99999999999987644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=121.63 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=99.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ ..++.+..+|... +++ ++||+|++..+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhcc
Confidence 799999999999999999864 5669999999 9999999876 2468888888776 666 6799999999988
Q ss_pred cccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH------------HHHHHHHHHHHhhccEEEEe
Q 012709 120 DWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ------------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 120 ~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~------------~~w~~i~~l~~~~~w~~v~~ 181 (458)
+|.+.. ..+|+++.++|||||++++.+............... ...+++.+++++.+|+.+..
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 319 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERI 319 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEE
Confidence 887432 389999999999999999998654221100000000 01346677788888877653
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=113.96 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++.++. .+|+++|+|+.|++.|+++ +. ++.+..+|+.. ++.++++||+|++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 46999999999999998887764 3899999999999999876 33 68888888766 4666789999999865
Q ss_pred ccccccHHHHHHHHHh--cccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~R--vLkPGG~liis~~ 147 (458)
++. .....+++++.+ +|+|||.++++..
T Consensus 132 ~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FRR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 333 345668888865 6999999999875
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=119.02 Aligned_cols=120 Identities=9% Similarity=0.044 Sum_probs=92.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----C-CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G-LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+..+|... ++++++||+|++.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~- 186 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD- 186 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC-
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc-
Confidence 3457999999999999999998622345999999999999999876 3 357888888876 6777899999983
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
.+ ++..+++++.++|||||+++++.+.. ...+.+.+.+...+|..+..
T Consensus 187 ----~~-~~~~~l~~~~~~LkpgG~l~i~~~~~------------~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 187 ----IP-DPWNHVQKIASMMKPGSVATFYLPNF------------DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp ----CS-CGGGSHHHHHHTEEEEEEEEEEESSH------------HHHHHHHHHSGGGTEEEEEE
T ss_pred ----Cc-CHHHHHHHHHHHcCCCCEEEEEeCCH------------HHHHHHHHHHHHCCCeEEEE
Confidence 22 45679999999999999999998632 12334555566677776653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=123.29 Aligned_cols=135 Identities=12% Similarity=0.158 Sum_probs=101.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCC-CCCCCeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lp-fp~~sFD~I~~~~~ 117 (458)
..+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ +. ++.+..+|....+ ++.+.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 6799999999999999999864 5679999999 7899888765 33 5888888887765 23466999999999
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHH--------------HHHHHHHHHHHHhhccEEEEe
Q 012709 118 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN--------------QKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 118 l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~--------------~~~w~~i~~l~~~~~w~~v~~ 181 (458)
+++|.+. ...+|+++.++|||||++++.+.............. ....+++.+++++.+|+.+..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 8888743 358999999999999999999865432111000000 011356778888999988863
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=125.07 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=80.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..+++.+. .+++|+|+|+ |++.|+++ + .++.+..+|+..+++++++||+|+|..
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 139 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence 3456999999999999999998753 4899999997 89888775 3 468899999999999889999999976
Q ss_pred cc--ccccccHHHHHHHHHhcccCCcEEE
Q 012709 117 CG--VDWDQKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 117 ~l--~~~~~~~~~~L~ei~RvLkPGG~li 143 (458)
+. .........++.++.|+|||||.++
T Consensus 140 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 32 2223345679999999999999998
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=117.21 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCC--CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lp--fp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..+++++. .+++++|+++.+++.|+++ +. ++.+..+|+..++ +++++||+|+|+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 457999999999999999998753 3899999999999999876 33 4889999888765 567899999997
Q ss_pred cccccc-----c--------------ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 116 RCGVDW-----D--------------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 116 ~~l~~~-----~--------------~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
-.++.. . .+...+++++.++|||||++++..+.. ...++...+...+|
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~l~~~~~ 193 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE-------------RLLDIIDIMRKYRL 193 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT-------------THHHHHHHHHHTTE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH-------------HHHHHHHHHHHCCC
Confidence 543322 0 122468999999999999999976422 12334555666676
Q ss_pred EEEE
Q 012709 177 ELVS 180 (458)
Q Consensus 177 ~~v~ 180 (458)
....
T Consensus 194 ~~~~ 197 (259)
T 3lpm_A 194 EPKR 197 (259)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 6554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=123.88 Aligned_cols=134 Identities=14% Similarity=0.088 Sum_probs=100.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ .++.+..+|... |+|++ |+|++..++++|.
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~ 275 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWS 275 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCC
Confidence 345799999999999999999864 6778999999 8898887654 578899998876 77754 9999999988888
Q ss_pred ccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHH---------HH--------HHHHHHHHHHHhhccEEEEee
Q 012709 123 QKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE---------NQ--------KRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 ~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e---------~~--------~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+.. .++|++++++|||||++++.+............. .. ..-+++++++++.+|+.+...
T Consensus 276 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 276 DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 543 3799999999999999999987543211100000 00 012457788888888877643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=119.83 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+..+|||+|||+|.++..+++.+. +++++|+++.+++.|+++ +..+.+..++.... +++++||+|+++.. .
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~-~ 194 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLY-A 194 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECC-H
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCc-H
Confidence 346999999999999999998764 899999999999999876 44467777665542 45678999998753 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+ ....++.++.++|||||++++++... ...+.+...+++.+|+.+...
T Consensus 195 ~---~~~~~l~~~~~~LkpgG~lils~~~~------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 195 E---LHAALAPRYREALVPGGRALLTGILK------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp H---HHHHHHHHHHHHEEEEEEEEEEEEEG------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred H---HHHHHHHHHHHHcCCCCEEEEEeecc------------CCHHHHHHHHHHCCCEEEEEe
Confidence 2 23578999999999999999987522 123456677778888877643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-12 Score=129.44 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------C---CCeEEEeeccCCCCCCC--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------G---LPAMIGSFASKQLPYPS-- 106 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------~---~~~~~~~~d~~~Lpfp~-- 106 (458)
....+|||||||+|.++..++... ...+++|+|+++.+++.|+++ + .++.+..+|+..+|+++
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~ 250 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 250 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc
Confidence 345799999999999999988642 223699999999999888752 3 46889999999988764
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 107 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..||+|+++.. ++ ..+....|.+++|+|||||+|++++...
T Consensus 251 ~~aDVVf~Nn~-~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 251 ANTSVIFVNNF-AF-GPEVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp HTCSEEEECCT-TC-CHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred CCccEEEEccc-cc-CchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 47999999864 33 3456678999999999999999987644
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=125.22 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..+++++. .+|+|+|+| .|++.|+++ +. ++.+..+|+..++++ ++||+|+|..
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~ 137 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW 137 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence 3457999999999999999999864 389999999 999988776 33 488999999999887 8999999965
Q ss_pred cccccc--ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~--~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+... .....++.++.++|||||.+++...
T Consensus 138 ~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp CBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred hhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 333322 3466799999999999999987654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-12 Score=118.54 Aligned_cols=101 Identities=10% Similarity=0.211 Sum_probs=80.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+.+|||+|||+|.++..++... +..+++++|+|+.|+++++++ |....+...|.... .+.++||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH
Confidence 346799999999999999998764 455999999999999999877 45434444554433 456889999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++. ++.+..+.++.+.|||||.|+-..
T Consensus 126 HlL-~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVL-KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 777 555567779999999999988776
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-11 Score=121.12 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=101.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ +. ++.+..+|....++++. |+|++..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~ 264 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR 264 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred CCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence 345799999999999999999874 5679999999 9999999876 33 48899999888877654 9999999
Q ss_pred cccccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccH----------H-HH-----HHHHHHHHHHHhhccEEE
Q 012709 117 CGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK----------E-NQ-----KRWNFVRDFVENLCWELV 179 (458)
Q Consensus 117 ~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~----------e-~~-----~~w~~i~~l~~~~~w~~v 179 (458)
++++|.++ ...+|+++.++|||||++++.+....... .... . .. ...+++.+++++.+|+.+
T Consensus 265 vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v 343 (359)
T 1x19_A 265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTT-SCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCC-CchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceE
Confidence 98888743 46899999999999999999885442110 0000 0 00 123456777888888876
Q ss_pred Eee
Q 012709 180 SQQ 182 (458)
Q Consensus 180 ~~~ 182 (458)
...
T Consensus 344 ~~~ 346 (359)
T 1x19_A 344 TMV 346 (359)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=112.70 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+...|...++ +.++||+|+|...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc--
Confidence 4699999999999999998753 456999999999999998875 43 4788888887766 4578999998642
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+...++.++.++|+|||++++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2456799999999999999999864
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=116.27 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---CeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+..+|||+|||+|.++..+++.+ .+++++|+++.+++.|+++.. ++.+..+|......++++||+|++..++.+
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH
Confidence 45699999999999999999876 389999999999999988732 678888887763334678999999988776
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+. .++.++|||||++++..+.
T Consensus 147 ~~-------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 147 LL-------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CC-------HHHHHTEEEEEEEEEEECS
T ss_pred HH-------HHHHHHcCCCcEEEEEEcC
Confidence 55 3688999999999999863
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=120.56 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=100.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ +. ++.+..+|... +++. .||+|++..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcc
Confidence 345799999999999999999875 5678999999 9999988875 33 68888888764 4554 499999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCC-CCcccccccHHHH------------HHHHHHHHHHHhhccEEEEee
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL-TNPQAFLRNKENQ------------KRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~-~~~~~~~~~~e~~------------~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+++++.+.. ..+++++.++|||||++++.++. ............. ...+++.+++++.+|+.+...
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 337 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 988887433 47999999999999999999876 3211000000000 013567788888899877643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-12 Score=113.00 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCC-C-CC--CCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-P-YP--SLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~L-p-fp--~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..+++++. +++++|+|+.+++.|+++ +.++.+...|.... + ++ .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 346999999999999999999864 599999999999999876 44778888876652 2 11 2479999998
Q ss_pred cccccccccHHHHHHHHH--hcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~--RvLkPGG~liis~~~~ 149 (458)
..++ .....+++.+. ++|||||.++++.+..
T Consensus 118 ~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7643 23445677777 9999999999988644
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-12 Score=117.78 Aligned_cols=103 Identities=9% Similarity=0.012 Sum_probs=65.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCCCCCC-----CCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPS-----LSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~Lpfp~-----~sFD~I~ 113 (458)
....+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++. .++.+..+|+.. ++++ ++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHH-HHHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhhhhhccCcccEEE
Confidence 345699999999999999999874 4669999999999999998763 246666677655 5555 8999999
Q ss_pred eccccccccc------c-------------------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQ------K-------------------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~------~-------------------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+..+++... . ...+++++.++|||||++++...
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9754322110 0 05688899999999999444443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=116.18 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=81.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.++..+++.-.+..+++++|+++.+++.|+++ +. ++.+...|.... +++++||+|++..
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~ 170 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL 170 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEECC
Confidence 3457999999999999999998722456999999999999999877 43 388888887754 7778999999852
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.++..++.++.++|+|||++++..+
T Consensus 171 ------~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 171 ------PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ------CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 2445689999999999999999886
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-11 Score=120.19 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=94.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..++++. +..+++++|++ .++. +++ ..++.+..+|.. .++| +||+|++..
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence 345799999999999999999864 56789999994 4444 221 235788888875 4555 899999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHH------------HHHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN------------QKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~------------~~~w~~i~~l~~~~~w~~v~~ 181 (458)
++++|.+.. ..+|+++.++|||||++++.+.............. ....+++.+++++.+|+.+..
T Consensus 256 vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 988888432 48999999999999999999865432111000000 011356778888889887764
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=115.90 Aligned_cols=130 Identities=13% Similarity=0.045 Sum_probs=87.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH----HHHHcCCCeEEEeeccCC---CCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLPAMIGSFASKQ---LPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~----~A~er~~~~~~~~~d~~~---Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..|+++..+..+++++|+|+.|++ .|+++ .++.+..+|+.. +++.+++||+|+|..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 4569999999999999999986323458999999987654 44443 678888888876 455678999999864
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
. .......++.++.++|||||+++++....... .....+. .+.+-.+++++.+|+.+.
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~--~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIKANCID-STASAEA--VFASEVKKMQQENMKPQE 213 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC-SSSCHHH--HHHHHHHTTGGGTEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEcccccc-cCCCHHH--HHHHHHHHHHHCCCceEE
Confidence 3 22222456889999999999999975421000 0111111 111113556777887765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=123.96 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=80.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC----CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~----~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..+|||+|||+|.++..+++++ +..+|+++|+|+.+++.|+++ +. ++.+...|... ++++++||+|+|+.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP 300 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC
T ss_pred CCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC
Confidence 3699999999999999999874 456999999999999999876 32 46778888766 56778999999997
Q ss_pred ccccc---ccc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDW---DQK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~---~~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+++. ... ...+++++.++|||||.++++.+
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 75542 122 22689999999999999999875
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-11 Score=110.78 Aligned_cols=100 Identities=15% Similarity=0.042 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCCC---CCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLP---YPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~Lp---fp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..++++..+..+++++|+|+.|++.++++ ..++.+..+|+.... ...++||+|++...
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 456999999999999999997632345899999999998887665 246788888877631 12368999998643
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.......++.++.++|||||+++++.
T Consensus 153 ---~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 153 ---QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 22222345999999999999999984
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=119.38 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=91.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCCCC--CCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPY--PSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~Lpf--p~~sFD~ 111 (458)
..+.+|||||||+|.++..+++.. +..+++++|+++.+++.|+++. .++.+..+|...++. ++++||+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 345799999999999999999763 3468999999999999998763 468888888766543 4689999
Q ss_pred EEeccccccccccH----HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 112 LHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 112 I~~~~~l~~~~~~~----~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
|++... .+..... ..+++++.++|||||.+++....... . ....+.+.+.+++.+|..+.
T Consensus 173 Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-----~---~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 173 VIIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL-----D---LELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp EEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTT-----C---HHHHHHHHHHHHHHTCSEEE
T ss_pred EEECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc-----c---hHHHHHHHHHHHhCCCCcEE
Confidence 999754 3322121 47899999999999999998653311 1 12234555666666776543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-11 Score=122.12 Aligned_cols=134 Identities=15% Similarity=0.093 Sum_probs=100.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..+|||||||+|.++..++++. +..+++++|+ +.+++.|+++ .++.+..+|+.. |+|.+ |+|++..++++|.
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~ 273 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWS 273 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCC
Confidence 345799999999999999999864 6778999999 8888887654 578999999877 78754 9999999988897
Q ss_pred cc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHH------H---H--------HHHHHHHHHHHhhccEEEEee
Q 012709 123 QK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE------N---Q--------KRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 123 ~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e------~---~--------~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+. ..++|++++++|||||++++.+............. . . ..-+++++++++.+|+.+...
T Consensus 274 d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 351 (364)
T 3p9c_A 274 DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKST 351 (364)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 43 34799999999999999999987542211100000 0 0 012456778888888877643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-12 Score=112.87 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~~ 114 (458)
....+|||+|||+|.++..+++...+..+++++|+++ +++. .++.+..+|....+ +++++||+|++
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence 3456999999999999999988622345999999999 7643 46778888888776 77789999999
Q ss_pred ccccccccccH-----------HHHHHHHHhcccCCcEEEEEeCC
Q 012709 115 ARCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 115 ~~~l~~~~~~~-----------~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+.++.. .... ..+++++.++|+|||.++++.+.
T Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 95 DMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CCCccc-cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 876433 3233 57899999999999999998763
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=117.03 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---------CeEEEeeccCCC-------CCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------PAMIGSFASKQL-------PYPSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---------~~~~~~~d~~~L-------pfp~~ 107 (458)
...+|||+|||+|.++..++++. +..+++++|+++.+++.|+++-. ++.+..+|...+ +++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 45699999999999999999875 45699999999999999988732 278888888776 36678
Q ss_pred CeeEEEeccccccc-----------------cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDW-----------------DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~-----------------~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+||+|+|+-.+... ......+++++.++|||||++++..+
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999998432221 12245789999999999999999765
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=111.72 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++++ ..+++++|+++.+++.|+++ +. ++.+..+|... ++..+++||+|++..
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 44699999999999999999874 34899999999999999876 32 47788888766 344446799999985
Q ss_pred ccccccccHHHHHHHHH--hcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVD--RVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~--RvLkPGG~liis~~~~ 149 (458)
.+ +. ......+..+. ++|+|||.+++.....
T Consensus 109 ~~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PY-AK-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SS-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CC-Cc-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 53 22 23345677776 9999999999988644
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=116.66 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----C---CCeEEEeeccCCCCCCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----G---LPAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~---~~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+..+|+...++++++||+|++
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~ 177 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence 3456999999999999999998522345999999999999998876 3 3688899998888888889999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. . ++..++.++.++|+|||++++..+
T Consensus 178 ~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 178 DM-----L-APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp ES-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CC-----c-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 42 1 445689999999999999999987
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-12 Score=125.38 Aligned_cols=101 Identities=18% Similarity=0.184 Sum_probs=81.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..+++.+ +..+++++|+|+.|++.|+++ +....+...|.... .+++||+|+|+.++++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--ccCCeeEEEECCCccc
Confidence 4589999999999999999875 456899999999999999876 55667777776543 4689999999987553
Q ss_pred c----cccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 121 W----DQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 121 ~----~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. ......+++++.++|||||.+++..+.
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 1 223458999999999999999998763
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=115.47 Aligned_cols=102 Identities=23% Similarity=0.209 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------C-CCeEEEeeccCC-CC--CCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------G-LPAMIGSFASKQ-LP--YPSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~-~~~~~~~~d~~~-Lp--fp~~ 107 (458)
...+|||||||+|.++..+++.+ +..+++|+|+|+.+++.|+++ + .++.+..+|+.. ++ ++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 44689999999999999999875 456899999999999988664 3 368888888876 56 7788
Q ss_pred CeeEEEecccccccccc--------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~--------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+||.|+.... -.|... ...++.++.++|+|||+|++...
T Consensus 128 ~~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 128 QLSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp CEEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 9999986532 122110 03699999999999999999763
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-11 Score=118.88 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=79.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||||||+|.++..+++.+. .+|+++|+| .|++.|+++ +. ++.+..+|+..+++++++||+|+|..+.
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 46999999999999999998753 489999999 588888765 33 5889999999998888899999997543
Q ss_pred cc--ccccHHHHHHHHHhcccCCcEEEE
Q 012709 119 VD--WDQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 119 ~~--~~~~~~~~L~ei~RvLkPGG~lii 144 (458)
.. .......++.++.++|||||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 32 233456799999999999999974
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=112.52 Aligned_cols=99 Identities=16% Similarity=0.067 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+...|.......+++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 155 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA 155 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence 3456999999999999999998753345899999999999999876 3 2577777776432222578999999988
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+.++. .++.++|||||++++..+.
T Consensus 156 ~~~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 156 GPKIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred hHHHH-------HHHHHHcCCCcEEEEEECC
Confidence 77655 3789999999999999863
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-12 Score=113.72 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeeccCCCCC---CCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPY---PSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~~~Lpf---p~~sFD~I~~~~~l 118 (458)
+++.+|||+|||. +++|+|+.|++.|+++. .++.+..+|+..+++ ++++||+|+|+.++
T Consensus 11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 4457999999986 13999999999999884 358888899988887 88999999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
+++..+...+|++++|+|||||+|++..+....... .......+++...++..+|
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN---NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS---SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc---ccccCCHHHHHHHHHHCCC
Confidence 777356788999999999999999997653221100 0000113566777888888
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.9e-12 Score=119.05 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=80.3
Q ss_pred CCEEEEECCCCchhHHHHhhc---CCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC---CCCC-CCeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPS-LSFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L---pfp~-~sFD~I~~~~~ 117 (458)
+.+|||||||+|..+..|++. ..+..+|+++|+|+.|++.|+....++.+..+|.... ++.+ .+||+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 469999999999999999885 1245699999999999988875556789999998774 5444 47999998654
Q ss_pred cccccccHHHHHHHHHh-cccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDR-VLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~R-vLkPGG~liis~~ 147 (458)
| .+...+|.++.| +|||||++++.+.
T Consensus 162 --~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 162 --H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp --C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred --h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 2 255679999998 9999999999764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-12 Score=124.07 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++ ++ ++.+..+|+..++ ++++||+|+++..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP 153 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC
T ss_pred CCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC
Confidence 45699999999999999999976 3899999999999998876 43 6889999888776 5689999999977
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+.. +....+.++.++|+|||.+++..
T Consensus 154 ~~~~~-~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPD-YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGG-GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcc-hhhhHHHHHHhhcCCcceeHHHH
Confidence 55544 44447788999999999977653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-12 Score=128.35 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=80.9
Q ss_pred CCCEEEEECCC------CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC------CCCeeE
Q 012709 44 GVRTILDIGCG------YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP------SLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG------~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp------~~sFD~ 111 (458)
...+||||||| +|..+..++++.++..+|+|+|+|+.|. ....++.+.++|+.++|+. +++||+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 45799999999 7767777766544667999999999983 2456899999999998887 789999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|+|..+ +++ .+...+|+++.|+|||||++++.+..
T Consensus 292 Visdgs-H~~-~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDGS-HIN-AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEECSC-CCH-HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEECCc-ccc-hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 999753 443 46678999999999999999999864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=124.35 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=83.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..+|||||||+|.++..++++. +..+++++|+ +.+++.|++. .++.+..+|... +++. ||+|++..++++|.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~ 281 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS 281 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC
Confidence 345799999999999999999875 5678999999 9999888764 468888888876 6764 99999999988887
Q ss_pred ccHH--HHHHHHHhcccCCcEEEEEeCC
Q 012709 123 QKDG--ILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 123 ~~~~--~~L~ei~RvLkPGG~liis~~~ 148 (458)
+ +. .+|+++.++|||||++++.+..
T Consensus 282 d-~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 282 D-EKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp H-HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred H-HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4 44 8999999999999999998753
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5.3e-11 Score=120.36 Aligned_cols=99 Identities=20% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++.+. .+|+++|+|+ |++.|+++ + .++.+..+|...++++ ++||+|+|..+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 125 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCC
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCc
Confidence 456999999999999999998753 4899999996 88887765 4 3688999999888776 68999999987
Q ss_pred cccccc-cHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~-~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++|+.. .....+.++.++|||||.+++..
T Consensus 126 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 126 GYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp BTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 777653 34578889999999999998654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=112.25 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C------CCeEEEeeccCCCCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~------~~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
...+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+..+|....+.++++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 456999999999999999987632345899999999999998765 2 267888888776665667899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+..++.++ +.++.++|||||+++++...
T Consensus 157 ~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 157 VGAAAPVV-------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp ECSBBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred ECCchHHH-------HHHHHHhcCCCcEEEEEEec
Confidence 98765443 46889999999999998864
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-11 Score=115.32 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=88.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|.... +++++||+|+|+...
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCC
Confidence 34699999999999999998753 456999999999999999876 43 588888887653 446789999998432
Q ss_pred ccc-------------c-----------ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhh
Q 012709 119 VDW-------------D-----------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENL 174 (458)
Q Consensus 119 ~~~-------------~-----------~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 174 (458)
+.. + .....++.++.++|||||++++..... .-+++.++++..
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------~~~~~~~~l~~~ 253 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-------------QGEAVRQAFILA 253 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-------------CHHHHHHHHHHT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch-------------HHHHHHHHHHHC
Confidence 211 1 123578899999999999999975421 023455566666
Q ss_pred ccEEE
Q 012709 175 CWELV 179 (458)
Q Consensus 175 ~w~~v 179 (458)
+|..+
T Consensus 254 Gf~~v 258 (276)
T 2b3t_A 254 GYHDV 258 (276)
T ss_dssp TCTTC
T ss_pred CCcEE
Confidence 77543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-10 Score=109.50 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CCCC--CCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYP--SLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lpfp--~~sFD~I~~ 114 (458)
++.+|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. ++.+..+|+.. ++.. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 457999999999999999998632256999999999999999876 43 58888888755 3332 348999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
... ......++.++.++|||||++++.+..
T Consensus 143 d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 143 DAD----KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CCc----hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 642 224457999999999999999987653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=113.44 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CCC-C----CCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPY-P----SLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lpf-p----~~sFD~ 111 (458)
.+.+|||||||+|..+..+++...+..+|+++|+++.+++.|+++ +. ++.+..+|+.. ++. + .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 457999999999999999998532356999999999999999876 43 47888888643 332 2 268999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++.....++. ....++.++ ++|||||++++.+.
T Consensus 138 V~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 138 VFLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEcCCcccch-HHHHHHHhc-cccCCCeEEEEeCC
Confidence 99986544443 334567777 99999999998765
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=118.47 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCC--chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEeeccCCCC----CC--CCCe
Q 012709 43 AGVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLP----YP--SLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~--G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~~d~~~Lp----fp--~~sF 109 (458)
.+.++|||||||+ +.++..++++..+..+|+++|.|+.|++.|+++- .++.+..+|+.+++ .+ .++|
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 4668999999997 4455666555456779999999999999998872 14788999887752 11 3455
Q ss_pred e-----EEEecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 D-----MLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D-----~I~~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
| .|+++.+++++.+. +..+++++.+.|+|||+|+++....
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 5 57777776666543 4689999999999999999998643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=113.55 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=90.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ +. ++.+...|.... +++++||+|++..
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~- 189 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV- 189 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC-
Confidence 456999999999999999998722456999999999999999876 43 678888887766 6778899999842
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.++..++.++.++|+|||.+++..+.. ....++.+.+...+|..+.
T Consensus 190 -----~~~~~~l~~~~~~L~pgG~l~~~~~~~------------~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 190 -----PDPWNYIDKCWEALKGGGRFATVCPTT------------NQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp -----SCGGGTHHHHHHHEEEEEEEEEEESSH------------HHHHHHHHHHHHSSEEEEE
T ss_pred -----cCHHHHHHHHHHHcCCCCEEEEEeCCH------------HHHHHHHHHHHHCCCceeE
Confidence 244578999999999999999998622 1123444455557776554
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=121.89 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
+..+|||||||+|.++..++++. +..+++++|+ +.+++.|++. ..+.+..+|... ++|+ ||+|++..++++|.+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWTD 261 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSCH
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCCH
Confidence 45799999999999999999864 5668999999 9999888764 358888888765 6663 999999999888874
Q ss_pred cHH--HHHHHHHhcccC---CcEEEEEeCCC
Q 012709 124 KDG--ILLLEVDRVLKP---GGYFVWTSPLT 149 (458)
Q Consensus 124 ~~~--~~L~ei~RvLkP---GG~liis~~~~ 149 (458)
+. .+|+++.++||| ||++++.+...
T Consensus 262 -~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 262 -KDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp -HHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred -HHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 44 899999999999 99999998643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=119.10 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+..+|||||||+|.++..+++.+....+|+++|+|+.+++.|+++ +. ++.+..+|....+.++++||+|++..++
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCH
Confidence 456999999999999999998754335799999999999999876 33 4788888887765556889999999887
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.++. .++.++|||||+++++..
T Consensus 155 ~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 155 DEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp SCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred HHHH-------HHHHHhcCCCcEEEEEEC
Confidence 7655 478899999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=112.68 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC----ccceEEEEcCCHHHHHHHHHc----C------CCeEEEeeccCCCC----CC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLP----YP 105 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~----~~~~v~gvD~S~~~i~~A~er----~------~~~~~~~~d~~~Lp----fp 105 (458)
...+|||||||+|.++..+++... +..+++++|+++.+++.|+++ + .++.+..+|..... .+
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 456999999999999999998653 456899999999999999876 3 36888888887765 55
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 ~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.++||+|++..++.+ ++.++.++|||||++++..+
T Consensus 160 ~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASE-------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSS-------CCHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHH-------HHHHHHHhcCCCcEEEEEEc
Confidence 678999999876554 34688999999999999875
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-11 Score=112.69 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-fp~~sFD~I~~~ 115 (458)
...+|||||||+|..+..+++.. +..+++++|+++.+++.|+++ +. ++.+..+|+... + ..+++||+|++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 45799999999999999999843 467999999999999999876 33 688998887654 4 346899999976
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. ......+++++.++|||||++++...
T Consensus 150 ~~----~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 AA----KAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TT----SSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred Cc----HHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 32 33456799999999999999988654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=112.99 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=77.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC-C-CCCCCeeEEEecc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P-YPSLSFDMLHCAR 116 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L-p-fp~~sFD~I~~~~ 116 (458)
.+|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. ++.+..+|+... + +++++||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999988533356999999999999999876 33 478888876543 2 4468999999864
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ..+...+++++.++|||||++++.+.
T Consensus 138 ~----~~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 138 S----PMDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp C----TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred c----HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 2 23445689999999999999998654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-10 Score=103.57 Aligned_cols=95 Identities=8% Similarity=0.027 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..+++.+ ..+++++|+|+.+++.|+++..++.+..+|+..++ ++||+|+++..++++..
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC-----
T ss_pred CCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccC
Confidence 45699999999999999999874 33799999999999999998667889999888865 68999999987666653
Q ss_pred c-HHHHHHHHHhcccCCcEEEEEe
Q 012709 124 K-DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 124 ~-~~~~L~ei~RvLkPGG~liis~ 146 (458)
. ...+++++.++| |+ ++++.
T Consensus 126 ~~~~~~l~~~~~~~--g~-~~~~~ 146 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MW-IYSIG 146 (200)
T ss_dssp --CHHHHHHHHHHE--EE-EEEEE
T ss_pred chhHHHHHHHHHhc--Cc-EEEEE
Confidence 2 246899999998 44 44443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-11 Score=110.26 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|..+..+++......+++++|+++.+++.|+++ +. ++.+..+|+... +..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 346999999999999999998632256999999999999999876 33 477888877543 54456 99999863
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ..+...+++++.++|||||++++.+.
T Consensus 135 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 2 23556799999999999999998654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.9e-10 Score=113.45 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=101.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..++++. |..+++..|. +.+++.|+++. .++.+..+|....|.+ .+|+|++..++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeeec
Confidence 44699999999999999999975 7788988997 88999988762 3688888888766655 47999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHH---H----------HHHHHHHHHHHhhccEEEEe
Q 012709 119 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---Q----------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 119 ~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~---~----------~~w~~i~~l~~~~~w~~v~~ 181 (458)
++|.++. .++|+++++.|+|||++++.+.........+.... . ...++.++++++.+|+.+..
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v 331 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF 331 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 9998543 37899999999999999999976532211110000 0 01256788899999987763
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.16 E-value=6.3e-11 Score=113.49 Aligned_cols=104 Identities=14% Similarity=0.012 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-CccceEEEEcCCHHHHHHHHHc--CC-------C----------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER--GL-------P---------------------- 91 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-~~~~~v~gvD~S~~~i~~A~er--~~-------~---------------------- 91 (458)
...+|||+|||+|.++..+++.. .+..+|+|+|+|+.+++.|+++ .. .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 34699999999999999998761 2346899999999999999865 11 1
Q ss_pred ---eE-------------EEeeccCCCCC-----CCCCeeEEEeccccccccc--------cHHHHHHHHHhcccCCcEE
Q 012709 92 ---AM-------------IGSFASKQLPY-----PSLSFDMLHCARCGVDWDQ--------KDGILLLEVDRVLKPGGYF 142 (458)
Q Consensus 92 ---~~-------------~~~~d~~~Lpf-----p~~sFD~I~~~~~l~~~~~--------~~~~~L~ei~RvLkPGG~l 142 (458)
+. +...|...... ..++||+|+|+..+++... ....+++++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 44 77777665321 3458999999865544332 2247999999999999999
Q ss_pred EEEeC
Q 012709 143 VWTSP 147 (458)
Q Consensus 143 iis~~ 147 (458)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=107.38 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++. ..+++++|+++.+++.|+++ + .++.+...|.....+++++||+|++..
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~- 166 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV- 166 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS-
T ss_pred CCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC-
Confidence 4569999999999999999987 34899999999999999876 3 367788888776543667899999842
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.++..+++++.++|+|||++++..+
T Consensus 167 -----~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 167 -----REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp -----SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred -----cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2455689999999999999999986
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=114.16 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecc-
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR- 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~- 116 (458)
....+|||+|||+|..+..+++......+|+++|+|+.+++.++++ +. ++.+..+|+..++..+++||+|++..
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 3456999999999999999997643346899999999999998876 54 68888888887765567899999731
Q ss_pred -----cccc-------cccc--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 -----CGVD-------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 -----~l~~-------~~~~--------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.+ |... ...+|.++.++|||||++++++...
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 1111 1100 1478999999999999999988644
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-10 Score=113.26 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC--CCCCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL--PYPSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L--pfp~~sFD~I 112 (458)
.+++|||||||+|.++..+++.. +..+++++|+++.+++.|+++. .++.+..+|+... .+++++||+|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 45799999999999999999863 4569999999999999998762 3678888886553 2456789999
Q ss_pred Eecccccccc--cc--HHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWD--QK--DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~--~~--~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++... .++. .. ...+++++.++|+|||.+++...
T Consensus 199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 98642 2221 11 25799999999999999999743
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.7e-11 Score=107.71 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCc-cceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC-------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------------------- 103 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~-~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp------------------- 103 (458)
...+|||+|||+|.++..++++... ..+++|+|+|+.+ ...++.+..+|....+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhH
Confidence 3468999999999999999986421 4689999999832 1235778888887776
Q ss_pred ------CCCCCeeEEEecccccccc----ccH-------HHHHHHHHhcccCCcEEEEEeC
Q 012709 104 ------YPSLSFDMLHCARCGVDWD----QKD-------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 104 ------fp~~sFD~I~~~~~l~~~~----~~~-------~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++++||+|+|..+ .++. .+. ..+++++.++|||||.|++...
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 56789999999865 3332 111 1378999999999999999764
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.8e-10 Score=109.87 Aligned_cols=128 Identities=12% Similarity=-0.011 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcC-CHHHHHHHHHcC---------------CCeEEEeeccCCC--CC-
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA-SGSQVQLTLERG---------------LPAMIGSFASKQL--PY- 104 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~-S~~~i~~A~er~---------------~~~~~~~~d~~~L--pf- 104 (458)
...+|||+|||+|.++..+++.+. .+|+++|+ |+.+++.|+++. .++.+...+.... .+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 446999999999999999988753 38999999 899999987763 1344554432221 11
Q ss_pred ---CCCCeeEEEeccccccccccHHHHHHHHHhccc---C--CcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhc-
Q 012709 105 ---PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLK---P--GGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLC- 175 (458)
Q Consensus 105 ---p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLk---P--GG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~- 175 (458)
++++||+|+++.++++.. +...+++++.++|+ | ||.++++....... ......++...+++.+
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~-~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~-------~~~~~~~~~~~l~~~G~ 228 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ-AHDALLRSVKMLLALPANDPTAVALVTFTHHRPH-------LAERDLAFFRLVNADGA 228 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG-GHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------------CTHHHHHHHHSTT
T ss_pred hhccCCCCCEEEEeCcccChH-HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc-------cchhHHHHHHHHHhcCC
Confidence 357899999998876644 66789999999999 9 99987765432110 0111233444566667
Q ss_pred cEEEEe
Q 012709 176 WELVSQ 181 (458)
Q Consensus 176 w~~v~~ 181 (458)
|+....
T Consensus 229 f~v~~~ 234 (281)
T 3bzb_A 229 LIAEPW 234 (281)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 776543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=7.1e-11 Score=118.37 Aligned_cols=99 Identities=17% Similarity=0.076 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------------CCeEEEeeccCCC--CC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------LPAMIGSFASKQL--PY 104 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----------------~~~~~~~~d~~~L--pf 104 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++. .++.+..+|.... ++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 34569999999999999999986324468999999999999998751 3688888888776 56
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 105 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 105 p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++++||+|++... .+..++.++.++|||||.+++..+
T Consensus 184 ~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 184 KSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ----EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 7788999998632 233479999999999999999876
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-10 Score=109.61 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..++++. ...+|+++|+++.+++.|+++ ++ ++.+..+|+..++. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc
Confidence 45699999999999999999864 355899999999999998875 33 67888888887744 5789999987542
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
....++.++.++|+|||.++++...
T Consensus 197 -----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 -----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp -----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred -----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 3456899999999999999998863
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.8e-11 Score=110.42 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-CC----CCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YP----SLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-fp----~~sFD~ 111 (458)
...+|||+|||+|..+..+++......+++++|+++.+++.|+++ +. ++.+..+|+... + +. .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 456999999999999999998632256999999999999999876 33 478888876432 2 11 178999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|++... ......++.++.++|||||++++.+..
T Consensus 144 v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDAD----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 996542 334567999999999999999998754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-11 Score=130.66 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCC--CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL--PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~L--pfp~~sFD~I~~~~ 116 (458)
.+.+|||||||.|.++..|+++|. +|+|+|.|+.+++.|+.+ + .++.+.+++++++ ++++++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 456999999999999999999886 899999999999988764 3 5788999988887 56778999999999
Q ss_pred ccccccccHH--HHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDG--ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~--~~L~ei~RvLkPGG~liis~~ 147 (458)
+++|+.+ +. ..+..+.+.|+++|..++...
T Consensus 143 ~~ehv~~-~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 143 VFHHIVH-LHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp CHHHHHH-HHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred chhcCCC-HHHHHHHHHHHHHhccccceeeEEe
Confidence 9999873 33 345567788888887666554
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=109.69 Aligned_cols=99 Identities=17% Similarity=0.149 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-CCC--CCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYP--SLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-pfp--~~sFD~I~~ 114 (458)
...+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++ +. ++.+..+|.... +.. +++||+|++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 34699999999999999999863 356999999999999999877 43 578888887663 432 578999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.... .+...+++++.++|||||++++.+.
T Consensus 133 ~~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAK----GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGG----SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCH----HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 7542 2556799999999999999999754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=109.52 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCc-----cceEEEEcCCHHHHHHHHHc----------CCCeEEEeeccCCCCCCC-C
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQLPYPS-L 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~-----~~~v~gvD~S~~~i~~A~er----------~~~~~~~~~d~~~Lpfp~-~ 107 (458)
...+|||||||+|.++..+++.... ..+++++|+++.+++.|+++ ..++.+..+|... ++++ +
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence 4569999999999999999874211 14899999999999998876 2367888888766 4555 7
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 108 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+||+|++..++.++. .++.++|||||++++....
T Consensus 163 ~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 163 PYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred CccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEec
Confidence 899999988765543 6889999999999998763
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=108.54 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-CC---CCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-YP---SLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-fp---~~sFD~I 112 (458)
.+.+|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. ++.+..+|+... + ++ .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 356999999999999999998642256999999999999998876 43 478888876542 1 11 2579999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 113 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 113 ~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++... ......++.++.++|||||.+++.+..
T Consensus 138 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 138 FIDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98643 224457999999999999998887653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=119.68 Aligned_cols=103 Identities=16% Similarity=0.041 Sum_probs=78.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH-------HHc----C---CCeEEEeeccCCC--CC--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-------LER----G---LPAMIGSFASKQL--PY-- 104 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A-------~er----~---~~~~~~~~d~~~L--pf-- 104 (458)
....+|||+|||+|.++..+++.. ...+++|+|+++.+++.| +++ + .++.+..++.... ++
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence 345799999999999999999863 234799999999998888 554 4 3577776654322 22
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 105 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 105 p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
..++||+|+++.++ +..+...+|+++.++|||||.+++.++.
T Consensus 320 ~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 320 LIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 24789999987654 3345567899999999999999998653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=109.59 Aligned_cols=96 Identities=16% Similarity=0.119 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCC-CeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSL-SFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~-sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++... .+++++|+++.+++.|+++ +. ++.+..+|. ..+++++ .||+|++..+
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAG 167 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSB
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCc
Confidence 446899999999999999998752 5899999999999999876 32 577777776 4455554 4999999987
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+.++. .++.++|||||+++++.+..
T Consensus 168 ~~~~~-------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 168 APKIP-------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp BSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred HHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 66554 37889999999999998643
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=114.72 Aligned_cols=105 Identities=17% Similarity=-0.004 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||+|||+|.++..++....+..+++|+|+++.|++.|+++ +. .+.+..+|+..++.+.++||+|+|+-.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP 281 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANPP 281 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence 3456899999999999999998652345899999999999999877 44 688999999998887788999999744
Q ss_pred cccccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~-------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...... ....+++++.++|||||++++..+
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 221111 124689999999999999999986
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=113.02 Aligned_cols=123 Identities=15% Similarity=0.031 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGS 96 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~ 96 (458)
-.|.+.+...+..... ........+|||||||+|.++.++++.. +..+++++|+++.+++.|+++- .++.+..
T Consensus 68 ~~Y~e~m~~~~~~l~~-~~p~p~~~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~ 145 (317)
T 3gjy_A 68 FEYMRWIATGARAFID-AHQDASKLRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRV 145 (317)
T ss_dssp SHHHHHHHHHHHHHHH-HHSCGGGCEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEE
T ss_pred hHHHHHHHHHHHhhcc-cCCCCCCCEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEE
Confidence 4566666665543100 0011223499999999999999999843 4568999999999999999872 3678888
Q ss_pred eccCCC--CCCCCCeeEEEeccccccccc----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 97 FASKQL--PYPSLSFDMLHCARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 97 ~d~~~L--pfp~~sFD~I~~~~~l~~~~~----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+... .+++++||+|++.. ..+... ....+++++.++|+|||.|++...
T Consensus 146 ~Da~~~l~~~~~~~fDvIi~D~-~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 146 DDARMVAESFTPASRDVIIRDV-FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCHHHHHHTCCTTCEEEEEECC-STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcHHHHHhhccCCCCCEEEECC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 887654 35568999999863 232211 125799999999999999998764
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-10 Score=106.03 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=93.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||||||+|.++..+++.+ +..+|+++|+++.+++.|+++ +. ++.+..+|......+++.||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 3689999999999999999975 466899999999999999877 44 5888888877665554579998865431
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
-. -...+|.+..+.|+++|+|+++.... ...+++.+...+|..+.+.
T Consensus 101 g~---lI~~IL~~~~~~l~~~~~lIlqp~~~--------------~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 101 GR---LIADILNNDIDKLQHVKTLVLQPNNR--------------EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp HH---HHHHHHHHTGGGGTTCCEEEEEESSC--------------HHHHHHHHHHTTEEEEEEE
T ss_pred hH---HHHHHHHHHHHHhCcCCEEEEECCCC--------------hHHHHHHHHHCCCEEEEEE
Confidence 11 23468888899999999999987411 3467778888899988765
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=108.88 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCC-CCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPY-PSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpf-p~~sFD~I~~~~ 116 (458)
.+.+|||+| |+|.++..++..+ +..+++++|+++.|++.|+++ +. ++.+..+|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 357999999 9999999998865 345899999999999999877 55 78899999887 664 457899999986
Q ss_pred ccccccccHHHHHHHHHhcccCCcEE-EEEeCCCCcccccccHHHHHHHHHHHHHHH-hhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYF-VWTSPLTNPQAFLRNKENQKRWNFVRDFVE-NLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~l-iis~~~~~~~~~~~~~e~~~~w~~i~~l~~-~~~w~~v~ 180 (458)
.+... ....+++++.++|||||++ +++.... ......|..+..... ..++....
T Consensus 250 p~~~~--~~~~~l~~~~~~LkpgG~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 250 PETLE--AIRAFVGRGIATLKGPRCAGYFGITRR--------ESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp CSSHH--HHHHHHHHHHHTBCSTTCEEEEEECTT--------TCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred CCchH--HHHHHHHHHHHHcccCCeEEEEEEecC--------cCCHHHHHHHHHHHHHhcCcchhh
Confidence 53322 2467999999999999954 5554320 011123455566665 66765543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=109.64 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC-CCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L-pfp~~sFD~I~ 113 (458)
.+++|||||||+|.++..+++.. +..+++++|+++.+++.|+++- .++.+..+|+... +..+++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 45799999999999999999763 4569999999999999999872 3577888876542 22357899999
Q ss_pred eccccccccccH----HHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~~----~~~L~ei~RvLkPGG~liis~~ 147 (458)
+... .++.... ..+++++.++|+|||.+++...
T Consensus 157 ~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 8532 3332111 5799999999999999999865
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.2e-11 Score=116.52 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-------CeEEE--eeccCCCCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-------~~~~~--~~d~~~Lpfp~~sFD~I~~ 114 (458)
+..+|||+|||+|.++..++++ .+|+|+|+++ |+..++++.. ++.+. .+|+..+| +++||+|+|
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC 154 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence 4569999999999999999987 3899999998 6444433321 56777 88888765 689999999
Q ss_pred ccccccccccH----H---HHHHHHHhcccCCc--EEEEEeCC
Q 012709 115 ARCGVDWDQKD----G---ILLLEVDRVLKPGG--YFVWTSPL 148 (458)
Q Consensus 115 ~~~l~~~~~~~----~---~~L~ei~RvLkPGG--~liis~~~ 148 (458)
..+ +....+ . .+|.++.++||||| .|++....
T Consensus 155 d~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 155 DIG--ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCC--CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCC--cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 865 222111 1 37899999999999 99997763
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=116.50 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
+..+|||||||+|.++..++++. +..+++++|+ +.+++.|++. .++.+..+|... +++ +||+|+++.++++|.+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWND 266 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCH
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCCH
Confidence 44699999999999999999875 5678999999 7888877653 358888888876 676 4999999999888874
Q ss_pred cHH--HHHHHHHhcccC---CcEEEEEeCCC
Q 012709 124 KDG--ILLLEVDRVLKP---GGYFVWTSPLT 149 (458)
Q Consensus 124 ~~~--~~L~ei~RvLkP---GG~liis~~~~ 149 (458)
+. ++|+++.++||| ||++++.+...
T Consensus 267 -~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 267 -EQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp -HHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred -HHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 44 899999999999 99999988643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-10 Score=109.02 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCCCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
.+++|||||||+|.++..+++. . .+++++|+++.+++.|+++- .++.+..+|+.... ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 4579999999999999999886 3 69999999999999998752 35778888876654 78999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. .++..+++++.++|||||.+++...
T Consensus 146 d~------~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 146 LQ------EPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp SS------CCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CC------CChHHHHHHHHHhcCCCcEEEEEcC
Confidence 62 2445689999999999999999753
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-10 Score=111.97 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCC-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQ-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~-Lpfp~~sFD~I~ 113 (458)
.+++|||||||+|.++..+++.. +..+++++|+++.+++.|+++ ..++.+..+|+.. ++..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45799999999999999999863 356899999999999999875 2467888887654 344568899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+... .++... ...+++++.++|+|||.+++...
T Consensus 174 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 8643 332211 13689999999999999999763
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-11 Score=114.33 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC---CCCC---CCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL---PYPS---LSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L---pfp~---~sFD~ 111 (458)
...+|||+|||+|.++..++++. +..+++++|+|+.|++.|+++ +. ++.+..+|+... +++. ++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 45699999999999999988753 345899999999999999876 33 378888886652 4552 68999
Q ss_pred EEeccccccccc--------------cHHHHHHHHHhcccCCcEEEEEe
Q 012709 112 LHCARCGVDWDQ--------------KDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 112 I~~~~~l~~~~~--------------~~~~~L~ei~RvLkPGG~liis~ 146 (458)
|+|+..+++... ....++.++.|+|||||.+.+..
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 999855443220 01245678888889888876653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-08 Score=94.66 Aligned_cols=118 Identities=12% Similarity=0.049 Sum_probs=85.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
...+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ +.++.+..+|+..++ ++||+|+++..+.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 456999999999999999998753 3799999999999999887 337888888888764 4899999987655
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.... ....+++++.++| ||.+++.... .+ ..+.+...+...+|+...
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~~~~---------~~---~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIHLAK---------PE---VRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEEECC---------HH---HHHHHHHHHHHTTEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEEeCC---------cC---CHHHHHHHHHHCCCeEEE
Confidence 5442 2347899999998 5544443210 11 223455566677776554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=119.20 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=79.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++.+ ..+|+++|+|+ |++.|+++ +. ++.+..+|...++++ ++||+|+|..+
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPM 233 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTT--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred CCCEEEEecCcccHHHHHHHHcC--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCc
Confidence 45699999999999999998864 35899999998 88888765 43 688999998888776 58999999876
Q ss_pred cccccc-cHHHHHHHHHhcccCCcEEEEE
Q 012709 118 GVDWDQ-KDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 118 l~~~~~-~~~~~L~ei~RvLkPGG~liis 145 (458)
++++.. +....+.++.++|||||++++.
T Consensus 234 ~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 234 GYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 666653 2346778899999999999864
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=113.52 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=88.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCCC----CCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLPY----PSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lpf----p~~sFD~I 112 (458)
...+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++ ++ ++.+..+|+..+.. .+++||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 346999999999999999998764 899999999999999876 43 37888888765421 14689999
Q ss_pred Eecccc---------ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 113 HCARCG---------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 113 ~~~~~l---------~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
++.-.. .+...+...++.++.++|+|||.+++........ ..+ ...+.+.+.+...+++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~----~~~--~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA----SFY--SMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS----CHH--HHHHHHHHHTTTSCSEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCC----CHH--HHHHHHHHHHHHcCCeEE
Confidence 995321 1222234578999999999999988876543211 111 112334445556666654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-11 Score=115.17 Aligned_cols=101 Identities=7% Similarity=-0.040 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-CCC-----CCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYP-----SLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-pfp-----~~sFD~ 111 (458)
++++|||||||+|..+..+++...+..+|+++|+++.+++.|+++ +. ++.+..+|+... +.. +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 356999999999999999998543356999999999998877665 43 688888887553 221 478999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|++... ..+...+++++.++|||||.+++.+..
T Consensus 140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 140 IFIDAD----KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEESC----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 998643 334557899999999999999997654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-09 Score=107.12 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCC-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~-Lpfp~~sFD~I~ 113 (458)
.+++|||||||+|.++..+++.. +..+++++|+++.+++.|+++- .++.+..+|+.. ++..+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45799999999999999999862 3468999999999999998752 367888888654 344457899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+... .++... ...+++++.++|+|||.+++...
T Consensus 154 ~d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 9643 333211 24699999999999999999864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=105.70 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=92.3
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||||||+|.++..|++.+ +..+++++|+++.+++.|+++ ++ .+.+..+|......++..||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 3689999999999999999875 466899999999999999887 44 4788888876655444469999875431
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
-. -...+|.+..+.|+++|+|+++... ....+++.+...+|..+.+.
T Consensus 101 g~---lI~~IL~~~~~~L~~~~~lIlq~~~--------------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 101 GT---LIRTILEEGAAKLAGVTKLILQPNI--------------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp HH---HHHHHHHHTGGGGTTCCEEEEEESS--------------CHHHHHHHHHHHTEEEEEEE
T ss_pred hH---HHHHHHHHHHHHhCCCCEEEEEcCC--------------ChHHHHHHHHHCCCEEEEEE
Confidence 11 2346888899999999999998641 13456777888899987654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.4e-11 Score=115.29 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-------CeEEE--eeccCCCCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-------~~~~~--~~d~~~Lpfp~~sFD~I~~ 114 (458)
+..+|||+|||+|.++..++++ .+|+|+|+++ |+..++++.. ++.+. .+|+..++ +++||+|+|
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMC 146 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEE
Confidence 4569999999999999999987 3899999998 5433332221 46777 78887765 689999999
Q ss_pred ccccccccccH----H---HHHHHHHhcccCCc--EEEEEeCC
Q 012709 115 ARCGVDWDQKD----G---ILLLEVDRVLKPGG--YFVWTSPL 148 (458)
Q Consensus 115 ~~~l~~~~~~~----~---~~L~ei~RvLkPGG--~liis~~~ 148 (458)
..+ +...+. . .+|.++.++||||| .|++....
T Consensus 147 d~~--~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG--ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC--CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc--ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 755 222111 1 37899999999999 99997763
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-10 Score=110.41 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCC-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~-Lpfp~~sFD~I~ 113 (458)
.+++|||||||+|..+..+++.. +..+++++|+++.+++.|+++- .++.+..+|+.. ++..+++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45799999999999999999863 4569999999999999999862 356788777654 333567899999
Q ss_pred eccccccccccH----HHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~~----~~~L~ei~RvLkPGG~liis~~ 147 (458)
+... .++.... ..+++++.++|+|||.+++...
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 8642 3332211 4789999999999999999863
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.1e-10 Score=113.55 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++..+++.|.. +|+++|.|+ |++.|++. +. .+.+..++++.+.+| ++||+|+|-..
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~ 158 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWM 158 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecc
Confidence 3469999999999999999988754 899999996 77777653 43 588899999998887 68999998322
Q ss_pred --cccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 118 --GVDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 118 --l~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
.+........++....|+|||||.++-.
T Consensus 159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 159 GYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp BTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccccchhhhHHHHHHhhCCCCceECCc
Confidence 1222334567888899999999998753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-10 Score=111.01 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------CCeEEEeeccCC-CCCCCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----------~~~~~~~~d~~~-Lpfp~~sFD~I 112 (458)
.+++|||||||+|.++..+++.. +..+++++|+++.+++.|+++- .++.+..+|+.. ++..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45799999999999999999863 3568999999999999998752 367888888765 34456889999
Q ss_pred Eeccccccc---cc--c--HHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDW---DQ--K--DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~---~~--~--~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++... .++ .. . ...+++++.++|||||.+++...
T Consensus 156 i~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99753 444 11 0 25789999999999999999753
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.3e-10 Score=106.86 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC----CCCCC--CCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ----LPYPS--LSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~----Lpfp~--~sFD~ 111 (458)
...+|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. ++.+..+++.. ++.++ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 346999999999999999998642356999999999999999876 43 47777777532 33334 78999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|++... ..+...++.++.++|||||++++.+..
T Consensus 152 V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSC----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 998643 234567999999999999999997653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-10 Score=109.67 Aligned_cols=102 Identities=15% Similarity=0.048 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCC-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~-Lpfp~~sFD~I~ 113 (458)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++- .++.+..+|+.. ++..+++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 34799999999999999999862 3469999999999999998762 467888887654 344457899999
Q ss_pred eccccccccc-----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQ-----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~-----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+... .++.. ....+++++.++|||||.+++...
T Consensus 169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8532 23111 125789999999999999999864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=109.55 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCC-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~-Lpfp~~sFD~I~ 113 (458)
.+.+|||||||+|.++..+++.. +..+++++|+++.+++.|+++- .++.+..+|... ++..+++||+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45799999999999999999752 3569999999999999999872 357788887654 233457899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+... .++... ...+++++.++|||||.+++...
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 8642 233211 15799999999999999999764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-10 Score=109.96 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-C-----CCCCee
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-Y-----PSLSFD 110 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-f-----p~~sFD 110 (458)
.+++|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. ++.+..+|+... + + ++++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 457999999999999999988632256999999999999999876 43 577888776542 3 2 257899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|++... ..+...++.++.++|||||++++...
T Consensus 159 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 159 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9998643 23456799999999999999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=110.72 Aligned_cols=120 Identities=15% Similarity=0.023 Sum_probs=88.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..++..+. ..+++|+|+++.|++.|+++ ++ ++.+..+|+..+++++++||+|+|+-.
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 446899999999999999998752 34799999999999999877 44 689999999999988899999999754
Q ss_pred cccccc---c----HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 118 GVDWDQ---K----DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 118 l~~~~~---~----~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
+..... . ...+++++.++| ||.+++..+. .+.+++.+...+|+....
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~---------------~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE---------------KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC---------------HHHHHHHHHHTTEEEEEE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC---------------HHHHHHHHHHcCCEEEEE
Confidence 222111 1 146788999988 5555555531 123445667778887654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=102.74 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCcc--------ceEEEEcCCHHHHHHHHHcCCCeEEE-eeccCCCC--------CCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLT--------MCIANYEASGSQVQLTLERGLPAMIG-SFASKQLP--------YPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~--------~~v~gvD~S~~~i~~A~er~~~~~~~-~~d~~~Lp--------fp~ 106 (458)
...+|||+|||+|.++..++++.... .+++++|+|+.+ ....+.+. .+|....+ +++
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 45799999999999999999873211 589999999842 11346677 77665432 345
Q ss_pred CCeeEEEeccccc---cccccH-------HHHHHHHHhcccCCcEEEEEeC
Q 012709 107 LSFDMLHCARCGV---DWDQKD-------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ~sFD~I~~~~~l~---~~~~~~-------~~~L~ei~RvLkPGG~liis~~ 147 (458)
++||+|+|..+.. ++..+. ..+++++.++|||||.+++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 6899999965322 221122 3689999999999999999875
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-10 Score=105.96 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC-------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP------------- 103 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp------------- 103 (458)
...+|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. .+.+..+|... ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 356999999999999999998642246999999999999999876 33 36777776543 12
Q ss_pred -CCC--CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 104 -YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 104 -fp~--~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++ ++||+|++... ..+...+++++.++|||||++++...
T Consensus 140 ~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 333 78999998743 22345789999999999999999764
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=102.14 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=90.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCC-CeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSL-SFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~-sFD~I~~~~~ 117 (458)
..+|||||||+|.++..+++.+ +..+|+++|+++.+++.|+++ ++ ++.+..+|... +++.+ .||+|+.+..
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AFEETDQVSVITIAGM 93 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GCCGGGCCCEEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hcccCcCCCEEEEcCC
Confidence 3689999999999999999875 566899999999999999876 44 47788877632 23333 6999987543
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.- .-...++.+....|+|+|+|+++... ....+++.+...+|..+.+.
T Consensus 94 Gg---~~i~~Il~~~~~~L~~~~~lVlq~~~--------------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 94 GG---RLIARILEEGLGKLANVERLILQPNN--------------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp CH---HHHHHHHHHTGGGCTTCCEEEEEESS--------------CHHHHHHHHHHTTEEEEEEE
T ss_pred Ch---HHHHHHHHHHHHHhCCCCEEEEECCC--------------CHHHHHHHHHHCCCEEEEEE
Confidence 11 11346888999999999999997641 13456777788899988765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-10 Score=105.67 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC--CCCC----CCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL--PYPS----LSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L--pfp~----~sFD~ 111 (458)
...+|||+|||+|..+..+++......+++++|+++.+++.|+++ +. ++.+..+|+... .+++ ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 457999999999999999998532256999999999999999876 33 678887776432 1211 68999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++... ......+++++.++|+|||.+++.+.
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 998643 23445789999999999999999764
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=106.00 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------------CCeEEEeeccCCC-CCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQL-PYPSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------------~~~~~~~~d~~~L-pfp~~ 107 (458)
.+.+|||||||+|.++..+++. +..+++++|+++.+++.|+++- .++.+..+|+... +. ++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 4579999999999999999986 4569999999999999998763 3467777775432 22 57
Q ss_pred CeeEEEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+||+|++... .++... ...+++++.++|+|||.+++...
T Consensus 152 ~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 152 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 8999998643 333211 25689999999999999999753
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-10 Score=108.15 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCC----CCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY----PSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpf----p~~sFD~I~ 113 (458)
....+|||+|||+|..+..+++......+|+++|+++.+++.++++ +. ++.+...|+..++. +.++||+|+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 3456999999999999999987432225899999999999988776 44 67888888776654 357899999
Q ss_pred eccc------cc-----------cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARC------GV-----------DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~------l~-----------~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+... +. ........+|.++.++|||||++++++...
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8621 10 011344679999999999999999998654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-10 Score=102.32 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-----------CCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-----------SLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-----------~~sFD~ 111 (458)
.+..+|||+|||+|.++..++++ ..+|+|+|+++.. ...++.+..+|+...+.. .++||+
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 34579999999999999999987 3489999999742 124678888888776421 148999
Q ss_pred EEeccccccccc----c-------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQ----K-------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~----~-------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|... ..... + ...++.++.++|||||.|++...
T Consensus 95 Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 95 VVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp EEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 999642 11111 1 13578899999999999998775
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=104.73 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-C-----CCCCee
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-Y-----PSLSFD 110 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-f-----p~~sFD 110 (458)
++++|||||||+|..+..+++...+..+++++|+++.+++.|+++ +. ++.+..+|+... + + ++++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 457999999999999999988632256999999999999999875 44 477887776542 2 2 257899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|++.. ...+...+++++.++|||||++++...
T Consensus 150 ~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 150 FGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEEECC----chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999763 233456799999999999999988654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.7e-09 Score=101.01 Aligned_cols=134 Identities=7% Similarity=0.086 Sum_probs=94.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+.+|||+|||+|.++..+++++. .+|+++|+++.+++.++++ ++ .+.+..+|+..++. .+.||.|+++..
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p 201 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccCCCEEEECCC
Confidence 456999999999999999998763 4899999999999998876 43 47788888877753 478999997632
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeeeceEEEeec
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKT 191 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~ 191 (458)
+ ....+|..+.++|||||.+.+........ ......+.++..++..+++........+-+..|
T Consensus 202 --~---~~~~~l~~a~~~lk~gG~ih~~~~~~e~~------~~~~~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP 264 (278)
T 3k6r_A 202 --V---RTHEFIPKALSIAKDGAIIHYHNTVPEKL------MPREPFETFKRITKEYGYDVEKLNELKIKRYAP 264 (278)
T ss_dssp --S---SGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETT
T ss_pred --C---cHHHHHHHHHHHcCCCCEEEEEeeecccc------cchhHHHHHHHHHHHcCCcEEEEEEEEEEeECc
Confidence 1 22357888999999999998765422100 011124556777778888765444333333333
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=110.58 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~ 115 (458)
....+|||+|||+|..+..++.......+++++|+++.+++.++++ +. ++.+..+|...++ +++++||+|++.
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 3456999999999999999988532225899999999999988776 55 6888888888776 666789999962
Q ss_pred -----cccccccccH----------------HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 -----RCGVDWDQKD----------------GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 -----~~l~~~~~~~----------------~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...++...+. ..+|.++.++|||||++++++...
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1111111111 468999999999999999998754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=105.11 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCe---eEEEec
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSF---DMLHCA 115 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sF---D~I~~~ 115 (458)
..+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++ +. ++.+..+|... +++ ++| |+|+|+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSN 199 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEEC
T ss_pred CCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEc
Confidence 358999999999999999987 456999999999999999876 44 38888888765 233 578 999997
Q ss_pred cccc-----------ccc-------ccHHHHHHHHH-hcccCCcEEEEEeC
Q 012709 116 RCGV-----------DWD-------QKDGILLLEVD-RVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~-----------~~~-------~~~~~~L~ei~-RvLkPGG~liis~~ 147 (458)
-..+ +.+ .+...+++++. +.|+|||++++...
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 2211 111 11126899999 99999999998653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-10 Score=112.07 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcC----CHHHHHHHHHc--C-CCeEEEee-ccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA----SGSQVQLTLER--G-LPAMIGSF-ASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~----S~~~i~~A~er--~-~~~~~~~~-d~~~Lpfp~~sFD~I~~~ 115 (458)
+..+|||+|||+|.++..+++++ +|+|+|+ ++.+++.+..+ + ..+.+..+ |+..++ .++||+|+|.
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 34699999999999999999872 7999999 56544322111 1 24667776 666554 5689999997
Q ss_pred cccc--cccccHH---HHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGV--DWDQKDG---ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~--~~~~~~~---~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.. ++..+.. .+|.++.++|||||.|++..+
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 5432 2211222 478999999999999999765
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=108.49 Aligned_cols=124 Identities=11% Similarity=0.078 Sum_probs=88.3
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC-CC---CCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PY---PSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L-pf---p~~sFD~I~ 113 (458)
..+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++ ++ ++.+..+|+... +. ...+||+|+
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 46999999999999999998653 3899999999999998876 44 678888887552 21 245899999
Q ss_pred eccccc--------cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccE
Q 012709 114 CARCGV--------DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177 (458)
Q Consensus 114 ~~~~l~--------~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~ 177 (458)
+.-... ........++.++.++|+|||.++++....... ....++.+...+...+.+
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-------~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-------VSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-------HHHHHHHHHHHHTTCCCE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-------HHHHHHHHHHHHHHcCCc
Confidence 853322 111122357788899999999999998644221 112345556667777766
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-09 Score=103.41 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=71.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..|++++. +++++|+++.|++.|+++. .++.+..+|+..++++ +||+|+++..
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlp 102 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP 102 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred CCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch--hhcEEEEecC
Confidence 456999999999999999998764 8999999999999998862 2578889998887776 7999999743
Q ss_pred cccccccHH-HHH--------------HHH--HhcccCCcEEE
Q 012709 118 GVDWDQKDG-ILL--------------LEV--DRVLKPGGYFV 143 (458)
Q Consensus 118 l~~~~~~~~-~~L--------------~ei--~RvLkPGG~li 143 (458)
+++....- .++ +|+ +++|+|||.++
T Consensus 103 -y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 103 -YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp -GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred -cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 55543211 222 233 36899999863
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-09 Score=106.23 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCc----cceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELL----TMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~----~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..+++.... ..+++|+|+++.+++.|+.+ +.++.+..+|+... .+.++||+|+++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEEC
Confidence 3469999999999999988875311 25899999999999999875 66788888886553 345789999998
Q ss_pred cccccccccH-----------------HHHHHHHHhcccCCcEEEEEeCC
Q 012709 116 RCGVDWDQKD-----------------GILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 116 ~~l~~~~~~~-----------------~~~L~ei~RvLkPGG~liis~~~ 148 (458)
-.+..+..+. ..++.++.+.|+|||++++..+.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 6643432211 15799999999999999999863
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=111.67 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=80.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC-CCCCCeeEEEe---
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHC--- 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp-fp~~sFD~I~~--- 114 (458)
....+|||+|||+|..+..+++.......|+++|+|+.+++.++++ +..+.+..+|+..++ +.+++||+|++
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCC
Confidence 3457999999999999999997643335899999999999998776 556778888877665 34578999995
Q ss_pred -ccc--c-------cccccc--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 -ARC--G-------VDWDQK--------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 -~~~--l-------~~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+.. + ..+..+ ...+|.++.++|||||+|++++...
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 211 1 111110 1468999999999999999998644
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=108.00 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC--CCCCCeeEEEec-
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCA- 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp--fp~~sFD~I~~~- 115 (458)
....+|||+|||+|..+..+++.. +..+++++|+++.+++.++++ +.++.+..+|...++ +++++||+|++.
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 345699999999999999999865 336899999999999988776 667888888888776 666789999952
Q ss_pred ---cc-cccccccH----------------HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 ---RC-GVDWDQKD----------------GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ---~~-l~~~~~~~----------------~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.. .++-..+. ..+|.++.++|||||++++++...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 11 11111111 368999999999999999998644
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-09 Score=108.32 Aligned_cols=102 Identities=15% Similarity=0.013 Sum_probs=76.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCC-CCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-PYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~L-pfp~~sFD~I~~~~~l~ 119 (458)
+.+|||+|||+|.++..++..+. +|+++|+|+.+++.|+++ +....+..+|+... +...+.||+|++.-..+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 57999999999999999998764 599999999999998876 56656667776553 22134499999864321
Q ss_pred cc--------cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~--------~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.- ......++.++.++|||||++++++...
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 11 1122468899999999999999877643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-09 Score=110.00 Aligned_cols=106 Identities=18% Similarity=0.267 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCC-CCCCeeEEEec--
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCA-- 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpf-p~~sFD~I~~~-- 115 (458)
...+|||+|||+|..+.++++.......|+++|+|+.+++.++++ +. ++.+...|+..++. .+++||.|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 457999999999999999998632345899999999999988776 54 57888888877653 45789999972
Q ss_pred --c--ccc-------ccccc--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 --R--CGV-------DWDQK--------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 --~--~l~-------~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ++. +|... ...+|.++.++|||||++++++...
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1 111 11110 1368999999999999999998644
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-09 Score=99.79 Aligned_cols=130 Identities=11% Similarity=0.014 Sum_probs=92.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+.+|||+|||.|-++..++... +..+++++|+++.|+++++++ +.+..+...|...-+ +.+.||+|+++-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHH
Confidence 447799999999999999998754 677999999999999998876 778888888766555 45789999999876
Q ss_pred ccccccHH-HHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHH-HHHHHHHHHhhccEE
Q 012709 119 VDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKR-WNFVRDFVENLCWEL 178 (458)
Q Consensus 119 ~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~-w~~i~~l~~~~~w~~ 178 (458)
++..+... ..+ ++...|+|+|.++-...-. . ..+.+...+. .+.+++.+...+|..
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ks--l-~Grs~gm~~~Y~~~~e~~~~~~g~~~ 266 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVTFPTKS--L-GQRSKGMFQNYSQSFESQARERSCRI 266 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEEEECC----------CHHHHHHHHHHHHHHHHTCCE
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEeccchh--h-cCCCcchhhHHHHHHHHHHHhcCCce
Confidence 66654333 445 9999999999888765410 0 1112222222 244566666667743
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-09 Score=101.34 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=78.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+.+|||||||+|.++..+. +...++++|+++.|+++++++ +.+..+...|....+.+ ++||+|++.-++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHH
Confidence 457899999999999999887 344899999999999998876 67788888888877766 589999998776
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++..........++...|+++|.++-..
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 6664333334448888999997766554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=100.89 Aligned_cols=113 Identities=11% Similarity=-0.039 Sum_probs=76.2
Q ss_pred CCCCEEEEECC------CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEE-EeeccCCCCCCCCCeeEEEec
Q 012709 43 AGVRTILDIGC------GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGC------G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~-~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
....+|||+|| |+|. ..++++..+..+|+|+|+|+. + .++.+ ..+|+..++++ ++||+|+|+
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~Vvsn 130 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTA-NKWDLIISD 130 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCS-SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCcc-CcccEEEEc
Confidence 34569999999 4466 334443222468999999997 1 25677 88998888765 789999996
Q ss_pred ccccccc-----------ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 116 RCGVDWD-----------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 116 ~~l~~~~-----------~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
.. .++. .....+++++.|+|||||.|++..+.... .+++...++..+|..+
T Consensus 131 ~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~------------~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 131 MY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW------------NADLYKLMGHFSWWTA 192 (290)
T ss_dssp CC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC------------CHHHHHHHTTEEEEEE
T ss_pred CC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC------------HHHHHHHHHHcCCcEE
Confidence 32 2221 01236899999999999999998753211 1245566666666544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-09 Score=108.21 Aligned_cols=104 Identities=14% Similarity=0.003 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCC----CCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY----PSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpf----p~~sFD~I~ 113 (458)
...+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++ ++ ++.+..+|+..+.. ++++||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 456999999999999999998743 4899999999999998876 44 67888888765421 257899999
Q ss_pred eccccccc--------cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l~~~--------~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+.-..... ......++.++.++|+|||.++++....
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 86432211 1233478899999999999999988644
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.2e-09 Score=106.92 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCCC----CCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLPY----PSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lpf----p~~sFD~I 112 (458)
...+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++ ++ ++.+..+|+..... .+++||+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 346999999999999999998753 4899999999999998876 55 67888888765421 14689999
Q ss_pred Eeccccc--------cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGV--------DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~--------~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.-... ........++.++.++|+|||.++++....
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9864221 112334578999999999999999988644
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.5e-09 Score=115.16 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=80.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCC-CCCCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LPYPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~-Lpfp~~sFD~I~~~~ 116 (458)
..+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++ ++ ++.+..+|+.. ++...++||+|++.-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46999999999999999998664 3799999999999999876 43 48888888765 344567899999864
Q ss_pred ccc----------cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGV----------DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~----------~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..+ ....+...++.++.++|+|||+++++....
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 221 122233468999999999999999988653
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=100.15 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=56.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..|++++. +++++|+++.|++.|+++ + .++.+..+|+..++++ +||+|+++..
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~D~Vv~n~p- 115 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP--KFDVCTANIP- 115 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC--CCSEEEEECC-
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc--cCCEEEEcCC-
Confidence 456999999999999999998753 899999999999999876 3 3678888888877664 7999999754
Q ss_pred cccc
Q 012709 119 VDWD 122 (458)
Q Consensus 119 ~~~~ 122 (458)
+++.
T Consensus 116 y~~~ 119 (299)
T 2h1r_A 116 YKIS 119 (299)
T ss_dssp GGGH
T ss_pred cccc
Confidence 5554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.8e-08 Score=100.39 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
...+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|+++ ++.+.+..+|+..+.. .+||+|++.-..
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr- 363 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPR- 363 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCT-
T ss_pred CCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCc-
Confidence 346999999999999999998753 899999999999998876 4558888888877642 289999986432
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
......+++.+. .|+|||.++++..
T Consensus 364 --~g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 364 --AGLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp --TCSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred --cchHHHHHHHHH-hcCCCcEEEEECC
Confidence 112233555554 5999999999864
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-09 Score=106.53 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCC----CCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY----PSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpf----p~~sFD~I~~ 114 (458)
...+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++ +. ++.+..+|+..... .+++||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 3468999999999999999986 34899999999999998876 43 37888888765421 2578999998
Q ss_pred ccccccc--------cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~--------~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.-..... ......++.++.++|+|||.++++....
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 5322211 1223468999999999999999998644
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=105.76 Aligned_cols=128 Identities=18% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
....+|||+|||+|..+.+++........|+++|+|+.+++.++++ +. ++.+...|...++ ..+++||+|++.-
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECC
Confidence 3457999999999999999987632335899999999999988776 44 4777777776654 3357899999732
Q ss_pred c---ccccccc------------------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhc
Q 012709 117 C---GVDWDQK------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLC 175 (458)
Q Consensus 117 ~---l~~~~~~------------------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~ 175 (458)
- .-.+..+ ...+|.++.++|||||++++++....+ .|. -+.+..++++..
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~------eEn---e~vv~~~l~~~~ 254 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP------EEN---EEIISWLVENYP 254 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG------GGT---HHHHHHHHHHSS
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc------ccC---HHHHHHHHHhCC
Confidence 1 0011111 126799999999999999999875432 222 223455566656
Q ss_pred cEEE
Q 012709 176 WELV 179 (458)
Q Consensus 176 w~~v 179 (458)
++++
T Consensus 255 ~~l~ 258 (456)
T 3m4x_A 255 VTIE 258 (456)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 5544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=100.95 Aligned_cols=93 Identities=10% Similarity=0.056 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++.. ++ + ..+++++|+|+.+++.|+++ +. ++.+..+|+.... ++||+|++...
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT
T ss_pred CCCEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc
Confidence 446999999999999999 77 3 45899999999999998876 43 5888888887765 78999998632
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. ....++.++.++|+|||.+++.+..
T Consensus 268 --~---~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 268 --K---FAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp --T---TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --H---hHHHHHHHHHHHcCCCCEEEEEEee
Confidence 1 1235899999999999999998753
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=102.60 Aligned_cols=119 Identities=20% Similarity=0.197 Sum_probs=84.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc--
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD-- 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~-- 122 (458)
..+|||+|||+|.++..++++.....+++|+|+++.+++.| .++.+..+|....+ +.++||+|+++-......
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSSCEEEEEECCCCCCBSCT
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcC-ccCCCCEEEECcCccCcccc
Confidence 45999999999999999987522235899999999998877 46778888877664 347899999963322111
Q ss_pred --------cc------------------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 123 --------QK------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 123 --------~~------------------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
.+ ...++..+.++|+|||++++..+.. +... ...+.+++.+...++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~----~l~~----~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT----WLVL----EDFALLREFLAREGK 186 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG----GGTC----GGGHHHHHHHHHHSE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH----HhcC----ccHHHHHHHHHhcCC
Confidence 11 1146889999999999999998732 1111 123456666666666
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-07 Score=95.55 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC----CCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~----Lpfp~~sFD~I~~ 114 (458)
...+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|+++ +. ++.+..+|+.. +++++++||+|++
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 362 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence 44699999999999999999874 3899999999999999876 33 68899988876 3466678999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.--... . ..+++.+. .++|++.++++..
T Consensus 363 dPPr~g---~-~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 363 DPARAG---A-AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CCCTTC---C-HHHHHHHH-HHCCSEEEEEESC
T ss_pred CCCCcc---H-HHHHHHHH-hcCCCeEEEEECC
Confidence 643211 1 23455444 3789998888764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-09 Score=104.92 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCC-CCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPS-LSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~-~sFD~I~~~~~l~ 119 (458)
...+|||+|||+|.++..+++++ .+++|+|+++.|++.|+++. .++.+..+|+..+++++ ++| .|+++-. +
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P-y 103 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVGNIP-Y 103 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEEECC-S
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEEeCC-c
Confidence 34689999999999999999876 38999999999999887763 35788889999888874 689 6776532 1
Q ss_pred ccc-----------ccHHHHH----HHHHhcccCCcEEEEEe
Q 012709 120 DWD-----------QKDGILL----LEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~-----------~~~~~~L----~ei~RvLkPGG~liis~ 146 (458)
+.. .....++ +.+.|+|+|||.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 111 1112233 56888888888877654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=94.03 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCC-CCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPS-LSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~-~sFD~I~~~ 115 (458)
...+|||+|||+|.++..|++++ .+++++|+++.|++.++++. .++.+..+|+..+++++ ..| .|+++
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 45699999999999999999876 38999999999999998873 36889999999998874 456 45555
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=98.94 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcC------------CccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE------------LLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLPY 104 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~------------~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lpf 104 (458)
...+|||.|||+|.++..+++.- ....+++|+|+++.+++.|+.+ +. ...+..+|+...+.
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 34689999999999998887531 0234799999999999999765 54 56788888776654
Q ss_pred CCCCeeEEEeccccccccc--c--------------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 105 PSLSFDMLHCARCGVDWDQ--K--------------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 105 p~~sFD~I~~~~~l~~~~~--~--------------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .+||+|+++-.+..... . ...+++.+.+.|||||+++++.|
T Consensus 251 ~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 251 S-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp S-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 4 48999999865443211 0 12689999999999999999986
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-08 Score=95.05 Aligned_cols=75 Identities=15% Similarity=0.022 Sum_probs=64.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
...+|||||||+|.++..|++++. +|+++|+++.|++.++++ ..++.+..+|+..+++++.+||+|+++.. ++
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlP-y~ 125 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLP-YQ 125 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEEEEECC-GG
T ss_pred CcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEEEEeCc-cc
Confidence 456999999999999999998753 899999999999999877 35789999999999988888999998743 44
Q ss_pred cc
Q 012709 121 WD 122 (458)
Q Consensus 121 ~~ 122 (458)
+.
T Consensus 126 is 127 (295)
T 3gru_A 126 IS 127 (295)
T ss_dssp GH
T ss_pred cc
Confidence 43
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.46 E-value=4.7e-07 Score=87.76 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCC----CCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPS----LSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~----~sFD~I~~~ 115 (458)
...+|||||||+|.++..|++++ .+++++|+++.|++.++++. .++.+..+|+..+++++ +.|| |+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred CcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEec
Confidence 45699999999999999999876 38999999999999998872 57899999999887653 5688 6665
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=91.50 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=69.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCC-----------
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPS----------- 106 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~----------- 106 (458)
..+|||+|||+|.++..+++.. .+|+++|+++.+++.|+++ ++ ++.+..+|+..+. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence 3589999999999999998753 3899999999999998775 44 6788888765531 121
Q ss_pred ---CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 107 ---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ---~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+||+|++.--.. .+..++.+.|+++|.++++..
T Consensus 291 ~~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 291 LKSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GGGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEES
T ss_pred cccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEEC
Confidence 3799998753211 134567777889999988875
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-07 Score=88.32 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=89.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccccccccccccCCCCCCccccccccc-ccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEG-LLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~~~~~~~~~~yp~t~dl~h~~~-~~~~~ 383 (458)
..|||+|||.|.++..|.+... +|+-++-. ..+..+-++ ++-=+-.|..+ ++. +.+||+|.+.. +|..+
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~-~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG-----TVEGLELSADMLAIARRRNPDAVLHHGDMRD-FSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-CCC-SCCEEEEEECTTGGGGS
T ss_pred CcEEEeCCcCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChHH-CCc-cCCcCEEEEcCchhhhc
Confidence 6899999999999999984322 44444543 445544443 22112223322 343 78999999887 77766
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEecc-------------------------------------------------
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------------------------------------------- 414 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~------------------------------------------------- 414 (458)
.+.-....+|-++-|+|||||.+++.+.
T Consensus 125 ---~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (263)
T 3pfg_A 125 ---AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDR 201 (263)
T ss_dssp ---CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTT
T ss_pred ---CCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCC
Confidence 3334556789999999999999999520
Q ss_pred ------------HHHHHHHHHHHhhccceEEEEeeccCCCccEEEEEec
Q 012709 415 ------------ARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 415 ------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
....++++++++.--+++...... .....++|++|+
T Consensus 202 ~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~-~~~~~~~va~K~ 249 (263)
T 3pfg_A 202 GITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG-PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTSSCEEEEEEC
T ss_pred cEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC-CCCceeEEEecC
Confidence 002688999999988887665322 234778999996
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-07 Score=91.06 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC-------------------------------------ccceEEEEcCCHHHHHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL-------------------------------------LTMCIANYEASGSQVQLTL 86 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~-------------------------------------~~~~v~gvD~S~~~i~~A~ 86 (458)
+..+|||.|||+|.++..++..+. ...+|+|+|+++.|++.|+
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 446899999999999988876431 1147999999999999998
Q ss_pred Hc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccccccc---cHHHHHHHHHhcccC--CcEEEEEeC
Q 012709 87 ER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKP--GGYFVWTSP 147 (458)
Q Consensus 87 er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~---~~~~~L~ei~RvLkP--GG~liis~~ 147 (458)
++ ++ .+.+...|+..++.+ ++||+|+|+--...-.. +...+.+++.++||+ ||.+++.+.
T Consensus 275 ~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 76 54 588999999888765 58999999854332211 223567777777776 888888775
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=88.07 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=58.6
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCC-CeeEEEecc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSL-SFDMLHCAR 116 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~-sFD~I~~~~ 116 (458)
+|||||||+|.++..|++++. +|+++|+++.|++.++++. .++.+..+|+..+++++. .||.|+++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEEEE
T ss_pred eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEecC
Confidence 899999999999999999863 8999999999999998873 468899999988887653 689999874
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.6e-07 Score=91.19 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC-------------------------------------ccceEEEEcCCHHHHHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL-------------------------------------LTMCIANYEASGSQVQLTL 86 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~-------------------------------------~~~~v~gvD~S~~~i~~A~ 86 (458)
+..+|||.+||+|.++..++..+. ...+|+|+|+++.|++.|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 446899999999999887765421 1146999999999999998
Q ss_pred Hc----CC--CeEEEeeccCCCCCCCCCeeEEEecccccccc---ccHHHHHHHHHhcccC--CcEEEEEeC
Q 012709 87 ER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSP 147 (458)
Q Consensus 87 er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~---~~~~~~L~ei~RvLkP--GG~liis~~ 147 (458)
++ ++ .+.+..+|+..++.+ .+||+|+|+--..... .+...+.+++.++||+ ||.+++.+.
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 76 44 488999999988766 5899999984322211 1123456666667766 888888775
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=87.23 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCC---CCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPS---LSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~---~sFD~I~~ 114 (458)
....+|||+|||+|..+.+++..-.....|+++|+++.+++.++++ +. ++.+...|+..++... ++||.|++
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence 3457999999999999999987522345899999999999988776 54 6788888887765432 57999996
Q ss_pred c----c--cccc-----c----c-ccH-------HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 A----R--CGVD-----W----D-QKD-------GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~----~--~l~~-----~----~-~~~-------~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. . .+.. | . .+. .++|..+.++|+ ||++++++...
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 2 1 1111 1 1 111 246778888887 99999987644
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=89.30 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=90.0
Q ss_pred cccCccchhhHHHHHHHHHhhhh----ccccc---cCCCCEEEEECCCCchhHHHHhhc---------------CCccce
Q 012709 14 ASLIFDGVEDYSHQIAEMIGLRN----ESNFI---LAGVRTILDIGCGYGSFGAHLFSK---------------ELLTMC 71 (458)
Q Consensus 14 ~~~~fd~~~~~~~~l~~~l~~~~----~~l~~---~~~~~~VLDVGCG~G~~~~~La~~---------------~~~~~~ 71 (458)
+...|+....+++.+........ ..+.. ....-+|+|+||++|.++..+.+. ..+..+
T Consensus 14 G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~ 93 (359)
T 1m6e_X 14 GENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ 93 (359)
T ss_dssp TSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE
Confidence 45668777677765554432111 11111 233457999999999888776654 346688
Q ss_pred EEEEcCCHHHHHHHHHcCC------CeEEEeec---cCCCCCCCCCeeEEEecccccccccc-H----------------
Q 012709 72 IANYEASGSQVQLTLERGL------PAMIGSFA---SKQLPYPSLSFDMLHCARCGVDWDQK-D---------------- 125 (458)
Q Consensus 72 v~gvD~S~~~i~~A~er~~------~~~~~~~d---~~~Lpfp~~sFD~I~~~~~l~~~~~~-~---------------- 125 (458)
|...|...+....+-+.-. +..+..+. ...-.||++++|+|+|+.+ +||..+ |
T Consensus 94 v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~nkg~i~~~~~~ 172 (359)
T 1m6e_X 94 IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTC 172 (359)
T ss_dssp EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSS
T ss_pred EEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhh-hhhcccCchhhhccCCceEecCCC
Confidence 9999998888776655421 22343333 2334689999999999987 777533 1
Q ss_pred ----------------HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 126 ----------------GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 126 ----------------~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..+|+...+.|+|||+++++....
T Consensus 173 p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr 212 (359)
T 1m6e_X 173 PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp CCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 134888899999999999998755
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-06 Score=87.65 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC-------------------------------------ccceEEEEcCCHHHHHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL-------------------------------------LTMCIANYEASGSQVQLTL 86 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~-------------------------------------~~~~v~gvD~S~~~i~~A~ 86 (458)
+...|||.+||+|.+...++..+. ...+++|+|+++.|++.|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 446899999999999888765421 0146999999999999998
Q ss_pred Hc----CC--CeEEEeeccCCCCCCCCCeeEEEecccccccc---ccHHHHHHHHHhcccC--CcEEEEEeC
Q 012709 87 ER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QKDGILLLEVDRVLKP--GGYFVWTSP 147 (458)
Q Consensus 87 er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~---~~~~~~L~ei~RvLkP--GG~liis~~ 147 (458)
++ ++ .+.+...|+..++.+ .+||+|+|+--...-. .+...+.+++.+.||+ ||.+++.++
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 77 44 488999999988776 4899999984322211 1223566677777776 999888876
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.9e-06 Score=84.96 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCEEEEECCCCchhHHHHhh--------c------CCccceEEEEcCCHHHHHHHHHc-----------------CCCeE
Q 012709 45 VRTILDIGCGYGSFGAHLFS--------K------ELLTMCIANYEASGSQVQLTLER-----------------GLPAM 93 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~--------~------~~~~~~v~gvD~S~~~i~~A~er-----------------~~~~~ 93 (458)
.-+|+|+|||+|.++..+++ + ..+..+|...|.-.+.....-+. +.+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 57899999999988887722 1 12457888999877654322111 00111
Q ss_pred EEe--ec-cCCCCCCCCCeeEEEecccccccccc--------------------------------------HHHHHHHH
Q 012709 94 IGS--FA-SKQLPYPSLSFDMLHCARCGVDWDQK--------------------------------------DGILLLEV 132 (458)
Q Consensus 94 ~~~--~d-~~~Lpfp~~sFD~I~~~~~l~~~~~~--------------------------------------~~~~L~ei 132 (458)
+.. .. ...-.||+++||+|+|+.+ +||..+ -..+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 2223589999999999987 677541 12468888
Q ss_pred HhcccCCcEEEEEeCCC
Q 012709 133 DRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 133 ~RvLkPGG~liis~~~~ 149 (458)
.+.|+|||+++++....
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGR 228 (374)
T ss_dssp HHHEEEEEEEEEEEEEC
T ss_pred HHHhCCCCEEEEEEecC
Confidence 99999999999998755
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=83.89 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH---cCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e---r~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
...+|||+|||+|.++.+++.+. ...++.++|++.++...... .+.++.....+++...++++.||+|+|..+ .+
T Consensus 74 ~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~a-pn 151 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIG-ES 151 (277)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-CC
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCc-cC
Confidence 34589999999999999988753 23467888887543111111 022344445555556677889999999753 33
Q ss_pred ----ccccHH--HHHHHHHhcccCC-cEEEEEeCC
Q 012709 121 ----WDQKDG--ILLLEVDRVLKPG-GYFVWTSPL 148 (458)
Q Consensus 121 ----~~~~~~--~~L~ei~RvLkPG-G~liis~~~ 148 (458)
+.+... .+|..+.++|+|| |.|++-.+.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 332222 3568889999999 999998764
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=87.35 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCEEEEECCCCchhHHHHhhc----------------CCccceEEEEcCC-----------HHHHHHHHHc-C--CCeEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSK----------------ELLTMCIANYEAS-----------GSQVQLTLER-G--LPAMI 94 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~----------------~~~~~~v~gvD~S-----------~~~i~~A~er-~--~~~~~ 94 (458)
.-+|+|+||++|.++..+.+. ..+..+|...|.. +.+.+.+++. + .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999888877653 1356788899987 4444444332 2 23344
Q ss_pred EeeccCC---CCCCCCCeeEEEeccccccccccHH---------------------------------------HHHHHH
Q 012709 95 GSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDG---------------------------------------ILLLEV 132 (458)
Q Consensus 95 ~~~d~~~---Lpfp~~sFD~I~~~~~l~~~~~~~~---------------------------------------~~L~ei 132 (458)
..+.... -.||+++||+|+|+.+ +||..+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~a-LHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYC-LHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESC-TTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecce-eeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333 4589999999999987 77753321 125556
Q ss_pred HhcccCCcEEEEEeCCC
Q 012709 133 DRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 133 ~RvLkPGG~liis~~~~ 149 (458)
.+.|+|||+++++....
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 212 SEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHEEEEEEEEEEEECC
T ss_pred HHHhccCCeEEEEEecC
Confidence 89999999999998765
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=91.50 Aligned_cols=120 Identities=17% Similarity=0.139 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHh---hcCCccceEEEEcCCHHHHHHHHHc------CCCe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLF---SKELLTMCIANYEASGSQVQLTLER------GLPA 92 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La---~~~~~~~~v~gvD~S~~~i~~A~er------~~~~ 92 (458)
..|.+.+.+.+...............|||||||+|-++...+ +++....+|+++|-|+.+ ..|++. +-.+
T Consensus 335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A-~~a~~~v~~N~~~dkV 413 (637)
T 4gqb_A 335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNA-VVTLENWQFEEWGSQV 413 (637)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHH-HHHHHHHHHHTTGGGE
T ss_pred HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHH-HHHHHHHHhccCCCeE
Confidence 456666666554332211122334579999999998844443 333344579999999854 344432 3368
Q ss_pred EEEeeccCCCCCCCCCeeEEEecccccc-ccccHHHHHHHHHhcccCCcEEE
Q 012709 93 MIGSFASKQLPYPSLSFDMLHCARCGVD-WDQKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 93 ~~~~~d~~~Lpfp~~sFD~I~~~~~l~~-~~~~~~~~L~ei~RvLkPGG~li 143 (458)
.++.++++++..| +++|+|+|=..-.. ..+.....|....|.|||||.++
T Consensus 414 tVI~gd~eev~LP-EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 414 TVVSSDMREWVAP-EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEESCTTTCCCS-SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEeCcceeccCC-cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 8999999998877 68999997321111 11122357888899999999864
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-06 Score=81.32 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=87.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccC---CCCC-Cccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAF---PTYP-RTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~---~~yp-~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|.++.+|. .... +|+-++-. ..+..+-+++.+.....-.+.+ +..+ .+||+|.+..++.
T Consensus 54 ~~vLdiG~G~G~~~~~l~--~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALA--DRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHH--TTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-
T ss_pred CEEEEeCCCCCHHHHHHH--HCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-
Confidence 689999999999999998 4433 44444543 5566666665433332111112 2223 4599999888776
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEeccH--------------------------------HHHHHHHHHHhhccc
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------------------------------RLIESARALTTRLKW 430 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~--------------------------------~~~~~~~~~~~~~~w 430 (458)
. .+...+|-|+-|+|+|||++++.+.. ...++++++++.-.+
T Consensus 128 ~------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 201 (227)
T 3e8s_A 128 H------QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGL 201 (227)
T ss_dssp S------SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTE
T ss_pred h------hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCC
Confidence 3 24567899999999999999996420 146888899999999
Q ss_pred eEEEEeeccC-----CCccEEEEEec
Q 012709 431 DARVIEIESN-----SDERLLICQKP 451 (458)
Q Consensus 431 ~~~~~~~~~~-----~~~~~~~~~k~ 451 (458)
++.-...... +..-+++++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 202 RLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred eEEEEecCCCCCCCCceeEEEEeecC
Confidence 8766543221 12456677764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-06 Score=85.05 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCc-cceEEEEcCCHHHHHHHHHc-CCCeEEEeecc
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER-GLPAMIGSFAS 99 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~-~~~v~gvD~S~~~i~~A~er-~~~~~~~~~d~ 99 (458)
....+.+.+.+.. ....+|||||||+|.++..|++++.. ..+++++|+++.|++.++++ ..++.+..+|+
T Consensus 28 ~~i~~~iv~~~~~--------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~ 99 (279)
T 3uzu_A 28 HGVIDAIVAAIRP--------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA 99 (279)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG
T ss_pred HHHHHHHHHhcCC--------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh
Confidence 3444555555432 34569999999999999999987642 23499999999999999887 45788999999
Q ss_pred CCCCCCC
Q 012709 100 KQLPYPS 106 (458)
Q Consensus 100 ~~Lpfp~ 106 (458)
..+++++
T Consensus 100 ~~~~~~~ 106 (279)
T 3uzu_A 100 LTFDFGS 106 (279)
T ss_dssp GGCCGGG
T ss_pred hcCChhH
Confidence 8888754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=88.84 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=74.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCC-C-CCCCCeeEEEec
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-P-YPSLSFDMLHCA 115 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~L-p-fp~~sFD~I~~~ 115 (458)
..+|||++||+|.++..++++..-..+|+++|+++.+++.++++ ++. +.+..+|+..+ . ...+.||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 46899999999999999998521124899999999999998876 543 77888876443 1 124679999976
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
- . ..+..++..+.+.|+|||.++++..
T Consensus 133 P----~-g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 133 P----F-GTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp C----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C----C-cCHHHHHHHHHHHhCCCCEEEEEec
Confidence 4 1 1234589999999999998888763
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=80.37 Aligned_cols=133 Identities=8% Similarity=0.023 Sum_probs=88.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc--cccccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg--l~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.++..|.+++. +|+-++-. ..+..+-++. +-=+..|.. .++.-+.+||+|.+.++|..+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH-----QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC-----CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTCC
T ss_pred CeEEEecCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcCC
Confidence 5799999999999999985433 33333433 4444444442 111222222 2333347999999998887661
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEeeccCCCccEEEE
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIESNSDERLLIC 448 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 448 (458)
.-....+|-++-|+|+|||++++.+.. ...+++++++....|++.............++.
T Consensus 117 ----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~ 192 (203)
T 3h2b_A 117 ----PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTA 192 (203)
T ss_dssp ----TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhh
Confidence 345678999999999999999986421 226889999999999987776655543444444
Q ss_pred Ee
Q 012709 449 QK 450 (458)
Q Consensus 449 ~k 450 (458)
.|
T Consensus 193 ~~ 194 (203)
T 3h2b_A 193 EA 194 (203)
T ss_dssp EE
T ss_pred hh
Confidence 43
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=81.95 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=60.7
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc--
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-- 123 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~-- 123 (458)
.+||.++-+.|.++..+... .++..+.-|....+..+.++...... . ....+...||+|+.. .+-..
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~~~~~d~v~~~---~Pk~k~~ 115 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGR----MAVERLETSRAAFRCLTASGLQARLA-L---PWEAAAGAYDLVVLA---LPAGRGT 115 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTT----BEEEEEECBHHHHHHHHHTTCCCEEC-C---GGGSCTTCEEEEEEE---CCGGGCH
T ss_pred CcEEEecCCCCccccccCCC----CceEEEeCcHHHHHHHHHcCCCcccc-C---CccCCcCCCCEEEEE---CCcchhH
Confidence 58999999999877766532 26677766666655566677776331 1 122234679998843 12111
Q ss_pred -cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 124 -KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 124 -~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.....|.++.+.|+|||.+++...
T Consensus 116 ~~~~~~l~~~~~~l~~g~~i~~~g~ 140 (381)
T 3dmg_A 116 AYVQASLVAAARALRMGGRLYLAGD 140 (381)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 124678889999999999999874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=89.32 Aligned_cols=96 Identities=16% Similarity=0.043 Sum_probs=72.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-------------------CCC-eEEEeeccCCCCC
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-------------------GLP-AMIGSFASKQLPY 104 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-------------------~~~-~~~~~~d~~~Lpf 104 (458)
..+|||+|||+|.++..++++. ...+|+++|+++.+++.|+++ +.. +.+..+|+..+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 4699999999999999999863 234799999999999988765 333 6777777654321
Q ss_pred -CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 105 -PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 105 -p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
..++||+|++.- . .....++..+.+.|||||.++++.
T Consensus 127 ~~~~~fD~I~lDP-~----~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F----GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999542 1 123568999999999999988875
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6e-07 Score=81.47 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=74.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--cc-ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|.+.+. +|+-++.. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.+.++
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~ 106 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY-----DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVV 106 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESC
T ss_pred CeEEEEcCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcch
Confidence 5899999999999999984432 34444432 33333222 232 11 2223333 343 789999999988
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEecc--------------HHHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------------ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~--------------~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
|.... .-....+|-++-|+|+|||++++-+. .-..+++++++.. |++....
T Consensus 107 l~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 107 LMFLE----AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GGGSC----GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhhCC----HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 87652 22456789999999999999876321 1124677777777 8766554
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-06 Score=90.82 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcC---C--------------ccceEEEEcCCHHHHHHHHHc----CCC------eEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE---L--------------LTMCIANYEASGSQVQLTLER----GLP------AMIGS 96 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~---~--------------~~~~v~gvD~S~~~i~~A~er----~~~------~~~~~ 96 (458)
...+|||.+||+|.+...+++.- . ...+++|+|+++.+++.|+.+ +.. ..+..
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 34689999999999988776531 0 124799999999999999875 443 56777
Q ss_pred eccCCCC-CCCCCeeEEEeccccccccc------------c-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 97 FASKQLP-YPSLSFDMLHCARCGVDWDQ------------K-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 97 ~d~~~Lp-fp~~sFD~I~~~~~l~~~~~------------~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+...+ .+.+.||+|+++-.+..... + ...++..+.+.|||||++++..|
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 7765443 34578999999854332211 1 23689999999999999999986
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.3e-05 Score=76.28 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------CCCeEEEeeccCCC-CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQL-PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------~~~~~~~~~d~~~L-pfp~~sFD~ 111 (458)
..+++||=||-|.|...+.+++.. +..+++.+|+++..++.|++. ..++.+...|+... .-..++||+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 567899999999999999999753 346899999999999999875 34688888886654 345578999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+.-. .-..... ...+++.+.+.|+|||.++....
T Consensus 161 Ii~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 161 IISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EEESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 99642 1221111 13689999999999999998754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=85.72 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=88.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---ccc-cccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGV-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|||+|||.|.++.+|.....+-. +|+-+|-. ..+..+-+ .|+ +-+ ..|..+ ++ ++.+||+|.+.+
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~ 195 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYDLLTSNG 195 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEEEEECCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeEEEEECC
Confidence 5799999999999999841122211 33333432 33333322 333 212 233333 33 358999999988
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH---------------------------------------HHHH
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------------------------------RLIE 419 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~---------------------------------------~~~~ 419 (458)
++... .+.-....++-|+-|+|||||++++.+-. ...+
T Consensus 196 ~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYE---PDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGC---CCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhc---CCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 88766 33333345799999999999999987611 1367
Q ss_pred HHHHHHhhccceEEEEeeccCCCccEEEEEec
Q 012709 420 SARALTTRLKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 420 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
+++++++.-.++...........-.+++++|+
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 88888999899876655444444678889885
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.7e-06 Score=78.83 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-CCCeEEEeeccCCCCCCCC--CeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSL--SFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-~~~~~~~~~d~~~Lpfp~~--sFD~I~~~ 115 (458)
...+|||||||+|.++..|++++ ..+++++|+++.|++.++++ ..++.+..+|+..+++++. .| .|+++
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~-~vv~N 102 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL-KVVGN 102 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE-EEEEE
T ss_pred CcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc-EEEEE
Confidence 35699999999999999999874 34899999999999999887 2367899999999887652 33 55555
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.18 E-value=4.1e-06 Score=77.66 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=85.1
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----c--------cccccccccccCCCCCCcccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G--------FVGVLHDWCEAFPTYPRTYDL 373 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----g--------l~g~~~~~~~~~~~yp~t~dl 373 (458)
-.+|||+|||.|.++.+|.++.... +|+-+|-. ..+..+-++ | +-=+..|. +..+.-+.+||+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~ 105 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFE---QITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL-VYRDKRFSGYDA 105 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCC---EEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS-SSCCGGGTTCSE
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc-cccccccCCCCE
Confidence 3689999999999999998432112 33333432 333333322 1 11112233 222333468999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccHHH----------------------HHHHH----HHHhh
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARL----------------------IESAR----ALTTR 427 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~----------------------~~~~~----~~~~~ 427 (458)
|-+..++..+. .-.+..+|-|+-|+|||||.++...+... .++++ .++..
T Consensus 106 V~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 181 (219)
T 3jwg_A 106 ATVIEVIEHLD----ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEK 181 (219)
T ss_dssp EEEESCGGGCC----HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHH
T ss_pred EEEHHHHHhCC----HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHH
Confidence 99999888762 12345789999999999998886433221 23344 77777
Q ss_pred ccceEEEEeeccC-----CCccEEEEEec
Q 012709 428 LKWDARVIEIESN-----SDERLLICQKP 451 (458)
Q Consensus 428 ~~w~~~~~~~~~~-----~~~~~~~~~k~ 451 (458)
-.+++.....-+. ...++.|++|+
T Consensus 182 ~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 182 YGYSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp HTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred CCcEEEEEecCCccccCCCCeEEEEEecc
Confidence 7888877744332 23889999986
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-07 Score=86.67 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=60.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
.+|||+|||.|.++..|.+.... |+-+|-+ ..|..+-++.=|-..+.=.|.++.=+.+||+|.+...| ++
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~-----v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~-h~--- 111 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFER-----VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAM-HW--- 111 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSE-----EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCC-TT---
T ss_pred CCEEEEcCCCCHHHHHHHHhCCE-----EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeeh-hH---
Confidence 46999999999999999854443 3333432 33333333221222222234444435799999998887 34
Q ss_pred CCCCCcchhhhhhcccccCCceEEE
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
.+.+..+-|+-|+|||||.+++
T Consensus 112 ---~~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 112 ---FDLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp ---CCHHHHHHHHHHHEEEEEEEEE
T ss_pred ---hhHHHHHHHHHHHcCCCCEEEE
Confidence 2456789999999999999987
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.1e-06 Score=75.03 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=78.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 387 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~ 387 (458)
.+|||+|||.|.++..|. ..|..+-+.+. .+-+.. .|. +.++.-+.+||+|.+..++. +
T Consensus 69 ~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~------~~~~~~------~d~-~~~~~~~~~fD~v~~~~~l~-~---- 127 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR---NPVHCFDLASL------DPRVTV------CDM-AQVPLEDESVDVAVFCLSLM-G---- 127 (215)
T ss_dssp SCEEEETCTTCHHHHHCC---SCEEEEESSCS------STTEEE------SCT-TSCSCCTTCEEEEEEESCCC-S----
T ss_pred CeEEEECCcCCHHHHHhh---ccEEEEeCCCC------CceEEE------ecc-ccCCCCCCCEeEEEEehhcc-c----
Confidence 579999999999988874 23333332222 111111 121 11232247899999887773 2
Q ss_pred CCCCcchhhhhhcccccCCceEEEeccHH---HHHHHHHHHhhccceEEEEeeccCCCccEEEEEec
Q 012709 388 HRCSTLDIFTEIDRILRPEGWVIIRDTAR---LIESARALTTRLKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 388 ~~c~~~~~~~e~drilrp~g~~~~~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
-....+|-|+-|+|+|||++++.+... ..+++.+++....++....+.. .+.--+++++|.
T Consensus 128 --~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~~~~~~~~~~k~ 191 (215)
T 2zfu_A 128 --TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLT-NSHFFLFDFQKT 191 (215)
T ss_dssp --SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECC-STTCEEEEEEEC
T ss_pred --cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecC-CCeEEEEEEEec
Confidence 245678999999999999999976543 4578888888888886654432 223567788875
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-06 Score=80.99 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=62.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc--cccccccccccCCCCCCccccccc-ccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHA-EGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg--l~g~~~~~~~~~~~yp~t~dl~h~-~~~~~~~ 383 (458)
.+|||+|||.|.++..|.+... +|+-++.. ..+..+-++. +--+..|.. .++. +.+||+|.+ .+++...
T Consensus 42 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 42 SSLLDVACGTGTHLEHFTKEFG-----DTAGLELSEDMLTHARKRLPDATLHQGDMR-DFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp CEEEEETCTTSHHHHHHHHHHS-----EEEEEESCHHHHHHHHHHCTTCEEEECCTT-TCCC-SSCEEEEEECTTGGGGC
T ss_pred CeEEEecccCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-Hccc-CCCCcEEEEcCchHhhc
Confidence 6899999999999999984422 34444443 4444444331 111122332 2333 689999994 5577655
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+.-....+|-++-|+|+|||.+++.
T Consensus 115 ---~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 115 ---KTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp ---CSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred ---CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 22344567899999999999999996
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-06 Score=83.39 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=57.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH-------HHHHHHHHc----CC--CeEEEeeccCCC-C-CCC--C
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG-------SQVQLTLER----GL--PAMIGSFASKQL-P-YPS--L 107 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~-------~~i~~A~er----~~--~~~~~~~d~~~L-p-fp~--~ 107 (458)
..+|||+|||+|.++..+++.+. +|+++|+++ .+++.|+++ +. ++.+..+|+..+ + +++ +
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred cCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 46899999999999999998753 899999999 999988765 22 488888887663 3 444 6
Q ss_pred CeeEEEeccccc
Q 012709 108 SFDMLHCARCGV 119 (458)
Q Consensus 108 sFD~I~~~~~l~ 119 (458)
+||+|++.-.+.
T Consensus 161 ~fD~V~~dP~~~ 172 (258)
T 2r6z_A 161 KPDIVYLDPMYP 172 (258)
T ss_dssp CCSEEEECCCC-
T ss_pred CccEEEECCCCC
Confidence 899999986543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=84.62 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=64.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
..|||+|||.|+++..|.+. .+. +|+-++-. ..+..+-++ |+..-..-.+..+..+|.+||+|.+.++|..
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEK-YDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CEEEEECCcccHHHHHHHHH-cCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 57999999999999888732 122 44444443 455544443 4322111112222234589999999998887
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
. . .-....+|-|+-|+|||||.+++.+
T Consensus 142 ~---~-~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 F---G-HERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp T---C-TTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred c---C-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6 2 2456788999999999999999853
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.13 E-value=3e-06 Score=75.26 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=82.5
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccccccccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-.+|||+|||.|.++..|. ... . +|+-++-. ..+..+-++ .+--+..| .+++ +.+||+|.+..++...
T Consensus 18 ~~~vLDiG~G~G~~~~~l~--~~~-~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~--~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLL--EFA-T--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIP--DNSVDFILFANSFHDM 88 (170)
T ss_dssp CEEEEEETCTTCTTHHHHH--TTE-E--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSC--TTCEEEEEEESCSTTC
T ss_pred CCeEEEECCCCCHHHHHHH--hhc-C--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCC--CCceEEEEEccchhcc
Confidence 3789999999999999998 443 1 55555553 455555444 12222223 3443 3799999999888766
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccHH-------------HHHHHHHHHhhccceEEEEeeccCCCccEEEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-------------LIESARALTTRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
. +...+|-|+-|+|+|||.+++.+-.. ..++++++++ .|+..... +..+..-.+++.|
T Consensus 89 ---~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~-~~~~~~~~l~~~~ 159 (170)
T 3i9f_A 89 ---D---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF-NPTPYHFGLVLKR 159 (170)
T ss_dssp ---S---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE-CSSTTEEEEEEEE
T ss_pred ---c---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc-CCCCceEEEEEec
Confidence 2 45688999999999999999963211 1456677766 66544332 2233355666666
Q ss_pred c
Q 012709 451 P 451 (458)
Q Consensus 451 ~ 451 (458)
+
T Consensus 160 ~ 160 (170)
T 3i9f_A 160 K 160 (170)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.8e-07 Score=83.63 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=75.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccccccccccc---ccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWC---EAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~---~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
.+|||+|||.|.++.+|.+.+.. |+-++-. ..+..+-++ +--+..|.. ++|+ +.+||+|.+.+++...
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~-----v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~--~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGIE-----SIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLP--DKYLDGVMISHFVEHL 114 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTCC-----EEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSC--TTCBSEEEEESCGGGS
T ss_pred CeEEEEeCCCCHHHHHHHhCCCc-----EEEEECCHHHHHHHHhh-cceeeccHHHHhhhcC--CCCeeEEEECCchhhC
Confidence 68999999999999999854333 3333433 455555555 211112222 2444 3799999999998876
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH-------------------HHHHHHHHHHhhccceEE
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------------RLIESARALTTRLKWDAR 433 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-------------------~~~~~~~~~~~~~~w~~~ 433 (458)
. .-.+..+|-|+-|+|+|||++++.... -..+++++++..-.++..
T Consensus 115 ---~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 115 ---D-PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp ---C-GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred ---C-cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 2 234568899999999999999985321 012566677776666643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.4e-06 Score=76.55 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=62.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-cccc-ccccccCCCCCCccccccccc-c
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEG-L 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~-~~~~~~~~~yp~t~dl~h~~~-~ 379 (458)
.+|||+|||.|.++..|.+... +|+-++.. ..+..+-++ |+ +-.+ .|.. .++ ++.+||+|.+.+ +
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDS 111 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTG
T ss_pred CeEEEeCCCCCHHHHHHHHCCC-----cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cCC-ccCCceEEEEcCcc
Confidence 5899999999999999984422 34444443 334333332 22 1111 2222 233 347899999987 8
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
|..+ .+.-....+|-++-|+|+|||.+++
T Consensus 112 l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 112 TNYI---IDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGC---CSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccc---CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8766 2223566889999999999999998
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-06 Score=84.71 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=65.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cccc----ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g----~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|+++..|.+. .+. +|+-++-. ..+..+-++ |+-+ +..|+.+ + +.+||+|.+.+
T Consensus 74 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~~~fD~v~~~~ 145 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAE-YDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-F---DEPVDRIVSLG 145 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-C---CCCCSEEEEES
T ss_pred CEEEEeeccCcHHHHHHHHh-CCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-c---CCCccEEEEcc
Confidence 58999999999999999833 132 34444443 455544333 4421 2233332 3 78999999999
Q ss_pred cccccccCC---CCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHR---HRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~---~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+|....... ..-....+|-|+-|+|||||.+++.+
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 988762100 12445688999999999999999853
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.6e-06 Score=78.80 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=85.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--cc-ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++.+|.+...+-. .|+-++.. ..+..+-++ |+ +- +..|.. .++.-..+||+|.+.++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCSSCSSCEEEEEEESC
T ss_pred CEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCCCCCCCeeEEEeehh
Confidence 5899999999999999975421111 23333332 333333222 22 11 222332 22322368999999998
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccH-------------HHHHHHHHHHhhccceEEEEeeccCCCccEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------RLIESARALTTRLKWDARVIEIESNSDERLL 446 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 446 (458)
+..+ . +...+|-|+-|+|+|||.+++.+-. ...++++++++.-.++...... ..+...++
T Consensus 116 l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~~~ 188 (219)
T 3dh0_A 116 FHEL---S---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE-VGKYCFGV 188 (219)
T ss_dssp GGGC---S---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE-ETTTEEEE
T ss_pred hhhc---C---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe-eCCceEEE
Confidence 8876 2 3467899999999999999996411 1257888889988898554432 23346677
Q ss_pred EEEec
Q 012709 447 ICQKP 451 (458)
Q Consensus 447 ~~~k~ 451 (458)
+++|+
T Consensus 189 ~~~k~ 193 (219)
T 3dh0_A 189 YAMIV 193 (219)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 77775
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=88.28 Aligned_cols=106 Identities=15% Similarity=0.066 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-----------------------------------------CccceEEEEcCCHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-----------------------------------------LLTMCIANYEASGSQV 82 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-----------------------------------------~~~~~v~gvD~S~~~i 82 (458)
...+|||.+||+|.++..++... .+...++|+|+++.|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 44689999999999988776532 0124799999999999
Q ss_pred HHHHHc----CCC--eEEEeeccCCC--CCCCCCeeEEEecccccc-ccc--cHHH---HHHHHHhcccCCcEEEEEeCC
Q 012709 83 QLTLER----GLP--AMIGSFASKQL--PYPSLSFDMLHCARCGVD-WDQ--KDGI---LLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 83 ~~A~er----~~~--~~~~~~d~~~L--pfp~~sFD~I~~~~~l~~-~~~--~~~~---~L~ei~RvLkPGG~liis~~~ 148 (458)
+.|+++ |+. +.+...|+..+ |..+++||+|+|+--.-. +.. +... .|.++.+.+.|||.+++..+.
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~ 349 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSAS 349 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 999877 543 78889998877 444458999999843211 111 1122 344555566689999998764
Q ss_pred C
Q 012709 149 T 149 (458)
Q Consensus 149 ~ 149 (458)
.
T Consensus 350 ~ 350 (703)
T 3v97_A 350 P 350 (703)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-06 Score=81.38 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=62.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc---ccccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r---gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
.+|||+|||.|.++..|.+... +|+-+|-. ..+..+-++ ++--+..|..+.+ .+.+||+|++.+++...
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN-----DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--LPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS-----CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--CSSCEEEEEEESCGGGC
T ss_pred CcEEEECCCCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--cCCcccEEEEhhHHHhh
Confidence 3599999999999999984433 33333332 333333333 2211222333332 35799999999998876
Q ss_pred ccCCCCCCcchhhhhhc-ccccCCceEEEec
Q 012709 384 SGHRHRCSTLDIFTEID-RILRPEGWVIIRD 413 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~d-rilrp~g~~~~~d 413 (458)
. +...+|-|+- |+|||||++++.+
T Consensus 117 ---~---~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 117 ---D---DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp ---S---SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---c---CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 2468899999 9999999999954
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.6e-06 Score=75.67 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=85.0
Q ss_pred eEEeecccc-chhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhc----ccc-cccc-ccccccCCCCC-Ccccccccc
Q 012709 308 RNVLDMNAH-FGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGF-VGVL-HDWCEAFPTYP-RTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~-~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g~~-~~~~~~~~~yp-~t~dl~h~~ 377 (458)
.+|||+||| .|.++.+|... .. +|+-++-. ..+..+-+ .|+ +-++ .|+ +.+..+| .+||+|-++
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNC-----KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCC-----EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEEC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEEC
Confidence 689999999 99999988743 22 34444433 33333222 243 2222 232 1122333 799999987
Q ss_pred ccccccccC-------------CCCCCcchhhhhhcccccCCceEEE--eccHHHHHHHHHHHhhccceEEEEeeccCCC
Q 012709 378 GLLSLESGH-------------RHRCSTLDIFTEIDRILRPEGWVII--RDTARLIESARALTTRLKWDARVIEIESNSD 442 (458)
Q Consensus 378 ~~~~~~~~~-------------~~~c~~~~~~~e~drilrp~g~~~~--~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 442 (458)
-.|...... .....+..++-++-|+|+|||.+++ ....+..+++.+.++...|++.......+..
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~ 210 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTR 210 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCe
Confidence 555332100 0011135788999999999999998 4455678888999999999988776655443
Q ss_pred -ccEEEEEec
Q 012709 443 -ERLLICQKP 451 (458)
Q Consensus 443 -~~~~~~~k~ 451 (458)
-.+++.+|.
T Consensus 211 ~~~~l~f~~~ 220 (230)
T 3evz_A 211 WRHSLIFFKG 220 (230)
T ss_dssp CEEEEEEECC
T ss_pred EEEEEEEecc
Confidence 667777663
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-06 Score=90.26 Aligned_cols=150 Identities=9% Similarity=0.068 Sum_probs=100.4
Q ss_pred CccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCC
Q 012709 261 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTI 340 (458)
Q Consensus 261 ~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~ 340 (458)
....|...+..|......+...+-..+... .=.+|||+|||.|.++..|.+ ... +|+-+|
T Consensus 77 ~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~VLDiGcG~G~~~~~l~~--~g~---~v~gvD 136 (416)
T 4e2x_A 77 VYPYHSSGSSVMREHFAMLARDFLATELTG---------------PDPFIVEIGCNDGIMLRTIQE--AGV---RHLGFE 136 (416)
T ss_dssp TCCCCGGGCHHHHHHHHHHHHHHHHTTTCS---------------SSCEEEEETCTTTTTHHHHHH--TTC---EEEEEC
T ss_pred CccCcCcCCHHHHHHHHHHHHHHHHHhCCC---------------CCCEEEEecCCCCHHHHHHHH--cCC---cEEEEC
Confidence 344555667788888877765432232211 235899999999999999984 333 555555
Q ss_pred CC-CCchhhhcccccccccccc----ccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 341 GT-NHLPMILDRGFVGVLHDWC----EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 341 ~~-~~l~~~~~rgl~g~~~~~~----~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
-+ +.+..+-++|+-.....+. +.++.-+.+||+|.+.++|..+ . +...+|-|+-|+|+|||++++....
T Consensus 137 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~---~---d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 137 PSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHI---P---YVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp CCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGC---T---THHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhc---C---CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 54 6777777776533221111 1112113789999999999887 3 5778999999999999999996321
Q ss_pred ----------H----------HHHHHHHHHhhccceEEEEe
Q 012709 416 ----------R----------LIESARALTTRLKWDARVIE 436 (458)
Q Consensus 416 ----------~----------~~~~~~~~~~~~~w~~~~~~ 436 (458)
. ..+.++.+++.-.+++....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 211 LGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp HHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred hHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence 0 13578888888888765443
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.5e-06 Score=89.62 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=67.9
Q ss_pred CCEEEEECCCCchhHHHHhhcC------------CccceEEEEcCCHHHHHHHHHc---C--CCeEEEeeccCCCCCC--
Q 012709 45 VRTILDIGCGYGSFGAHLFSKE------------LLTMCIANYEASGSQVQLTLER---G--LPAMIGSFASKQLPYP-- 105 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~------------~~~~~v~gvD~S~~~i~~A~er---~--~~~~~~~~d~~~Lpfp-- 105 (458)
...|||||||+|.++...+... ....+|+++|.++.++..++.+ + -.+.++.++++++.+|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 3579999999999875432211 1234899999998766444332 3 3688999999888663
Q ss_pred ---CCCeeEEEecccccccc--ccHHHHHHHHHhcccCCcEEE
Q 012709 106 ---SLSFDMLHCARCGVDWD--QKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 106 ---~~sFD~I~~~~~l~~~~--~~~~~~L~ei~RvLkPGG~li 143 (458)
.+.+|+|+|=.. -.+. +-....|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 478999998533 2221 122358888899999999754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-06 Score=79.28 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=66.3
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----ccccc-ccccccCCCCCCcccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.-.+|||+|||.|.++..|.+. . -+|+-++-. ..+..+-++. -+-++ .|. +.++ -+.+||+|.+.++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~--~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPH--C---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI-LQFS-TAELFDLIVVAEV 123 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGG--E---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT-TTCC-CSCCEEEEEEESC
T ss_pred CCCcEEEEcCCCCHHHHHHHHc--C---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch-hhCC-CCCCccEEEEccH
Confidence 4578999999999999999843 2 255555543 4444443332 12222 222 2233 3579999999998
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
|... .+.-.+..+|-++-|+|+|||++++.+
T Consensus 124 l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 124 LYYL---EDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp GGGS---SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhC---CCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8877 333444577999999999999999953
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.4e-06 Score=75.94 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=63.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cc-ccccccccCCCCCCcccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
+|||+|||.|.++..|.+ .+- .+|+-++-. ..+..+-++ |+ +- +..|..+ ++.-+.+||+|.+.++
T Consensus 46 ~vLdiG~G~G~~~~~l~~--~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAK--QSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN-IPIEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEETCTTSHHHHHHHH--HSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB-CSSCTTCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHH--cCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH-CCCCcccccEEEECch
Confidence 899999999999999984 322 244445543 444444333 33 12 2223322 3322479999999988
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..+ -....+|-|+-|+|||||.+++.+
T Consensus 121 l~~~------~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 121 VFFW------EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GGGC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hhhc------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 8765 234678999999999999999963
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=73.27 Aligned_cols=141 Identities=11% Similarity=0.001 Sum_probs=77.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCC---CCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPT---YPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~---yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++.+|.+..... +|+-++-. ..+..+-+ .|+ -=+..|..++++. .+.+||+|-++
T Consensus 32 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 32 TRVIDVGTGSGCIAVSIALACPGV---SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp EEEEEEESSBCHHHHHHHHHCTTE---EEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CEEEEecCCHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 689999999999999998542222 23333322 22222221 122 2223455554432 23789999986
Q ss_pred ccccccc------cC----CCCCC----------cchhhhhhcccccCCce-EEEeccHHHHHHHHHHHh--hccceEEE
Q 012709 378 GLLSLES------GH----RHRCS----------TLDIFTEIDRILRPEGW-VIIRDTARLIESARALTT--RLKWDARV 434 (458)
Q Consensus 378 ~~~~~~~------~~----~~~c~----------~~~~~~e~drilrp~g~-~~~~d~~~~~~~~~~~~~--~~~w~~~~ 434 (458)
--|.... .. ..... +..++-++-|+|+|||+ +++.-.....+++.+++. .-.|....
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~ 188 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVR 188 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEE
Confidence 4442210 00 00011 16788899999999999 777544445677777777 66665333
Q ss_pred EeeccCCCccEEEEEec
Q 012709 435 IEIESNSDERLLICQKP 451 (458)
Q Consensus 435 ~~~~~~~~~~~~~~~k~ 451 (458)
...+..+.+++++++|.
T Consensus 189 ~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 189 KVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp EEECTTSCEEEEEEEEC
T ss_pred EEEecCCCEEEEEEEEc
Confidence 32333444888888874
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.2e-05 Score=81.01 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcC--CccceEEEEcCCHHHHHHHHHc----CC---Ce
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLER----GL---PA 92 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~--~~~~~v~gvD~S~~~i~~A~er----~~---~~ 92 (458)
....+.+.+.+.... ......+|||.+||+|.+...+++.- ....+++|+|+++.+++.|+.+ ++ +.
T Consensus 203 ~~Vv~lmv~ll~~~~----~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~ 278 (542)
T 3lkd_A 203 QPVAKLMTQIAFLGR----EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQ 278 (542)
T ss_dssp HHHHHHHHHHHHTTC----TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHHhccc----CCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCcc
Confidence 345555565554211 02345699999999999888776641 1245899999999999999865 54 45
Q ss_pred EEEeeccCCC--C-CCCCCeeEEEeccccc-ccc--------------------cc-HHHHHHHHHhccc-CCcEEEEEe
Q 012709 93 MIGSFASKQL--P-YPSLSFDMLHCARCGV-DWD--------------------QK-DGILLLEVDRVLK-PGGYFVWTS 146 (458)
Q Consensus 93 ~~~~~d~~~L--p-fp~~sFD~I~~~~~l~-~~~--------------------~~-~~~~L~ei~RvLk-PGG~liis~ 146 (458)
.+..+|+... | ++...||+|+++--+. .|. .+ .-.++..+.+.|+ |||++++..
T Consensus 279 ~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 279 FLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred ceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 6788887665 3 4567899999973221 110 00 1247899999999 999999998
Q ss_pred C
Q 012709 147 P 147 (458)
Q Consensus 147 ~ 147 (458)
|
T Consensus 359 P 359 (542)
T 3lkd_A 359 P 359 (542)
T ss_dssp E
T ss_pred c
Confidence 7
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-06 Score=81.82 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=78.7
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----ccc-ccccccccCCCCCCccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVG-VLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g-~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-.+|||+|||.|.++..|.+.. .-+|+-++-. ..+..+-++- -+- +..|..+ ++.-+.+||+|.+..++
T Consensus 94 ~~~vLDiG~G~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 94 TSRALDCGAGIGRITKNLLTKL----YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET-ATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHH----CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG-CCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCcCHHHHHHHHhh----cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH-CCCCCCCeEEEEEcchh
Confidence 4689999999999999987432 1123334432 3444443331 111 2233332 33334799999999888
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEee
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
..+ .. -....+|-++-|+|||||++++.+.. ...++++++++.-.++......
T Consensus 169 ~~~---~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 169 IYL---TD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GGS---CH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred hhC---CH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 766 11 23567899999999999999997631 1237788888888887655443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-06 Score=78.27 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-----ccccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-----gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|||+|||.|.++..|.+.... +|+-++-. ..+..+-++ .+--+..|..+ ++.-+.+||+|-+.++|.
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~----~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP----NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC----CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC----cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchh
Confidence 57999999999999999844321 23333322 222222222 11112223322 222237899999998887
Q ss_pred ccccCC---------CCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHH--hhccceEEEEeeccCCCccEEEEEe
Q 012709 382 LESGHR---------HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALT--TRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 382 ~~~~~~---------~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
...... +......+|-|+-|+|+|||.+++.+-... ...+.+. ....|+.......++..-.+.+++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLRHATYGSGFHFHLYLMHK 197 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEEEEEESGGGCEEEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEEEEEecCcceEEEEEEEe
Confidence 651000 011346889999999999999999765321 1122332 3446887665544433344555554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.9e-06 Score=82.58 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQL 102 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~L 102 (458)
...+|||+|||+|.++..++++. +..+|+++|.|+.|++.|+++. .++.+..+|...+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l 87 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREA 87 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHH
Confidence 34699999999999999999874 3569999999999999998873 3455555555444
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=70.77 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=85.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
..|||+|||.|.++.+|. ..- +|+-+|-. ..+.. ...+--+..|..++++. .+||+|-++..|......
T Consensus 25 ~~vLD~GcG~G~~~~~l~--~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLR--KRN----TVVSTDLNIRALES--HRGGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CEEEEETCTTCHHHHHHT--TTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCC
T ss_pred CeEEEeccCccHHHHHHH--hcC----cEEEEECCHHHHhc--ccCCeEEECChhhhccc--CCCCEEEECCCCccCCcc
Confidence 489999999999999999 443 55555543 33333 22332233455454443 799999988776543100
Q ss_pred ---CCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccceEEEEeeccCCCccEEEEE
Q 012709 387 ---RHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIEIESNSDERLLICQ 449 (458)
Q Consensus 387 ---~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 449 (458)
........++-++=|.| |||.+++-. .....+++.++++...|+.........+.+++++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 01122345666777777 999999864 345578888999999999877766666667776654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.9e-05 Score=84.55 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=73.1
Q ss_pred CEEEEECCCCchhHHHHhhcCC--------------ccceEEEEcCCHHHHHHHHHc----CCCeEE--EeeccCCCC-C
Q 012709 46 RTILDIGCGYGSFGAHLFSKEL--------------LTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLP-Y 104 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~--------------~~~~v~gvD~S~~~i~~A~er----~~~~~~--~~~d~~~Lp-f 104 (458)
.+|||.+||+|.+...+++.-. ...+++|+|+++.+++.|+.+ ++...+ ..+|+...+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 3899999999998877643200 035899999999999999865 544444 556654443 5
Q ss_pred CCCCeeEEEecccccc--ccc-------------------------c-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 105 PSLSFDMLHCARCGVD--WDQ-------------------------K-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 105 p~~sFD~I~~~~~l~~--~~~-------------------------~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++..||+|+++--+.. |.. + .-.++..+.+.|+|||++++..|
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 5678999999744331 110 0 11588999999999999999986
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.96 E-value=9.1e-06 Score=78.51 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=53.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---CeEEEeeccCCCCCCC-----CCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPS-----LSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---~~~~~~~d~~~Lpfp~-----~sFD~I~~~ 115 (458)
...+|||||||+|.++. +.. + ...+++++|+++.|++.++++.. ++.+..+|+..+++++ +..|.|+++
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred CcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEEC
Confidence 34689999999999999 654 3 21239999999999999998742 6888999988887653 234677776
Q ss_pred c
Q 012709 116 R 116 (458)
Q Consensus 116 ~ 116 (458)
.
T Consensus 98 l 98 (252)
T 1qyr_A 98 L 98 (252)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-06 Score=80.79 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=64.2
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccc-cccccccCCCCCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGV-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
-.+|||+|||.|.++.+|.+... +|+-++-. ..+..+-+ +|+ +-+ ..|. +.++.-+.+||+|.+..
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRY 95 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEES
T ss_pred CCEEEEEccCcCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECC
Confidence 36899999999999999984432 44444443 33433322 233 222 2232 33443347999999998
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
++..+ . +...+|-|+-|+|||||++++.+
T Consensus 96 ~l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 96 AAHHF---S---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp CGGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhc---c---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 88766 2 35788999999999999999853
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-06 Score=80.81 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---c-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++.+|.+.- .. +|+-++-. ..+..+-+ .|+- - ...|+.+ ++. +.+||+|.+.+
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~-~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDH-GI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACVG 111 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHT-CC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHhc-CC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEECC
Confidence 589999999999999887431 21 23333432 33333322 3431 1 2223332 333 68999999988
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
++..+ . +...+|-|+-|+|||||.+++.+
T Consensus 112 ~~~~~---~---~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 112 ATWIA---G---GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CGGGT---S---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ChHhc---C---CHHHHHHHHHHHcCCCeEEEEec
Confidence 77655 2 46788999999999999999964
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.8e-06 Score=81.98 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=64.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|.++..|.+.- .. +|+-++-. ..+..+-++ |+-....-.+..+..+|.+||+|.+.++|..
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~-~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERF-DV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHH-CC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CEEEEEcccchHHHHHHHHHC-CC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 479999999999999998430 22 34444443 444444433 4422111112222334589999999988876
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
. . .-....+|-|+-|+|+|||.+++.+
T Consensus 168 ~---~-~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 168 F---G-HENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp T---C-GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred c---C-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5 1 1345678999999999999999853
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.6e-06 Score=78.15 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=62.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-------ccccccccccCCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-------VGVLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-------~g~~~~~~~~~~~yp~t~dl~h 375 (458)
.+|||+|||.|.++.+|.+... +|+-++-. ..+..+-+ .|+ +-.+..=.+.++.-+.+||+|.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY-----SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 5899999999999999984433 34444432 33333322 232 1111111122333357999999
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..++..+ .+.-....+|-++-|+|||||.+++.+
T Consensus 107 ~~~~l~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 107 MQAFLTSV---PDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EESCGGGC---CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhcC---CCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 99888876 333333478999999999999999863
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.93 E-value=3e-06 Score=81.42 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=62.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|.+..... .|+-++.. ..+..+-++ |+ +-.. .|.. .++.-+.+||+|++..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIF-SLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCSCTTCEEEEEEESC
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCCCCCCeeEEEEech
Confidence 689999999999999998542122 23333332 333333322 33 1112 2322 23433579999999998
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..+ . +...+|-++-|+|||||++++.+
T Consensus 115 l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHL---Q---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGC---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8876 2 24578999999999999999964
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-06 Score=80.96 Aligned_cols=95 Identities=23% Similarity=0.365 Sum_probs=63.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---ccc-cccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGV-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|.+. .+. +|+-++-. ..+..+-+ .|+ +-+ ..|.. .++.-+.+||+|.+.+
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRK-FGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHH-hCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cCCCCCCCEeEEEecc
Confidence 68999999999999999833 122 44444443 44444333 343 112 22322 2332247999999999
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
++..+ .+ ...+|-|+-|+|||||.+++.+
T Consensus 159 ~l~~~---~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 159 AFLHS---PD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp CGGGC---SC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhc---CC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 88877 33 5788999999999999999864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.1e-06 Score=76.39 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=61.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-ccc-cccccccCCCCCCccccccccc-c
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGV-LHDWCEAFPTYPRTYDLVHAEG-L 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~-~~~~~~~~~~yp~t~dl~h~~~-~ 379 (458)
.+|||+|||.|.++..|. .. .+|+-++-. ..+..+-++ |. +-. -.|..+ ++ .+.+||+|-+.. +
T Consensus 35 ~~vLdiG~G~G~~~~~l~--~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~ 106 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLA--DH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-LE-LPEPVDAITILCDS 106 (243)
T ss_dssp CEEEEESCTTCHHHHHHT--TT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-CC-CSSCEEEEEECTTG
T ss_pred CeEEEecCCCCHHHHHHh--hC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-cC-CCCCcCEEEEeCCc
Confidence 689999999999999998 44 245555543 444443332 21 111 122222 22 358999999775 6
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+..+ .+.-....+|-++-|+|+|||.+++
T Consensus 107 ~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 107 LNYL---QTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GGGC---CSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhc---CCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 6655 3344566789999999999999998
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=9.8e-06 Score=74.34 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=73.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cccc--c-cccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g--~-~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++.+|. ..+. .+|+-++.. ..+..+-++ |+-. + -.|+ ++..+.+||+|.++..
T Consensus 62 ~~vLDiG~G~G~~~~~l~--~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~fD~i~~~~~ 134 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAH--KLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSL---LADVDGKFDLIVANIL 134 (205)
T ss_dssp CEEEEETCTTSHHHHHHH--HTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST---TTTCCSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHH--HCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc---cccCCCCceEEEECCc
Confidence 589999999999999988 3332 133444433 334433332 4322 2 2222 2233589999998766
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+.. +..++-++-|+|+|||++++.+ .....+.+.+++....++.....
T Consensus 135 ~~~---------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 135 AEI---------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp HHH---------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred HHH---------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 643 3467999999999999999863 33446777788887777765443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.91 E-value=3.5e-06 Score=80.36 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=63.0
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---cccccccccCCCCCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
-.+|||+|||.|.++..|.+... .|+-+|.. ..+..+-+ +|+- -+..|.. .++.-+.+||+|.+..
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMPFTDERFHIVTCRI 111 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHH-hCCCCCCCEEEEEEhh
Confidence 46899999999999999984432 44444543 44444332 2331 1222332 2332237999999988
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
++..+ . +...+|-|+-|+|||||++++.
T Consensus 112 ~l~~~---~---d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 112 AAHHF---P---NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CGGGC---S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHhc---C---CHHHHHHHHHHHcCCCCEEEEE
Confidence 88766 2 4568899999999999999985
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.91 E-value=6.6e-06 Score=84.97 Aligned_cols=68 Identities=16% Similarity=0.036 Sum_probs=56.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CC-CeEEEeeccCCC-CC-CCCCeeEEEec
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GL-PAMIGSFASKQL-PY-PSLSFDMLHCA 115 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~-~~~~~~~d~~~L-pf-p~~sFD~I~~~ 115 (458)
..+|||+|||+|..+..|++.+. +|+++|+|+.|++.|+++ +. ++.+..+|+... +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 47999999999999999998753 899999999999999876 43 578888887763 32 34589999985
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4e-06 Score=81.27 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cccc-------ccccccccCC---CCCCccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG-------VLHDWCEAFP---TYPRTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g-------~~~~~~~~~~---~yp~t~d 372 (458)
.+|||+|||.|.++..|.+. .. +|+-+|-. ..+..+-++ +.-+ .-.|+.+ ++ .-+.+||
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~--~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD 132 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEE--GF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFD 132 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHT--TC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEE
T ss_pred CEEEEecCCCCHHHHHHHHC--CC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeE
Confidence 58999999999999999844 32 55666654 555555432 1110 1122222 11 2247999
Q ss_pred ccccc-ccccccccCCC----CCCcchhhhhhcccccCCceEEEec
Q 012709 373 LVHAE-GLLSLESGHRH----RCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 373 l~h~~-~~~~~~~~~~~----~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+|++. .+|..+ .+ .-....+|-|+-|+|||||++++..
T Consensus 133 ~V~~~g~~l~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 133 AVICLGNSFAHL---PDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEECTTCGGGS---CCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcChHHhhc---CccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998 677766 22 2336678999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=75.28 Aligned_cols=122 Identities=18% Similarity=0.169 Sum_probs=77.2
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc------ccc-cccccccCCCCCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF------VGV-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl------~g~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
-.+|||+|||.|.++..|. .... -+|+-++-. ..+..+-++.- +-+ ..|. +.++.-+.+||+|.+..
T Consensus 80 ~~~vLDiGcG~G~~~~~l~--~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLL--LPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CSEEEEETCTTTHHHHHTT--TTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHH--HhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcc
Confidence 3689999999999999988 3321 133333432 33333322210 111 2232 23343345899999998
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH---------------HHHHHHHHHHhhccceEEEEee
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~---------------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
++..+. + -.+..+|-|+-|+|+|||++++.+.. ...+++++++....++......
T Consensus 155 ~l~~~~---~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 155 VIGHLT---D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp CGGGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhhCC---H-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 887662 1 12457899999999999999996531 1367888888888888665543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.1e-05 Score=72.57 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=81.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc---ccccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r---gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
.+|||+|||.|.++..|.++.. +|+-++-. ..+..+-++ .+--+..|..+ ++ ++.+||+|.+.++|..+
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGR-----TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHL 119 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGS
T ss_pred CeEEEeCCCCCHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcC
Confidence 6899999999999999984422 34444433 334443333 22112223322 22 23899999999888766
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH----H---------------------------HHHHHHHHHhhccceE
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----R---------------------------LIESARALTTRLKWDA 432 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----~---------------------------~~~~~~~~~~~~~w~~ 432 (458)
. +. ....+|-|+-|+|||||.+++.+.. . ..++++++++.-.+++
T Consensus 120 ~---~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 195 (220)
T 3hnr_A 120 T---DD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV 195 (220)
T ss_dssp C---HH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEE
T ss_pred C---hH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEE
Confidence 2 11 1134899999999999999996411 1 1367778888888876
Q ss_pred EEEeeccCCCccEEEEEec
Q 012709 433 RVIEIESNSDERLLICQKP 451 (458)
Q Consensus 433 ~~~~~~~~~~~~~~~~~k~ 451 (458)
...... +..=++.++|+
T Consensus 196 ~~~~~~--~~~w~~~~~~~ 212 (220)
T 3hnr_A 196 TFTRLN--HFVWVMEATKQ 212 (220)
T ss_dssp EEEECS--SSEEEEEEEEC
T ss_pred EEeecc--ceEEEEeehhh
Confidence 655432 22445555554
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.4e-06 Score=76.04 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=63.2
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCC-CCccccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLES 384 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~y-p~t~dl~h~~~~~~~~~ 384 (458)
-.+|||+|||.|.++.+|. ..+ .+|+-++-. ..+..+-++.---+..|..+....+ +.+||+|.+.+++..+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~--~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~- 106 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIK--ENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL- 106 (230)
T ss_dssp CSEEEEETCTTSHHHHHHH--TTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGS-
T ss_pred CCcEEEeCCCCCHHHHHHH--hcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhc-
Confidence 3689999999999999999 444 244444443 3344443333111122332211122 3799999999888776
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. +...+|-++-|+|+|||++++.
T Consensus 107 --~---~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 107 --F---DPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp --S---CHHHHHHHTGGGEEEEEEEEEE
T ss_pred --C---CHHHHHHHHHHHcCCCCEEEEE
Confidence 2 3468899999999999999985
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.89 E-value=4.2e-06 Score=75.05 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=72.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-----ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-----VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-----~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++.+|.+... +|+-++-. ..+..+-++ |+ --+..|+.+.++ +.+||+|.++
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 5899999999999999984322 33434432 333333322 32 123345555444 5789999987
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~~ 436 (458)
..|..- .-.+..++-++-|+|+|||.+++.+.. ....++.+.++..-+++.+..
T Consensus 127 ~~~~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (194)
T 1dus_A 127 PPIRAG-----KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp CCSTTC-----HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEE
T ss_pred CCcccc-----hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEe
Confidence 665421 123457899999999999999986443 334445555555544555544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.1e-05 Score=70.51 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=74.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc--cccccccccccCCCCCCcccccccc-cccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAE-GLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg--l~g~~~~~~~~~~~yp~t~dl~h~~-~~~~~~ 383 (458)
.+|||+|||.|.++..|.+.+. +|+-++.. ..+..+-++. +--+..|..+ ++.-+.+||+|.++ .++...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH-----DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGS
T ss_pred CeEEEECCCCCHHHHHHHHCCC-----cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhc
Confidence 5899999999999999984432 33333432 2333332221 1111223322 22224789999987 566544
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccHH---HHHHHHHHHhhccceEEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR---LIESARALTTRLKWDARVIE 436 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~---~~~~~~~~~~~~~w~~~~~~ 436 (458)
. .-....+|-++-|+|+|||.+++..... ..+++.+++....+++....
T Consensus 122 ~----~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 122 A----EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp C----HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence 1 1124578999999999999999954322 36778888888888866543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.88 E-value=8.8e-06 Score=77.80 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccccccccccCCCCCCcccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
.+|||+|||.|.++..|. .... +|+-++.. ..+..+-++.. .-+..|. +.++.-+.+||+|-+.+.+..+
T Consensus 56 ~~vLDiGcG~G~~~~~l~--~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~~~~-- 127 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQ--ERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLPFPSGAFEAVLALGDVLSY-- 127 (260)
T ss_dssp CEEEEETCTTCHHHHHHH--TTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT-TSCCSCTTCEEEEEECSSHHHH--
T ss_pred CeEEEeCCCcCHHHHHHH--HcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHCCCCCCCEEEEEEcchhhhc--
Confidence 589999999999999998 4432 34444443 44444444432 1111122 2233224689999987755544
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEec
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. +...+|-|+-|+|+|||.+++..
T Consensus 128 -~~--~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 128 -VE--NKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp -CS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cc--cHHHHHHHHHHHcCCCeEEEEEe
Confidence 11 26788999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.3e-06 Score=79.10 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=61.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccccccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.++..|.+... +|+-++-. ..+..+-++ ++--...|.. .++ ++.+||+|++..++...
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~- 130 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGA-----EVLGTDNAATMIEKARQNYPHLHFDVADAR-NFR-VDKPLDAVFSNAMLHWV- 130 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSCEEECCTT-TCC-CSSCEEEEEEESCGGGC-
T ss_pred CEEEEecCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChh-hCC-cCCCcCEEEEcchhhhC-
Confidence 5899999999999999984222 33333332 333333333 2211222332 244 37899999998888765
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. +...+|-|+-|+|||||++++.
T Consensus 131 --~---d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 131 --K---EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp --S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred --c---CHHHHHHHHHHhcCCCcEEEEE
Confidence 2 4567899999999999999985
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.3e-06 Score=79.74 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=73.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-cc-ccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g-~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+ +- +..|..+ ++. +.+||+|.+..+|
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~ 194 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY-----DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVF 194 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSG
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccch
Confidence 5799999999999999984432 44444443 33333222 343 11 1223322 233 7899999999988
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEecc--------------HHHHHHHHHHHhhccceEEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------------ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~--------------~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
... ..-.+..+|-++-|+|+|||.+++-.. .-.-++++++... |++....
T Consensus 195 ~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 195 MFL----NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp GGS----CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hhC----CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 765 234566789999999999999776311 1113566777666 8876553
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.87 E-value=3.9e-06 Score=79.54 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=62.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc------ccccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r------gl~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|. .... +|+-++-. ..+..+-++ .+--+..|. +.++.-+.+||+|++..++
T Consensus 41 ~~vLDiG~G~G~~~~~l~--~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLI--ARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CEEEEETCTTSTTHHHHH--TTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCG
T ss_pred CEEEEeCCcCCHHHHHHH--HCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCch
Confidence 689999999999999998 4432 34444433 344443333 111122333 2334224689999998888
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
... . +...++-|+-|+|||||++++.
T Consensus 115 ~~~---~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLV---P---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGC---T---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhc---C---CHHHHHHHHHHHCCCCcEEEEE
Confidence 766 2 4567899999999999999984
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=68.86 Aligned_cols=90 Identities=10% Similarity=-0.056 Sum_probs=64.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC----CeEEEeeccCC---------------
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQ--------------- 101 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~----~~~~~~~d~~~--------------- 101 (458)
.++|||+||| .-+..+++. +..+|+.+|.++...+.|+++ +. ++.+..+++..
T Consensus 31 a~~VLEiGtG--ySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCEEEEECch--HHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 4699999985 566666663 256999999999999998764 43 46677777432
Q ss_pred CC--------C-CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEE
Q 012709 102 LP--------Y-PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 102 Lp--------f-p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~lii 144 (458)
++ . ..++||+|+.-.- .....+..+.+.|+|||.+++
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEE
Confidence 22 1 2368999997642 223567778899999999955
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=75.34 Aligned_cols=94 Identities=21% Similarity=0.185 Sum_probs=63.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|.++..|.+.... +|+-++-. ..+..+-++. +--+..|. +.++.-+.+||+|.+.++|..
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~ 120 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHGAK----KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSLALHY 120 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEchhhhh
Confidence 68999999999999999844321 33444432 3444443332 11122222 234433479999999998876
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+ . +...+|-|+-|+|||||.+++.
T Consensus 121 ~---~---~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 121 I---A---SFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp C---S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred h---h---hHHHHHHHHHHHcCCCcEEEEE
Confidence 6 2 3567899999999999999996
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.5e-05 Score=76.44 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=85.1
Q ss_pred CCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhh----cccccc----ccccccccCCCCCCcccc
Q 012709 302 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGFVG----VLHDWCEAFPTYPRTYDL 373 (458)
Q Consensus 302 ~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~----~rgl~g----~~~~~~~~~~~yp~t~dl 373 (458)
.+|+...+|+|+|||.|.++.+|.+.-..+-+. -.|-+..+..+- +.|+-+ +-+|..+++ |..||+
T Consensus 165 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---p~~~D~ 238 (332)
T 3i53_A 165 YDWAALGHVVDVGGGSGGLLSALLTAHEDLSGT---VLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---PAGAGG 238 (332)
T ss_dssp SCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCSCSE
T ss_pred CCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEE---EecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---CCCCcE
Confidence 356778999999999999999998533332222 222233333222 224321 234444444 448999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------H------------HHHHHHHHHhhccce
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------R------------LIESARALTTRLKWD 431 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------~------------~~~~~~~~~~~~~w~ 431 (458)
+.+.+++..+. +. ....+|-++=|.|+|||+++|-|.. + ..++++++++.-.++
T Consensus 239 v~~~~vlh~~~---~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 314 (332)
T 3i53_A 239 YVLSAVLHDWD---DL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA 314 (332)
T ss_dssp EEEESCGGGSC---HH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE
T ss_pred EEEehhhccCC---HH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCE
Confidence 99999987772 11 2456899999999999999986531 0 135566777777776
Q ss_pred EEEEeeccCCCccEEEEEe
Q 012709 432 ARVIEIESNSDERLLICQK 450 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~k 450 (458)
..-.... ++ ..++.++|
T Consensus 315 ~~~~~~~-~~-~~vie~r~ 331 (332)
T 3i53_A 315 VRAAHPI-SY-VSIVEMTA 331 (332)
T ss_dssp EEEEEEC-SS-SEEEEEEE
T ss_pred EEEEEEC-CC-cEEEEEee
Confidence 5443322 22 56676665
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=77.20 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH---cCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e---r~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
...+|||+|||+|.|+.+++.+. ...++.|+|++..+...+.. .+.++.....++....++.+.+|+|+|-.+ .+
T Consensus 90 ~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmA-pn 167 (282)
T 3gcz_A 90 PTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIG-ES 167 (282)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCC-CC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCc-cC
Confidence 44589999999999999988653 35578899998664222211 022222222222223456788999999754 44
Q ss_pred cccc-----HH--HHHHHHHhcccCC--cEEEEEeCC
Q 012709 121 WDQK-----DG--ILLLEVDRVLKPG--GYFVWTSPL 148 (458)
Q Consensus 121 ~~~~-----~~--~~L~ei~RvLkPG--G~liis~~~ 148 (458)
... .. .+|.-+.++|+|| |.|++-.+.
T Consensus 168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 222 11 3566678999999 999998864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.85 E-value=4.8e-06 Score=80.90 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=62.0
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc----ccc-cc-ccccccccCCCCCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~----rgl-~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
-.+|||+|||.|.++..|.+.-. ..- |+-+|-. ..+..+-+ .|+ +- +..|.. .++ ++.+||+|++..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~ 97 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGSK---YTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHA 97 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCE---EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEECC
Confidence 36899999999999999984311 122 2222222 22222222 121 11 222333 233 378999999999
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
++... . +...+|-|+-|+|||||++++.+..
T Consensus 98 ~l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHM---T---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGC---S---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcC---C---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 88766 2 3468899999999999999986543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-06 Score=80.81 Aligned_cols=95 Identities=25% Similarity=0.288 Sum_probs=62.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccc---cc-cccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---GV-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~---g~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|.+. ... +|+-++-. ..+..+-++ |+- -+ ..|..+ ++.-+.+||+|.+.+
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~-~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATA-RDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWALE 137 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHH-SCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHh-cCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEec
Confidence 58999999999999999742 122 34444433 344433332 432 11 223322 232237999999998
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+|... . +...+|-|+-|+|+|||.+++.+
T Consensus 138 ~l~~~---~---~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHM---P---DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTS---S---CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhC---C---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 88766 2 23678999999999999999864
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-06 Score=79.25 Aligned_cols=116 Identities=13% Similarity=0.183 Sum_probs=75.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc----ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g----~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|||+|||.|.++..|.+... . .|+-++-. ..+..+-+ .|+-. +..|. +.++.-+.+||+|++.+
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~-~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVK-G---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCC-S---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEES
T ss_pred CeEEEeCCCCCHHHHHHHHhCC-C---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecC
Confidence 4899999999999999985422 1 34444433 34444332 34321 23344 33443347999999998
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----------H----------HHHHHHHHHhhccceEEEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------R----------LIESARALTTRLKWDARVI 435 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----------~----------~~~~~~~~~~~~~w~~~~~ 435 (458)
++... +...+|-|+-|+|||||++++.+.. . ..+++.+++..-.++...+
T Consensus 123 ~l~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 123 AIYNI-------GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CSCCC-------CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hHhhc-------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 87643 4678899999999999999997521 1 2355667777777765443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.7e-06 Score=79.25 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=74.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---c-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|. ..+- .+|+-++-. ..+..+-+ .|+- - +..|+ +.++.-+.+||+|.+.+
T Consensus 48 ~~vLDiGcG~G~~~~~la--~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLA--GHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CEEEEETCTTCHHHHHHH--TTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHH--hccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcC
Confidence 689999999999999998 4422 123333332 33443333 2432 1 22333 33443347999999998
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----------H----------HHHHHHHHHhhccceEEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------R----------LIESARALTTRLKWDARV 434 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----------~----------~~~~~~~~~~~~~w~~~~ 434 (458)
++... +...+|-++-|+|||||++++.+.. . ...++.+++..-.++...
T Consensus 123 ~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (267)
T 3kkz_A 123 AIYNI-------GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVA 192 (267)
T ss_dssp CGGGT-------CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEE
T ss_pred Cceec-------CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEE
Confidence 88654 4578899999999999999986421 1 235666777777776543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.1e-06 Score=77.15 Aligned_cols=118 Identities=23% Similarity=0.202 Sum_probs=79.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-ccccccccccccCCCCCCcccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
..|||+|||.|.++..|.+... +|+-++-. ..+..+-++ ++--...|.. .++ .+.+||+|.+.+++...
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~-- 115 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF-----DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHV-- 115 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGS--
T ss_pred CcEEEECCCCCHHHHHHHHcCC-----eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhc--
Confidence 5899999999999999984422 34444443 445544444 3322233332 234 46899999999888765
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEeccH---------------HHHHHHHHHHhhcc-ceEEEEe
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------------RLIESARALTTRLK-WDARVIE 436 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~d~~---------------~~~~~~~~~~~~~~-w~~~~~~ 436 (458)
. .-....+|-|+-|+|+|||++++.... ...++++++++.-. ++.....
T Consensus 116 -~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 116 -P-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp -C-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred -C-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 1 224567899999999999999985211 13578888888888 8755443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-05 Score=68.44 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=73.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||.|.++..|.+.-... .|+-++-. ..+..+-+ .|+- -+..|..+.++..+.+||+|.++..
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQT---TAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSSE---EEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CeEEEeCCCCCHHHHHHHHHCCCC---eEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc
Confidence 689999999999999988331122 33333432 33444332 2432 2234444566655578999996665
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARV 434 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~ 434 (458)
+.. ..++-++-|+|+|||.+++.+. .+-...+..+.+...+++.-
T Consensus 104 ~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 104 LTA----------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp TTC----------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEE
T ss_pred ccH----------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEE
Confidence 542 4579999999999999999654 34556667777776666443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=77.15 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=60.2
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCcccccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
-.+|||+|||.|.++..|. +... +|+-+|-. ..+..+-++.-+-.++.=.+.++.-+.+||+||+.+++..+
T Consensus 35 ~~~vLDiGcG~G~~~~~l~--~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-- 107 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALA--NQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF-- 107 (261)
T ss_dssp TCEEEEETCTTSHHHHHHH--TTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGC--
T ss_pred CCEEEEEcCcccHHHHHHH--hCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhc--
Confidence 3689999999999999999 4332 23333322 22222222221112222223344334799999999988765
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEe
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-+...+|-|+-|+|| ||++++.
T Consensus 108 ----~~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 108 ----SHLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp ----SSHHHHHHHHHHHBC-SSCEEEE
T ss_pred ----cCHHHHHHHHHHHhC-CcEEEEE
Confidence 245688999999999 9988774
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-05 Score=76.83 Aligned_cols=138 Identities=12% Similarity=0.189 Sum_probs=84.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--c-cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--V-GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~-g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||.|.++.+|...-... +|+-++-. ..+.++-++ |+ + =+..|+.++++ +.+||+|-++--
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 479999999999999987331121 34444443 444443332 32 2 22346666554 468999998743
Q ss_pred cccccc---------CCCC----------CCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccC
Q 012709 380 LSLESG---------HRHR----------CSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 440 (458)
Q Consensus 380 ~~~~~~---------~~~~----------c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~ 440 (458)
+..... .... -.+..++-++-|+|+|||++++.......++++++++...|+......+-.
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~ 265 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYG 265 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCC
Confidence 321100 0000 123467788999999999999976666667788888777776332222344
Q ss_pred CCccEEEEEe
Q 012709 441 SDERLLICQK 450 (458)
Q Consensus 441 ~~~~~~~~~k 450 (458)
+.+++++++|
T Consensus 266 g~~r~~~~~~ 275 (276)
T 2b3t_A 266 DNERVTLGRY 275 (276)
T ss_dssp SSEEEEEEEC
T ss_pred CCCcEEEEEE
Confidence 5588888875
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.5e-05 Score=70.33 Aligned_cols=138 Identities=17% Similarity=0.115 Sum_probs=74.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCC-CCcccccccc-c
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTY-PRTYDLVHAE-G 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~y-p~t~dl~h~~-~ 378 (458)
..|||+|||.|.++..|. .... .|+-+|-. ..+..+-+ .|+ +-+.++-.+.++.+ +.+||+|.++ +
T Consensus 24 ~~vLDiGcG~G~~~~~la--~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLA--GLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CEEEESCCTTSHHHHHHH--TTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CEEEEEcCCCCHHHHHHH--HhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 579999999999999998 4422 34444433 33443322 344 33344434443222 5689999654 2
Q ss_pred cccccccC--CCCCCcchhhhhhcccccCCceEEEecc------HHHHHHHHHHHhhcc---ceEEEEeeccC--CCccE
Q 012709 379 LLSLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLK---WDARVIEIESN--SDERL 445 (458)
Q Consensus 379 ~~~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~~d~------~~~~~~~~~~~~~~~---w~~~~~~~~~~--~~~~~ 445 (458)
.+..-... ...-.....|-|+-|+|||||.+++-.- .+..+.+.+.+..+. |.+.....-.. ....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL 178 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEE
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeE
Confidence 22210000 0001123567899999999999998422 233455666666655 66555443322 22445
Q ss_pred EEEEe
Q 012709 446 LICQK 450 (458)
Q Consensus 446 ~~~~k 450 (458)
++..|
T Consensus 179 ~~i~~ 183 (185)
T 3mti_A 179 VMLEK 183 (185)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-05 Score=76.12 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=76.3
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----c-----------------------------
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G----------------------------- 352 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----g----------------------------- 352 (458)
-.+|||+|||.|.++..|. .... -+|+-++-. ..+..+-++ +
T Consensus 57 ~~~vLDlGcG~G~~~~~l~--~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSA--CESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp EEEEEEESCTTCCGGGTTG--GGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHh--hccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4789999999999998887 3332 244444443 333333211 1
Q ss_pred --cc--cccccccccCCCCC---CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------
Q 012709 353 --FV--GVLHDWCEAFPTYP---RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---------- 415 (458)
Q Consensus 353 --l~--g~~~~~~~~~~~yp---~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~---------- 415 (458)
-+ -+-.|..+.-+.-+ .+||+|.+..++.... .+.-....+|-++-|+|||||++++.+..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 210 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC--PDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQ 210 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc--CChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCc
Confidence 02 11223333222123 6899999998887441 11123557899999999999999986521
Q ss_pred ------HHHHHHHHHHhhccceEEEEee
Q 012709 416 ------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 416 ------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
-..+.+.+++..-.+++.....
T Consensus 211 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 211 KFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp EEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 0235788888888887655443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.2e-05 Score=83.19 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC--ccceEEEEcCCHHHHHHH--HHc--------CCC-eEEEeeccCCC-CCCCCCe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLT--LER--------GLP-AMIGSFASKQL-PYPSLSF 109 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~--~~~~v~gvD~S~~~i~~A--~er--------~~~-~~~~~~d~~~L-pfp~~sF 109 (458)
...+|||.|||+|.+...++.+.. ...+++|+|+++.+++.| +.+ +.. ..+...+.... +.+.+.|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 356999999999999999887531 245799999999999998 332 222 23443444332 2345789
Q ss_pred eEEEecccccc-ccc--------------------------c-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVD-WDQ--------------------------K-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~-~~~--------------------------~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|+++--... ... + ...++..+.+.|+|||++++..|
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999855422 110 0 12467889999999999999987
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.9e-06 Score=75.45 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=79.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccccc---ccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g---~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
.+|||+|||.|.++..|.+... +|+-++-. ..+..+-++|+-. +..|..+.+ -+.+||+|.+..++..+
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD-----RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWT--PDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCC--CSSCEEEEEEESCGGGS
T ss_pred CeEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCC--CCCceeEEEEechhhcC
Confidence 4899999999999999985433 33444433 4555555555311 122333322 24799999999988876
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH----------------------------------HHHHHHHHHHhhcc
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------------------RLIESARALTTRLK 429 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------------------------~~~~~~~~~~~~~~ 429 (458)
. .-.+..+|-|+-|+|+|||.+++.+.. ...++++++++.-.
T Consensus 121 ---~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 196 (218)
T 3ou2_A 121 ---P-DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALG 196 (218)
T ss_dssp ---C-HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTT
T ss_pred ---C-HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCC
Confidence 2 122567899999999999999986431 12367778888888
Q ss_pred ceEEEEee
Q 012709 430 WDARVIEI 437 (458)
Q Consensus 430 w~~~~~~~ 437 (458)
+++...+.
T Consensus 197 f~v~~~~~ 204 (218)
T 3ou2_A 197 WSCSVDEV 204 (218)
T ss_dssp EEEEEEEE
T ss_pred CEEEeeec
Confidence 88666553
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.81 E-value=1e-05 Score=74.20 Aligned_cols=127 Identities=10% Similarity=0.129 Sum_probs=75.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||.|.++.+|...-... +|+-++.. ..+..+-+ .|+ +-++ .|+.+ ++ -+.+||+|.+.++
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~ 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc
Confidence 479999999999999887431111 33333432 33333222 243 2222 23333 22 1368999986432
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEE---eecc-CCCccEEEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI---EIES-NSDERLLICQKP 451 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~---~~~~-~~~~~~~~~~k~ 451 (458)
.....++-++-|+|+|||++++......-++++.+.+ .|+.... ...+ ++...++++.|.
T Consensus 142 ----------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ----------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ----------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ----------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 2345789999999999999999865555567777766 6765431 1222 334677777764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=71.26 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=73.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---c-cccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---V-GVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~-g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|+|+|||.|.++..|. ..- -+|+-++.. ..+..+-+ .|+ + -.-.|+.+.++.. .+||+|-+++
T Consensus 35 ~~vldiG~G~G~~~~~l~--~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~ 108 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELA--GRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGG 108 (192)
T ss_dssp CEEEEESCTTSHHHHHHH--TTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHH--Hhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECC
Confidence 689999999999999998 433 234444432 33333322 232 1 1223444433321 3799998766
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccceEEEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
.+.. +..++-++-|+|+|||.+++.+ ......++.++++...|++...
T Consensus 109 ~~~~---------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 109 SGGE---------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp CTTC---------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred chHH---------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 5432 3578999999999999999864 4566778888888777765544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.2e-06 Score=76.42 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=76.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc---cc-ccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VG-VLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g-~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|.++.+|.+.+. +|+-++-. ..+..+-+++. +- +..|.. .++.-+.+||+|.+.++|..
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY-----KAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCSSCTTCEEEEEEESCTTS
T ss_pred CeEEEEcCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhcccCCceEEEcchh-cCCCCCCCccEEEEcChHhh
Confidence 5899999999999999995433 34444433 45555555531 11 122222 23333579999999888876
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEeccH----------------------HHHHHHHHHHhhccceEEEE
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------------RLIESARALTTRLKWDARVI 435 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------------~~~~~~~~~~~~~~w~~~~~ 435 (458)
. . ....+|-|+-|+|+|||++++.+.. ....++++++..-.+++...
T Consensus 129 ~---~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 129 T---E---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp S---S---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred c---c---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 5 2 3457899999999999999996410 11256788888888875544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.2e-05 Score=70.44 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=68.9
Q ss_pred eEEeeccccchhhhhhhhccCC----CeEEEEeecCCCCCCchhhhccccccccccccccCC------------------
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK----SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFP------------------ 365 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~----~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~------------------ 365 (458)
.+|||+|||.|+++.+|.++-. .|.-+-+.|.... .++.-+-.|..+. +
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~--------~~v~~~~~d~~~~-~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPI--------PNVYFIQGEIGKD-NMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCC--------TTCEEEECCTTTT-SSCCC-----------CHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCC--------CCceEEEccccch-hhhhhccccccccccchhh
Confidence 5799999999999999974322 2444333332110 1111111222221 1
Q ss_pred ------CCC-Ccccccccccccccccc--CCC-C--CCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceE
Q 012709 366 ------TYP-RTYDLVHAEGLLSLESG--HRH-R--CSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDA 432 (458)
Q Consensus 366 ------~yp-~t~dl~h~~~~~~~~~~--~~~-~--c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~ 432 (458)
.++ .+||+|-++..+..... ... + -....++-++-|+|+|||.+++.... +....+...+...-.++
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~v 174 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLV 174 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHheE
Confidence 022 58999997765432100 000 0 00123678899999999999984211 11334444444432234
Q ss_pred EEEeecc---CCCccEEEEEe
Q 012709 433 RVIEIES---NSDERLLICQK 450 (458)
Q Consensus 433 ~~~~~~~---~~~~~~~~~~k 450 (458)
...+... .+.|..+||++
T Consensus 175 ~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 175 HTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EECCCC-----CCEEEEEEEE
T ss_pred EEECCcccCCcCceEEEEEec
Confidence 4433221 23488999976
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.8e-05 Score=73.96 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=80.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccc----ccccccc-ccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFV----GVLHDWC-EAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~----g~~~~~~-~~~~~yp~t~dl~h~~~~ 379 (458)
++|||+|||+|+|+..|++. .. -.|+-+|-. +.|.....+ .++ .-+.... +.++. .+||++-++-.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~--ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~--~~fD~v~~d~s 160 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQN--GA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE--GLPSFASIDVS 160 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTT--CCCSEEEECCS
T ss_pred cEEEecCCCccHHHHHHHhC--CC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCC--CCCCEEEEEee
Confidence 68999999999999988743 21 134444543 666653321 111 0111111 22331 35999988776
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe---------cc-------------HHHHHHHHHHHhhccceEEEEee
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---------DT-------------ARLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~---------d~-------------~~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
|.. +..+|=|+-|+|+|||.+++- +. ...++++.+.+....|.+.....
T Consensus 161 f~s---------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 161 FIS---------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDF 231 (291)
T ss_dssp SSC---------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred Hhh---------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 653 356899999999999999873 11 13578888999999999776654
Q ss_pred cc--CC---CccEEEEEe
Q 012709 438 ES--NS---DERLLICQK 450 (458)
Q Consensus 438 ~~--~~---~~~~~~~~k 450 (458)
.. |+ .|=++.++|
T Consensus 232 spi~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 232 SPIQGGHGNIEFLAHLEK 249 (291)
T ss_dssp CSSCCGGGCCCEEEEEEE
T ss_pred CCCCCCCcCHHHHHHhhh
Confidence 32 22 254555555
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.80 E-value=4e-06 Score=81.13 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=63.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cccc-ccccccCC-CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFP-TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~-~~~~~~~~-~yp~t~dl~h~~ 377 (458)
..|||+|||.|.++..|.+. .. .|+-++-. ..+..+-++ |+ +-++ .|.. .++ ..+.+||+|.+.
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~--~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~ 143 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAER--GH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ-DVASHLETPVDLILFH 143 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHT--TC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG-GTGGGCSSCEEEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHC--CC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH-HhhhhcCCCceEEEEC
Confidence 57999999999999999844 32 33444433 444443332 43 1122 2332 233 335799999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+++... . +...+|-|+-|+|||||++++.+
T Consensus 144 ~~l~~~---~---~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 144 AVLEWV---A---DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp SCGGGC---S---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhhcc---c---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 998876 2 34678999999999999999864
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=75.00 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcC------Cc-----cceEEEEcCCH---HHHHH-----------HHHc----------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE------LL-----TMCIANYEASG---SQVQL-----------TLER---------- 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~------~~-----~~~v~gvD~S~---~~i~~-----------A~er---------- 88 (458)
...+|||||+|+|..+..+++.. .+ ..+++++|..+ ++++. |++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 34689999999998887765431 23 35899999776 44442 3321
Q ss_pred ---------CCCeEEEeeccCC-CCCC-C---CCeeEEEecccccccc-cc--HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 89 ---------GLPAMIGSFASKQ-LPYP-S---LSFDMLHCARCGVDWD-QK--DGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 89 ---------~~~~~~~~~d~~~-Lpfp-~---~sFD~I~~~~~l~~~~-~~--~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
..++.+..+|+.. ++.. + ..||+|+.-. +..-. .+ ...+|.++.++|||||.|+....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 0234566677554 3422 2 2799999742 22111 01 24699999999999999986332
Q ss_pred ccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 152 QAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 152 ~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
. ..++..+...+|.+..
T Consensus 215 -----a-------~~vrr~L~~aGF~v~~ 231 (257)
T 2qy6_A 215 -----A-------GFVRRGLQEAGFTMQK 231 (257)
T ss_dssp -----B-------HHHHHHHHHHTEEEEE
T ss_pred -----C-------HHHHHHHHHCCCEEEe
Confidence 0 1345556667888664
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.3e-05 Score=76.51 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=80.6
Q ss_pred CCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch--hhhcccccc----ccccccccCCCCCCcccccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP--MILDRGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~--~~~~rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
|....+|+|+|||.|.++.+|.++-..+-+. -.|-+..+. .+-+.|+-+ +-+|..++ .| +||++.+.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~p-~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGV---LLDRAEVVARHRLDAPDVAGRWKVVEGDFLRE---VP-HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEE---EEECHHHHTTCCCCCGGGTTSEEEEECCTTTC---CC-CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEE---EecCHHHhhcccccccCCCCCeEEEecCCCCC---CC-CCcEEEEe
Confidence 5567999999999999999998543333222 222111000 011123321 23444444 45 89999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-------------------------HHHHHHHHHHhhccceE
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------------------RLIESARALTTRLKWDA 432 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-------------------------~~~~~~~~~~~~~~w~~ 432 (458)
+++..+. + -....+|-|+-|+|||||.++|.|.. ...++++++++.-.++.
T Consensus 255 ~vlh~~~---d-~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 330 (348)
T 3lst_A 255 RILHNWG---D-EDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRL 330 (348)
T ss_dssp SCGGGSC---H-HHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEE
T ss_pred hhccCCC---H-HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCce
Confidence 9887762 1 12247899999999999999985421 01356667777777775
Q ss_pred EEEeeccCCCccEEEEEe
Q 012709 433 RVIEIESNSDERLLICQK 450 (458)
Q Consensus 433 ~~~~~~~~~~~~~~~~~k 450 (458)
.-... .++...++.++|
T Consensus 331 ~~~~~-~~~~~~vie~~p 347 (348)
T 3lst_A 331 DRVVG-TSSVMSIAVGVP 347 (348)
T ss_dssp EEEEE-CSSSCEEEEEEE
T ss_pred EEEEE-CCCCcEEEEEEe
Confidence 44433 333345555543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=71.62 Aligned_cols=92 Identities=22% Similarity=0.180 Sum_probs=60.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccccccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.++..|- .. +|+-++-. ..+..+-++ ++--+..|. +.++.-+.+||+|.+.+++...
T Consensus 38 ~~vLdiG~G~G~~~~~l~--~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~- 108 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRLP--YP-----QKVGVEPSEAMLAVGRRRAPEATWVRAWG-EALPFPGESFDVVLLFTTLEFV- 108 (211)
T ss_dssp SEEEEETCTTCHHHHHCC--CS-----EEEEECCCHHHHHHHHHHCTTSEEECCCT-TSCCSCSSCEEEEEEESCTTTC-
T ss_pred CeEEEECCCCCHhHHhCC--CC-----eEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccCCCCCCcEEEEEEcChhhhc-
Confidence 589999999999998882 21 23333433 334444333 221112222 2233324699999999888766
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
. +...+|-|+-|+|+|||.+++.+
T Consensus 109 --~---~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 109 --E---DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp --S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --C---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 46788999999999999999863
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00052 Score=69.70 Aligned_cols=121 Identities=10% Similarity=0.070 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.++.+|||+||++|.++..|++++. .|+++|..+ |-.... ....+.+...|......+.+.||+|+|--+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~---~V~aVD~~~-l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~----- 279 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNM---WVYSVDNGP-MAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMV----- 279 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC---EEEEECSSC-CCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCS-----
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCC---EEEEEEhhh-cChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCC-----
Confidence 4567999999999999999999864 899999864 222222 235788888888887777788999998632
Q ss_pred ccHHHHHHHHHhcccCC---cEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccE
Q 012709 123 QKDGILLLEVDRVLKPG---GYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPG---G~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~ 177 (458)
..+...+.-+.+.|..| +.++........ +-.+..+....+.......++.
T Consensus 280 ~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~----~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 280 EKPAKVAALMAQWLVNGWCRETIFNLKLPMKK----RYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEEEECCSSS----HHHHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHhHHHHHHHHhccccceEEEEEEecccc----hHHHHHHHHHHHHHHHHhcCcc
Confidence 24455566666666555 444333332211 1122333355666666655554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-06 Score=80.08 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=64.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc-----cccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg-----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|||+|||.|.++..|.++- .. +|+-++-. ..+..+-++. +--+..|..+ ++.-+.+||+|++.+++.
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~-~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKY-GA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHH-CC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCGG
T ss_pred CEEEEECCCCCHHHHHHHHHc-CC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHHH
Confidence 589999999999999998431 21 34444433 4444444432 1112334433 233357999999988887
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+. .-....+|-|+-|+|||||.+++.+
T Consensus 132 ~~~----~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 132 ALS----LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcC----hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 651 2345678999999999999999964
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.77 E-value=5.1e-05 Score=69.54 Aligned_cols=116 Identities=17% Similarity=0.078 Sum_probs=74.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--cc-ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|....... +|+-+|-. ..+..+-++ |+ +- +..|..+.++. ..+||+|-++..
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 117 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPNG---RIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD-LPDPDRVFIGGS 117 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTS---EEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT-SCCCSEEEESCC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc-CCCCCEEEECCC
Confidence 589999999999999998543111 23333332 334433332 33 11 22333343332 256999876554
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+. .+..++-++-|+|||||.+++.. ..+..+++.++++...|++.+..
T Consensus 118 ~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 166 (204)
T 3e05_A 118 GG---------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEVAC 166 (204)
T ss_dssp TT---------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEEEE
T ss_pred Cc---------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeEEE
Confidence 32 45578999999999999999974 44667888888888888655543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.5e-05 Score=73.20 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=78.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cccc----ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g----~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|. .... +|+-++-. ..+..+-++ |+.. +..|..+ ++ .+.+||+|.+..
T Consensus 68 ~~vLDiGcG~G~~~~~l~--~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~ 140 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMA--SPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYV 140 (235)
T ss_dssp EEEEEETCTTCHHHHHHC--BTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEES
T ss_pred CCEEEeCCCCCHHHHHHH--hCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEECh
Confidence 489999999999999998 4332 34444433 334333322 2211 2233333 22 245899999988
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----------HHHHHHHHHHhhccceEEEEee
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
+|..+. .-....+|-++-|+|+|||++++.+.. -..+++++++..-.|+....+.
T Consensus 141 ~l~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 141 FFCAIE----PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp STTTSC----GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred hhhcCC----HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 887651 335667899999999999999984221 1257888999998998765543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=77.40 Aligned_cols=90 Identities=16% Similarity=0.007 Sum_probs=61.3
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------C---CCeEEEeeccCC-CCCCCCCee
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------G---LPAMIGSFASKQ-LPYPSLSFD 110 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------~---~~~~~~~~d~~~-Lpfp~~sFD 110 (458)
.+|||+|||+|..+..+++++. +|+++|.++.+.+.+++. + .++.+..+|... ++...++||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 6899999999999999999864 799999999764443322 1 247788888665 342224799
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCc
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGG 140 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG 140 (458)
+|++.-.+ +... ...++++..++|++.+
T Consensus 167 vV~lDP~y-~~~~-~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPMF-PHKQ-KSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCCC-CCCC-C-----HHHHHHHHHS
T ss_pred EEEEcCCC-CCcc-cchHHHHHHHHHHHhh
Confidence 99998654 3332 2356777778887765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=7.1e-06 Score=80.77 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=61.4
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhc----cccc---cc-cccccccCCCCCCccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFV---GV-LHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~-~~~~~~~~~~yp~t~dl~h~ 376 (458)
-.+|||+|||.|.++..|.++ ... |+-++-. ..+..+-+ .|+- -. ..|.. .++.-+.+||+|.+
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~~-----v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGSR-----VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTPFDKGAVTASWN 191 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCE-----EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHcCCE-----EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCCCCCCCEeEEEE
Confidence 368999999999999999843 323 3333332 33433332 3432 11 22222 23321379999999
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..++... +...+|-|+-|+|||||.+++.
T Consensus 192 ~~~l~~~-------~~~~~l~~~~~~LkpgG~l~~~ 220 (312)
T 3vc1_A 192 NESTMYV-------DLHDLFSEHSRFLKVGGRYVTI 220 (312)
T ss_dssp ESCGGGS-------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCchhhC-------CHHHHHHHHHHHcCCCcEEEEE
Confidence 8887755 2788999999999999999984
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=69.07 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=76.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-cc-----cccccc-ccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWC-EAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g-----~~~~~~-~~~~~yp~t~dl~h~~~~ 379 (458)
++|||+|||+|+|+..|.+. ..- .|+-+|-. +.|.....+.- ++ -+...+ +.++. .-+|.+-.+-+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~--g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQN--GAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CEEEEEccCCCHHHHHHHhc--CCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 58999999999999999843 321 34445543 56665443221 11 111112 23332 01343333333
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe-------------------ccH---HHHHHHHHHHhhccceEEEEee
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-------------------DTA---RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~-------------------d~~---~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
|+. +..+|-|+-|+|||||.+++- |.. ..++++.+++....|++...+.
T Consensus 113 ~~~---------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 113 FIS---------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp SSC---------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhh---------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEE
Confidence 332 366899999999999999873 111 2456788888888998776654
Q ss_pred cc-----CCCccEEEEEec
Q 012709 438 ES-----NSDERLLICQKP 451 (458)
Q Consensus 438 ~~-----~~~~~~~~~~k~ 451 (458)
.. +.-|-++.++|+
T Consensus 184 ~pi~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 184 SPIKGGAGNVEFLVHLLKD 202 (232)
T ss_dssp CSSCBTTTBCCEEEEEEES
T ss_pred ccCCCCCCCHHHHHHHhhc
Confidence 42 223667777763
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=9e-06 Score=77.17 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=61.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-cc-ccccc---cccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VG-VLHDW---CEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g-~~~~~---~~~~~~yp~t~dl~h~~ 377 (458)
..|||+|||.|.++.+|. +... -+|+-++-+ ..+..+-++ |+ +- +..|| ...++. .+||.|..+
T Consensus 62 ~rVLdiG~G~G~~~~~~~--~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D 135 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQ--EAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCTTSHHHHHHT--TSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred CeEEEECCCccHHHHHHH--HhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEe
Confidence 579999999999999998 4432 134444443 445544332 22 11 22334 344543 689999766
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-+.+.... ++.-....++=|+-|+|||||.|++-
T Consensus 136 ~~~~~~~~-~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 136 TYPLSEET-WHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCCBGGG-TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eeecccch-hhhcchhhhhhhhhheeCCCCEEEEE
Confidence 65554411 22223457888999999999999974
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=79.91 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=63.9
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc----cccc----cccccccccCCCCCCcccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~----rgl~----g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
..+.|+|+|||.|.++.+|.++...+ .++-.|-+..+..+-+ .|+- =+-+|..+.-.++|.+||++.+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 46899999999999999998532332 2232332333333322 2431 12234333211356899999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.++..+. + -....+|=++-|.|+|||.++|.|
T Consensus 256 ~vlh~~~---~-~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFS---E-EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSC---H-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCC---H-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9887662 1 123467889999999999999853
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.7e-05 Score=69.86 Aligned_cols=139 Identities=9% Similarity=-0.001 Sum_probs=81.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cccc-ccccccCC-CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFP-TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~-~~~~~~~~-~yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++..|...-.+-- +|+-+|-. ..+..+-++ |+ +-++ .|. +.++ ..+.+||+|-++
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEEc
Confidence 4899999999999999874311111 34444443 444443332 33 2222 222 2233 345789999877
Q ss_pred ccccccccCCCCC------CcchhhhhhcccccCCceEEEec------cHHHHHHHHHHHhhcc---ceEEEEeeccCC-
Q 012709 378 GLLSLESGHRHRC------STLDIFTEIDRILRPEGWVIIRD------TARLIESARALTTRLK---WDARVIEIESNS- 441 (458)
Q Consensus 378 ~~~~~~~~~~~~c------~~~~~~~e~drilrp~g~~~~~d------~~~~~~~~~~~~~~~~---w~~~~~~~~~~~- 441 (458)
..+-.. .+.. ....++-++-|+|||||.+++.. .....+.+...++.+. |++.....-+..
T Consensus 101 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~ 177 (197)
T 3eey_A 101 LGYLPS---GDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQAN 177 (197)
T ss_dssp ESBCTT---SCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCS
T ss_pred CCcccC---cccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCcc
Confidence 655111 1111 12358999999999999999863 2234556666666655 887766654432
Q ss_pred -CccEEEEEecc
Q 012709 442 -DERLLICQKPF 452 (458)
Q Consensus 442 -~~~~~~~~k~~ 452 (458)
...++|.+|.+
T Consensus 178 ~pp~~~~~~~~~ 189 (197)
T 3eey_A 178 CPPILVCIEKIS 189 (197)
T ss_dssp CCCEEEEEEECC
T ss_pred CCCeEEEEEEcc
Confidence 35677777653
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.73 E-value=7e-05 Score=66.41 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=56.9
Q ss_pred CCEEEEECCCCc-hhHHHHhh-cCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCC--CCeeEEEecccccc
Q 012709 45 VRTILDIGCGYG-SFGAHLFS-KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS--LSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G-~~~~~La~-~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~--~sFD~I~~~~~l~~ 120 (458)
..+|||||||.| ..+.+|++ .++ .|+++|+++..++ +...|..+ |..+ +.||+|++.+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~----------~v~dDiF~-P~~~~Y~~~DLIYsirP--- 98 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG----------IVRDDITS-PRMEIYRGAALIYSIRP--- 98 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT----------EECCCSSS-CCHHHHTTEEEEEEESC---
T ss_pred CCcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc----------eEEccCCC-CcccccCCcCEEEEcCC---
Confidence 469999999999 69999997 665 8999999987665 66666655 3332 47999998764
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+....+.++.+-. |.-+++..
T Consensus 99 -P~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 99 -PAEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp -CTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred -CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 333344555555433 45566654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=73.16 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=61.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----c--cccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G--FVGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----g--l~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|.+... +|+-++-. ..+..+-++ | +--+..|..+ ++.-+.+||+|.++.++
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCG
T ss_pred CeEEEEeccCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCch
Confidence 5899999999999999984433 44444433 333333222 1 1112233333 23223689999988874
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
...+ .-+...+|-++-|+|+|||.+++.+.
T Consensus 114 ~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 114 VHFE----PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GGCC----HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4331 12345789999999999999998754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=74.04 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=61.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|.++..|.+.... +|+-++-. ..+..+-++. +--+..|..+ ++.-+.+||+|.+..++..
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHGAS----YVLGLDLSEKMLARARAAGPDTGITYERADLDK-LHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGG-CCCCTTCEEEEEEESCGGG
T ss_pred CEEEEEcCcCCHHHHHHHHCCCC----eEEEEcCCHHHHHHHHHhcccCCceEEEcChhh-ccCCCCCceEEEEeccccc
Confidence 68999999999999999843220 22223322 3333333332 2112223322 3433479999999888876
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
. . ....+|-++-|+|||||.+++..
T Consensus 120 ~---~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 V---E---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp C---S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---c---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 5 2 45688999999999999999864
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.1e-05 Score=78.72 Aligned_cols=98 Identities=11% Similarity=0.189 Sum_probs=59.0
Q ss_pred eEEeeccccchhhhhh----hhccCCCeEEEEeecCCCC-CCchhhhcc-----cccccccccc----ccCC------CC
Q 012709 308 RNVLDMNAHFGGFNSA----LLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWC----EAFP------TY 367 (458)
Q Consensus 308 r~~~d~~~~~g~faa~----l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-----gl~g~~~~~~----~~~~------~y 367 (458)
..|||+|||.|.++.. |..+...+- ..++-++.+ .-|..+-+| |+-.+--.|. +.++ .-
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 4799999999987643 332112332 223444433 444443332 3311111111 1121 11
Q ss_pred CCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 368 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+.+||+|++..++-.+ . +....|-||-|+|||||++++.
T Consensus 133 ~~~fD~V~~~~~l~~~---~---d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYV---K---DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCEEEEEEESCGGGC---S---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeec---C---CHHHHHHHHHHHcCCCcEEEEE
Confidence 4789999999998877 2 3567899999999999999984
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.4e-05 Score=72.40 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=62.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-------ccc-cccccccCCCCCCccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-------VGV-LHDWCEAFPTYPRTYDLV 374 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-------~g~-~~~~~~~~~~yp~t~dl~ 374 (458)
.+|||+|||.|.++.+|.++.... +|+-+|-. ..+..+-++ |+ +-+ -.|. +..+.-+.+||+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 106 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFFE---QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAA 106 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTCS---EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCCC---EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEE
Confidence 689999999999999998432212 33333332 334433332 22 111 1122 1122223689999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+..+|..+. .-.+..+|-++-|+|+|||.+++.++.
T Consensus 107 ~~~~~l~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 107 TVIEVIEHLD----LSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEESCGGGCC----HHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred eeHHHHHcCC----HHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 9999888662 223467889999999999999886554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.6e-05 Score=77.56 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=59.6
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-----cccc---c-cccccccCCCCC------Cc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVG---V-LHDWCEAFPTYP------RT 370 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-----gl~g---~-~~~~~~~~~~yp------~t 370 (458)
-.+|||+|||.|.++..|.+.-.+. -+|+-+|-. ..+..+-++ |... . ..|. +.++.-. .+
T Consensus 37 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 37 RKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS-DDFKFLGADSVDKQK 113 (299)
T ss_dssp CSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-TCCGGGCTTTTTSSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-HhCCccccccccCCC
Confidence 3789999999999999998310111 133344433 444444333 2211 1 1222 2222112 68
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
||+|++..++... +...+|-|+-|+|||||++++
T Consensus 114 fD~V~~~~~l~~~-------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 114 IDMITAVECAHWF-------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEEESCGGGS-------CHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEeHhhHHHHh-------CHHHHHHHHHHhcCCCcEEEE
Confidence 9999988776532 667899999999999999998
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.9e-05 Score=73.43 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=61.4
Q ss_pred eEEeeccccchhhhhhhhcc--CCCeEEEEeecCCCC-CCchhhhccc--cccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~--~~~~~~m~v~~~~~~-~~l~~~~~rg--l~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|.++..|.+. ...|..+ +-. ..+..+-++. +--+..|. +.++ -+.+||+|++..++..
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~~v~~~-----D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVNVITGI-----DSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTTSEEEE-----ESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEE-----ECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence 57999999999999999844 2233332 322 3344443331 11112222 2344 3579999999888876
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
. . +...+|-|+-|+|+|||++++..
T Consensus 108 ~---~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 V---P---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp S---T---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred C---C---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 5 2 35678999999999999999963
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=73.00 Aligned_cols=109 Identities=8% Similarity=0.067 Sum_probs=69.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc--cccccccccccCCCC-CCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg--l~g~~~~~~~~~~~y-p~t~dl~h~~~~~~~~ 383 (458)
..|||+|||.|.++..|.+... .|+-+|-. ..+..+-++. +-=+..|+.+.++.- +.+||+|.++
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA-----RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 5799999999999999994422 44444443 4455554441 222334555555532 4799999854
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
-....+|-|+-|+|||||.++.-........+.+.+..-.++..
T Consensus 119 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 119 ------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp ------SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred ------CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 13456789999999999999943222234556666666555543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-05 Score=73.53 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=75.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
.+|||+|||.|.++..|. .. +-++.. ..+..+-++++--+..|. +.++.-+.+||+|.+.+++...
T Consensus 49 ~~vLDiG~G~G~~~~~l~--~~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~--- 115 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLK--IK-------IGVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFV--- 115 (219)
T ss_dssp SCEEEETCTTSTTHHHHT--CC-------EEEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGS---
T ss_pred CcEEEeCCCCCHHHHHHH--HH-------hccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhc---
Confidence 589999999999999998 54 222222 444445455432222222 2233324689999999888765
Q ss_pred CCCCCcchhhhhhcccccCCceEEEeccH------------------------HHHHHHHHHHhhccceEEEEe
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIRDTA------------------------RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~d~~------------------------~~~~~~~~~~~~~~w~~~~~~ 436 (458)
. +...+|-++-|+|+|||++++.+.. -..+++++++....++.....
T Consensus 116 ~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 116 D---DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred c---CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 2 3467899999999999999985211 124677888888888755443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=70.41 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH---cCCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e---r~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+..+|||+||++|.|+.+++++. ....+.|+|+...+...... .+.++.....+.....++.+.+|+|+|..+ .
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~A-P 157 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIG-E 157 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-C
T ss_pred CCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCc-C
Confidence 356799999999999999999853 34578899997543111000 011222222222223455678999999643 4
Q ss_pred cccccH-------HHHHHHHHhcccCC-cEEEEEeCC
Q 012709 120 DWDQKD-------GILLLEVDRVLKPG-GYFVWTSPL 148 (458)
Q Consensus 120 ~~~~~~-------~~~L~ei~RvLkPG-G~liis~~~ 148 (458)
+ .... ..+|.-+.++|+|| |.|++-.+.
T Consensus 158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4 3221 13566678999999 999998764
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=71.34 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=73.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc---ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|+|+.++...... .|+-+|.. ..+..+-+ .|+-. .++.=.+.+.. +.+||+|.++..
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~----~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA----KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC----EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CEEEEecccCCHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 58999999999999888744433 23333432 33333222 24422 22211222333 578999975433
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccH-------HHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-------~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+ ....++-++-|+|+|||.+++.+.. +.++++.+.+....|++....
T Consensus 202 ~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~ 255 (278)
T 2frn_A 202 V----------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp S----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred h----------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEee
Confidence 2 2345788899999999999995433 567888999999999988743
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.8e-05 Score=74.65 Aligned_cols=129 Identities=16% Similarity=0.321 Sum_probs=74.7
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---ccc-cccccccCC-CCCCccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGV-LHDWCEAFP-TYPRTYDLVHA 376 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~-~~~~~~~~~-~yp~t~dl~h~ 376 (458)
-++|||+|||.|.++.+|.+.... -.|+-++-. ..+..+-+ .|+ |-+ ..|..+.++ ..+.+||+|.+
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDD---IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTT---CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 368999999999999999841122 133334432 33333222 233 112 233334334 34579999985
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----------------HHHHHHHHHHH----hhccceEEEE
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----------------ARLIESARALT----TRLKWDARVI 435 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----------------~~~~~~~~~~~----~~~~w~~~~~ 435 (458)
+.- .-....++-++-|+|||||.+++.+- ......++++. ..-++++.+.
T Consensus 149 ~~~---------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 219 (232)
T 3ntv_A 149 DAA---------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFL 219 (232)
T ss_dssp ETT---------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred cCc---------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 432 22345678889999999999999211 11223344443 3445666555
Q ss_pred eeccCCCccEEEEEec
Q 012709 436 EIESNSDERLLICQKP 451 (458)
Q Consensus 436 ~~~~~~~~~~~~~~k~ 451 (458)
.. .+++.|++|.
T Consensus 220 p~----~dG~~i~~k~ 231 (232)
T 3ntv_A 220 NI----DDGLAISIKG 231 (232)
T ss_dssp CS----TTCEEEEEEC
T ss_pred Ec----CCceEEEEEC
Confidence 32 2678888874
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.4e-05 Score=67.74 Aligned_cols=110 Identities=7% Similarity=0.043 Sum_probs=74.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|. .... +|+-++-. ..+..+-++ |+ --+..|+.++++. .+||+|.++..
T Consensus 37 ~~vLdiG~G~G~~~~~l~--~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~ 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIA--KRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHH--TTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC
T ss_pred CEEEEeCCCCCHHHHHHH--hcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc
Confidence 589999999999999998 4222 33333332 333333222 33 1123455554443 58999996655
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
..+..++-++-|+ |||.+++.+ ..+.+.++.+.++...|++....
T Consensus 110 ----------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 110 ----------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp ----------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEEE
Confidence 2456788888888 999999976 66778888888888889877764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00015 Score=63.33 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=71.2
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCCCCchhhhcccccccccccccc---------CCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~---------~~~yp~t~dl~h 375 (458)
.+|||+|||.|.++.+|.+. + ..+..+-+.| . +.+ . .+--+..|..+. ++ +.+||+|.
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~--~---~~~--~-~~~~~~~d~~~~~~~~~~~~~~~--~~~~D~i~ 93 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP--M---DPI--V-GVDFLQGDFRDELVMKALLERVG--DSKVQVVM 93 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC--C---CCC--T-TEEEEESCTTSHHHHHHHHHHHT--TCCEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc--c---ccc--C-cEEEEEcccccchhhhhhhccCC--CCceeEEE
Confidence 58999999999999999743 1 2333333333 1 111 1 111112233221 22 36899999
Q ss_pred ccccccccccCCCC--CC------cchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEE-Eeecc---CCC
Q 012709 376 AEGLLSLESGHRHR--CS------TLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARV-IEIES---NSD 442 (458)
Q Consensus 376 ~~~~~~~~~~~~~~--c~------~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~-~~~~~---~~~ 442 (458)
++..+... ... -. ...++-++-|+|+|||.+++.... .....+.+.+.. .|+... ..... ...
T Consensus 94 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (180)
T 1ej0_A 94 SDMAPNMS---GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSR 169 (180)
T ss_dssp ECCCCCCC---SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCC
T ss_pred ECCCcccc---CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCc
Confidence 87776533 110 00 146788999999999999985321 223344444444 365433 22221 223
Q ss_pred ccEEEEEe
Q 012709 443 ERLLICQK 450 (458)
Q Consensus 443 ~~~~~~~k 450 (458)
|..++|++
T Consensus 170 ~~~~~~~~ 177 (180)
T 1ej0_A 170 EVYIVATG 177 (180)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEcc
Confidence 77888775
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.6e-05 Score=74.78 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=58.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----c-----ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-----VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l-----~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
..|||+|||.|.++..|. ....- +|+-++.. ..+..+-++. . .|-..+...+|+ +.+||+|.++
T Consensus 62 ~~vLDiGcGtG~~~~~l~--~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~V~~d 135 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQ--EAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYD 135 (236)
T ss_dssp EEEEEECCTTSHHHHHHH--TSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEEC
T ss_pred CeEEEEeccCCHHHHHHH--hcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC--CCceEEEEEC
Confidence 579999999999999998 54321 44445543 4444443322 1 122222222444 3799999873
Q ss_pred -ccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 378 -GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 378 -~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
..+ .... .+.-....++-|+-|+|||||.+++-+-
T Consensus 136 ~~~~-~~~~-~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 136 TYPL-SEET-WHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCCC-BGGG-TTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred Cccc-chhh-hhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 221 1100 1111233678999999999999998653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.62 E-value=5.7e-05 Score=70.45 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=52.5
Q ss_pred eEEeeccccchhhhhhhhccC--CCeEEEEeecCCCCCCchhhhcc-cccccccccccc--CCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEA--FPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~--~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~--~~~yp~t~dl~h~~~~~~~ 382 (458)
-+|||+|||.|.++..|.+.- ..|.-+-+.|.--...+..+-.+ ++.-+..|-.++ +..++.+||+|.++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~---- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI---- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC----
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec----
Confidence 479999999999988876321 22333222211000011111112 122223344332 123457899998651
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. ..-....++-|+-|+|||||.+++.
T Consensus 135 ~----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 A----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp C----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1111223578999999999999985
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=5.3e-05 Score=76.14 Aligned_cols=137 Identities=20% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhh----ccccc----cccccccccCCCCCCcccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGFV----GVLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~----~rgl~----g~~~~~~~~~~~yp~t~dl~h 375 (458)
+..-.+|+|+|||.|.++.+|.+....+-+. -+|-+..+..+- +.|+- =+-+|..+++ |..||+|.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~ 253 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGT---LVELAGPAERARRRFADAGLADRVTVAEGDFFKPL---PVTADVVL 253 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCCEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEE---EEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---CCCCCEEE
Confidence 4456899999999999999998543222222 222222222222 12332 1234444443 45699999
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEecc--H--H-----------------------HHHHHHHHHhhc
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--R-----------------------LIESARALTTRL 428 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~--~--~-----------------------~~~~~~~~~~~~ 428 (458)
+.+++..+.. -....+|-++-|+|+|||++++-|. . + ..+++++++..-
T Consensus 254 ~~~vl~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 329 (374)
T 1qzz_A 254 LSFVLLNWSD----EDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSA 329 (374)
T ss_dssp EESCGGGSCH----HHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTT
T ss_pred EeccccCCCH----HHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHC
Confidence 9988876621 1124689999999999999998665 2 1 234566677777
Q ss_pred cceEEEEeeccCCCc-----cEEEEEec
Q 012709 429 KWDARVIEIESNSDE-----RLLICQKP 451 (458)
Q Consensus 429 ~w~~~~~~~~~~~~~-----~~~~~~k~ 451 (458)
.++..-...- ++.. .++.++|+
T Consensus 330 Gf~~~~~~~~-~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 330 GLALASERTS-GSTTLPFDFSILEFTAV 356 (374)
T ss_dssp TEEEEEEEEE-CCSSCSSCEEEEEEEEC
T ss_pred CCceEEEEEC-CCCcccCCcEEEEEEEC
Confidence 7774433222 2223 78888875
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.5e-05 Score=71.89 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=60.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----c-cccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G-FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----g-l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|||+|||.|.++.+|.+..... +|+-+|-. ..+..+-++ | +--+..|..+ ++ ++.+||+|.+..++.
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK-YD-FEEKYDMVVSALSIH 120 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTT-CC-CCSCEEEEEEESCGG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhc-cC-CCCCceEEEEeCccc
Confidence 689999999999999998542122 23333332 333333332 1 1112222222 22 237999999998887
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+. .-....+|-|+-|+|||||.+++.+
T Consensus 121 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HLE----DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 652 1122347999999999999999865
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.61 E-value=6.7e-05 Score=71.55 Aligned_cols=133 Identities=9% Similarity=0.092 Sum_probs=75.4
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhcc----cccc----ccccccccCCCCCC--ccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILDR----GFVG----VLHDWCEAFPTYPR--TYDLV 374 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~r----gl~g----~~~~~~~~~~~yp~--t~dl~ 374 (458)
-++|||+|||.|.++.+|.+.-. .. .|+-++-. ..+..+-++ |+-. +..|..+.++..+. +||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 37999999999999999984311 11 23333332 334333332 4321 22344343343333 89999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH------------HHHHHHHHH----HhhccceEEEEeec
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARAL----TTRLKWDARVIEIE 438 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~------------~~~~~~~~~----~~~~~w~~~~~~~~ 438 (458)
.++.-.. ....++-++-|+|||||++++.|-. .....++++ ...-+|+..+...-
T Consensus 141 ~~d~~~~---------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (248)
T 3tfw_A 141 FIDADKP---------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV 211 (248)
T ss_dssp EECSCGG---------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred EECCchH---------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC
Confidence 8654322 2335677888999999999985332 122333443 34446666555221
Q ss_pred c-CCCccEEEEEec
Q 012709 439 S-NSDERLLICQKP 451 (458)
Q Consensus 439 ~-~~~~~~~~~~k~ 451 (458)
. ...+++.|++|+
T Consensus 212 g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 212 GTKGWDGFTLAWVN 225 (248)
T ss_dssp STTCSEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 1 123788888875
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.60 E-value=1.7e-05 Score=80.78 Aligned_cols=113 Identities=22% Similarity=0.222 Sum_probs=74.1
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhcc---------c-c----cc-ccccccc-------c
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR---------G-F----VG-VLHDWCE-------A 363 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~r---------g-l----~g-~~~~~~~-------~ 363 (458)
..|||+|||.|.++..|.+.- ... .|+-+|-. ..+..+-++ | + +- +..|..+ +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG---KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC---EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 579999999999998887321 221 33334433 445554444 4 1 11 1223332 3
Q ss_pred CCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----------------------HHHHH
Q 012709 364 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------------RLIES 420 (458)
Q Consensus 364 ~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----------------------~~~~~ 420 (458)
|+ +.+||+|+++.++... . +...+|-|+-|+|||||++++.+-. -..++
T Consensus 162 ~~--~~~fD~V~~~~~l~~~---~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
T 4fsd_A 162 VP--DSSVDIVISNCVCNLS---T---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLED 233 (383)
T ss_dssp CC--TTCEEEEEEESCGGGC---S---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHH
T ss_pred CC--CCCEEEEEEccchhcC---C---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHH
Confidence 33 4799999999998876 2 2568899999999999999996311 11377
Q ss_pred HHHHHhhccce
Q 012709 421 ARALTTRLKWD 431 (458)
Q Consensus 421 ~~~~~~~~~w~ 431 (458)
+.+++..-.++
T Consensus 234 ~~~ll~~aGF~ 244 (383)
T 4fsd_A 234 FRRLVAEAGFR 244 (383)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCc
Confidence 78888877775
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.7e-05 Score=72.38 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=72.9
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc----ccccc---c-cccccccCCCCC----Ccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGFVG---V-LHDWCEAFPTYP----RTYDL 373 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~-~~~~~~~~~~yp----~t~dl 373 (458)
.+|||+|||.|+++.+|.+.-. .. .|+-++-. ..+..+-+ .|+-. + ..|..+.++..+ .+||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 6899999999999999984311 11 23333332 33333222 24421 1 223323222221 56999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH------------HHHHHHHHH----HhhccceEEEEee
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARAL----TTRLKWDARVIEI 437 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~------------~~~~~~~~~----~~~~~w~~~~~~~ 437 (458)
|..+...+. ...++-++-|+|||||++++.+-. .....++++ ...=++++.+...
T Consensus 137 v~~d~~~~~---------~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 207 (223)
T 3duw_A 137 IFIDADKQN---------NPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQT 207 (223)
T ss_dssp EEECSCGGG---------HHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred EEEcCCcHH---------HHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEec
Confidence 986554332 235778889999999999985322 112233333 3344566666544
Q ss_pred -ccCCCccEEEEEec
Q 012709 438 -ESNSDERLLICQKP 451 (458)
Q Consensus 438 -~~~~~~~~~~~~k~ 451 (458)
...+.+++.++.|.
T Consensus 208 ~~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 208 VGSKGYDGFIMAVVK 222 (223)
T ss_dssp EETTEEEEEEEEEEC
T ss_pred cCCCCCCeeEEEEEe
Confidence 12223788888763
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.58 E-value=6.7e-05 Score=69.00 Aligned_cols=134 Identities=12% Similarity=0.127 Sum_probs=70.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCC-------CC----Cccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPT-------YP----RTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~-------yp----~t~dl~h~ 376 (458)
.+|||+|||.|+|+..|.++...|.-+-+.|..... |+--+-.|..+. ++ ++ .+||+|-+
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~--------~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIA--------GVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCT--------TCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCC--------CeEEEEccccCH-HHHHHHHHHhhcccCCcceEEec
Confidence 689999999999999998543334444444432111 221122333221 10 11 37999987
Q ss_pred cccccccc--c---CCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEEEeec---cCCCccEEE
Q 012709 377 EGLLSLES--G---HRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIEIE---SNSDERLLI 447 (458)
Q Consensus 377 ~~~~~~~~--~---~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~ 447 (458)
+.-....- . .........++-++-|+|||||.+++.-- ......+...++..==++.+.+.. +.+.|-.+|
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v 177 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIM 177 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEEECC------CCEEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEEECCCCccCCCceEEEE
Confidence 65322100 0 00001123567788999999999997421 111234444554432234444432 234588888
Q ss_pred EEe
Q 012709 448 CQK 450 (458)
Q Consensus 448 ~~k 450 (458)
|++
T Consensus 178 ~~~ 180 (191)
T 3dou_A 178 FFG 180 (191)
T ss_dssp EEE
T ss_pred Eee
Confidence 875
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0001 Score=70.75 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=45.6
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceE
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDA 432 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~ 432 (458)
.+||+|-++.+|.... .+.-.+..+|-+|-|+|||||++++.+.. -..+++++++..-..++
T Consensus 155 ~~fD~V~~~~~l~~i~--~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 155 PLADCVLTLLAMECAC--CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEeeehHHHHHhc--CCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 4899999999987651 11224457899999999999999997411 02467777777666664
Q ss_pred EEE
Q 012709 433 RVI 435 (458)
Q Consensus 433 ~~~ 435 (458)
...
T Consensus 233 ~~~ 235 (263)
T 2a14_A 233 EQL 235 (263)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.57 E-value=4.2e-05 Score=74.21 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=46.9
Q ss_pred CccccccccccccccccCCCC-CCcchhhhhhcccccCCceEEEecc----------------HHHHHHHHHHHhhccce
Q 012709 369 RTYDLVHAEGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIRDT----------------ARLIESARALTTRLKWD 431 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~-c~~~~~~~e~drilrp~g~~~~~d~----------------~~~~~~~~~~~~~~~w~ 431 (458)
.+||+|-+..+|..+ ... -....+|-|+-|+|||||++++.+. .-..+++++++..-.++
T Consensus 173 ~~fD~V~~~~~l~~~---~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 249 (289)
T 2g72_A 173 LPADALVSAFCLEAV---SPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYK 249 (289)
T ss_dssp SSEEEEEEESCHHHH---CSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred CCCCEEEehhhhhhh---cCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCe
Confidence 579999999988775 222 2466889999999999999998521 11357788888877776
Q ss_pred EEEE
Q 012709 432 ARVI 435 (458)
Q Consensus 432 ~~~~ 435 (458)
....
T Consensus 250 ~~~~ 253 (289)
T 2g72_A 250 VRDL 253 (289)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=74.63 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=61.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhcccc---ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|.+.... .|+-++....+.. +-+.|+ |-+++.=.+.++ +|.+||+|.+..+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~~----~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGAR----KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMG 139 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCS----EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCB
T ss_pred CEEEEeccCcCHHHHHHHhcCCC----EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChh
Confidence 68999999999999888843221 3333443333333 223444 334443334443 45899999986654
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
... ...-.+..++-+++|+|+|||.+++
T Consensus 140 ~~l---~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 140 YFL---LRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp TTB---TTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred hcc---cchHHHHHHHHHHHhhCCCCeEEEE
Confidence 444 2233466789999999999999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.3e-05 Score=75.17 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhh----hccccc----cccccccccCCCCCCcccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI----LDRGFV----GVLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~----~~rgl~----g~~~~~~~~~~~yp~t~dl~h 375 (458)
|....+|+|+|||.|.++.+|.+....+-+ +-.|-+..+..+ -+.|+- =+-+|..+++ |..||+|.
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---p~~~D~v~ 273 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRG---TLLERPPVAEEARELLTGRGLADRCEILPGDFFETI---PDGADVYL 273 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---CSSCSEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeE---EEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCC---CCCceEEE
Confidence 456799999999999999999854223222 222222222222 223431 2234554444 44899999
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH------------H------------HHHHHHHHHhhccce
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------R------------LIESARALTTRLKWD 431 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~------------~------------~~~~~~~~~~~~~w~ 431 (458)
+.+++..+.. -....+|-++=|.|+|||+++|-|.. + ..++.+++++.-.++
T Consensus 274 ~~~vlh~~~d----~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 274 IKHVLHDWDD----DDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp EESCGGGSCH----HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred hhhhhccCCH----HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 9998876621 11235899999999999999985311 1 135677777777887
Q ss_pred EEEEeeccCCCccEEEEEe
Q 012709 432 ARVIEIESNSDERLLICQK 450 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~k 450 (458)
..-......+...++.++|
T Consensus 350 ~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 350 VERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp EEEEEECSSSSEEEEEEEE
T ss_pred EEEEEECCCCCcEEEEEEe
Confidence 5554331233467777776
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0001 Score=69.64 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=79.4
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCC---CCCccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPT---YPRTYDLVHA 376 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~---yp~t~dl~h~ 376 (458)
-.+|||+|||.|.++..|....... .|+-+|.. ..+.++-+ .|+ +-+++.=.+.++. .+.+||+|.+
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3689999999998887776222221 23333433 33333222 244 3333322233332 3578999997
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEecc---HHHHHHHHHHHhhccceEEEEe---ecc-CCCccEEEEE
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT---ARLIESARALTTRLKWDARVIE---IES-NSDERLLICQ 449 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~---~~~~~~~~~~~~~~~w~~~~~~---~~~-~~~~~~~~~~ 449 (458)
..+ ..+..++-++-|+|+|||.+++-+. .+.+.++.+.++...++..... ... .+...+++.+
T Consensus 148 ~~~----------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 148 RAV----------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIR 217 (240)
T ss_dssp ECC----------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEE
T ss_pred ecc----------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEE
Confidence 552 2356788999999999999998643 3445666677777777754332 111 1225566777
Q ss_pred ecccc
Q 012709 450 KPFFK 454 (458)
Q Consensus 450 k~~w~ 454 (458)
|.=.+
T Consensus 218 k~~~~ 222 (240)
T 1xdz_A 218 KIKNT 222 (240)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 76443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.53 E-value=4e-05 Score=69.85 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=70.0
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-cccc-ccccccCCCCCCcccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~-~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
+|||+|||.|.++..|. .... +|+-++.. ..+..+-++ |+ +-++ .|. +.++.-+.+||+|.+. |.
T Consensus 32 ~vLdiGcG~G~~~~~l~--~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLA--SLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL-ADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHH--TTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT-TTBSCCTTTCSEEEEE--CC
T ss_pred CEEEECCCCCHhHHHHH--hCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh-hhcCCCcCCccEEEEE--hh
Confidence 89999999999999998 4433 55555543 444444333 33 1112 122 2223223689999863 22
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEecc-----------------HHHHHHHHHHHhhccceEEEE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----------------ARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----------------~~~~~~~~~~~~~~~w~~~~~ 435 (458)
.+ ..-....+|-++-|+|+|||.+++.+. .-..++++++++ .|++...
T Consensus 104 ~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 104 HL----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CC----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred cC----CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 22 122456789999999999999998631 112467777777 6775543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=69.92 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=76.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cccc-ccccccCCCC-CCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVL-HDWCEAFPTY-PRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~~-~~~~~~~~~y-p~t~dl~h~~ 377 (458)
.+|||+|||.|.++..|.. ..-. +|+-++-. ..+..+-+ .|+ +-++ .|..+....+ +.+||+|-++
T Consensus 51 ~~vLDlG~G~G~~~~~la~--~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLST--RTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp CEEEETTCTTTHHHHHHHT--TCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CEEEEcCCchhHHHHHHHH--hcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 5799999999999999984 3221 44444443 33333222 243 2222 2333332223 4799999987
Q ss_pred ccccccc--------------cCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEE
Q 012709 378 GLLSLES--------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 434 (458)
Q Consensus 378 ~~~~~~~--------------~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~ 434 (458)
--|.... .....+.+..++-++-|+|||||.+++--..+.+.++...+....|+...
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 5542210 00112556789999999999999999976666778888888888887543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=1.3e-05 Score=78.12 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=59.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-----cc-ccccccccCCCCCCcccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-----VG-VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-----~g-~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.|||+|||.|.++..|.+... +|+-++-. ..+..+-++ |+ +- +..|..+ ++. +.+||+|.+.
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-----EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA-FAL-DKRFGTVVIS 157 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-----CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB-CCC-SCCEEEEEEC
T ss_pred cEEEEeccCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc-CCc-CCCcCEEEEC
Confidence 799999999999999994432 34444433 444443332 21 11 2223332 443 7899998854
Q ss_pred -ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 -GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 -~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.++... ..-....+|-|+-|+|||||.+++.
T Consensus 158 ~~~~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 158 SGSINEL----DEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHHHTTS----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccC----CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444432 2233567899999999999999995
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.1e-05 Score=71.95 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=71.2
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc----cccc---ccc-ccccccCCCCC-----Cccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGFV---GVL-HDWCEAFPTYP-----RTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~-~~~~~~~~~yp-----~t~d 372 (458)
.+|||+|||.|.++.+|.+.-. .. .|+-++.. ..+..+-+ .|+- -++ .|..+.++..+ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 5899999999999999984310 11 22333322 22322222 2332 111 23333332222 6899
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH------------HHHHHHHHHH----hhccceEEEEe
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARALT----TRLKWDARVIE 436 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~------------~~~~~~~~~~----~~~~w~~~~~~ 436 (458)
+|..+.-.. ....++-++=|+|||||++++.|-. .....++++. ..-+|+.....
T Consensus 143 ~v~~~~~~~---------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 213 (225)
T 3tr6_A 143 LIYIDADKA---------NTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIP 213 (225)
T ss_dssp EEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred EEEECCCHH---------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 998544322 2345677888999999999985432 1122344433 33456665553
Q ss_pred eccCCCccEEEEEec
Q 012709 437 IESNSDERLLICQKP 451 (458)
Q Consensus 437 ~~~~~~~~~~~~~k~ 451 (458)
. .+++++++|.
T Consensus 214 ~----~dG~~~~~k~ 224 (225)
T 3tr6_A 214 I----GDGLTLARKK 224 (225)
T ss_dssp S----TTCEEEEEEC
T ss_pred c----CCccEEEEEC
Confidence 2 2678888874
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.6e-05 Score=71.89 Aligned_cols=96 Identities=22% Similarity=0.228 Sum_probs=58.9
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-cc-ccccccccCCCCCCcccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-.+|||+|||.|.++..|.+. .. +|+-++-. ..+..+-+ .|+ +- +-.|..+ ++ .+.+||+|.+...
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~--~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~ 114 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAER--GY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFS 114 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHT--TC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSS
T ss_pred CCEEEEeCCCCCHHHHHHHHC--CC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCC
Confidence 368999999999999999843 32 44555543 34443332 232 11 2223333 33 3578999985422
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.-.+ ...-....+|-++-|+|+|||.+++.
T Consensus 115 ~~~~---~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 115 TIMY---FDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGG---SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhc---CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 1122 11223557889999999999999985
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=7.6e-05 Score=71.54 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=72.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-cccc-ccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~-~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++.++..... +|+-++-. ..+..+-++ |+ +-++ .|+.+.++ +.+||+|.++.++
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~-----~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG-----KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYA 194 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCH
T ss_pred CEEEEecCCCcHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcH
Confidence 5899999999999988874332 44444432 344443332 33 2222 23333333 3589999976554
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
.. +..++-++-|+|+|||++++.+- ....+.+++.++...++.....
T Consensus 195 ~~---------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 195 EL---------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp HH---------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred HH---------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEe
Confidence 32 34678899999999999998642 2346778888887778765443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.50 E-value=2.2e-05 Score=71.72 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=58.7
Q ss_pred eEEeeccccchhhhh-hhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNS-ALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa-~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.+++ .+. .... +|+-++.. ..+..+-++ |. +-.. .|.. .++.-+.+||+|.+.++
T Consensus 25 ~~vLDiGcG~G~~~~~~~~--~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFV--EDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-KLPFKDESMSFVYSYGT 98 (209)
T ss_dssp SEEEEESCCSSSCTHHHHH--HTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTT-SCCSCTTCEEEEEECSC
T ss_pred CEEEEECCCCCHHHHHHHH--hCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchh-hCCCCCCceeEEEEcCh
Confidence 689999999999854 444 2222 34444443 333333222 21 1111 2222 23322478999998887
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..+ . .-....++-|+-|+|+|||.+++.+
T Consensus 99 l~~~---~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 99 IFHM---R-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGGS---C-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhC---C-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 7654 1 2345678999999999999999864
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00013 Score=67.43 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=68.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---ccc-ccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVL-HDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~-~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|+|+|||.|.++..|..+... |+-+|-. ..+..+-+ .|+- -++ .|..+.++.. .+||+|-.++
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~~-----v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~ 130 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGGR-----AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGG 130 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCE-----EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECS
T ss_pred CEEEEecCCCCHHHHHHHHcCCE-----EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECC
Confidence 67999999999999998844333 3333332 33433322 2332 111 2333323322 3688887443
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccceEEEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
. .... ++-++-|+|||||.+++.. ..+...++.+.++...+++.-.
T Consensus 131 ~----------~~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 131 G----------GSQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp C----------CCHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEE
T ss_pred c----------ccHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEE
Confidence 1 1344 8899999999999999964 4566777777777777765443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00011 Score=68.02 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=73.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccc-cccccccCCC-C-CCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGV-LHDWCEAFPT-Y-PRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~-~~~~~~~~~~-y-p~t~dl~h~~ 377 (458)
..|+|+|||.|.|+.+|....... +|+-++-. ..+..+-+ .|+ +-+ ..|..+ ++. + +.+||+|.++
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEE
T ss_pred CeEEEEccCcCHHHHHHHHHCCCC---CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEE
Confidence 569999999999999887432122 34444443 34443332 233 112 223332 221 2 4689999876
Q ss_pred ccccccc--cCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEE
Q 012709 378 GLLSLES--GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 378 ~~~~~~~--~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
......+ ....+-....++-++-|+|+|||.+++. |..+..+.+.+++....|+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 3321110 0011222457899999999999999996 46566777777777767775544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00017 Score=67.18 Aligned_cols=120 Identities=12% Similarity=0.074 Sum_probs=70.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccc-cccccc---cCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGV-LHDWCE---AFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~-~~~~~~---~~~~yp~t~dl~h~ 376 (458)
..|||+|||.|.++.+|..+.... +|+-++-. .-+..+-+ .|+ +-+ ..|..+ .|+ +.+||.|+.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~--~~~~d~v~~ 114 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYL 114 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEE
T ss_pred ceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC--cCCcCEEEE
Confidence 469999999999999997432222 44444543 33333322 344 112 223322 132 368998875
Q ss_pred ccccccccc---CCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEE
Q 012709 377 EGLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 377 ~~~~~~~~~---~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~ 433 (458)
... ..|.. ...+-....+|-|+-|+|+|||.+++. |.....+.+.+.+....|+..
T Consensus 115 ~~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 115 NFS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp ESC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred ECC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 321 11100 012333457899999999999999986 566666676666666566543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.3e-05 Score=74.03 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=84.0
Q ss_pred CCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc----cc----ccccccccccCCCCCCcccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r----gl----~g~~~~~~~~~~~yp~t~dl~h 375 (458)
|.. .+|+|+|||.|.++.+|.+..... .++-.|-+..+..+-++ |+ --+-+|..++ +|..||++.
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 238 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE---VPSNGDIYL 238 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC---CCSSCSEEE
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC---CCCCCCEEE
Confidence 456 899999999999999998542222 23333334444443322 32 2233455443 567899999
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-------------H------------HHHHHHHHHhhccc
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-------------R------------LIESARALTTRLKW 430 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-------------~------------~~~~~~~~~~~~~w 430 (458)
+..++..+.. -....+|-++-|.|+|||++++-|.. + ..++++++++.-.+
T Consensus 239 ~~~vl~~~~~----~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 314 (334)
T 2ip2_A 239 LSRIIGDLDE----AASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGF 314 (334)
T ss_dssp EESCGGGCCH----HHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred EchhccCCCH----HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCC
Confidence 9998876621 12257899999999999999986421 0 13455666766677
Q ss_pred eEEEEeeccCCCccEEEEEe
Q 012709 431 DARVIEIESNSDERLLICQK 450 (458)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~k 450 (458)
+..-... .++...++.++|
T Consensus 315 ~~~~~~~-~~~~~~~i~~~~ 333 (334)
T 2ip2_A 315 AVERIVD-LPMETRMIVAAR 333 (334)
T ss_dssp EEEEEEE-ETTTEEEEEEEE
T ss_pred ceeEEEE-CCCCCEEEEEEe
Confidence 6433322 123366777776
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.46 E-value=2.3e-05 Score=73.12 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=74.6
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhc----cccc---c-ccccccccCCCCC-----Ccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFV---G-VLHDWCEAFPTYP-----RTY 371 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g-~~~~~~~~~~~yp-----~t~ 371 (458)
-++|||+|||.|.++..|.+. .... .|+-++.. ..+.++-+ .|+- - +..|..+.++..+ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 378999999999999998832 1122 23333332 33333322 2432 1 2234444444444 689
Q ss_pred ccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEee--ccC-CCc
Q 012709 372 DLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEI--ESN-SDE 443 (458)
Q Consensus 372 dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~--~~~-~~~ 443 (458)
|+|.+++....+. ....++-++ |+|||||.+++.|- ..+++.+++ .=++++..... +.. ..+
T Consensus 136 D~V~~d~~~~~~~------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~d 205 (221)
T 3u81_A 136 DMVFLDHWKDRYL------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHYSSYLEYMKVVD 205 (221)
T ss_dssp SEEEECSCGGGHH------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEEEEEEEETTTTEEE
T ss_pred EEEEEcCCcccch------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEEEcccccccCCCCC
Confidence 9998776554441 122456667 99999999998643 344444443 33566665532 111 126
Q ss_pred cEEEEEec
Q 012709 444 RLLICQKP 451 (458)
Q Consensus 444 ~~~~~~k~ 451 (458)
++.++.+.
T Consensus 206 G~~~~~~~ 213 (221)
T 3u81_A 206 GLEKAIYQ 213 (221)
T ss_dssp EEEEEEEC
T ss_pred ceEEEEEe
Confidence 77777654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.45 E-value=2.8e-05 Score=77.65 Aligned_cols=138 Identities=12% Similarity=0.033 Sum_probs=85.0
Q ss_pred CCc-eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc----cccc----cccccccccCCCCCCccccc
Q 012709 304 YNM-VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLV 374 (458)
Q Consensus 304 ~~~-~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~----rgl~----g~~~~~~~~~~~yp~t~dl~ 374 (458)
|.. .+.|+|+|||.|.++.+|.+....+-+.. .|-+..+..+-+ .|+- -+-+|..+.-+..|..||++
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 252 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQI---WDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEE---EECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEE
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEE---EECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEE
Confidence 445 78999999999999999985422332222 222333333222 2432 22334433321246789999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEecc--------H--H-----------------HHHHHHHHHhh
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--------A--R-----------------LIESARALTTR 427 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~--------~--~-----------------~~~~~~~~~~~ 427 (458)
.+.+++..+. .-....+|-++-|+|+|||.+++-|. . . ..++++++++.
T Consensus 253 ~~~~vlh~~~----~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (352)
T 3mcz_A 253 MLNDCLHYFD----AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRD 328 (352)
T ss_dssp EEESCGGGSC----HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred EEecccccCC----HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHH
Confidence 9999988762 11245789999999999999998541 1 0 02445666666
Q ss_pred ccceEEEEeeccCCCccEEEEEec
Q 012709 428 LKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 428 ~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
-.++..-.. . +...+++++|+
T Consensus 329 aGf~~~~~~--~-g~~~l~~a~kp 349 (352)
T 3mcz_A 329 AGLAVGERS--I-GRYTLLIGQRS 349 (352)
T ss_dssp TTCEEEEEE--E-TTEEEEEEECC
T ss_pred CCCceeeec--c-CceEEEEEecC
Confidence 666654422 1 23678888886
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=5.5e-05 Score=76.15 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=61.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhcccc---ccccccccccCCCCC-Ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl---~g~~~~~~~~~~~yp-~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|.+ .+.. .|+-++....+.. +-+.|+ |-+++.=.+.++ +| .+||+|.+..+
T Consensus 68 ~~VLDvGcG~G~~~~~la~--~g~~--~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAK--AGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWM 142 (349)
T ss_dssp CEEEEESCTTSHHHHHHHH--TTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCC
T ss_pred CEEEEEeccchHHHHHHHH--CCCC--EEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccc
Confidence 6899999999999999984 3321 2233333322322 233454 333332233332 34 79999998776
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
...+ ...-.+..++-+++|+|+|||.++.
T Consensus 143 ~~~l---~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCL---FYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTB---TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccc---cCchhHHHHHHHHHHhCCCCCEEcc
Confidence 5555 3445677889999999999999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0002 Score=71.62 Aligned_cols=137 Identities=21% Similarity=0.242 Sum_probs=83.6
Q ss_pred CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc----ccc----ccccccccccCCCCCCccccccc
Q 012709 305 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 305 ~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~----rgl----~g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
..-.+|+|+|||.|.++.+|.+....+-+. -.|-+..+..+-+ .|+ -=+-+|+.+++ |..||++.+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSAT---VLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEE---EecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---CCCccEEEE
Confidence 356799999999999999998543333222 2222333333222 233 12334555443 456999999
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEeccH--------H------------------HHHHHHHHHhhccc
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------R------------------LIESARALTTRLKW 430 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~--------~------------------~~~~~~~~~~~~~w 430 (458)
.+++..+. + -....+|-++-|+|+|||.+++-|.. . ..++++++++.-.+
T Consensus 256 ~~vl~~~~---~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 331 (360)
T 1tw3_A 256 SFVLLNWP---D-HDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL 331 (360)
T ss_dssp ESCGGGSC---H-HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTE
T ss_pred cccccCCC---H-HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCC
Confidence 88887662 1 11246899999999999999986533 0 13456677777777
Q ss_pred eEEEEeeccCC----CccEEEEEec
Q 012709 431 DARVIEIESNS----DERLLICQKP 451 (458)
Q Consensus 431 ~~~~~~~~~~~----~~~~~~~~k~ 451 (458)
+..-...-.+. ...++.++|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 332 VVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred eEEEEEeCCCCcccCccEEEEEEeC
Confidence 75443222221 1567888874
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00016 Score=68.66 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=63.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc------------cccc---ccccccccCCC-C-CC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------------GFVG---VLHDWCEAFPT-Y-PR 369 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r------------gl~g---~~~~~~~~~~~-y-p~ 369 (458)
..|||+|||.|+|+.+|....... +|+-+|-. .-+..+-++ |+-. +-.|..+.++. + +.
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPED---LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTS---EEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCC---CEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 579999999999999887433222 34444432 233322211 4311 11222221221 1 35
Q ss_pred cccccccccccc-cc-cc--CCCCCCcchhhhhhcccccCCceEEE-eccHHHHHHHHHHHhhccc
Q 012709 370 TYDLVHAEGLLS-LE-SG--HRHRCSTLDIFTEIDRILRPEGWVII-RDTARLIESARALTTRLKW 430 (458)
Q Consensus 370 t~dl~h~~~~~~-~~-~~--~~~~c~~~~~~~e~drilrp~g~~~~-~d~~~~~~~~~~~~~~~~w 430 (458)
++|.|... |. .+ +. ...+--...++-++-|+|+|||.+++ .|..+..+.+.+.+..-.+
T Consensus 128 ~~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 128 QLSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp CEEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred ccCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 77776521 21 11 00 01122224789999999999999998 4766666666665555443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00016 Score=68.81 Aligned_cols=133 Identities=11% Similarity=0.149 Sum_probs=72.8
Q ss_pred eeEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhccccc---ccc-ccccccCCCC-----CCccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---GVL-HDWCEAFPTY-----PRTYDLV 374 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl~---g~~-~~~~~~~~~y-----p~t~dl~ 374 (458)
-++|||+|||.|.++.+|.+. +..|..+-+-|.-....-..+-..|+- -++ .|-.+.++.. +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 478999999999999988742 122333333222111111122223442 222 2222323333 4689999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH------------HHHHHHHHHHhhc----cceEEEEeec
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARALTTRL----KWDARVIEIE 438 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~------------~~~~~~~~~~~~~----~w~~~~~~~~ 438 (458)
.++..... ...++-++-|+|||||++++.|-. .....++++.+.+ ++++.+...
T Consensus 141 ~~d~~~~~---------~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 210 (242)
T 3r3h_A 141 FIDADKTN---------YLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI- 210 (242)
T ss_dssp EEESCGGG---------HHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS-
T ss_pred EEcCChHH---------hHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc-
Confidence 86654322 234677888999999999984321 1223344444444 455544432
Q ss_pred cCCCccEEEEEecc
Q 012709 439 SNSDERLLICQKPF 452 (458)
Q Consensus 439 ~~~~~~~~~~~k~~ 452 (458)
.++++|++|.-
T Consensus 211 ---~dG~~~~~k~~ 221 (242)
T 3r3h_A 211 ---ADGMFLVQPIA 221 (242)
T ss_dssp ---SSCEEEEEEC-
T ss_pred ---cCceEEEEEcC
Confidence 26789988753
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=72.02 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=81.7
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc----ccccc----ccccccccCCCCCCcccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~----rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.-.+|+|+|||.|.++.+|.+.-... .++-.|-+..+..+-+ .|+-+ +-+|..+. .+|..||+|.+.
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~ 239 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLP 239 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEc
Confidence 45789999999999999998542122 2333333322222222 23321 22343331 345669999998
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH--------H-------------------HHHHHHHHHhhccc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------R-------------------LIESARALTTRLKW 430 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~--------~-------------------~~~~~~~~~~~~~w 430 (458)
+++..+. .-....+|-++-|+|+|||++++-|.. . ..++++++++.-.+
T Consensus 240 ~~l~~~~----~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf 315 (335)
T 2r3s_A 240 NFLHHFD----VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGF 315 (335)
T ss_dssp SCGGGSC----HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTC
T ss_pred chhccCC----HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCC
Confidence 8887662 123457899999999999998884321 0 14566777777777
Q ss_pred eEEEEeeccCCCccEEEEEec
Q 012709 431 DARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~k~ 451 (458)
+..-... ..+...+++++++
T Consensus 316 ~~~~~~~-~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 316 SHSQLHS-LPTTQQQVIVAYK 335 (335)
T ss_dssp SEEEEEC-CTTSSSEEEEEEC
T ss_pred CeeeEEE-CCCCceeEEEecC
Confidence 6444322 2223567777654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.42 E-value=5.6e-05 Score=75.40 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=60.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhh----hcccc---ccccccccccCCCCC-Ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~----~~rgl---~g~~~~~~~~~~~yp-~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..+.+ .+.- .|+-++....+..+ -+.|+ |-+++.-.+.++ .| .+||+|.+..+
T Consensus 40 ~~VLDiGcGtG~ls~~la~--~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAK--HGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWM 114 (328)
T ss_dssp CEEEEETCTTSHHHHHHHH--TCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCC
T ss_pred CEEEEecCccHHHHHHHHH--CCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCc
Confidence 5899999999999988873 3321 23333333223322 22354 333333233333 34 78999998866
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
+..+ ...-.+..++-+++|+|+|||.++
T Consensus 115 ~~~l---~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 115 GYFL---LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTB---STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhc---ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 5544 334456688999999999999998
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00026 Score=68.64 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=70.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC---CCchh-hhccccccc--cccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT---NHLPM-ILDRGFVGV--LHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~---~~l~~-~~~rgl~g~--~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
..|||+|||.|+|+..|.++ ..|.-+-+.|.-.. +.++. .+..++.-+ -.|-. .++ +.+||+|-++..+.
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~V~sd~~~~ 151 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIH-TLP--VERTDVIMCDVGES 151 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCCC
T ss_pred CEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHh-HCC--CCCCcEEEEeCccc
Confidence 68999999999999999854 45666655553100 11100 000011111 12222 134 57899998765411
Q ss_pred ccccCCCCCCc-----chhhhhhcccccCCc--eEEEe----ccHHHHHHHHHHHhhccceEEEEeec--cCCCccEEEE
Q 012709 382 LESGHRHRCST-----LDIFTEIDRILRPEG--WVIIR----DTARLIESARALTTRLKWDARVIEIE--SNSDERLLIC 448 (458)
Q Consensus 382 ~~~~~~~~c~~-----~~~~~e~drilrp~g--~~~~~----d~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~ 448 (458)
. ..-.+ ..+|-++.|+|+||| .|++. +..++++.++.+..... .+.+.+.- +.+.|..+||
T Consensus 152 ~-----~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~ 225 (265)
T 2oxt_A 152 S-----PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTS 225 (265)
T ss_dssp C-----SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEES
T ss_pred C-----CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEe
Confidence 0 00000 126778999999999 99985 34433444444433222 34444411 2334767776
Q ss_pred Ee
Q 012709 449 QK 450 (458)
Q Consensus 449 ~k 450 (458)
.+
T Consensus 226 ~~ 227 (265)
T 2oxt_A 226 RA 227 (265)
T ss_dssp SC
T ss_pred cC
Confidence 43
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=70.99 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=77.6
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-------CCeEEEeeccCCCC-CCCCCe
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-------LPAMIGSFASKQLP-YPSLSF 109 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-------~~~~~~~~d~~~Lp-fp~~sF 109 (458)
...+.+|||+.||.|.-+.+|+..+ ....|+++|+++.-++..+++ + .++.+...|...++ ...+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 3455799999999999999998865 356799999999877665543 2 25677777776653 445789
Q ss_pred eEEEe----ccc---ccc------cccc----------HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 110 DMLHC----ARC---GVD------WDQK----------DGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 110 D~I~~----~~~---l~~------~~~~----------~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
|.|++ +.. ... +... ..++|..+.+.|||||+++.++-...+
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 99994 331 111 1111 125788899999999999999976543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.41 E-value=4.1e-05 Score=70.63 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=55.7
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhh----cccc---cccc-ccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMIL----DRGF---VGVL-HDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~----~rgl---~g~~-~~~~~~~~~yp~t~dl~h~~ 377 (458)
++|||+|||.|.++.+|.+.-. .. .|+-++-. ..+..+- ..|+ +-++ .|..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 6899999999999999873311 11 22223322 2232222 2243 2122 233343344456 9999755
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.- ......++-++-|+|||||.+++.+
T Consensus 134 ~~---------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD---------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT---------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC---------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 21 2345577889999999999999854
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=3.2e-05 Score=74.57 Aligned_cols=99 Identities=17% Similarity=0.060 Sum_probs=60.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cccc-ccccccCCC-CCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPT-YPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~-~~~~~~~~~-yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++..|... +.. +|+-++-. ..+..+-++ |+ +-+. .|..+ ++. -+.+||+|.+.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~--~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERA--GIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVISSQ 140 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHH--TCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHHC--CCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc-cccCCCCCcCEEEEC
Confidence 58999999999999998733 211 33333432 333333222 32 2222 22222 222 25789999988
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.++...- .+.-....+|-|+-|+|+|||.+++..
T Consensus 141 ~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 141 FSFHYAF--STSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp SCGGGGG--SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhhhhc--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8774310 112235578999999999999999864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00028 Score=70.72 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=62.4
Q ss_pred CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc----cccc----ccccccccCCCCCCccccccc
Q 012709 305 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 305 ~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r----gl~g----~~~~~~~~~~~yp~t~dl~h~ 376 (458)
..-.+|+|+|||.|.++.+|.++...+=+. -+|-+..+..+-++ |+-+ +-+|..+. .+|. +|++.+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v~~ 262 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDST---ILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAVLF 262 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEE---EEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEE---EEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEEEE
Confidence 356899999999999999998542222222 22223333333322 4422 23344332 2233 499999
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
..++..+. + -....+|-++-|+|+|||.+++-|
T Consensus 263 ~~vlh~~~---d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 263 CRILYSAN---E-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp ESCGGGSC---H-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred echhccCC---H-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 98887762 1 124578999999999999998855
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=2.8e-05 Score=76.03 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 367 YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 367 yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+.+||+|.+.+++...+-......+..++-++-|+|||||++|+.
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4579999999888754310002346678899999999999999995
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00042 Score=66.33 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=80.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc--ccccccccccCC---CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFP---TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl--~g~~~~~~~~~~---~yp~t~dl~h~~ 377 (458)
.+|+|+|||.|.++..|....... .|+-+|.. ..+.++- +-|+ +-++|.-.+.++ .++.+||+|-+.
T Consensus 82 ~~vLDiG~G~G~~~i~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 82 LRVLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CEEEEETCTTTTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 589999999999887776322222 23344433 3333322 2355 344444334443 345789999854
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec---cHHHHHHHHHHHhhccceEEEEe-e--ccCCC-ccEEEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---TARLIESARALTTRLKWDARVIE-I--ESNSD-ERLLICQK 450 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d---~~~~~~~~~~~~~~~~w~~~~~~-~--~~~~~-~~~~~~~k 450 (458)
.+ .++..++-++-|+|+|||.+++-. ..+.+.++++.++.+.++..-.. . ..... ..+++.+|
T Consensus 159 a~----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 159 AV----------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp SS----------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred Cc----------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEe
Confidence 32 245677888999999999988743 34566677777777888754332 2 11122 45566677
Q ss_pred ccccc
Q 012709 451 PFFKR 455 (458)
Q Consensus 451 ~~w~~ 455 (458)
.=.++
T Consensus 229 ~~~t~ 233 (249)
T 3g89_A 229 TAPTP 233 (249)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 54444
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.39 E-value=6.2e-05 Score=69.50 Aligned_cols=120 Identities=11% Similarity=0.045 Sum_probs=73.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-cc--------------ccccccccccCCCCC---
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GF--------------VGVLHDWCEAFPTYP--- 368 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-gl--------------~g~~~~~~~~~~~yp--- 368 (458)
..|||+|||.|.++..|.+++. .|+-+|-+ .-|..+.+| ++ ..-..=.|..+...|
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~-----~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC-----EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC-----eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 4799999999999999985433 45555543 444444443 11 011111222233333
Q ss_pred -CccccccccccccccccCCCCCCcchhhhhhcccccCCce--EEEeccH----------HHHHHHHHHHhhccceEEEE
Q 012709 369 -RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGW--VIIRDTA----------RLIESARALTTRLKWDARVI 435 (458)
Q Consensus 369 -~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~--~~~~d~~----------~~~~~~~~~~~~~~w~~~~~ 435 (458)
.+||+|-+.++|..+. ......++-||-|+|||||. ++.-+.. -..++++.+... .|++...
T Consensus 99 ~~~fD~v~~~~~l~~l~----~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp HHSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CCCEEEEEECcchhhCC----HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 5899999877776551 22334578899999999998 3322210 125778888877 7886655
Q ss_pred ee
Q 012709 436 EI 437 (458)
Q Consensus 436 ~~ 437 (458)
..
T Consensus 174 ~~ 175 (203)
T 1pjz_A 174 GG 175 (203)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.37 E-value=8.9e-05 Score=72.00 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=61.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccc-ccccccccc-C---CCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFV-GVLHDWCEA-F---PTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~-g~~~~~~~~-~---~~yp~t~dl~h~~~~~~ 381 (458)
..|||+|||.|.++..|.++.. .|+-++.+ .-|..+-++--- .+-.+|.+. + ...+.+||+|-++.++.
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~-----~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA-----SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred CEEEEEeCcchHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhH
Confidence 5799999999999999985443 34444443 444444332100 122233221 1 12246899999998887
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+. .-....++-+|-|+| |||.+++.
T Consensus 122 ~~~----~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 122 RFT----TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GSC----HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred hCC----HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 651 223556899999999 99999986
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.35 E-value=4.6e-05 Score=71.73 Aligned_cols=97 Identities=9% Similarity=-0.081 Sum_probs=59.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----ccccccccccc-C-CCCC--Cccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEA-F-PTYP--RTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~~~~~~~-~-~~yp--~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|.+... +|+-++-. ..+..+-++- +--+..|..+. + ..++ ..||+|.+..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-----RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-----CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-----CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 5699999999999999985433 34444433 3344333321 11111222221 0 0111 2389999888
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
++.... .-....+|-|+-|+|+|||++++.+
T Consensus 133 ~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 133 GFHHIP----VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp SSTTSC----GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hhhcCC----HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 887652 2345688999999999999988754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=6.3e-05 Score=74.38 Aligned_cols=127 Identities=12% Similarity=0.080 Sum_probs=72.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccc---cCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCE---AFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~---~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|+++|.++.+.... .|+-++-. ..+..+-++ |+ .-..-.|. .++ +.+||+|....+
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~ 197 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL 197 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred CEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC
Confidence 689999999999987765321222 33333433 444443332 55 21111111 133 478999975433
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHH---H-H-HHHHhhccceEEEEeeccCC-CccEEEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIE---S-A-RALTTRLKWDARVIEIESNS-DERLLICQKP 451 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~---~-~-~~~~~~~~w~~~~~~~~~~~-~~~~~~~~k~ 451 (458)
. -+...++-|+-|+|||||.+++++....-. . + ....+ .|+.....+..+. ...|.+++|.
T Consensus 198 ~---------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~v~N~vv~a~k~ 264 (298)
T 3fpf_A 198 A---------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGKVNNTSVLVFKC 264 (298)
T ss_dssp C---------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTTCCCEEEEEEEC
T ss_pred c---------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCCcCcEEEEEEcc
Confidence 1 123468999999999999999987543210 0 0 11222 5666555444332 2668888774
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=4e-05 Score=78.82 Aligned_cols=113 Identities=14% Similarity=0.240 Sum_probs=67.7
Q ss_pred eeEEeecccc------chhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhccccccccccccc-cCCC----CCCccc
Q 012709 307 VRNVLDMNAH------FGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE-AFPT----YPRTYD 372 (458)
Q Consensus 307 ~r~~~d~~~~------~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~-~~~~----yp~t~d 372 (458)
-.+|||+||| .||.+..|..+ +..|.-+-+.|.- . .....+-=+..|-.+ +|.. -+.+||
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m----~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS----H--VDELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG----G--GCBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH----h--hcCCCcEEEEecccccchhhhhhcccCCcc
Confidence 3789999999 78877777632 1223333333321 1 111111111222211 1210 026899
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc------------------HHHHHHHHHHHhhccceE
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------------ARLIESARALTTRLKWDA 432 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~------------------~~~~~~~~~~~~~~~w~~ 432 (458)
+|.+++. .+ -......|-|+=|+|||||++++.|- ..+++.++++...++|.-
T Consensus 291 lVisdgs--H~-----~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 291 IVIDDGS--HI-----NAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp EEEECSC--CC-----HHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGGG
T ss_pred EEEECCc--cc-----chhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcccc
Confidence 9987653 22 12345679999999999999999532 457899999999999864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.33 E-value=6.4e-05 Score=74.29 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=59.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc------------cccccccc--c----cC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF------------VGVLHDWC--E----AF 364 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl------------~g~~~~~~--~----~~ 364 (458)
..|||+|||.|+....+. ..... +|+=+|-+ .-|..+-+| |+ .+..+.-| + +|
T Consensus 50 ~~VLDlGCG~G~~l~~~~--~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYF--YGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CEEEETTCTTTTTHHHHH--HTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CeEEEEecCCcHhHHHHH--hcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 579999999999777665 23322 35555554 555555443 21 11111111 2 23
Q ss_pred CCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 365 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 365 ~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
+ +.+||+|-+..++-.. .+.-....+|-|+-|+|||||++++...
T Consensus 126 ~--~~~FD~V~~~~~lhy~---~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 Y--FGKFNIIDWQFAIHYS---FHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp C--SSCEEEEEEESCGGGT---CSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--CCCeeEEEECchHHHh---CCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 3799999876554321 1111346889999999999999998643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=71.86 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=53.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhh-hc-ccc--ccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI-LD-RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~-~~-rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||.|+|+..|.++ ..|.-+-+....++..+..+ .+ .|. +-+... ...+..-+.+||+|.++..++.-
T Consensus 84 ~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCS
T ss_pred CEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccccC
Confidence 68999999999999999844 33443333111112111110 01 111 111111 01111114689999987666410
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
....+.-....+|-++-|+|||||.|++.
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 00000000113678899999999999985
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=69.53 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=69.0
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cccc----ccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.+|+|+|||.|+++.+|.+. .... .|+-++-. ..+..+-++ |+-. ...|..+.|+. .+||+|-+
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~- 168 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVIL- 168 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEE-
T ss_pred CEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEE-
Confidence 57999999999999999854 1122 22333332 344443333 4422 34566776654 67999873
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhcc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLK 429 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~ 429 (458)
+--....++-++-|+|+|||.+++-. ..+...++.+.++...
T Consensus 169 ----------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 169 ----------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp ----------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred ----------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 22233568999999999999999864 4555666777766665
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=7.5e-05 Score=71.84 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=73.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-cc-------------------ccccccccccCCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GF-------------------VGVLHDWCEAFPT 366 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-gl-------------------~g~~~~~~~~~~~ 366 (458)
..|||+|||.|.++..|.+++. +|+-+|-+ .-+..+.++ ++ -.-..=.|-.+..
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~-----~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH-----TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CeEEEeCCCCcHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4799999999999999984433 45555544 334443322 11 0011111222222
Q ss_pred CC----CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec---------c---HHHHHHHHHHHhhccc
Q 012709 367 YP----RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---------T---ARLIESARALTTRLKW 430 (458)
Q Consensus 367 yp----~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d---------~---~~~~~~~~~~~~~~~w 430 (458)
.| .+||+|-+.++|..+. ......++-||-|+|||||.+++-. . .-.-++++.+... .|
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~----~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f 219 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAIN----PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KC 219 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TE
T ss_pred CCcccCCCEEEEEEhhhhhhCC----HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-Ce
Confidence 22 6899999888887662 2334568899999999999996421 0 0124777888776 48
Q ss_pred eEEEEee
Q 012709 431 DARVIEI 437 (458)
Q Consensus 431 ~~~~~~~ 437 (458)
++.....
T Consensus 220 ~v~~~~~ 226 (252)
T 2gb4_A 220 SMQCLEE 226 (252)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 7665543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00021 Score=64.59 Aligned_cols=134 Identities=18% Similarity=0.189 Sum_probs=64.8
Q ss_pred eEEeeccccchhhhhhhhccC-----------CCeEEEEeecCCCCCCchhhhccccccccccccc---------cCCCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-----------KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTY 367 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-----------~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~---------~~~~y 367 (458)
.+|||+|||.|.++.+|.++- ..|..+-+.|......+.++ . -.|..+ .++
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~------~~d~~~~~~~~~~~~~~~-- 94 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-C------PADVTDPRTSQRILEVLP-- 94 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-C------SCCTTSHHHHHHHHHHSG--
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-E------eccCCCHHHHHHHHHhcC--
Confidence 589999999999999997441 22343333331111111111 0 111111 111
Q ss_pred CCccccccccccccccc---cC--CCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEEeec---
Q 012709 368 PRTYDLVHAEGLLSLES---GH--RHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIEIE--- 438 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~---~~--~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~~~~--- 438 (458)
..+||+|-++..+...- .. ........++-|+-|+|||||.+++.+-. .....+...+...--++......
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~ 174 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASR 174 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC---
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccC
Confidence 25799998765433210 00 00001136788999999999999996321 12233434333332233333221
Q ss_pred cCCCccEEEEEe
Q 012709 439 SNSDERLLICQK 450 (458)
Q Consensus 439 ~~~~~~~~~~~k 450 (458)
..+.|..+++..
T Consensus 175 ~~~~e~~~v~~g 186 (196)
T 2nyu_A 175 KESSEVYFLATQ 186 (196)
T ss_dssp -----EEEEEEE
T ss_pred ccCceEEEEeee
Confidence 122377777664
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=8e-05 Score=73.15 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=59.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc-----------c--cc-ccccccc-----cCCCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----------F--VG-VLHDWCE-----AFPTY 367 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg-----------l--~g-~~~~~~~-----~~~~y 367 (458)
.+|||+|||.|.++..|.+ .+.. +|+-+|-. ..+..+-+|- . +- +..|..+ +|+.-
T Consensus 36 ~~VLDlGcG~G~~~~~l~~--~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKK--GRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp CEEEEETCTTTTTHHHHHH--TTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CEEEEECCCCcHHHHHHHh--cCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 5899999999999999983 3321 34444443 3343333321 1 11 1122211 23222
Q ss_pred CCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 368 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
+.+||+|-+..++...- .+.-....+|-++-|+|+|||++++...
T Consensus 112 ~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSF--ESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGG--GSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhcc--CCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 35899999877653210 0112345789999999999999998643
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00015 Score=72.68 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=57.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhh----hcccc---ccccccccccCCCCC-Ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYP-RTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~----~~rgl---~g~~~~~~~~~~~yp-~t~dl~h~~~~ 379 (458)
..|||+|||.|.++..+.+. +.- .|+-++....+..+ -+.|+ |-+++.=.+.++ +| .+||+|-+..+
T Consensus 66 ~~VLDiGcGtG~ls~~la~~--g~~--~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKA--GAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWM 140 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCC
T ss_pred CEEEEeeccCcHHHHHHHHc--CCC--EEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCc
Confidence 58999999999999888743 210 23333332223222 22343 223332223332 34 78999998764
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
...+ ...-.+..+|-++.|+|+|||.++
T Consensus 141 ~~~l---~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFL---LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTB---TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhc---cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3333 223345678999999999999998
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00039 Score=65.95 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=63.8
Q ss_pred eEEeeccccchhhhhhhhcc------CCCeEEEEeecCCCCCCchhhhc--ccccccccccccc--CCCCCC-ccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK------GKSVWVMNVVPTIGTNHLPMILD--RGFVGVLHDWCEA--FPTYPR-TYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~------~~~~~~m~v~~~~~~~~l~~~~~--rgl~g~~~~~~~~--~~~yp~-t~dl~h~ 376 (458)
.+|||+|||.|+.++.|.+. +..|..+-+.|. .+..+-. ..+-=+..|..+. ++..+. +||+|+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~----~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS----RCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT----TCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChH----HHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 58999999999999998743 223333332222 1221111 1111122333332 222222 6999986
Q ss_pred cccccccccCCCCCCcchhhhhhcc-cccCCceEEEeccHHH-----HHHHHHHHhhc--cceE
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDR-ILRPEGWVIIRDTARL-----IESARALTTRL--KWDA 432 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~dr-ilrp~g~~~~~d~~~~-----~~~~~~~~~~~--~w~~ 432 (458)
+.. + -....+|-|+-| +|||||++++.|.... -..+.++++.. +++.
T Consensus 159 d~~----~-----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA----H-----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS----C-----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCc----h-----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 543 1 145678999998 9999999999763211 13566666666 4554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.23 E-value=5.6e-05 Score=70.45 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=56.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-----ccccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-----gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|||+|||.|.++..|.+... +|+-++-. ..+..+-++ .+--+..|..+.++ -+.+||+|.++..+.
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIVD-----KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAP 145 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBS
T ss_pred CEEEEEcCCCCHHHHHHHHHcC-----EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHH
Confidence 5899999999999999984432 33334432 333333332 12112234444232 236899999887776
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
.+ .-++-|+|+|||.+++...
T Consensus 146 ~~------------~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 146 TL------------LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp SC------------CHHHHHTEEEEEEEEEEEC
T ss_pred HH------------HHHHHHHcCCCcEEEEEEc
Confidence 54 2378899999999998654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.6e-05 Score=73.12 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=57.5
Q ss_pred eEEeeccccchhhhhhhhccC--CCeEEEEeecCCCC-CCchhhhc----cccccccccccccCCCCC-Ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYP-RTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~--~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~~~~~~~~~yp-~t~dl~h~~~~ 379 (458)
-+|||+|||+|.++.+|.++- ..+ +|+-+|-+ .-|..+-+ .|+..-+.=.|.-+..+| ..||++-+..+
T Consensus 72 ~~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 72 TQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp CEEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred CEEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence 479999999999998887321 122 23333332 33433322 243221111122122222 35999988777
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..+. .-....+|=||-|+|||||.+|+.|
T Consensus 149 l~~~~----~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 149 LQFLE----PSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp GGGSC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeecC----chhHhHHHHHHHHHcCCCcEEEEEe
Confidence 66541 1123457899999999999999964
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00059 Score=65.06 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=56.3
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCC----CCCchhhhc----ccc---cccc-cc-cc-ccCCCCCCccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIG----TNHLPMILD----RGF---VGVL-HD-WC-EAFPTYPRTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~----~~~l~~~~~----rgl---~g~~-~~-~~-~~~~~yp~t~d 372 (458)
..|||+|||.|.++..|.++. ...-|.-|=+... +..+..+-+ .|+ +-+. .| .. +..+.-+.+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 589999999999999998431 1133333332221 124554332 233 1111 12 21 12221237899
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+|++.+++... .+ ...++-.+.++++|||++++.
T Consensus 125 ~v~~~~~l~~~---~~---~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 125 RVVLAHSLWYF---AS---ANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp EEEEESCGGGS---SC---HHHHHHHHHHHTTTCSEEEEE
T ss_pred EEEEccchhhC---CC---HHHHHHHHHHHhCCCCEEEEE
Confidence 99999998766 22 133444456666669999995
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=8.2e-05 Score=75.15 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=61.9
Q ss_pred CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc-cccccccccccccCCCCCCcccccccccccccc
Q 012709 305 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 305 ~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~-rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
...+.|+|+|||.|.++.+|.++...+-+..+ |-+..+..+-+ .++--+-+|..+++ |. ||++.+..++..+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~v~~~~~d~~~~~---~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINF---DLPQVIENAPPLSGIEHVGGDMFASV---PQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHTTCCCCTTEEEEECCTTTCC---CC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe---ChHHHHHhhhhcCCCEEEeCCcccCC---CC-CCEEEEecccccC
Confidence 35689999999999999999855434333211 11111111111 12322344555544 44 9999999998776
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. + -....+|-++=|+|||||.++|.
T Consensus 281 ~---d-~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 281 S---D-EKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp C---H-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C---H-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 1 12237899999999999999985
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=67.72 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=65.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccccc--c-ccccccc----CCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGFVG--V-LHDWCEA----FPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl~g--~-~~~~~~~----~~~yp~t~dl~h 375 (458)
..|||+|||.|.++.+|..+.... +|+-++-. ..+.. +-+.|+-. + -.|-.+- |+ +.+||+|+
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~--~~~~d~v~ 110 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP--DNSLRMVQ 110 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSC--TTCEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcC--CCChheEE
Confidence 579999999999999997543333 23333433 33333 22334421 1 2232222 33 47899998
Q ss_pred ccccccccccC---CCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhh
Q 012709 376 AEGLLSLESGH---RHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR 427 (458)
Q Consensus 376 ~~~~~~~~~~~---~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~ 427 (458)
+.... .|... ..|---..++-++-|+|||||.+++. |.....+.+.+++..
T Consensus 111 ~~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 111 LFFPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp EESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred EeCCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 54221 22100 11111225888999999999999986 445556666665543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=72.35 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=61.8
Q ss_pred CCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc-ccccccccccccCCCCCCccccccccccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
|...+.|+|+|||.|.++.+|.++-..+=+..+ |-+..+..+-++ ++-=+-+|.-++++ .. |++.+..++..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~-D~v~~~~vlh~ 273 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINF---DLPHVIQDAPAFSGVEHLGGDMFDGVP---KG-DAIFIKWICHD 273 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECHHHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEE---ehHHHHHhhhhcCCCEEEecCCCCCCC---CC-CEEEEechhhc
Confidence 456799999999999999999853333322211 111111111111 22223345545544 44 99999998887
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
|. + -....+|-++=|.|||||.++|-|
T Consensus 274 ~~---~-~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 274 WS---D-EHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp BC---H-HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CC---H-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 72 1 123468999999999999999854
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00038 Score=67.97 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=54.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC---CCchh-hhccccccc--cccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT---NHLPM-ILDRGFVGV--LHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~---~~l~~-~~~rgl~g~--~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
..|||+|||.|+|+..|.++ ..|.-+-+.|.-.. +.+.. .+.-++.-+ -.|- +.++ +.+||+|-++..+.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~-~~l~--~~~fD~Vvsd~~~~ 159 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDV-TKME--PFQADTVLCDIGES 159 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCG-GGCC--CCCCSEEEECCCCC
T ss_pred CEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcH-hhCC--CCCcCEEEECCCcC
Confidence 68999999999999999854 45665555552100 10000 000011111 1222 2244 57899998764421
Q ss_pred ccccCCCCCCc-----chhhhhhcccccCCc--eEEEe
Q 012709 382 LESGHRHRCST-----LDIFTEIDRILRPEG--WVIIR 412 (458)
Q Consensus 382 ~~~~~~~~c~~-----~~~~~e~drilrp~g--~~~~~ 412 (458)
. ..-.+ ..+|-++.|+|+||| .|++.
T Consensus 160 ~-----~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 160 N-----PTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp C-----SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred C-----CchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 1 00000 126778999999999 99884
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00072 Score=68.87 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-------------CCeEEEeeccCCC----CCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-------------LPAMIGSFASKQL----PYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-------------~~~~~~~~d~~~L----pfp~ 106 (458)
++++||=||-|.|...+.+++.. ..+++.+|+++..++.|++.- .++.+...|+... .-..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~--~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLK--PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTC--CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcC--CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 45799999999999999999854 368999999999999998852 1245666664321 1124
Q ss_pred CCeeEEEeccccccc-ccc---------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 107 LSFDMLHCARCGVDW-DQK---------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~-~~~---------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.||+|+.-. .-.. ..+ ...+++.+.++|+|||.++....
T Consensus 283 ~~yDvIIvDl-~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 283 REFDYVINDL-TAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp CCEEEEEEEC-CSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEECC-CCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 6799999642 1111 111 13578889999999999998653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=3.8e-05 Score=72.16 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc---cc-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl---~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|+++.+|..... .|+-+|-. ..+..+- ..|+ +- +..|..+. + -+.+||+|.++.
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~ 152 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGM-----RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL-A-SFLKADVVFLSP 152 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-G-GGCCCSEEEECC
T ss_pred CEEEECccccCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh-c-ccCCCCEEEECC
Confidence 5799999999999999984432 33434432 3333222 2233 11 12233332 2 246899999888
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.|.... .....+.|+-|+|+|||++++..
T Consensus 153 ~~~~~~------~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 153 PWGGPD------YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCSSGG------GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CcCCcc------hhhhHHHHHHhhcCCcceeHHHH
Confidence 776542 11225779999999999988754
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0003 Score=65.87 Aligned_cols=134 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred eEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcc-cccccccccccc--CCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEA--FPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~--~~~yp~t~dl~h~~~~~~ 381 (458)
..|||+|||.|.|+..|.+. ...|..+-+.|..-...+..+-.+ ++--+..|..+. ++..+.+||+|.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-- 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-- 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC--
Confidence 48999999999999999743 122333322221000012222221 222223333331 2223468999986332
Q ss_pred ccccCCCCCC-cchhhhhhcccccCCceEEEeccHH----------HHHHHHHHHhhccceEEE-EeeccCCC-ccEEEE
Q 012709 382 LESGHRHRCS-TLDIFTEIDRILRPEGWVIIRDTAR----------LIESARALTTRLKWDARV-IEIESNSD-ERLLIC 448 (458)
Q Consensus 382 ~~~~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~----------~~~~~~~~~~~~~w~~~~-~~~~~~~~-~~~~~~ 448 (458)
... ...++.++-|+|+|||.+++.-... .+.+..+++..-.|+..- ...+.-+. .-++++
T Consensus 157 -------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~ 229 (233)
T 2ipx_A 157 -------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVG 229 (233)
T ss_dssp -------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEE
T ss_pred -------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEE
Confidence 111 1234667999999999999953321 122224556666777544 33333322 445555
Q ss_pred Ee
Q 012709 449 QK 450 (458)
Q Consensus 449 ~k 450 (458)
+|
T Consensus 230 ~~ 231 (233)
T 2ipx_A 230 VY 231 (233)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00047 Score=65.40 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=63.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----------ccc--ccc-cccccccCC--CCCCcc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----------RGF--VGV-LHDWCEAFP--TYPRTY 371 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----------rgl--~g~-~~~~~~~~~--~yp~t~ 371 (458)
..|||+|||.|.|+.+|..+.... +|+-++-. .-+..+-+ .|+ |-+ ..|..+.++ .-+.+|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~---~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDT---LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTS---EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 579999999999999998442222 23333322 22222111 122 111 122222122 114689
Q ss_pred ccccccccccccc---cCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhc
Q 012709 372 DLVHAEGLLSLES---GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL 428 (458)
Q Consensus 372 dl~h~~~~~~~~~---~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~ 428 (458)
|.|..... ..+. ..+.|.....+|-|+-|+|+|||.+++. |.....+.+.+.+..-
T Consensus 125 D~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~ 184 (235)
T 3ckk_A 125 TKMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH 184 (235)
T ss_dssp EEEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred eEEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 99864211 1120 0123444467899999999999999985 6666666666665544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=70.72 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=58.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhh----cccc---ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~----~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||.|.++..+.. .+.- .|+-++....+..+- +.|+ |-+++.=.+.++ .|..||+|-+..++
T Consensus 52 ~~VLDiGcGtG~ls~~la~--~g~~--~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQ--AGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LPEQVDIIISEPMG 126 (348)
T ss_dssp CEEEEETCTTSHHHHHHHH--TTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEEECCCB
T ss_pred CEEEEcCCCccHHHHHHHh--CCCC--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCC-CCCceeEEEEeCch
Confidence 5899999999999988873 3320 222233322232222 2244 223322222222 35789999988887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
..+ . .-.+...+.++-|+|+|||.+++
T Consensus 127 ~~~---~-~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 127 YML---F-NERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp TTB---T-TTSHHHHHHHGGGGEEEEEEEES
T ss_pred hcC---C-hHHHHHHHHHHHhhcCCCeEEEE
Confidence 765 1 22355678899999999999985
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=8.8e-05 Score=69.98 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=52.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCc-hhh-------hccccccc--cccccccCCC-CCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL-PMI-------LDRGFVGV--LHDWCEAFPT-YPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l-~~~-------~~rgl~g~--~~~~~~~~~~-yp~t~dl~h 375 (458)
..|||+|||.|.++..|..+.... +|+-+|.+ ..+ .++ .++|+-.+ ...=.+.++. +.-.+|.++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 689999999999999987433332 34444443 333 221 23454221 1111222321 113444444
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
....+.... ...+-....+|-|+-|+|||||.+++
T Consensus 103 ~~~~~~~~~-~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTLL-EYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHHH-HHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHHh-hhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 322111000 00112234678999999999999998
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00011 Score=67.42 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=55.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--cc-ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.+++.|.+... +|+-++-. ..+..+-++ |+ +- ...|..+.++. ..+||+|.++..
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 152 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLVQ-----HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA-RAPFDAIIVTAA 152 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEESSB
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-CCCccEEEEccc
Confidence 5799999999999999985433 33333332 333333322 32 11 22333332221 468999998877
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..+ . =++-|+|+|||.+++.-
T Consensus 153 ~~~~---~---------~~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 153 PPEI---P---------TALMTQLDEGGILVLPV 174 (210)
T ss_dssp CSSC---C---------THHHHTEEEEEEEEEEE
T ss_pred hhhh---h---------HHHHHhcccCcEEEEEE
Confidence 7655 2 26789999999999854
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00016 Score=68.04 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=72.3
Q ss_pred EEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhh----hccccc----ccc-ccccccCCCC-CCccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMI----LDRGFV----GVL-HDWCEAFPTY-PRTYDLVHA 376 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~----~~rgl~----g~~-~~~~~~~~~y-p~t~dl~h~ 376 (458)
+|||+|||.|.++.+|.+. .... .|+-++-. ..+.++ -+.|+- -++ .|-.+..+.. +.+||+|..
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 8999999999999888742 1111 12222322 222222 112331 111 1222223333 478999975
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEecc------------HHHHHHHHHHHhhccceEEEEeeccCCCcc
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARALTTRLKWDARVIEIESNSDER 444 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 444 (458)
+.-.. ....++-++-|+|||||++++.|- ......++++.+.++++-++.-+----.++
T Consensus 136 d~~~~---------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG 206 (221)
T 3dr5_A 136 QVSPM---------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAG 206 (221)
T ss_dssp CCCTT---------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTC
T ss_pred cCcHH---------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccch
Confidence 54322 234567788899999999998432 122345666666666652221111011278
Q ss_pred EEEEEecc
Q 012709 445 LLICQKPF 452 (458)
Q Consensus 445 ~~~~~k~~ 452 (458)
++|++|.+
T Consensus 207 l~~~~~~~ 214 (221)
T 3dr5_A 207 LTVVTKAL 214 (221)
T ss_dssp EEEEEECC
T ss_pred HHHHHHHH
Confidence 99999876
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.07 E-value=6.7e-05 Score=67.99 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=58.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccc-cccccccCCCC-CCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGV-LHDWCEAFPTY-PRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~-~~~~~~~~~~y-p~t~dl~h~~~ 378 (458)
.+|||+|||.|.++.++.. .+.- .|+-+|-. ..+..+-+ .|+ +-+ ..|..+..+.+ +.+||+|-++.
T Consensus 46 ~~vLDlgcG~G~~~~~~~~--~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALS--RGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CEEEEETCTTCHHHHHHHH--TTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CEEEEeCCCcCHHHHHHHH--CCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 5799999999999997763 3221 23333332 33333222 233 112 22222221112 47899998776
Q ss_pred cccccccCCCCCCcchhhhhhcc--cccCCceEEEecc
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDR--ILRPEGWVIIRDT 414 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~dr--ilrp~g~~~~~d~ 414 (458)
.|... .-.+..++-++-| +|+|||.+++...
T Consensus 122 p~~~~-----~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 122 PYNVD-----SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CTTSC-----HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCCcc-----hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 65431 1245678888988 9999999999654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=63.26 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=68.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----c---ccc---cccc-ccccccCC-----CC-CC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----D---RGF---VGVL-HDWCEAFP-----TY-PR 369 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~---rgl---~g~~-~~~~~~~~-----~y-p~ 369 (458)
.+|||+|||.|.++..|..+... .+|+-++-. ..+..+- . .|+ +-++ .|..+..+ .+ +.
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~~---~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLEK---AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCTT---EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CEEEEeCChHhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 58999999999999888743222 133333332 2222211 1 233 2222 22222211 12 46
Q ss_pred ccccccccccccccc------------cCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccce
Q 012709 370 TYDLVHAEGLLSLES------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD 431 (458)
Q Consensus 370 t~dl~h~~~~~~~~~------------~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~ 431 (458)
+||+|-++--|.... .....+.+..++-++-|+|+|||.+++--..+.+.++.+.++.- |.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~ 187 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FG 187 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CC
Confidence 899999874432210 00224667889999999999999998865555666677776663 65
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.06 E-value=4.2e-05 Score=68.28 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----ccccc----cccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFV----GVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl~----g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++.+|.. .+. -+|+-+|-. ..+..+- ..|+- =+..|+.+.++..+.+||+|.++.
T Consensus 33 ~~vLDlGcG~G~~~~~l~~--~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVS--RGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CEEEEETCTTCHHHHHHHH--TTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHH--cCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 5899999999999999883 332 134444432 3333322 22331 123344443344456799999876
Q ss_pred cccccccCCCCCCcchhhhhhc--ccccCCceEEEeccH
Q 012709 379 LLSLESGHRHRCSTLDIFTEID--RILRPEGWVIIRDTA 415 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~d--rilrp~g~~~~~d~~ 415 (458)
.|... ....++-++- |+|+|||.+++....
T Consensus 109 ~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAKE-------TIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSHHH-------HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCcc-------hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 65311 1234455554 999999999996443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=64.25 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=66.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh--------hcccc--ccccccccccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI--------LDRGF--VGVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~--------~~rgl--~g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
..|||+|||.|.++..|.++.... +|+-+|-. ..|..+ -.+|+ +-..+.=.+.++.-+.+ |.+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~- 103 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH- 103 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE-
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE-
Confidence 679999999999999998542122 33333433 333321 13443 11222112224432334 6665
Q ss_pred cccccccccC-CCCCCcchhhhhhcccccCCceEEEec------------------c-HHHHHHHHHHHhhccceEEEEe
Q 012709 377 EGLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIRD------------------T-ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 377 ~~~~~~~~~~-~~~c~~~~~~~e~drilrp~g~~~~~d------------------~-~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
-+|+..... .+--+...+|-|+-|+|||||.+++.- . ....+.+++++..-.|++.-..
T Consensus 104 -~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 104 -VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp -EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred -EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence 122100000 000112578999999999999999842 1 1223447778888888765543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00064 Score=63.17 Aligned_cols=130 Identities=16% Similarity=0.283 Sum_probs=68.0
Q ss_pred eEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhh----c-ccccccccccccc--CCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMIL----D-RGFVGVLHDWCEA--FPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~----~-rgl~g~~~~~~~~--~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++..|... ...|..+-+.|. -+..+. + .++--+..|..+. +...+.+||+|-++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR----VLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH----HHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHH----HHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 48999999999999988743 123443333221 111110 1 1221122233331 12235689998854
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------HH-HHHHHHHHhhccceEEE-EeeccCC-Ccc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------RL-IESARALTTRLKWDARV-IEIESNS-DER 444 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------~~-~~~~~~~~~~~~w~~~~-~~~~~~~-~~~ 444 (458)
.. . .-....++-++-|+|+|||++++.-.. .+ -++++++... ++..- .+..... +.-
T Consensus 151 ~~-~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--f~~~~~~~~~~~~~~~~ 220 (227)
T 1g8a_A 151 VA-Q-------PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY--FEVIERLNLEPYEKDHA 220 (227)
T ss_dssp CC-S-------TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT--SEEEEEEECTTTSSSEE
T ss_pred CC-C-------HhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh--ceeeeEeccCcccCCCE
Confidence 32 0 111224588999999999999983111 11 2456666333 76433 3332222 244
Q ss_pred EEEEEec
Q 012709 445 LLICQKP 451 (458)
Q Consensus 445 ~~~~~k~ 451 (458)
+++++|+
T Consensus 221 ~~~~~~~ 227 (227)
T 1g8a_A 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6777763
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00021 Score=67.26 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=70.3
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc----ccccc---c-cccccccCCCCC-----Cccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGFVG---V-LHDWCEAFPTYP-----RTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~-~~~~~~~~~~yp-----~t~d 372 (458)
++|||+|||.|.++.+|...-. .. .|+-++.. ..+.++-+ .|+-. + ..|..+.++..| .+||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 6899999999999999883211 11 22222322 23333222 24311 1 122222222221 6799
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc------------HHHHHHHHHHH----hhccceEEEEe
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARALT----TRLKWDARVIE 436 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~------------~~~~~~~~~~~----~~~~w~~~~~~ 436 (458)
+|.++.... ....++-++-|+|||||++++.+- ......++++. ..-++++.+..
T Consensus 151 ~V~~d~~~~---------~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 221 (232)
T 3cbg_A 151 LIFIDADKR---------NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIP 221 (232)
T ss_dssp EEEECSCGG---------GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred EEEECCCHH---------HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEE
Confidence 998554322 234578888899999999998532 12233444443 33456665553
Q ss_pred eccCCCccEEEEEec
Q 012709 437 IESNSDERLLICQKP 451 (458)
Q Consensus 437 ~~~~~~~~~~~~~k~ 451 (458)
. .+++.+++|.
T Consensus 222 ~----~dG~~~~~~~ 232 (232)
T 3cbg_A 222 L----GDGMTLALKK 232 (232)
T ss_dssp S----BTCEEEEEEC
T ss_pred c----CCeEEEEEeC
Confidence 2 2568888874
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00067 Score=63.95 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=64.8
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc-----cc--c-ccccccccc-CCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR-----GF--V-GVLHDWCEA-FPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r-----gl--~-g~~~~~~~~-~~~yp~t~dl~h~ 376 (458)
.+|||+|||.|.++.+|... .... +|+-++.. ..+..+-++ |. + -...|..+. |+ +.+||+|-+
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~~~D~v~~ 172 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE--EAAYDGVAL 172 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC--TTCEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC--CCCcCEEEE
Confidence 58999999999999999843 1111 23333332 334333332 41 1 122344443 33 258999874
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccce
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWD 431 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~ 431 (458)
+ --....++-++-|+|+|||.+++-... ..+.++.+.++...|.
T Consensus 173 ~-----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 173 D-----------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp E-----------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred C-----------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 2 122346799999999999999986544 3455555555555554
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=66.63 Aligned_cols=128 Identities=13% Similarity=0.208 Sum_probs=71.6
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhcc----cccc---c-cc----------------ccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILDR----GFVG---V-LH----------------DWC 361 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~r----gl~g---~-~~----------------~~~ 361 (458)
.+|||+|||.|.++..|...-. .. +|+-++-. ..+..+-++ |+-. + .. .|-
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 5899999999999999874311 11 22222322 222222221 3211 1 11 122
Q ss_pred ccCCCCC-CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc------------HHHHHHHHH----H
Q 012709 362 EAFPTYP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARA----L 424 (458)
Q Consensus 362 ~~~~~yp-~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~------------~~~~~~~~~----~ 424 (458)
..|+. + .+||+|.++.... ....++-++-|+|||||.+++.+- ......+++ +
T Consensus 139 ~~f~~-~~~~fD~I~~~~~~~---------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T 2hnk_A 139 SDFAF-GPSSIDLFFLDADKE---------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELV 208 (239)
T ss_dssp TTTCC-STTCEEEEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHH
T ss_pred ccccC-CCCCcCEEEEeCCHH---------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHH
Confidence 22332 2 6799998654322 233678889999999999999651 122233333 3
Q ss_pred HhhccceEEEEeeccCCCccEEEEEecc
Q 012709 425 TTRLKWDARVIEIESNSDERLLICQKPF 452 (458)
Q Consensus 425 ~~~~~w~~~~~~~~~~~~~~~~~~~k~~ 452 (458)
...-++++...... +++.+++|.+
T Consensus 209 ~~~~~~~~~~~p~~----~g~~~~~~~~ 232 (239)
T 2hnk_A 209 YNDSLVDVSLVPIA----DGVSLVRKRL 232 (239)
T ss_dssp HHCTTEEEEEECST----TCEEEEEECC
T ss_pred hhCCCeEEEEEEcC----CceEeeeehh
Confidence 44455666665432 5688888875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00027 Score=71.39 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=62.1
Q ss_pred CCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc-ccccccccccccCCCCCCccccccccccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
|...+.|+|+|||.|.++.+|.++-..+=+.. .|-+..+..+-++ ++-=+-+|..+++| .. |++.+..++-.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~v~~~~~D~~~~~p---~~-D~v~~~~vlh~ 271 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVN---FDLPHVISEAPQFPGVTHVGGDMFKEVP---SG-DTILMKWILHD 271 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECHHHHTTCCCCTTEEEEECCTTTCCC---CC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEE---ecCHHHHHhhhhcCCeEEEeCCcCCCCC---CC-CEEEehHHhcc
Confidence 44678999999999999999985323322221 1111111111111 22223355555554 44 99999998887
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
|. + -....+|-++=|.|||||+++|-|
T Consensus 272 ~~---d-~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 272 WS---D-QHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp SC---H-HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CC---H-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 72 1 134568999999999999999854
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00056 Score=64.08 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=65.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---c-cccccccccC-CCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---V-GVLHDWCEAF-PTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~-g~~~~~~~~~-~~yp~t~dl~h~~ 377 (458)
.+|+|+|||.|.++.+|.... .+|+-++-. ..+..+-++ |+ + -+..|..+.+ + +.+||+|-++
T Consensus 93 ~~vldiG~G~G~~~~~l~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~~ 165 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEVA-----GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFVD 165 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHHS-----SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEEC
T ss_pred CEEEEeCCCccHHHHHHHHhC-----CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEEC
Confidence 479999999999999998432 244555543 444444333 33 1 1223444443 2 3579998731
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRL 428 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~ 428 (458)
--....++-++-|+|||||.+++-.. .+.+.++...+...
T Consensus 166 -----------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 166 -----------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -----------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -----------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 22345678899999999999998655 44566666665554
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00021 Score=67.65 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=54.5
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhh----hccccc---cc-cccccccCCCC------CCc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMI----LDRGFV---GV-LHDWCEAFPTY------PRT 370 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~----~~rgl~---g~-~~~~~~~~~~y------p~t 370 (458)
-++|||+|||.|..+..|.+.-. .. .|+-++-. ..+.++ -+.|+- -+ ..|..+.++.. +.+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 36899999999999988874311 11 22222322 223322 223441 11 12333322222 468
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
||+|..+.--. ....++-++-|+|||||.+++.+
T Consensus 148 fD~I~~d~~~~---------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDADKP---------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEEECSCGG---------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCEEEECCchH---------HHHHHHHHHHHhcCCCeEEEEec
Confidence 99998553211 23456778889999999999864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00093 Score=64.40 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=66.3
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc-----cc--c-cccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR-----GF--V-GVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r-----gl--~-g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|+++..|.+. .... .|+-++-. ..+..+-++ |+ + -...|..++++ +.+||+|-++
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~~ 186 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIAD 186 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEEC
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEEc
Confidence 58999999999999999843 1111 23333332 333333332 42 1 12235555444 2689998741
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccHH-HHHHHHHHHhhccce
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWD 431 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~-~~~~~~~~~~~~~w~ 431 (458)
--....+|-++-|+|+|||.+++.+... ..+++.+.+....|.
T Consensus 187 -----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 187 -----------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 230 (275)
T ss_dssp -----------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred -----------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 1123467899999999999999876543 556666666665565
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00071 Score=68.87 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=57.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccc---c---ccccccccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV---G---VLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~---g---~~~~~~~~~~~yp~t~dl~h~ 376 (458)
.+|+|+|||+|.|+.+|..+.... .|+-+|.. ..+..+ -..|+- - ...|..+.++ +.+||+|-+
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~ 298 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLC 298 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEE
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEE
Confidence 679999999999999998542122 22333332 222221 122321 1 2234344343 368999998
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+..|..... ..+-....++-++-|+|+|||.+++-
T Consensus 299 nppfh~~~~-~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 299 NPPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp CCCC--------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccCcc-cCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 877753210 11222336788999999999999984
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.89 E-value=9.8e-05 Score=64.93 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=55.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-ccc-cccccccCCCC---CCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VGV-LHDWCEAFPTY---PRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g~-~~~~~~~~~~y---p~t~dl~h~~ 377 (458)
.+|+|+|||.|.++.+|...... |+-+|-. ..+..+-+ .|+ +-+ ..|+.+..+.. +.+||+|.++
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~~-----v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGWE-----AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCE-----EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeCCCcCHHHHHHHHCCCe-----EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 57999999999999999854332 4444443 33333222 232 111 12333322221 1379999988
Q ss_pred ccccccccCCCCCCcchhhhhhc--ccccCCceEEEecc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEID--RILRPEGWVIIRDT 414 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~d--rilrp~g~~~~~d~ 414 (458)
..|. - ....++-++- |+|+|||.+++...
T Consensus 118 ~~~~-~-------~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 118 PPYA-M-------DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCTT-S-------CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCc-h-------hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 7664 1 1234455555 99999999998643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00026 Score=70.80 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=61.5
Q ss_pred CceeEEeeccccchhhhhhhhccCCC--eEEEEeecCCCCCCchhhhc-cccccccccccccCCCCCCcccccccccccc
Q 012709 305 NMVRNVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 305 ~~~r~~~d~~~~~g~faa~l~~~~~~--~~~m~v~~~~~~~~l~~~~~-rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
....+|+|+|||.|.++.+|.++-.. +.++-+ | ..+..+-+ .++-=+-+|..+++ |. ||++.+..++.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~---p~-~D~v~~~~~lh 257 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFTSI---PN-ADAVLLKYILH 257 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTTCC---CC-CSEEEEESCGG
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccCCC---CC-ccEEEeehhhc
Confidence 35689999999999999999854222 333332 2 11111111 12222334554544 43 99999999988
Q ss_pred ccccCCCCCCcchhhhhhcccccC---CceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRP---EGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp---~g~~~~~d 413 (458)
.+. +. ....+|-++-|+||| ||.++|.|
T Consensus 258 ~~~---d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 258 NWT---DK-DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GSC---HH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCC---HH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 772 21 223789999999999 99999853
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00055 Score=65.22 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=51.8
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCCCCchhhhcc-ccccccccccccC--CCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~--~~yp~t~dl~h~~~~~~ 381 (458)
-.|||+|||.|++++.|.+. . -.|.-+-+-|.--..-+..+-+| .+.-+..|-..+. ...+.+||+|.++..+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 47999999999999888632 1 13443333221100011222222 2333344443321 1224579998755322
Q ss_pred ccccCCCCCCcchhhh-hhcccccCCceEEEe
Q 012709 382 LESGHRHRCSTLDIFT-EIDRILRPEGWVIIR 412 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~-e~drilrp~g~~~~~ 412 (458)
.....+|+ .+.|.|||||.+++.
T Consensus 157 --------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 --------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp --------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 23334555 456699999999974
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=62.62 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=55.7
Q ss_pred EEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhccc-ccccccccccc--CCCCCCccccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEA--FPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rg-l~g~~~~~~~~--~~~yp~t~dl~h~~~~~~~ 382 (458)
.|||+|||.|.|+.+|.+. +-.|..+.+.|.--......+-+++ +.-+..|-+.+ .+.-+.++|+|.++-.+
T Consensus 80 ~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~-- 157 (233)
T 4df3_A 80 RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQ-- 157 (233)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCC--
T ss_pred EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccC--
Confidence 8999999999999999732 1235555444332111122233344 33344444433 12223567876532111
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.=....++-|+-|+|+|||.++|.
T Consensus 158 ------~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 158 ------PEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp ------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------ChhHHHHHHHHHHhccCCCEEEEE
Confidence 112345788999999999999984
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00032 Score=65.10 Aligned_cols=90 Identities=16% Similarity=0.191 Sum_probs=52.5
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----c--------cccccccccccCCCCCCcccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----G--------FVGVLHDWCEAFPTYPRTYDL 373 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----g--------l~g~~~~~~~~~~~yp~t~dl 373 (458)
.+|||+|||.|.+++.|.+. +... +|+-++-. ..+..+-++ | +--+..|..+.+. -+.+||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence 48999999999999988743 1111 22333322 223222211 1 1112234433322 1357999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
|+++..+.. ++-++-|+|+|||.+++.-
T Consensus 155 i~~~~~~~~------------~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAPV------------VPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBSS------------CCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchHH------------HHHHHHHhcCCCcEEEEEE
Confidence 996665533 3568889999999999853
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00019 Score=66.74 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=70.1
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc----ccc---cccc-ccccccCCCCC-----Cccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD----RGF---VGVL-HDWCEAFPTYP-----RTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~~-~~~~~~~~~yp-----~t~d 372 (458)
++|+|+|||.|.++.+|.+.-. .. .|+-++.. ..+..+-+ .|+ +-++ .|..+.++..+ .+||
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 6899999999999999983211 11 22223322 22333222 243 1111 12222212111 5799
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc------------HHHHHHHHHH----HhhccceEEEEe
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARAL----TTRLKWDARVIE 436 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~------------~~~~~~~~~~----~~~~~w~~~~~~ 436 (458)
+|.++.. ......++-++=|+|||||.+++.+. ......++++ ...=++++.+..
T Consensus 148 ~v~~d~~---------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp 218 (229)
T 2avd_A 148 VAVVDAD---------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP 218 (229)
T ss_dssp EEEECSC---------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred EEEECCC---------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEe
Confidence 9985432 22334678888899999999999432 2223334444 333455555553
Q ss_pred eccCCCccEEEEEec
Q 012709 437 IESNSDERLLICQKP 451 (458)
Q Consensus 437 ~~~~~~~~~~~~~k~ 451 (458)
. .+++.|++|.
T Consensus 219 ~----~dGl~~~~k~ 229 (229)
T 2avd_A 219 L----GDGLTLAFKI 229 (229)
T ss_dssp S----TTCEEEEEEC
T ss_pred c----CCceEEEEEC
Confidence 2 2678888873
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00069 Score=66.16 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=78.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cc-ccccccccCCCCCCcc---cccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTY---DLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g-~~~~~~~~~~~yp~t~---dl~h 375 (458)
.+|+|+|||.|.++.+|... +-+ +|+-+|-. ..+.++-+ .|+ +- +..||.++++ .+| |+|-
T Consensus 125 ~~vLDlG~GsG~~~~~la~~--~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~Iv 197 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKF--SDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMIL 197 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHH--SSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEE
T ss_pred CEEEEEeCchhHHHHHHHHC--CCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEE
Confidence 47999999999999999843 222 34444433 44444332 244 22 2346666543 578 9998
Q ss_pred cccccccccc----C---------CCCCCcchhhhhhc-ccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccCC
Q 012709 376 AEGLLSLESG----H---------RHRCSTLDIFTEID-RILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 441 (458)
Q Consensus 376 ~~~~~~~~~~----~---------~~~c~~~~~~~e~d-rilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 441 (458)
++--+..... . ...++-..++-++= |.|+|||++++.-..+--+.+.++++.. .++. +-.+
T Consensus 198 snPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~----~~~~-D~~g 272 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT----VFLK-DSAG 272 (284)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC----EEEE-CTTS
T ss_pred EcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC----Ceec-ccCC
Confidence 7622221100 0 01122236778888 9999999999975555566777776665 3322 2334
Q ss_pred CccEEEEEec
Q 012709 442 DERLLICQKP 451 (458)
Q Consensus 442 ~~~~~~~~k~ 451 (458)
.++++++.++
T Consensus 273 ~~R~~~~~~k 282 (284)
T 1nv8_A 273 KYRFLLLNRR 282 (284)
T ss_dssp SEEEEEEECC
T ss_pred CceEEEEEEc
Confidence 5888888765
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00028 Score=66.01 Aligned_cols=94 Identities=11% Similarity=0.184 Sum_probs=58.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cc-ccccccccCCCC--CCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTY--PRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g-~~~~~~~~~~~y--p~t~dl~h~ 376 (458)
.+|+|+|||.|.++..|.+.-.. -+|+-++.. ..+..+-++ |+ |- +..|..+..+.. +.+||+|-+
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPE---ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTT---CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 58999999999999998743111 133334433 344443333 43 21 223333322222 468999986
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+...+ ....++-++-|+|||||.+++.|
T Consensus 133 ~~~~~---------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKG---------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGS---------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHH---------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 54433 33567889999999999999964
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00036 Score=66.59 Aligned_cols=95 Identities=9% Similarity=0.072 Sum_probs=54.5
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhh----cccc---cccc-ccccccCCCC------CCc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMIL----DRGF---VGVL-HDWCEAFPTY------PRT 370 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~----~rgl---~g~~-~~~~~~~~~y------p~t 370 (458)
-++|||+|||.|.++..|.+.-. .. .|+-++.. ..+.++- +.|+ |-++ .|..+..+.. +.+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 36899999999999988874311 11 22333322 2222221 2344 2122 2222222222 468
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
||+|.++.-. -....++-++-|+|||||.+++.+
T Consensus 157 fD~V~~d~~~---------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDADK---------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSCS---------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCch---------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999755321 124567778889999999999854
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.014 Score=57.35 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH---HHHHcCCC-eEEEee-ccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLERGLP-AMIGSF-ASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~---~A~er~~~-~~~~~~-d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+||++|.|+.+.+.+.. ...|.|+|+-..--+ ..++.+.+ +.+... |...++- ..+|+|+|--.
T Consensus 94 ~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig- 169 (321)
T 3lkz_A 94 PVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG- 169 (321)
T ss_dssp CCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC-
T ss_pred CCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc-
Confidence 345999999999999998877642 448999999765110 00011111 445444 5555542 66999998633
Q ss_pred ccccccHH-------HHHHHHHhcccCC-cEEEEEeCCC
Q 012709 119 VDWDQKDG-------ILLLEVDRVLKPG-GYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~-------~~L~ei~RvLkPG-G~liis~~~~ 149 (458)
.-..++. ++|.-+.+.|++| |-|++-...+
T Consensus 170 -eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 170 -ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp -CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred -cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 2222221 3566667889999 9999987755
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0017 Score=62.54 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=67.7
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cc----ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl----~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++.+|... .... +|+-++.. ..+..+-++ |+ --...|..+.++. .+||+|-++
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~V~~~ 188 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALFLD 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEEEC
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC--CccCEEEEC
Confidence 47999999999999998743 1122 34444432 444444332 43 1223455555432 579998742
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccce
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWD 431 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~ 431 (458)
--....++-++-|+|+|||.+++-+. ...+.++.+.+....|.
T Consensus 189 -----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 189 -----------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp -----------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred -----------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 11224678889999999999998765 34566666666666665
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00047 Score=64.24 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=52.5
Q ss_pred eEEeeccccchhhhhhhhcc-C-------CCeEEEEeecCCCCCCchhhhcc----c--------cccccccccccCCCC
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G-------KSVWVMNVVPTIGTNHLPMILDR----G--------FVGVLHDWCEAFPTY 367 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~-------~~~~~m~v~~~~~~~~l~~~~~r----g--------l~g~~~~~~~~~~~y 367 (458)
..|||+|||.|.+++.|.+. . ..|..+-+.| ..+..+-++ | +--+..|..+.++.
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 160 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA----ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP- 160 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCH----HHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-
Confidence 47999999999999998742 1 1233222111 222222211 1 11122344443332
Q ss_pred CCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 368 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
..+||+|++...+.. ++-++-|+|+|||.+++.-
T Consensus 161 ~~~fD~I~~~~~~~~------------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 NAPYNAIHVGAAAPD------------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp GCSEEEEEECSCBSS------------CCHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEECCchHH------------HHHHHHHHhcCCCEEEEEE
Confidence 258999996665543 3568889999999999853
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0013 Score=63.57 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=63.9
Q ss_pred eEEeeccccchhhhhhhhccCC--CeEEEEeecCCCCCCchhhh----cccc---ccccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~--~~~~m~v~~~~~~~~l~~~~----~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|+|+|||.|+|+..|..... .|..+-+.| .-+..+- ..|+ .-+..|..+ ++. +.+||+|-.+.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~-~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRD-VEL-KDVADRVIMGY 194 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGG-CCC-TTCEEEEEECC
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHH-cCc-cCCceEEEECC
Confidence 5899999999999998874322 333332222 1121111 1222 111222222 222 56899986443
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccHH------HH-HHHHHHHhhccceEEEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR------LI-ESARALTTRLKWDARVI 435 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~------~~-~~~~~~~~~~~w~~~~~ 435 (458)
.. ....++-++-|.|+|||.+++.+... .. +.++.+.+.+.+++...
T Consensus 195 p~----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (272)
T 3a27_A 195 VH----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDY 248 (272)
T ss_dssp CS----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred cc----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeEEe
Confidence 22 45668889999999999999864432 33 44555555555555433
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00045 Score=65.86 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=53.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-c-cccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-V-GVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~-g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.++..|.+.-... +|+-++-. ..+..+-+++- + =+..|.. .++.-+.+||+|.+...
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESC-----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCC-----
Confidence 579999999999999998431122 23333332 44444444431 1 1112221 23322368999985432
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
...+-|+-|+|||||.+++.+
T Consensus 158 --------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 --------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp --------CCCHHHHHHHEEEEEEEEEEE
T ss_pred --------hhhHHHHHHhcCCCcEEEEEE
Confidence 225889999999999999854
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00033 Score=65.08 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=52.2
Q ss_pred eEEeeccccchhhhhhhhccCC----CeEEEEeecCCCC-CCchhhhcc----cc-------cc-ccccccccCC---CC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK----SVWVMNVVPTIGT-NHLPMILDR----GF-------VG-VLHDWCEAFP---TY 367 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~----~~~~m~v~~~~~~-~~l~~~~~r----gl-------~g-~~~~~~~~~~---~y 367 (458)
.+|||+|||.|.+++.|.+.-. +-. +|+-++.. ..+..+-++ |+ +- +..|..+.++ .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 5899999999999999874322 100 22222222 222222221 21 11 1223333210 11
Q ss_pred CCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 368 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+.+||+|++...+.. ++-++-|+|+|||.+++--
T Consensus 160 ~~~fD~I~~~~~~~~------------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASASE------------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBSS------------CCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHH------------HHHHHHHhcCCCcEEEEEE
Confidence 357999986665543 4678889999999999853
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.013 Score=62.29 Aligned_cols=118 Identities=21% Similarity=0.182 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhc----CC--------ccceEEEEcCCHHHHHHHHHc-
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----EL--------LTMCIANYEASGSQVQLTLER- 88 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~----~~--------~~~~v~gvD~S~~~i~~A~er- 88 (458)
....+.+.+++. .....+|+|-.||+|.|.....+. .. ....+.|.|+++.+...|+-+
T Consensus 203 ~~Vv~lmv~l~~--------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 203 RPVVRFMVEVMD--------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp HHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 445555555553 233468999999999998765431 10 123699999999999998764
Q ss_pred ---CC-CeEEEeeccCCCCC----CCCCeeEEEecccccc-c-------------cccHH-HHHHHHHhccc-------C
Q 012709 89 ---GL-PAMIGSFASKQLPY----PSLSFDMLHCARCGVD-W-------------DQKDG-ILLLEVDRVLK-------P 138 (458)
Q Consensus 89 ---~~-~~~~~~~d~~~Lpf----p~~sFD~I~~~~~l~~-~-------------~~~~~-~~L~ei~RvLk-------P 138 (458)
+. ...+..+|+...|+ +...||+|+++--+-. + ..+.. .++..+.+.|| |
T Consensus 275 ~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~ 354 (530)
T 3ufb_A 275 LLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN 354 (530)
T ss_dssp HHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS
T ss_pred HhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC
Confidence 44 34566666655443 2357999999854311 0 01111 45667777776 7
Q ss_pred CcEEEEEeC
Q 012709 139 GGYFVWTSP 147 (458)
Q Consensus 139 GG~liis~~ 147 (458)
||+++++.|
T Consensus 355 gGr~avVlP 363 (530)
T 3ufb_A 355 GGRAAVVVP 363 (530)
T ss_dssp CCEEEEEEE
T ss_pred CceEEEEec
Confidence 999999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00037 Score=69.89 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=60.8
Q ss_pred CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc-cccccccccccccCCCCCCcccccccccccccc
Q 012709 305 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD-RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 305 ~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~-rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
...++|+|+|||.|.++.+|.++...+-+..+ |-+..+..+-+ .++--+-+|..+++ | .||++.+..+|..+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~~~~~v~~~~~d~~~~~---~-~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVF---DQPQVVGNLTGNENLNFVGGDMFKSI---P-SADAVLLKWVLHDW 264 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEE---ECHHHHSSCCCCSSEEEEECCTTTCC---C-CCSEEEEESCGGGS
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEe---ccHHHHhhcccCCCcEEEeCccCCCC---C-CceEEEEcccccCC
Confidence 35689999999999999999854333222211 11111111111 12322344555544 4 49999999998877
Q ss_pred ccCCCCCCcchhhhhhcccccC---CceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRP---EGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp---~g~~~~~ 412 (458)
. +. ....+|-++-|+|+| ||.++|-
T Consensus 265 ~---d~-~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 265 N---DE-QSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp C---HH-HHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred C---HH-HHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 2 11 123789999999999 9999984
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0024 Score=62.60 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhc----CCccceEEEEcCCHH--------------------------HHHHHHHc----
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGS--------------------------QVQLTLER---- 88 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~----~~~~~~v~gvD~S~~--------------------------~i~~A~er---- 88 (458)
..+++|||+|+..|..+..++.. +.+..+|+++|..+. .++.++++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 34579999999999888777542 223558999996421 23444443
Q ss_pred C---CCeEEEeeccCC-CC-CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 89 G---LPAMIGSFASKQ-LP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 89 ~---~~~~~~~~d~~~-Lp-fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+ .++.+..+++.+ +| ++.++||+|+.-.- .-..-...|..+...|+|||++++-+.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 3 358888887643 33 45678999996532 111223689999999999998888664
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00029 Score=64.80 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=54.9
Q ss_pred eEEeeccccchhhhhhhhccCCC-eEEEEeecCCCC-CCchhhhcc----cc--cc-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR----GF--VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~-~~l~~~~~r----gl--~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.+++.|.+...+ . +|+-++.. ..+..+-++ |+ +- ...|..+.++ -+.+||+|.+..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 48999999999999998743211 1 22333322 333333332 22 11 1223333333 135799999887
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
.+... .-++-|+|||||.+++.-.
T Consensus 155 ~~~~~------------~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 155 AGPKI------------PEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp BBSSC------------CHHHHHTEEEEEEEEEEES
T ss_pred chHHH------------HHHHHHHcCCCcEEEEEEC
Confidence 77654 2378899999999998643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00041 Score=63.82 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=57.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc----cccc-ccccccCCCC-CCc-ccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVL-HDWCEAFPTY-PRT-YDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl----~g~~-~~~~~~~~~y-p~t-~dl~h 375 (458)
..|||+|||.|+++..++.+. . -.|+-+|-. ..+..+-+ .|+ +-++ .|..+..+.. +.+ ||+|-
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~--~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQ--A--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTT--C--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred CeEEEcCCccCHHHHHHHHcc--C--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEE
Confidence 479999999999998766322 1 134444443 33433322 233 1112 2333222222 468 99998
Q ss_pred ccccccccccCCCCCCcchhhhhh--cccccCCceEEEeccHH
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDTAR 416 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~--drilrp~g~~~~~d~~~ 416 (458)
++..|. .-....++-++ -|+|+|||.+++.....
T Consensus 131 ~~~~~~-------~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 131 LDPPFH-------FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp ECCCSS-------SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred ECCCCC-------CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 776643 11244566677 78999999999976553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0033 Score=61.77 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=70.2
Q ss_pred eEEeeccc------cchh-hhhhhhccCCCeEEEEeecCCCCCCchhhhcccccc-ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNA------HFGG-FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVG-VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~------~~g~-faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g-~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|| |.|+ .+|.+...+..|.-+-+.|. + + ++-= +..|+.+. + ++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v----~-~v~~~i~gD~~~~-~-~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V----S-DADSTLIGDCATV-H-TANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B----C-SSSEEEESCGGGC-C-CSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C----C-CCEEEEECccccC-C-ccCcccEEEEcCC
Confidence 46999999 5586 23333310122333333332 2 1 2222 44566552 2 3478999997643
Q ss_pred ccc--cc---cCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccc-eEEEEeeccCCCccEEEEEe
Q 012709 380 LSL--ES---GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKW-DARVIEIESNSDERLLICQK 450 (458)
Q Consensus 380 ~~~--~~---~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~k 450 (458)
... .. .....-.+..++-|+-|+|||||.|++... ..-..++.++++...+ .+...-....+.|-+|+++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 221 00 000011123678899999999999998431 1123466777777744 45555222334577888765
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00037 Score=69.70 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=59.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|+|+|||.|.++.+|.+..... +|+-+|.. .-+..+-+ .|+-..+ -+...++.-+.+||+|-++..|..
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI---RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC---BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCccc
Confidence 469999999999999997443211 23333332 22222221 2332111 122222323679999998887753
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
-.. ...-....++-|+-|+|+|||.+++-.
T Consensus 274 g~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 274 GMQ-TSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SSH-HHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred Ccc-CCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 100 011234578999999999999999854
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.005 Score=59.35 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcC-Cc--cceEEEEcCCHHHHHHHHH-cCCCe-EEEee-ccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKE-LL--TMCIANYEASGSQVQLTLE-RGLPA-MIGSF-ASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~-~~--~~~v~gvD~S~~~i~~A~e-r~~~~-~~~~~-d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||+||+.|.++.+.+++- +. ...++++|.+.. ..... .+.++ .+..+ |...+ +...+|+|+|--
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~--P~~~~~~Gv~~i~~~~G~Df~~~--~~~~~DvVLSDM 147 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE--PMLMQSYGWNIVTMKSGVDVFYK--PSEISDTLLCDI 147 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCC--CCCCCSTTGGGEEEECSCCGGGS--CCCCCSEEEECC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccC--CCcccCCCceEEEeeccCCccCC--CCCCCCEEEeCC
Confidence 345799999999999999999861 11 123445552100 00000 12222 33335 66654 345799999853
Q ss_pred ccccccccH----H---HHHHHHHhcccCCc-EEEEEeCC
Q 012709 117 CGVDWDQKD----G---ILLLEVDRVLKPGG-YFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~----~---~~L~ei~RvLkPGG-~liis~~~ 148 (458)
. .. .... . .+|.-+.++|+||| .|++-.+.
T Consensus 148 A-Pn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 148 G-ES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp C-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C-CC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 2 22 2221 1 24656679999999 99997763
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00063 Score=84.38 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCEEEEECCCCchhHHHHhhcC----CccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCC-CCCCCCeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKE----LLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQL-PYPSLSFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~----~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~L-pfp~~sFD~I~~~~~ 117 (458)
..+|||||.|+|..+..+.+.- ....+++-+|+|+...+.|+++- ..+.....|.... ++..++||+|+++.+
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 4589999999997765544321 01347889999988776666551 2223322333332 445678999999987
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+ |-+.+....|.+++++|||||++++.+.
T Consensus 1321 l-~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1321 L-ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ---------------------CCEEEEEEC
T ss_pred c-cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 5555667899999999999999999764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.035 Score=52.92 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHH---HHHcC-CCeEEEee-ccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERG-LPAMIGSF-ASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~---A~er~-~~~~~~~~-d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+||++|.++.+.+.+.. ..+|.|+|+-..--+. .+..| ..+.+..+ |...++ ...+|.|+|--.
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~--~~~~DtllcDIg- 153 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP--PEKCDTLLCDIG- 153 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC--CCCCSEEEECCC-
T ss_pred CCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC--CccccEEEEecC-
Confidence 445999999999999998887642 4589999987542210 01112 24567766 655553 266999999632
Q ss_pred ccccccHH-------HHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDG-------ILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~-------~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. -..++. ++|.-+.+.|++ |.|++-...+
T Consensus 154 e-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 154 E-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp C-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred C-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 2 222221 356666889998 7888877655
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0023 Score=59.79 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=66.8
Q ss_pred eEEeeccccchhhhhhhhccC--CCeEEEEeecCCCCCCchhhhc----c-ccccccccccccC--CCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLPMILD----R-GFVGVLHDWCEAF--PTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~--~~~~~m~v~~~~~~~~l~~~~~----r-gl~g~~~~~~~~~--~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|.+.- ..|..+-+.|. .+..+-+ + .+.-+..|..++. ..++.+||+|-.
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~----~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~-- 149 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPR----IMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE-- 149 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH----HHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEE--
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHH----HHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEE--
Confidence 579999999999999887431 23333333321 1111111 0 1111122322210 122367999761
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe----ccH------H-HHHHHHHHHhhccceEEE-EeeccC-CCccE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----DTA------R-LIESARALTTRLKWDARV-IEIESN-SDERL 445 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~----d~~------~-~~~~~~~~~~~~~w~~~~-~~~~~~-~~~~~ 445 (458)
.. ...-....++-++-|+|+|||.+++- ... . .-+.++ ++....++..- .+.+.. .+.-+
T Consensus 150 ---~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~ 222 (230)
T 1fbn_A 150 ---DV---AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVM 222 (230)
T ss_dssp ---CC---CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEE
T ss_pred ---ec---CChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEE
Confidence 11 11111245689999999999999992 111 1 125566 55555565433 222221 12456
Q ss_pred EEEEec
Q 012709 446 LICQKP 451 (458)
Q Consensus 446 ~~~~k~ 451 (458)
++++|+
T Consensus 223 v~~~k~ 228 (230)
T 1fbn_A 223 FVGIWE 228 (230)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 777763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0039 Score=60.46 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=75.0
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCCCCchhhhcc------cc----cccc-ccccccCCCCCCccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGTNHLPMILDR------GF----VGVL-HDWCEAFPTYPRTYDLV 374 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~~~l~~~~~r------gl----~g~~-~~~~~~~~~yp~t~dl~ 374 (458)
-++|||+|||.|+++..++ .. ++-.+-+|=.+. .-+.++-+. ++ +-++ .|-.+-....+.+||+|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~--~~~~~~~v~~vEid~-~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREIL--KHPSVKKATLVDIDG-KVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp CCEEEEESCTTCHHHHHHT--TCTTCSEEEEEESCH-HHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCEEEEECCchHHHHHHHH--hCCCCceEEEEECCH-HHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 4789999999999999998 44 332221221111 111111110 11 1111 12111112235789999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEeec--c--CCCccE
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE--S--NSDERL 445 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~~--~--~~~~~~ 445 (458)
-++.. ..... ....-...++-++-|+|+|||.+++... .+.+..+.+.+++.--.+...... . ++.-.+
T Consensus 153 i~d~~-~~~~~-~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~ 230 (275)
T 1iy9_A 153 MVDST-EPVGP-AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (275)
T ss_dssp EESCS-SCCSC-CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EECCC-CCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEE
Confidence 97543 22210 0111124678899999999999999732 344555555555553445544321 1 233567
Q ss_pred EEEEecc
Q 012709 446 LICQKPF 452 (458)
Q Consensus 446 ~~~~k~~ 452 (458)
++|.|++
T Consensus 231 ~~ask~~ 237 (275)
T 1iy9_A 231 TIGSKKY 237 (275)
T ss_dssp EEEESSC
T ss_pred EEeeCCC
Confidence 8888863
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0028 Score=62.17 Aligned_cols=139 Identities=13% Similarity=0.077 Sum_probs=72.9
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc------ccc----ccc-cccccccCCCCCCccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD------RGF----VGV-LHDWCEAFPTYPRTYDLV 374 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~------rgl----~g~-~~~~~~~~~~yp~t~dl~ 374 (458)
++|||+|||.|+++..|. .. +.. +|+-++-. .-+.++-+ .|+ +-+ ..|..+..+..+.+||+|
T Consensus 92 ~~VLdiG~G~G~~~~~l~--~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVL--KHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp CEEEEEECTTCHHHHHHT--TSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CEEEEEcCCcCHHHHHHH--hcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 689999999999999998 44 332 23323322 22222211 111 111 222222222335789999
Q ss_pred cccccccc-cccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEeec--c--CCCcc
Q 012709 375 HAEGLLSL-ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE--S--NSDER 444 (458)
Q Consensus 375 h~~~~~~~-~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~~--~--~~~~~ 444 (458)
-++. +.. ... ...-....++-++-|+|+|||.+++... .+....+.+.+++.--.+...... . ++.-.
T Consensus 168 i~d~-~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~ 245 (296)
T 1inl_A 168 IIDS-TDPTAGQ-GGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWS 245 (296)
T ss_dssp EEEC------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEE
T ss_pred EEcC-CCcccCc-hhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceE
Confidence 8653 222 100 0011124678899999999999999622 233444444444443445544321 1 23466
Q ss_pred EEEEEecc
Q 012709 445 LLICQKPF 452 (458)
Q Consensus 445 ~~~~~k~~ 452 (458)
+++|.|++
T Consensus 246 f~~as~~~ 253 (296)
T 1inl_A 246 YTFASKGI 253 (296)
T ss_dssp EEEEESSC
T ss_pred EEEecCCC
Confidence 88898864
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0029 Score=60.47 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc-----c-c---cc-ccccccccCCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR-----G-F---VG-VLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r-----g-l---~g-~~~~~~~~~~~yp~t~dl~h 375 (458)
.+|+|+|||.|.++.+|... .... +|+-++-. ..+..+-++ | + +- +..|..+. +.-+.+||+|-
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v~ 176 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAV 176 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEEE
T ss_pred CEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEEE
Confidence 47999999999999999842 1111 33334432 333333332 3 1 11 22344332 11146899987
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhh-ccce
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTR-LKWD 431 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~-~~w~ 431 (458)
++ --....++-++-|+|+|||.+++-. ..+.+.++...+.. ..|.
T Consensus 177 ~~-----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 177 LD-----------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EE-----------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EC-----------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 42 1233467999999999999999854 33344444444433 4443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00051 Score=67.89 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=56.4
Q ss_pred eEEeeccccchhhhhhhhccCCC-eEEEEeecCCCC-CCchhhhcc----cccc---ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR----GFVG---VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~-~~l~~~~~r----gl~g---~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|+++..|.+.... . +|+-++-. ..+..+-++ |+-. ...|..+..+ -+.+||+|.+..
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKG---LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIFVTV 152 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECS
T ss_pred CEEEEecCCchHHHHHHHHhcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEEEcC
Confidence 47999999999999988743222 1 12333322 344443332 4421 1233333222 135799999888
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+... .-++-|.|+|||.+++....
T Consensus 153 ~~~~~------------~~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 153 GVDEV------------PETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BBSCC------------CHHHHHHEEEEEEEEEEBCB
T ss_pred CHHHH------------HHHHHHhcCCCcEEEEEECC
Confidence 77655 24678899999999997543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=66.19 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=56.6
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCCCCc----hhhhcccc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHL----PMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~~~l----~~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||+|-++-.....+ +.|..+ +....+ .++-+.|+ |-+++.--+.+. .|..+|+|=+.-+
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~~V~av-----e~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-lpe~~DvivsE~~ 158 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGARRVYAV-----EASAIWQQAREVVRFNGLEDRVHVLPGPVETVE-LPEQVDAIVSEWM 158 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEE-----ECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSCEEEEECCCC
T ss_pred CEEEEeCCCccHHHHHHHHhCCCEEEEE-----eChHHHHHHHHHHHHcCCCceEEEEeeeeeeec-CCccccEEEeecc
Confidence 479999999997643222112 334433 332222 23445676 555555444443 3678998865333
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
.+.+ ..-..+..++-..||.|+|||.+|
T Consensus 159 ~~~l---~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 159 GYGL---LHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp BTTB---TTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred cccc---cccchhhhHHHHHHhhCCCCceEC
Confidence 3333 233456688889999999999988
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0046 Score=60.56 Aligned_cols=42 Identities=21% Similarity=-0.008 Sum_probs=38.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
....|||++||+|.++..+++.+. +++|+|+++.+++.|++|
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKER 276 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 456999999999999999998774 899999999999999887
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0072 Score=59.09 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 87 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e 87 (458)
....+||.+||.|..+..+++++ .+|+|+|.++.+++.|++
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHh
Confidence 34699999999999999999973 489999999999999986
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00043 Score=61.77 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=54.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc---ccc-cccccccCCCC---CCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGV-LHDWCEAFPTY---PRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl---~g~-~~~~~~~~~~y---p~t~dl~h 375 (458)
.+|||+|||.|.++.++.. .+.. +|+-+|-. ..+..+- ..|+ +-+ ..|+.+..+.. +.+||+|-
T Consensus 46 ~~vLD~GcG~G~~~~~~~~--~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVS--RGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CEEEETTCTTCHHHHHHHH--TTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEeCCccCHHHHHHHH--cCCC--EEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 5899999999999988773 3311 23333332 2232221 1232 112 23444422211 36899998
Q ss_pred ccccccccccCCCCCCcchhhhhh--cccccCCceEEEecc
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDT 414 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~--drilrp~g~~~~~d~ 414 (458)
++..|... ....++-++ -|+|+|||.+++...
T Consensus 122 ~~~~~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQ-------EIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp ECCCGGGC-------CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ECCCCCch-------hHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 77665411 223444445 899999999998643
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0022 Score=62.34 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=73.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc-----cc-----------cccc-ccccccCCCCCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----GF-----------VGVL-HDWCEAFPTYPR 369 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r-----gl-----------~g~~-~~~~~~~~~yp~ 369 (458)
++|||+|||.|+++..|. ..+.- +|+-++-. .-+.++-++ |+ +-++ .|-.+-... +.
T Consensus 77 ~~VLdiG~G~G~~~~~l~--~~~~~--~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVL--QHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CEEEEEECTTSHHHHHHT--TSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CeEEEEcCCcCHHHHHHH--hCCCC--EEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 689999999999999998 44421 22222221 222221111 21 1111 121111122 57
Q ss_pred ccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccceEEEEee--cc-CC
Q 012709 370 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDARVIEI--ES-NS 441 (458)
Q Consensus 370 t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~~~~~~~--~~-~~ 441 (458)
+||+|-++... .+.. ...--...++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+..... .. ++
T Consensus 152 ~fD~Ii~d~~~-~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g 229 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGP-AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYAS 229 (281)
T ss_dssp CEEEEEEECCC-CC------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSS
T ss_pred CeeEEEECCCC-CCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCc
Confidence 89999975432 2200 001012467889999999999999962 334455555555554444444332 12 23
Q ss_pred CccEEEEEec
Q 012709 442 DERLLICQKP 451 (458)
Q Consensus 442 ~~~~~~~~k~ 451 (458)
.-.+++|.|.
T Consensus 230 ~~~~~~as~~ 239 (281)
T 1mjf_A 230 PWAFLVGVKG 239 (281)
T ss_dssp SEEEEEEEES
T ss_pred eEEEEEeeCC
Confidence 3668888886
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0036 Score=62.03 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=49.0
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCC-CCchhhhcc----c----------c---cc-ccccccccCC
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGT-NHLPMILDR----G----------F---VG-VLHDWCEAFP 365 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~-~~l~~~~~r----g----------l---~g-~~~~~~~~~~ 365 (458)
.+|||+|||.|.++.+|... + ..|..+ +-. ..+..+-++ | + +- ...|..+...
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~~v~~v-----D~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQGRVISF-----EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEE-----ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCceEEEE-----eCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc
Confidence 58999999999999998743 2 223322 221 222222211 0 0 11 1233333221
Q ss_pred CCC-CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 366 TYP-RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 366 ~yp-~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.++ .+||+|.++. . .-..++-++-|+|||||.+++-.
T Consensus 182 ~~~~~~fD~V~~~~-~----------~~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 182 DIKSLTFDAVALDM-L----------NPHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp ------EEEEEECS-S----------STTTTHHHHGGGEEEEEEEEEEE
T ss_pred ccCCCCeeEEEECC-C----------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 223 4799998532 1 12236888999999999999854
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=62.85 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=60.4
Q ss_pred ceeEEeeccccc---hhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cccc-cccccc------------ccC
Q 012709 306 MVRNVLDMNAHF---GGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG-VLHDWC------------EAF 364 (458)
Q Consensus 306 ~~r~~~d~~~~~---g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g-~~~~~~------------~~~ 364 (458)
.++.|||+|||. |.++..+....... .|+-+|-. ..|..+-++ +-+- +-.|.. +.|
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 378999999999 98876664221121 23333332 333322221 1010 111221 123
Q ss_pred CCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 365 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 365 ~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
+. .+||++-+.++|-.+ .+. ....+|=|+-|+|+|||++++.+.
T Consensus 154 d~--~~~d~v~~~~vlh~~---~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DF--SRPAAIMLVGMLHYL---SPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CT--TSCCEEEETTTGGGS---CTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CC--CCCEEEEEechhhhC---CcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 21 378999888888877 333 677899999999999999999754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0024 Score=62.89 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=73.4
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhcc------cc----cc-ccccccccCCC-CCCcccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILDR------GF----VG-VLHDWCEAFPT-YPRTYDL 373 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~r------gl----~g-~~~~~~~~~~~-yp~t~dl 373 (458)
++|||+|||.|+++..|. .. ++- .|+-++-. .-+.++-++ ++ +- +..|..+-... -+.+||+
T Consensus 97 ~~VLdiG~G~G~~~~~l~--~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVL--RHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp CEEEEEECTTSHHHHHHH--TCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CeEEEEcCCCCHHHHHHH--hCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 689999999999999998 43 222 22222221 222221111 11 11 12232221111 2578999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----HHHHHHHHHHhhccce-EEEEeec--c--CCCc
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----RLIESARALTTRLKWD-ARVIEIE--S--NSDE 443 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----~~~~~~~~~~~~~~w~-~~~~~~~--~--~~~~ 443 (458)
|-++....... ....--..++-++-|+|+|||.+++.... .....+.+.++...+. +...... . ++.-
T Consensus 173 Ii~d~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w 250 (304)
T 3bwc_A 173 VIIDTTDPAGP--ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSI 250 (304)
T ss_dssp EEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCC
T ss_pred EEECCCCcccc--chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcce
Confidence 99754332210 00111146788999999999999996322 3556666666666554 4443321 1 2235
Q ss_pred cEEEEEec
Q 012709 444 RLLICQKP 451 (458)
Q Consensus 444 ~~~~~~k~ 451 (458)
.+++|.|.
T Consensus 251 ~f~~as~~ 258 (304)
T 3bwc_A 251 GTLVCSKK 258 (304)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 67888875
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00061 Score=64.52 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=30.9
Q ss_pred CccccccccccccccccCCC---CCCcchhhhhhcccccCCceEEEeccH
Q 012709 369 RTYDLVHAEGLLSLESGHRH---RCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~---~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+||+|-++-.|........ .-....++-++-|+|+|||++++-++.
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 48999998765543310000 112336788899999999999996544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0031 Score=62.37 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=55.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|+++.+|.+.-.+-. .|+-.|-. ..+..+-++ |+ +-+. .|. +.++.++.+||+|-++--
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~~--~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRNDG--VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTCS--EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeCC
Confidence 4799999999999999874311100 23333433 334433332 44 1222 222 223334568999987533
Q ss_pred cccc---ccCCC---C---CC-------cchhhhhhcccccCCceEEEe
Q 012709 380 LSLE---SGHRH---R---CS-------TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~---~~~~~---~---c~-------~~~~~~e~drilrp~g~~~~~ 412 (458)
.|.. +...+ + -. -..+|-++-|+|||||.+++.
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 2211 00000 0 00 036788899999999999994
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0007 Score=62.25 Aligned_cols=97 Identities=9% Similarity=0.034 Sum_probs=55.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..+..+... .|+-+|-. ..+..+-+ .|+ +-++ .|..+..+.-+.+||+|-++..
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~~----~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYAA----GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS----EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CeEEEeCCCcCHHHHHHHhcCCC----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 57999999999999876632211 44445543 33333322 233 2122 2333322333468999986655
Q ss_pred ccccccCCCCCCcchhhhhh--cccccCCceEEEeccH
Q 012709 380 LSLESGHRHRCSTLDIFTEI--DRILRPEGWVIIRDTA 415 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~--drilrp~g~~~~~d~~ 415 (458)
|.. -....++-++ -|+|+|||.+++....
T Consensus 132 ~~~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 132 FRR-------GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp SST-------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCC-------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 431 1233455555 4579999999997554
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0007 Score=63.49 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=52.4
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCCCCchhhhc----ccccc---ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMILD----RGFVG---VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~~~l~~~~~----rgl~g---~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.+++.|.+.. ..|..+-+.| ..+..+-+ .|+-. ...|...+++. ...||+|.++..
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIVKTDVYTIERIP----ELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAG 167 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHHCSCEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSB
T ss_pred CEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH----HHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCc
Confidence 589999999999999997432 2333332211 23333222 23211 12233333432 124999997766
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+..+ .-++-|+|+|||.+++.-
T Consensus 168 ~~~~------------~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 168 APKI------------PEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp BSSC------------CHHHHHTEEEEEEEEEEE
T ss_pred HHHH------------HHHHHHhcCCCcEEEEEE
Confidence 6544 337889999999999854
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0015 Score=68.72 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=58.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhcccc---cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl---~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|.++..|.+ .+.. .|+-++.+..+.. +.+.|+ |-++ .|+-+ + .+|..||+|-++.+
T Consensus 160 ~~VLDiGcGtG~la~~la~--~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQ--AGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPM 233 (480)
T ss_dssp CEEEEESCSTTHHHHHHHH--TTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCC
T ss_pred CEEEEecCcccHHHHHHHH--cCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCc
Confidence 5899999999999988873 3321 2333333222222 233355 2222 23333 2 24678999998777
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+..+. .-.+...+.++-|+|+|||.+++
T Consensus 234 ~~~~~----~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLF----NERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHT----CHHHHHHHHHGGGGEEEEEEEES
T ss_pred hHhcC----cHHHHHHHHHHHHhcCCCCEEEE
Confidence 65541 12345677799999999999984
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0017 Score=65.15 Aligned_cols=138 Identities=9% Similarity=0.011 Sum_probs=85.3
Q ss_pred CCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhh---cccc----ccccccccccCCCCCCccccc
Q 012709 302 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL---DRGF----VGVLHDWCEAFPTYPRTYDLV 374 (458)
Q Consensus 302 ~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~---~rgl----~g~~~~~~~~~~~yp~t~dl~ 374 (458)
.+|+..+.|+|+|||.|.++.+|.++...+= ++-.+-|..+..+- +.+. -=+-||.-+ .-+..+|++
T Consensus 175 ~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~---~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~---~~~~~~D~~ 248 (353)
T 4a6d_A 175 FDLSVFPLMCDLGGGAGALAKECMSLYPGCK---ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFK---DPLPEADLY 248 (353)
T ss_dssp SCGGGCSEEEEETCTTSHHHHHHHHHCSSCE---EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTT---SCCCCCSEE
T ss_pred cCcccCCeEEeeCCCCCHHHHHHHHhCCCce---eEeccCHHHHHHHHHhhhhcccCceeeecCcccc---CCCCCceEE
Confidence 4578899999999999999999986543332 22222232222221 1121 112244322 223358999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH--------------H------------HHHHHHHHHhhc
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA--------------R------------LIESARALTTRL 428 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~--------------~------------~~~~~~~~~~~~ 428 (458)
....++-.|.. ..| ..||-++=|.|+|||.++|-|.. + ..++.+++++.-
T Consensus 249 ~~~~vlh~~~d--~~~--~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~A 324 (353)
T 4a6d_A 249 ILARVLHDWAD--GKC--SHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSA 324 (353)
T ss_dssp EEESSGGGSCH--HHH--HHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHH
T ss_pred EeeeecccCCH--HHH--HHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHC
Confidence 98888887731 123 46889999999999999985321 0 124667777777
Q ss_pred cceE-EEEeeccCCCccEEEEEec
Q 012709 429 KWDA-RVIEIESNSDERLLICQKP 451 (458)
Q Consensus 429 ~w~~-~~~~~~~~~~~~~~~~~k~ 451 (458)
-|+. ++.. .++...+++++|.
T Consensus 325 Gf~~v~v~~--~~~~~~~i~ArKg 346 (353)
T 4a6d_A 325 GFRDFQFKK--TGAIYDAILARKG 346 (353)
T ss_dssp TCEEEEEEC--CSSSCEEEEEECC
T ss_pred CCceEEEEE--cCCceEEEEEEec
Confidence 7774 3433 3444678999986
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0082 Score=54.53 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=68.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-ccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|+|+|||.|+|+.+|...... +|+-+|-. ..+..+-+ .|+ +-++ +..+..+|.+||+|-++.-|.
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~---~~d~~~~~~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKGKFKVF---IGDVSEFNSRVDIVIMNPPFG 123 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTTSEEEE---ESCGGGCCCCCSEEEECCCCS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHHHHHcCCCEEEE---ECchHHcCCCCCEEEEcCCCc
Confidence 58999999999999999843211 23333332 23332222 232 1122 222222456899999888776
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
.. .. -....++-++-|+| ||.+++. ......+.+.+++....|++...
T Consensus 124 ~~---~~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 124 SQ---RK-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SS---ST-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cc---cC-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 55 21 22335666777788 6655554 36667788888888888876554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0064 Score=60.38 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=74.5
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhcc------cc----cc-ccccccccCCCCCCccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILDR------GF----VG-VLHDWCEAFPTYPRTYDLV 374 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~r------gl----~g-~~~~~~~~~~~yp~t~dl~ 374 (458)
++|||+|||.|+++.++. .. +.. .|+-++-. .-+.++-++ |+ +- +..|..+..+..+.+||+|
T Consensus 118 ~~VLdiG~G~G~~~~~l~--~~~~~~--~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELC--KYKSVE--NIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp CEEEEEECTTCHHHHHHT--TCTTCC--EEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CEEEEEcCCccHHHHHHH--HcCCCC--EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 689999999999999998 44 332 23333322 222222111 11 11 2233333222235789999
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccceEEEEeec--cC--CCccE
Q 012709 375 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDARVIEIE--SN--SDERL 445 (458)
Q Consensus 375 h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~~~~~~~~--~~--~~~~~ 445 (458)
-++. +..+.. ....--..++-++-|+|+|||.+++.. ..+.+.++.+.++..--.+...... .. +.-.+
T Consensus 194 i~d~-~~p~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f 271 (321)
T 2pt6_A 194 IVDS-SDPIGP-AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGI 271 (321)
T ss_dssp EEEC-CCSSSG-GGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEE
T ss_pred EECC-cCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEE
Confidence 8753 222210 001111467888999999999999953 2234555555555554455544321 11 12346
Q ss_pred EEEEecc
Q 012709 446 LICQKPF 452 (458)
Q Consensus 446 ~~~~k~~ 452 (458)
++|.|.+
T Consensus 272 ~~as~~~ 278 (321)
T 2pt6_A 272 LCCSKTD 278 (321)
T ss_dssp EEEESST
T ss_pred EEeeCCC
Confidence 7888764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 458 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-08 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-07 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-06 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 8e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 6e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 6e-04 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 7e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.001 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.001 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.004 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.004 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 51.6 bits (122), Expect = 5e-08
Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 8/173 (4%)
Query: 15 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIAN 74
++ +E +I + + E VR +LD+ CG G L + + +
Sbjct: 14 TIYRRRIERVKAEIDFVEEIFKE--DAKREVRRVLDLACGTGIPTLELAERGYEVVGLDL 71
Query: 75 YEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD--WDQKDGILLLEV 132
+E + + + FD + + ++ L +V
Sbjct: 72 HEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKV 131
Query: 133 DRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDET 185
LKPGG F+ P F ++ WN + + + + +
Sbjct: 132 AEALKPGGVFI----TDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 3e-07
Identities = 29/268 (10%), Positives = 68/268 (25%), Gaps = 48/268 (17%)
Query: 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL---------FSKELLTMCI 72
+Y + ++ G +LD+ CG G L +
Sbjct: 42 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY 93
Query: 73 ANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS-------LSFDMLHCARCGVDWDQKD 125
A E + + ++ + + + +
Sbjct: 94 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEH 153
Query: 126 GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWN--FVRDFVENLCWELVSQQD 183
+ L + +++PGG V N L N + D +++ +++ +
Sbjct: 154 RLALKNIASMVRPGGLLVIDHR--NYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNN 211
Query: 184 ETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRN 243
+ + Y+ + PG+G + YY +
Sbjct: 212 KAHMVTLD-----YTVQVPGAGRDGAPGFSKFRLSYY--------------PHCLASFTE 252
Query: 244 WPSRANLNKNELAVYG-VHPEEFAEDTE 270
A + + +V G P +
Sbjct: 253 LVQEAFGGRCQHSVLGDFKPYRPGQAYV 280
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 45.7 bits (107), Expect = 4e-06
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 26/177 (14%)
Query: 32 IGLRNESNFILAGV--------RTILDIGCGYGSFGAHL------------FSKELLTMC 71
I +RN +NFI A + ++LD+GCG G ++ +
Sbjct: 4 INIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDA 63
Query: 72 IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLE 131
+ ++ K+ S F + D
Sbjct: 64 RVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQR----N 119
Query: 132 VDRVLKPGGYFVWTSPLTNP--QAFLRNKENQKRWNFVRDFVENLCWELVSQQDETV 186
+ R L+PGGYF+ T P + + + + + + + + +E++ E V + T+
Sbjct: 120 IARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 176
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 44.8 bits (104), Expect = 8e-06
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 6/132 (4%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 106
+LD+G G G + L + + + + + + ++ LP+PS
Sbjct: 45 RVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAR----EKGVKNVVEAKAEDLPFPS 100
Query: 107 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNF 166
+F+ + + + + E+ RVL P G + T N FL+ + W+
Sbjct: 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD--NFYTFLQQMIEKDAWDQ 158
Query: 167 VRDFVENLCWEL 178
+ F++ +
Sbjct: 159 ITRFLKTQTTSV 170
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 16/158 (10%), Positives = 38/158 (24%), Gaps = 25/158 (15%)
Query: 10 SFRSASLIFDGVEDYSHQ-IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL 68
F + S ++++ + + +IG ++ + ++ IL IG G G + SK
Sbjct: 9 RFLNHSTEHQCMQEFMDKKLPGIIGRIGDTK---SEIK-ILSIGGGAGEIDLQILSKVQA 64
Query: 69 TMCIANYEASG-------------------SQVQLTLERGLPAMIGSFASKQLPYPSLSF 109
+ + + +
Sbjct: 65 QYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKW 124
Query: 110 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147
D +H + L +L +
Sbjct: 125 DFIHMIQMLYYVKDIPA-TLKFFHSLLGTNAKMLIIVV 161
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 22 EDYSHQIAEMIGLRNESNFILAGVR-----TILDIGCGYGSFGAHLFSKELLTMCIANYE 76
E+Y E GL + +LA + LD+GCG G +L +
Sbjct: 6 ENYFT---EKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNP 62
Query: 77 ASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW--DQKDGILLLEVDR 134
AS + ++ + + + + + Q L+ + R
Sbjct: 63 ASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQR 122
Query: 135 VLKPGGYFVWTSPLTNPQ 152
KPGGY + + + P
Sbjct: 123 CTKPGGYNLIVAAMDTPD 140
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 39.3 bits (91), Expect = 6e-04
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 106
I+D G G G+ A L + + YE +L + + ++ S
Sbjct: 106 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165
Query: 107 LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 151
FD +D + + LK GG F P TN
Sbjct: 166 EGFDEKDVDALFLDVPDPWNYID-KCWEALKGGGRFATVCPTTNQ 209
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 10/136 (7%)
Query: 22 EDYSHQIAEMIGLRNESNFILAGVR-------TILDIGCGYGSFGAHLFSKELLTMCIAN 74
Y I + + S+FI+ LD+ CG G+ +L K T +
Sbjct: 8 HIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDL 67
Query: 75 YEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGIL---LLE 131
+ S+ + + + FD++ C ++ L
Sbjct: 68 SQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKA 127
Query: 132 VDRVLKPGGYFVWTSP 147
V LK GG F++
Sbjct: 128 VSNHLKEGGVFIFDIN 143
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 38.7 bits (89), Expect = 7e-04
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 105
+L++G G F + L C+ EAS + R + + +
Sbjct: 22 GNLLELGSFKGDFTSRLQEHFNDITCV---EASEEAISHAQGRLKDGITYIHSRFEDAQL 78
Query: 106 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 160
+D + D +L D L GG P N + +
Sbjct: 79 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKM 133
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 39.1 bits (90), Expect = 7e-04
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 105
I+D GCGYG G L ++ + + E S +
Sbjct: 29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE 88
Query: 106 SLSFDMLHCARC--GVDWDQKDGILLLEVDRVLKPGGYFVWTSP--LTNPQAFLRNKENQ 161
D A C + +L ++ +K GG + P ++N ++L + E Q
Sbjct: 89 IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQ 148
Query: 162 KRW 164
+
Sbjct: 149 SEF 151
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 38.1 bits (88), Expect = 0.001
Identities = 11/123 (8%), Positives = 33/123 (26%), Gaps = 1/123 (0%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 105
IL++G G G+ +++ + E ++ ++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 106 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWN 165
+ D + ++ ++KPG + P + + +
Sbjct: 147 ADFISDQMYDAVIADIPDPWNHVQ-KIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205
Query: 166 FVR 168
+
Sbjct: 206 HLE 208
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.0 bits (87), Expect = 0.001
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query: 47 TILDIGCGYGSFGAHL--FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY 104
+LDIG G G + +E + + + + ++ LP+
Sbjct: 19 RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78
Query: 105 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRW 164
P SFD++ C + + EV RVLK G F+ L E
Sbjct: 79 PDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRFLLVDHYAPEDPVLD--EFVNHL 135
Query: 165 NFVRD 169
N +RD
Sbjct: 136 NRLRD 140
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 36.6 bits (84), Expect = 0.004
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIA--NYEASGSQVQLTLERGLPAMIGSFASKQLPY 104
IL +G G+ +H+ + A ++ + + +
Sbjct: 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 105 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145
+ + + V + IL+ LK GGY +
Sbjct: 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.004
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 4/104 (3%)
Query: 47 TILDIGCGYGSFGAHL---FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP 103
ILD+G G G + +++ + ++ + +
Sbjct: 36 RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95
Query: 104 YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147
+ D+ C G + + LKPGG + P
Sbjct: 96 VANEKCDVAACVGATWIAGGFAGA-EELLAQSLKPGGIMLIGEP 138
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 36.0 bits (82), Expect = 0.004
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 47 TILDIGCGYGSFG-----------AHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG 95
+D+GCG G A + E ++ N + G +TL G
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG------ 89
Query: 96 SFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 155
+ + D+ G + + +L + LKPGG + T+ L +
Sbjct: 90 --DAPEALCKIPDIDIAVVGGSGGELQE----ILRIIKDKLKPGGRIIVTAILLETKFEA 143
Query: 156 RNKENQKRWNF 166
++
Sbjct: 144 MECLRDLGFDV 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 458 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.77 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.74 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.74 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.7 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.69 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.67 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.67 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.66 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.65 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.64 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.63 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.61 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.6 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.59 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.58 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.54 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.53 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.51 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.49 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.49 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.48 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.48 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.46 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.45 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.44 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.43 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.4 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.4 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.35 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.34 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.33 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.32 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.27 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.26 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.21 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.19 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.17 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.16 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.14 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.11 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.99 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.93 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.91 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.88 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.86 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.85 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.83 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.82 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.74 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.7 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.69 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.67 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.65 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.6 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.59 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.58 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.55 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.52 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.51 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.48 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.43 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.42 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.36 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.34 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.32 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.31 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.28 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.25 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.23 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.21 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.19 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.18 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.12 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.11 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.11 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.09 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.08 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.0 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.99 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.99 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.99 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.96 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.94 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.92 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.92 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.92 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.92 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 97.88 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.87 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.87 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.86 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.86 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.84 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.83 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.8 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.8 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.77 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.72 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.68 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 97.62 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 97.6 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.56 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.56 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.52 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.52 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.52 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.5 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.48 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.47 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.45 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.43 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.43 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.42 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 97.4 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 97.37 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.36 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.32 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.19 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.18 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 97.1 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.0 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.98 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.97 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.84 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.83 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 96.76 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.72 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 96.62 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 96.54 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.24 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 96.08 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.05 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.03 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.78 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 95.48 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 95.41 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 94.91 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.84 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.81 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 94.64 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 94.57 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 94.39 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.35 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 94.34 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.33 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.12 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 94.06 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 94.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.64 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 93.38 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 93.26 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.25 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.85 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.67 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.49 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 92.07 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.79 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 91.52 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 91.13 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 90.46 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 90.11 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 89.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.49 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.3 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.92 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 88.23 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 88.1 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 87.88 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.7 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 87.66 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 87.5 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.1 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 86.45 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.27 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 86.08 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 85.84 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 85.64 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 85.58 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.49 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.92 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 84.68 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 84.45 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 84.43 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.07 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.75 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 81.19 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.19 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.8 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.5e-18 Score=163.18 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=90.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
++..+|||||||+|.++..|++++. +++|+|+|+.|++.|+++ + .++.+..+|++++|+++++||+|+|..+
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 91 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 91 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeece
Confidence 4557999999999999999998764 899999999999998776 3 3688999999999999999999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++|+. ++..+|+++.|+|||||+++++++.
T Consensus 92 l~~~~-d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 92 AHHFS-DVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeccc-CHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 76655 7889999999999999999998753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.77 E-value=1.4e-18 Score=162.02 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=89.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||||||+|.++..+++++. +++|+|+|+.|++.|+++ ..++.+.+++.+.+|+++++||+|+|..+
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~ 90 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIA 90 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccc
Confidence 4457999999999999999998864 899999999999999766 24688999999999999999999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++|+. ++..+|+++.|+|||||++++.++
T Consensus 91 l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 91 AHHFP-NPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccC-CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 77765 788999999999999999999875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.74 E-value=6.3e-18 Score=156.18 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=89.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++ +..+.+...|+..+|+++++||+|+|..+++|
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 35999999999999999998765 899999999999998875 56788888999999999999999999999888
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.. +..++|+++.|+|||||++++..+
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 753 455899999999999999999875
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.74 E-value=2.8e-17 Score=158.89 Aligned_cols=104 Identities=24% Similarity=0.293 Sum_probs=92.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..|+++. ..+|+|+|+|+.|++.|+++ ++ ++.+..+|+.++|+++++||+|+|..
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 143 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence 445799999999999999998863 34899999999999999876 33 68899999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++|+. ++..+|+++.|+|||||+|+++++..
T Consensus 144 ~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 144 AFLHSP-DKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp CGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhhcc-CHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 988887 67889999999999999999988644
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=3.7e-18 Score=159.83 Aligned_cols=100 Identities=21% Similarity=0.378 Sum_probs=87.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|++++... +..++++.+|+++++||+|+|...++|+..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCEEEEECCCCchhcccccccce---EEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhh
Confidence 446999999999999999998765 8999999999999999987544 567889999999999999998654455455
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++.++|+++.|+|||||.++++.+
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 788899999999999999999886
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.7e-17 Score=152.65 Aligned_cols=140 Identities=13% Similarity=0.135 Sum_probs=108.3
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-----CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-----~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..+..+|||||||+|.++..+++++. .+|+|+|+|+.|++.|+++.. .+.+.++|+..+++++++||+|+|..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 34557999999999999999876654 389999999999999998732 46789999999999999999999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccc--cHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLR--NKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~--~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
+++|+++.. ..+|+++.++|||||.++++++......... ........+.+.+++++.+|+.+..+.
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 988887432 4799999999999999999976443211110 111111245678889999998887553
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=3.7e-17 Score=150.32 Aligned_cols=125 Identities=22% Similarity=0.189 Sum_probs=99.5
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccccH
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD 125 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~ 125 (458)
.+|||||||+|.++..+. +++|+|+|+.|++.|++++ +.+..+++.++|+++++||+|+|..+++|+. ++
T Consensus 38 ~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD-DP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CH
T ss_pred CeEEEECCCCcccccccc-------eEEEEeCChhhcccccccc--ccccccccccccccccccccccccccccccc-cc
Confidence 479999999999988874 3579999999999999874 6788899999999999999999999988886 78
Q ss_pred HHHHHHHHhcccCCcEEEEEeCCCCcccccc---------cHHH--HHHHHHHHHHHHhhccEEEE
Q 012709 126 GILLLEVDRVLKPGGYFVWTSPLTNPQAFLR---------NKEN--QKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 126 ~~~L~ei~RvLkPGG~liis~~~~~~~~~~~---------~~e~--~~~w~~i~~l~~~~~w~~v~ 180 (458)
..+|+++.|+|+|||++++.++......... .... ...-+++..++++.+|+.+.
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 8999999999999999999997653211000 0000 00125678889999998764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.3e-16 Score=150.83 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=88.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||||||+|.++..++++. +++++|+|+|+.|++.|+++ ++ ++.+..+|...+ +++++||+|+|..
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~ 108 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVG 108 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEES
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCceeEEEEEe
Confidence 345799999999999999998752 35899999999999998876 44 488999999888 5679999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++|+. +...++++++|+|||||++++.++.
T Consensus 109 ~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 109 ATWIAG-GFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp CGGGTS-SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred hhhccC-CHHHHHHHHHHHcCcCcEEEEEecc
Confidence 988877 6678999999999999999998763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2e-16 Score=152.50 Aligned_cols=98 Identities=22% Similarity=0.366 Sum_probs=88.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..|++.. +..+++|+|+|+.|++.|+++..++.+.++|+.++|+++++||+|++..+.++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence 455799999999999999999875 56799999999999999999999999999999999999999999999876443
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++|+.|+|||||++++++|..
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEECT
T ss_pred ------HHHHHHHhCCCcEEEEEeeCC
Confidence 578999999999999999854
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=3.2e-16 Score=147.61 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=86.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...++|||||||+|.++..|++++. +++|+|+|++|++.|+++ +.++.+.++|++.++++ ++||+|+|....
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~ 115 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFST 115 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSG
T ss_pred CCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhh
Confidence 4457999999999999999999875 899999999999999876 66899999999999988 589999997544
Q ss_pred cccc--ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWD--QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~--~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++. .+..++|+++.++|||||++++..+
T Consensus 116 ~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 4433 2345899999999999999999875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.65 E-value=1.6e-16 Score=152.02 Aligned_cols=139 Identities=15% Similarity=0.195 Sum_probs=107.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+..+|||+|||+|.++..|+.++.. +|+++|+|+.|++.|+++.. .+.+...++..+++++++||+|+|..+++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence 45679999999999999998876542 79999999999999998732 36788899999999999999999999999
Q ss_pred cccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHH---HHHHHHHHHHHHHhhccEEEEeee
Q 012709 120 DWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE---NQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 120 ~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e---~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
|+++.. .++|+++.++|||||++++.++.........+.+ .....+.+++++++.+|+++..+.
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 887432 4789999999999999999886543221111111 111235677888889998887553
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.64 E-value=4.6e-16 Score=150.80 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=90.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+.+|||||||+|.++..+++......+++|+|+|+.|++.|+++ +.++.+...|+..++++ ++||+|+|+.++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~l 104 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAFL 104 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESCG
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCceEEEEehhh
Confidence 4567999999999999999988643346899999999999999876 45788899999999886 579999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+|+. ++..+|+++.++|||||.+++.++.
T Consensus 105 ~~~~-d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 105 LHMT-TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp GGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCC-CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 7766 7788999999999999999999874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.63 E-value=7.5e-16 Score=143.77 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-CccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|..+..|++.. .+..+|+|+|+|+.|++.|+++ +. .+.+...+.. +++...+|+|+|+.
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~--~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR--HVEIKNASMVILNF 116 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT--TCCCCSEEEEEEES
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhh--ccccccceeeEEee
Confidence 34699999999999999998742 3567999999999999999886 23 4455555544 45557899999999
Q ss_pred cccccc-ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~-~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++++. ++..++|++++|+|||||.++++++..
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 877765 356689999999999999999998654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.62 E-value=8.1e-16 Score=143.76 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=87.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
+++|||||||+|.++..+++++. +|+|+|+|++|++.|+++. .++.+..++...+++ +++||+|+|..+++|+.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-
T ss_pred CCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-
Confidence 45899999999999999998764 7999999999999999884 357888888888876 48899999999988775
Q ss_pred cHHHHHHHHH-hcccCCcEEEEEeCCC
Q 012709 124 KDGILLLEVD-RVLKPGGYFVWTSPLT 149 (458)
Q Consensus 124 ~~~~~L~ei~-RvLkPGG~liis~~~~ 149 (458)
++..+|.++. |+|||||.++++.|..
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 7788999997 8999999999998754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.61 E-value=2.2e-15 Score=142.19 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=84.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecc-c
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR-C 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~-~ 117 (458)
..+++|||||||+|.++..|++++. +++|+|+|++|++.|+++ +.++.+..+|+..++++ ++||+|+|.. +
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhccc-ccccccceeeee
Confidence 3457999999999999999999875 899999999999999876 67899999999988865 6899999863 4
Q ss_pred cccccc--cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQ--KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~--~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.++.. +..++|+++.++|||||.|++...
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 445442 344799999999999999998653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=2.7e-15 Score=137.32 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=85.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+.+|||||||+|..+.+|++++. +++|+|+|+.|++.|+++ +. .+.+...|...+++ +++||+|+|..+++
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGG
T ss_pred CCcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeee
Confidence 35899999999999999999876 899999999999988655 44 46788888888876 58899999999988
Q ss_pred ccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 120 DWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 120 ~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|++.. ...+++++.++|+|||++++....
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 87644 347999999999999999998753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.59 E-value=2.2e-15 Score=143.18 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCC-CCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPY-PSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpf-p~~sFD~I~~~~ 116 (458)
...+|||+|||+|..+..+++.+. .+++|+|+|+.|++.|+++ + .++.+.++|+...++ .+++||+|+|..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 346999999999999999988764 3799999999999999876 2 257788899877766 467899999999
Q ss_pred ccccccccH---HHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKD---GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~---~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++|...+. ..+|+++.|+|||||+|+++.+
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 988875433 3799999999999999999876
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.58 E-value=2.4e-15 Score=135.23 Aligned_cols=104 Identities=9% Similarity=-0.088 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------------CCCeEEEeeccCCCC-C
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------------GLPAMIGSFASKQLP-Y 104 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------------~~~~~~~~~d~~~Lp-f 104 (458)
.++.+|||+|||+|..+.+|+++|+ +|+|+|+|+.|++.|+++ +....+..++...++ .
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 4557999999999999999999887 899999999999999986 223456677777765 3
Q ss_pred CCCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 105 PSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 105 p~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...+||+|++..++++...+ ...+++++.++|||||++++.....
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 45789999999988877643 3479999999999999998876543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=2.2e-14 Score=131.10 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=96.2
Q ss_pred cccceeccccccCc--cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHH
Q 012709 5 EEEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV 82 (458)
Q Consensus 5 ~~~~~~F~~~~~~f--d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i 82 (458)
.++.+.|...+..| +..+...+.+.+.+. .....+|||+|||+|.++..+++.+. +++++|+|+.++
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i 87 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAI 87 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccc
Confidence 35555665554444 233333344444442 23457999999999999999998653 899999999999
Q ss_pred HHHHHc----C---CCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 83 QLTLER----G---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 83 ~~A~er----~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.|+++ + .++.+...|... ++++++||+|+|+.++++.......+++++.++|||||.+++...
T Consensus 88 ~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 88 KLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 999875 2 357788788765 667889999999987555443345789999999999999988654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.3e-14 Score=137.76 Aligned_cols=123 Identities=14% Similarity=-0.042 Sum_probs=86.3
Q ss_pred HHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhc----C-CccceEEEEcCCHHHHHHHHHcC------CCe--
Q 012709 26 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----E-LLTMCIANYEASGSQVQLTLERG------LPA-- 92 (458)
Q Consensus 26 ~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~----~-~~~~~v~gvD~S~~~i~~A~er~------~~~-- 92 (458)
+.+.+.++.....+....+..+|||||||+|.++..+++. . .....++++|+|+.|++.|+++. ..+
T Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~ 101 (280)
T d1jqea_ 22 EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKF 101 (280)
T ss_dssp HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccc
Confidence 3444444433333322333348999999999998887653 1 12346899999999999998761 122
Q ss_pred EEEeeccC------CCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 93 MIGSFASK------QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 93 ~~~~~d~~------~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+...+.+ ..++++++||+|+|.++++|+. ++..+|+++.++|+|||.+++..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 102 AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp EEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cchhhhhhhhcchhcccCCCCceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 23333222 2356789999999999977765 77899999999999999999987644
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4.3e-14 Score=132.26 Aligned_cols=102 Identities=11% Similarity=-0.063 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------------------CCeEEEeeccCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------------LPAMIGSFASKQ 101 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----------------------~~~~~~~~d~~~ 101 (458)
...+|||+|||+|..+.+|+++|+ +|+|+|+|+.+++.|+++. ..+.+.+.|...
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 456999999999999999999887 8999999999999988752 246677777766
Q ss_pred C-CCCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 102 L-PYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 102 L-pfp~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+ +...+.||+|+...+++++..+ ...+++++.++|||||++++....
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 6 4667899999999998888754 357999999999999998887653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.49 E-value=1.3e-13 Score=131.00 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=99.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+.++|||||||+|.++..++++. +..+++++|+ +.+++.++++ + .++.+..+|... +.+ .+||+|+++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchhheeecc
Confidence 445799999999999999999875 6779999998 5678777665 3 367888888644 233 5799999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH-H------------HHHHHHHHHHhhccEEEEee
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ-K------------RWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~-~------------~w~~i~~l~~~~~w~~v~~~ 182 (458)
++++|.+.. .++|++++++|||||++++.+............... . .-+++.+++++.+|+.+...
T Consensus 155 vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 155 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 999887443 378999999999999999998754332211111000 0 12566778889999876543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.2e-14 Score=137.08 Aligned_cols=136 Identities=15% Similarity=0.051 Sum_probs=95.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CC--e---------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP--A--------------------------- 92 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~--~--------------------------- 92 (458)
.+.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++. .. .
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456899999999999888877653 37999999999999998761 11 0
Q ss_pred ----EEEe----eccCCCCCCCCCeeEEEeccccccccc---cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccH---
Q 012709 93 ----MIGS----FASKQLPYPSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--- 158 (458)
Q Consensus 93 ----~~~~----~d~~~Lpfp~~sFD~I~~~~~l~~~~~---~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~--- 158 (458)
.... .+....+++.++||+|++.++++|... +...+++++.|+|||||++++.++...........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 0111 112234678899999999999888864 34479999999999999999998755321110000
Q ss_pred HHHHHHHHHHHHHHhhccEEEEe
Q 012709 159 ENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 159 e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
......+.+++++++.+|+++..
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEEE
Confidence 00112367788899999987664
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=5e-14 Score=134.79 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=92.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
.+..+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++ +++..+..++... .++.++||+|+++..
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~- 193 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY- 193 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-
T ss_pred CccCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccc-
Confidence 3457999999999999999988764 899999999999998865 6778888777654 356789999998743
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.+ ....++.++.++|||||++++++... ..-+.+.+.+++.+|+.+...
T Consensus 194 ~~---~l~~l~~~~~~~LkpGG~lilSgil~------------~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 194 AE---LHAALAPRYREALVPGGRALLTGILK------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp HH---HHHHHHHHHHHHEEEEEEEEEEEEEG------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred cc---cHHHHHHHHHHhcCCCcEEEEEecch------------hhHHHHHHHHHHCCCEEEEEE
Confidence 22 23568899999999999999987521 112456677778888877644
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=1.4e-13 Score=129.73 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=109.6
Q ss_pred ccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEE
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMI 94 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~ 94 (458)
|-..+.+...++..+....+.+. ..++.+|||+|||+|.++.++++.+ +...|+|+|+|+.|++.|+++ ..+...
T Consensus 49 ~r~w~p~rsklaA~i~~gl~~l~-ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~ 126 (230)
T d1g8sa_ 49 YRIWNPNKSKLAAAIIKGLKVMP-IKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIP 126 (230)
T ss_dssp EEECCTTTCHHHHHHHTTCCCCC-CCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEE
T ss_pred eeeECCCccHHHHHHHhhHHhCC-CCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccce
Confidence 43345566677776655444333 3445799999999999999999864 677999999999999998876 234555
Q ss_pred EeeccCCC-CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHh
Q 012709 95 GSFASKQL-PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVEN 173 (458)
Q Consensus 95 ~~~d~~~L-pfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~ 173 (458)
...+.... ++.+..+|++++... ++...+...++.++.++|||||+++++......... .......++..+.++.
T Consensus 127 i~~d~~~~~~~~~~~~~v~~i~~~-~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~---~~~~~~~~e~~~~L~~ 202 (230)
T d1g8sa_ 127 ILGDANKPQEYANIVEKVDVIYED-VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT---KDPKEIFKEQKEILEA 202 (230)
T ss_dssp EECCTTCGGGGTTTCCCEEEEEEC-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS---SCHHHHHHHHHHHHHH
T ss_pred EEEeeccCcccccccceeEEeecc-ccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC---CCHHHHHHHHHHHHHH
Confidence 55555443 355666777666544 444456778999999999999999998753321111 1122335566777788
Q ss_pred hccEEEEee
Q 012709 174 LCWELVSQQ 182 (458)
Q Consensus 174 ~~w~~v~~~ 182 (458)
.+|+.+...
T Consensus 203 aGF~ive~i 211 (230)
T d1g8sa_ 203 GGFKIVDEV 211 (230)
T ss_dssp HTEEEEEEE
T ss_pred cCCEEEEEe
Confidence 899888654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=7.8e-14 Score=135.97 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=83.0
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEec
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
..++.+|||||||.|.++.+++++. +++++|+++|++|++.|+++ +. .+.+...| .++++++||.|+|.
T Consensus 59 l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---~~~~~~~fD~i~si 133 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEFDEPVDRIVSL 133 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGCCCCCSEEEEE
T ss_pred CCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---ccccccccceEeec
Confidence 3456799999999999999998753 35999999999999988776 43 34444444 34667899999999
Q ss_pred ccccccccc--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQK--------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.++.|+.+. -..+++++.|+|||||++++.+...
T Consensus 134 e~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 134 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp SCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred hhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 999998742 3589999999999999999987643
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=5.3e-14 Score=136.28 Aligned_cols=101 Identities=20% Similarity=0.369 Sum_probs=76.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-----CeEEEeeccCC----CCCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-----PAMIGSFASKQ----LPYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-----~~~~~~~d~~~----Lpfp~~sF 109 (458)
.+.++|||+|||+|.++..|+++|. +|+|+|+|+.|++.|+++ +. ...+..++... +| +.++|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 130 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGF 130 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCc
Confidence 3457999999999999999999875 899999999999999876 22 23344444322 23 34689
Q ss_pred eEEEecc-ccccccc------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCAR-CGVDWDQ------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~-~l~~~~~------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|+|.. ++.|+.. +...+|+++.|+|||||+|++...
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 9999864 5566542 244799999999999999999764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.45 E-value=3.9e-13 Score=121.97 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||+|||+|.++..+++.+. +|+++|+++.+++.|+++ + .++.+..+|+...+++...||.|++..
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 4567999999999999999988643 899999999999999886 4 378899999888877888999999986
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
... ....++.++.+.|||||++++...
T Consensus 109 ~~~----~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 109 SGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp CTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccc----cchHHHHHHHHHhCcCCEEEEEee
Confidence 533 345689999999999999998764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=2.6e-13 Score=131.40 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||||||.|.++.+++++. +.+|+|+|+|++|++.|+++ +. .+.+...|...+ +++||.|+|..
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~ 125 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIE 125 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEES
T ss_pred CCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhh
Confidence 456799999999999999998763 34899999999999998876 33 344554554443 37899999999
Q ss_pred cccccccc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++.|+... -..+|+++.++|||||++++.+.
T Consensus 126 ~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 126 AFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 99998743 36799999999999999999764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=9e-14 Score=130.36 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccC--CCCCCCCCeeEEEe---
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASK--QLPYPSLSFDMLHC--- 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~--~Lpfp~~sFD~I~~--- 114 (458)
.+++|||||||+|..+.++++.+ ..+++++|+|+.|++.|+++. .++.+...++. ..++++++||.|+.
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 34699999999999999999864 348999999999999998873 34445544433 33678899999983
Q ss_pred --ccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 115 --ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 115 --~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
...+.|+. +...+++++.|+|||||+|++..
T Consensus 131 ~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccc-CHHHHHHHHHHHcCCCcEEEEEe
Confidence 44444444 56689999999999999998854
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2.4e-13 Score=132.13 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=84.6
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
..++.+|||||||.|.++.++++.. +++|+|+++|+.|++.|+++ + ..+.+...|...++ ++||.|++.
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si 134 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSI 134 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEE
T ss_pred CCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeee
Confidence 3456899999999999999988763 46999999999999999876 2 35677777776664 679999999
Q ss_pred cccccccc-cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.++.|+.. +-..+++++.|+|||||++++.+.
T Consensus 135 ~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 135 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 99999863 346899999999999999998765
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.43 E-value=6.5e-13 Score=126.73 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+.++|||||||+|.++..++++. |..+++++|+ +.+++.|+++ + .++.+...|... +.| .+||+|++.+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 345799999999999999999974 6789999998 7788877665 3 356677776543 444 4599999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCccccccc-HHH-H------------HHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN-KEN-Q------------KRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~-~e~-~------------~~w~~i~~l~~~~~w~~v~~ 181 (458)
++++|.+.. .++|++++++|||||++++.+........... ... . ...+++.+++++.+|+.+..
T Consensus 156 vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~ 235 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 235 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEE
Confidence 999997543 37899999999999999999864311110000 000 0 01356788899999988765
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
+
T Consensus 236 ~ 236 (256)
T d1qzza2 236 R 236 (256)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=6.8e-13 Score=127.35 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=87.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--------CCCeEEEeeccCCCCCCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------GLPAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--------~~~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
.++.+|||+|||+|+++.+|++.-.+..+++++|+++++++.|+++ ..++.+...|....++++++||.|++
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l 174 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 174 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE
Confidence 4567999999999999999998755678999999999999999875 23788899999889999999999985
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+.+ +|..++.++.++|||||++++..|..
T Consensus 175 -----dlp-~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 175 -----DML-APWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp -----ESS-CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred -----ecC-CHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 333 56679999999999999999998743
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=1.5e-12 Score=120.46 Aligned_cols=99 Identities=13% Similarity=0.224 Sum_probs=83.6
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARCG 118 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~~l 118 (458)
..|||||||+|.++..|+++. |...++|+|+++.++..|.++ ++ ++.+..+|+..+. ++++++|.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp- 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence 379999999999999999974 778999999999999887655 44 6889999988775 88999999998865
Q ss_pred ccccccH--------HHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKD--------GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~--------~~~L~ei~RvLkPGG~liis~ 146 (458)
.+|+... ..+|.++.|+|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5555432 369999999999999999975
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4e-13 Score=128.54 Aligned_cols=138 Identities=16% Similarity=0.080 Sum_probs=95.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CC-----------------------------
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP----------------------------- 91 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~----------------------------- 91 (458)
..+.+|||||||+|.+....+..... +|+++|+|+.|++.++++- ..
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 35679999999999887766655543 8999999999999998651 00
Q ss_pred ----eEEEeeccC------CCCCCCCCeeEEEecccccccccc---HHHHHHHHHhcccCCcEEEEEeCCCCcccccccH
Q 012709 92 ----AMIGSFASK------QLPYPSLSFDMLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK 158 (458)
Q Consensus 92 ----~~~~~~d~~------~Lpfp~~sFD~I~~~~~l~~~~~~---~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~ 158 (458)
......|.. ..+++.++||+|+|.+|+++...+ ...+++++.++|||||+|++.+............
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 011222322 223556789999999998888754 3578999999999999999988755321111000
Q ss_pred ---HHHHHHHHHHHHHHhhccEEEEee
Q 012709 159 ---ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 159 ---e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
...-..+++.++++..+++.+.-+
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 001124678888999999877543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.35 E-value=9.7e-13 Score=122.06 Aligned_cols=118 Identities=20% Similarity=0.078 Sum_probs=84.0
Q ss_pred HHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccC
Q 012709 24 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASK 100 (458)
Q Consensus 24 ~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~ 100 (458)
+...++..+... ..+ ...++.+|||+|||+|.++.+|++.. +..+|+|+|+|+.|++.|+++ ..++.+...+..
T Consensus 38 ~rsklaa~i~~g-~~l-~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~ 114 (209)
T d1nt2a_ 38 WRSKLAAMILKG-HRL-KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS 114 (209)
T ss_dssp GGCHHHHHHHTS-CCC-CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT
T ss_pred cchHHHHHHhcc-ccC-CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeecc
Confidence 344555544322 222 23445799999999999999999864 556899999999999988765 346778888777
Q ss_pred CCCCCCC---CeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 101 QLPYPSL---SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 101 ~Lpfp~~---sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.... .+|+|++. +.|. .+...+++++.++|||||+++++..
T Consensus 115 ~~~~~~~~~~~vd~v~~~--~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 115 KPWKYSGIVEKVDLIYQD--IAQK-NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CGGGTTTTCCCEEEEEEC--CCST-THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccccceEEEEEec--ccCh-hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 6654444 45555443 2333 3556899999999999999999864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=2.5e-12 Score=122.52 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||+|||+|.++.+|++.-.+..+|+++|.++++++.|+++ ..++.+...|.... +++++||.|++.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld- 161 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD- 161 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC-
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec-
Confidence 4557999999999999999998644567999999999999999886 13678888887765 567899999864
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ ++..++.++.++|||||++++..|
T Consensus 162 ----~p-~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 162 ----IP-DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp ----CS-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ----CC-chHHHHHHHHHhcCCCceEEEEeC
Confidence 22 455689999999999999999887
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=2.2e-12 Score=119.89 Aligned_cols=97 Identities=14% Similarity=0.002 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||||||+|.++..|++...+...|+++|+++.+++.|+++ + .++.+..+|.....+.+++||+|++..+
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 4567999999999999999988654567899999999999999886 2 3677778888777777789999999987
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+.+ .++.+.|||||++++..
T Consensus 154 ~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 154 VDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp BSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred HHHhH-------HHHHHhcCCCcEEEEEE
Confidence 66654 24678899999999854
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.32 E-value=1.4e-11 Score=113.79 Aligned_cols=99 Identities=16% Similarity=0.275 Sum_probs=83.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARCG 118 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~~l 118 (458)
..|||||||+|.++..+++.. |...++|+|+++.++..|.++ ++ ++.+..+|+..+. ++++++|.|++.+.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP- 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS- 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-
Confidence 479999999999999999975 678999999999999887654 44 6888999888775 78899999998764
Q ss_pred ccccccH--------HHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKD--------GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~--------~~~L~ei~RvLkPGG~liis~ 146 (458)
.+|+... ..+|+++.|+|||||.|.+++
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5665432 468999999999999999876
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=1e-11 Score=116.51 Aligned_cols=157 Identities=12% Similarity=0.030 Sum_probs=102.7
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeE
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAM 93 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~ 93 (458)
.|-..+.+...++..+....+.+. ..++.+|||+|||+|.++.+|++.-.+...|+++|+|+.|++.++++. .+..
T Consensus 47 e~R~w~p~rSKlaa~i~~~l~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~ 125 (227)
T d1g8aa_ 47 EYRIWNPNRSKLGAAIMNGLKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125 (227)
T ss_dssp EEEECCTTTCHHHHHHHTTCCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEE
T ss_pred eEEEECCCccHHHHHHHccccccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCce
Confidence 343345556666766654444333 345579999999999999999987446779999999999999987762 2344
Q ss_pred EEeeccCC---CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHH
Q 012709 94 IGSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 170 (458)
Q Consensus 94 ~~~~d~~~---Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l 170 (458)
....+... .+.....+|+|++.. . .......++.++.++|||||+++++....... ....++ ...++++.+
T Consensus 126 ~i~~d~~~~~~~~~~~~~vD~i~~d~--~-~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~-~~~~~~--~v~~~v~~l 199 (227)
T d1g8aa_ 126 PILGDATKPEEYRALVPKVDVIFEDV--A-QPTQAKILIDNAEVYLKRGGYGMIAVKSRSID-VTKEPE--QVFREVERE 199 (227)
T ss_dssp EEECCTTCGGGGTTTCCCEEEEEECC--C-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-TTSCHH--HHHHHHHHH
T ss_pred EEEEECCCcccccccccceEEEEEEc--c-ccchHHHHHHHHHHhcccCCeEEEEEECCccC-CCCCHH--HHHHHHHHH
Confidence 55555433 334457899998752 2 33455679999999999999999986422111 111122 223444444
Q ss_pred HHhhccEEEEe
Q 012709 171 VENLCWELVSQ 181 (458)
Q Consensus 171 ~~~~~w~~v~~ 181 (458)
.+ .+|+.+..
T Consensus 200 ~~-~gf~iie~ 209 (227)
T d1g8aa_ 200 LS-EYFEVIER 209 (227)
T ss_dssp HH-TTSEEEEE
T ss_pred HH-cCCEEEEE
Confidence 43 47777654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9.3e-12 Score=116.50 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C------CCeEEEeeccCCCCCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G------LPAMIGSFASKQLPYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~------~~~~~~~~d~~~Lpfp~~sFD~I 112 (458)
.++.+|||||||+|..+..|++...+..+|+++|.++++++.|+++ + .++.+..+|....+.++++||+|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I 154 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 154 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence 4557999999999999999988644567999999999999998765 1 35678888888877788899999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++..++.+.+ .++.+.|||||++++...
T Consensus 155 ~~~~~~~~ip-------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 155 HVGAAAPVVP-------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp EECSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred hhhcchhhcC-------HHHHhhcCCCcEEEEEEc
Confidence 9998765543 257789999999999653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=3.5e-11 Score=115.44 Aligned_cols=119 Identities=20% Similarity=0.153 Sum_probs=88.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||+|||+|.++.+|++...+..+++++|+++.+++.|+++ +. .+.+...|.. ..++...||.|+.
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~-~~~~~~~~D~V~~-- 178 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-EGFDEKDVDALFL-- 178 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG-GCCSCCSEEEEEE--
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc-ccccccceeeeEe--
Confidence 4567999999999999999998755677999999999999999887 32 4455555532 3466788999874
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+.+ ++..++.++.++|||||++++..|.. ...+++.+.++..+|..+.
T Consensus 179 ---d~p-~p~~~l~~~~~~LKpGG~lv~~~P~~------------~Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 179 ---DVP-DPWNYIDKCWEALKGGGRFATVCPTT------------NQVQETLKKLQELPFIRIE 226 (266)
T ss_dssp ---CCS-CGGGTHHHHHHHEEEEEEEEEEESSH------------HHHHHHHHHHHHSSEEEEE
T ss_pred ---cCC-CHHHHHHHHHhhcCCCCEEEEEeCcc------------cHHHHHHHHHHHCCceeEE
Confidence 333 56779999999999999999988732 1223444445556775543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=2.7e-11 Score=119.10 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=77.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
.++|||||||+|.++..++++|.. +|+++|.|+ +++.|+++ + ..+.+..++...+++++++||+|+|..+.
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 469999999999999999998753 899999997 44555443 3 36788899999999999999999997554
Q ss_pred cccc--ccHHHHHHHHHhcccCCcEEE
Q 012709 119 VDWD--QKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 119 ~~~~--~~~~~~L~ei~RvLkPGG~li 143 (458)
.... .....++.++.|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 4333 345578899999999999985
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.5e-11 Score=116.56 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH---HcC--CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ERG--LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~---er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+.++|||||||+|.++..+++.|.. +|+++|.|+.+...++ +++ ..+.+..++...++++.++||+|+|....
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 3569999999999999999998753 8999999998865432 223 36888999999999999999999996544
Q ss_pred ccccc--cHHHHHHHHHhcccCCcEEEE
Q 012709 119 VDWDQ--KDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 119 ~~~~~--~~~~~L~ei~RvLkPGG~lii 144 (458)
+.... ....++....++|||||+++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 44332 234677778899999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.5e-11 Score=121.38 Aligned_cols=102 Identities=12% Similarity=-0.000 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--------------CCCeEEEeeccCCCCCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------------GLPAMIGSFASKQLPYPSLS 108 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--------------~~~~~~~~~d~~~Lpfp~~s 108 (458)
....+|||+|||+|.++..++... +..+++|+|+|+.+++.|+++ ..++.+..+|+..+++.+..
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence 345799999999999999988753 345799999999999988653 24688999999988877655
Q ss_pred e--eEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 109 F--DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 109 F--D~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
| |+|+++. +.+.. +....|.|+.|+|||||+++...+
T Consensus 229 ~~advi~~~~-~~f~~-~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 229 ANTSVIFVNN-FAFGP-EVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp HHCSEEEECC-TTTCH-HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred CcceEEEEcc-eecch-HHHHHHHHHHHhCCCCcEEEEecc
Confidence 5 6777653 45443 566899999999999999988654
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.4e-11 Score=116.15 Aligned_cols=101 Identities=18% Similarity=0.083 Sum_probs=78.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------------CCCeEEEeeccCCCC--C
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------------GLPAMIGSFASKQLP--Y 104 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------------~~~~~~~~~d~~~Lp--f 104 (458)
.++.+|||+|||+|.++.+|++.-.+..+|+++|+++++++.|+++ ..++.+...|..... +
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 4567999999999999999998755677999999999999999875 125777877776553 4
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 105 PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 105 p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.+||.|+. +++ +|..++.++.++|||||+|++..|..
T Consensus 177 ~~~~fD~V~L-----D~p-~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 177 KSLTFDAVAL-----DML-NPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ----EEEEEE-----CSS-STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred CCCCcceEee-----cCc-CHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 6678999985 333 44568999999999999999988743
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=9.2e-11 Score=114.75 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHH---HHHcCC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~---A~er~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.++|||||||+|.++..+++.|.. +|+++|.|+.+... +..++. ++.+..++...++++.++||+|+|..+..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468999999999999999998743 79999999865332 223343 58899999999999999999999875533
Q ss_pred ccc--ccHHHHHHHHHhcccCCcEEEE
Q 012709 120 DWD--QKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 120 ~~~--~~~~~~L~ei~RvLkPGG~lii 144 (458)
... .....++..+.|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 332 2356789999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.11 E-value=8.5e-11 Score=109.93 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+..+|||||||+|.++..|++... +|+++|+++.+++.|+++ ..++.+..+|......+.++||.|++..+..
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP 145 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred cccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchh
Confidence 4557999999999999999988753 899999999999999876 3477888887655444557899999987755
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+ ..+.+.|||||++++-.
T Consensus 146 ~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 146 TLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp SCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhh-------HHHHHhcCCCCEEEEEE
Confidence 543 24567899999999854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=6.8e-10 Score=106.67 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=90.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|..+..++... +..+++++|+|+.+++.|+++ +. ++.+...|... ++++++||+|+|+--
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPP 184 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCC
T ss_pred ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCCceeEEEecch
Confidence 344689999999999999998864 678999999999999999877 54 57888887544 456779999999843
Q ss_pred cccccc------------------------cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHh
Q 012709 118 GVDWDQ------------------------KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVEN 173 (458)
Q Consensus 118 l~~~~~------------------------~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~ 173 (458)
.+.-.+ ...+++.++.+.|+|||.+++..... ..+.+.+++.+
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~-------------q~~~v~~~l~~ 251 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-------------QGEAVRQAFIL 251 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-------------CHHHHHHHHHH
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch-------------HHHHHHHHHHH
Confidence 322110 01257889999999999999954211 12456677777
Q ss_pred hccEEE
Q 012709 174 LCWELV 179 (458)
Q Consensus 174 ~~w~~v 179 (458)
.+|..+
T Consensus 252 ~gf~~i 257 (274)
T d2b3ta1 252 AGYHDV 257 (274)
T ss_dssp TTCTTC
T ss_pred CCCCeE
Confidence 777644
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=8.4e-10 Score=111.43 Aligned_cols=103 Identities=13% Similarity=0.018 Sum_probs=71.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----------C---CeEEE-eeccCCCCCCC-
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------L---PAMIG-SFASKQLPYPS- 106 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----------~---~~~~~-~~d~~~Lpfp~- 106 (458)
++..+|||||||+|..+..++... +..+++|+|+|+.|++.|+++. . ...+. ..+....++.+
T Consensus 215 kpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~ 293 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 293 (406)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccc
Confidence 455799999999999999998763 2347999999999999998751 1 12221 22222221111
Q ss_pred --CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 107 --LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 107 --~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
..+|+|+++. +++ ..+....|.++.|+|||||+++.+...
T Consensus 294 ~~~~adVV~inn-~~f-~~~l~~~L~ei~r~LKPGGrIVs~~~~ 335 (406)
T d1u2za_ 294 LIPQCDVILVNN-FLF-DEDLNKKVEKILQTAKVGCKIISLKSL 335 (406)
T ss_dssp HGGGCSEEEECC-TTC-CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccccceEEEEec-ccC-chHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 3468888763 344 345668999999999999999987643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.91 E-value=1e-08 Score=97.46 Aligned_cols=126 Identities=7% Similarity=0.108 Sum_probs=89.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+.+|||+|||+|.++..+++++. .+|+++|+++.+++.++++ ++ .+.+..+|+..++. .+.||.|++...
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 457999999999999999998753 4899999999999998776 43 57888888887754 478999997632
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
+ ....++.++.++|+|||.+.+......... .....+.+.+.+...+++......
T Consensus 184 --~---~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~------~~~~~e~~~~~~~~~g~~v~~~~~ 238 (260)
T d2frna1 184 --V---RTHEFIPKALSIAKDGAIIHYHNTVPEKLM------PREPFETFKRITKEYGYDVEKLNE 238 (260)
T ss_dssp --S---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------TTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred --C---chHHHHHHHHhhcCCCCEEEEEeccccccc------hhhHHHHHHHHHHHcCCceEEEEE
Confidence 1 223578889999999999977653221100 011124455667677776654433
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=1.2e-09 Score=101.74 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcC-----CccceEEEEcCCHHHHHHHHHc----------CCCeEEEeeccCCCCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKE-----LLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQLPYPSL 107 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~-----~~~~~v~gvD~S~~~i~~A~er----------~~~~~~~~~d~~~Lpfp~~ 107 (458)
.+..+|||||||+|+++..|++.. .+..+|+++|.++++++.|+++ ..++.+..+|......+.+
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 345799999999999998887642 1234799999999999999765 1367888888877666678
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.||.|++..+..+.+ . .+.+.|||||++++...
T Consensus 159 ~fD~Iiv~~a~~~~p---~----~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTP---T----ELINQLASGGRLIVPVG 191 (223)
T ss_dssp SEEEEEECSCBSSCC---H----HHHHTEEEEEEEEEEES
T ss_pred ceeeEEEEeechhch---H----HHHHhcCCCcEEEEEEe
Confidence 899999987755443 2 46789999999988653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.86 E-value=7.2e-09 Score=94.13 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCCch----hHHHHhhc---CCccceEEEEcCCHHHHHHHHHc--------CCC----------------
Q 012709 43 AGVRTILDIGCGYGS----FGAHLFSK---ELLTMCIANYEASGSQVQLTLER--------GLP---------------- 91 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~----~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er--------~~~---------------- 91 (458)
.+.-+|+++|||+|. ++..+... .....+|+|+|+++.+++.|++- ..+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 344699999999995 44444332 11245799999999999999753 000
Q ss_pred ------------eEEEeeccCC-CCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEe
Q 012709 92 ------------AMIGSFASKQ-LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 92 ------------~~~~~~d~~~-Lpfp~~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+...+... .+.+.+.||+|+|.++++.+.... .++++.+.+.|+|||+|++..
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 1112122111 123457899999999988887543 489999999999999988854
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.85 E-value=4e-09 Score=99.52 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=92.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+.++|||||||+|.++..++++. |..+++..|. +..++.+.. ..++.+..+|..+ +.| ..|++++.+++++|.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~-~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh~~~ 153 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-LSGIEHVGGDMFA-SVP--QGDAMILKAVCHNWS 153 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-CTTEEEEECCTTT-CCC--CEEEEEEESSGGGSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhhhccCC-CCCeEEecCCccc-ccc--cceEEEEehhhhhCC
Confidence 456799999999999999999975 7889999998 444432221 2467787777643 444 359999999999998
Q ss_pred ccHH-HHHHHHHhcccCCcEEEEEeCCCCcccccccHH-HH---------------HHHHHHHHHHHhhccEEEE
Q 012709 123 QKDG-ILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE-NQ---------------KRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 123 ~~~~-~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e-~~---------------~~w~~i~~l~~~~~w~~v~ 180 (458)
++.. ++|+++++.|+|||++++.+............. .. ...++..+++++.+|+.+.
T Consensus 154 de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 154 DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 5433 799999999999999999986432111111000 00 0135677888888887664
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.83 E-value=8.3e-09 Score=94.25 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=60.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+++|||+|||+|.++..++.++. .+|+++|+++.+++.|+++...+.+...|...++ ++||+|+|+--
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCcc
Confidence 457999999999999988888764 3799999999999999999888999999988764 67999999843
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=7.6e-09 Score=95.79 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||||||+|+.++.|++.. ..+|+++|.++.+++.|+++ + .++.+..+|......+.+.||.|++..+
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a 154 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAG 154 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred CccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecc
Confidence 445799999999999999988752 23699999999999999876 3 4788898888776556688999999876
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
..+.+ . .+...|||||++++..
T Consensus 155 ~~~ip---~----~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 155 APKIP---E----PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp BSSCC---H----HHHHTEEEEEEEEEEE
T ss_pred cccCC---H----HHHHhcCCCCEEEEEE
Confidence 55443 3 2456799999999864
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.74 E-value=8.7e-09 Score=100.77 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC----CCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~----Lpfp~~sFD~I~~ 114 (458)
..++|||++||+|.++.+++.. ..+|+++|+|+.+++.|+++ ++ ++.+..+|... ++...++||+|++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 3469999999999999998863 34899999999999999876 54 57788777544 3445578999998
Q ss_pred ccccccc--------cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDW--------DQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~--------~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.--...- ......++..+.++|||||.++++....
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 5321111 1112357889999999999999987643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=1.1e-08 Score=100.09 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC----CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ----LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~----Lpfp~~sFD~I~ 113 (458)
+..+|||+|||+|.++..++..|. .+|+++|+|+.+++.|+++ ++ ++.+..+|+.. ++....+||+|+
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 456999999999999999998764 3899999999999998876 44 46777777543 234567899999
Q ss_pred eccccccccc--------cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l~~~~~--------~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+.--...-.. .-.+++..+.++|+|||.|+++....
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 8532111110 11357888999999999999988643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.69 E-value=1.7e-08 Score=89.96 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCC----CCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ----LPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~----Lpfp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..+++++. +++++|.++.+++.++++ +....+...+... ......+||+|++.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 346999999999999999998875 788999999999998776 5555555554432 23455789999986
Q ss_pred cccccccccHHHHHHHH--HhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei--~RvLkPGG~liis~~ 147 (458)
-. +..+....+.++ ..+|+|||.+++..+
T Consensus 118 PP---Y~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 118 PP---YAMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CC---TTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cc---cccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 43 111222334443 358999999988654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.67 E-value=1e-08 Score=89.42 Aligned_cols=99 Identities=10% Similarity=0.107 Sum_probs=73.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++...+.+|.. +|+++|.++.+++.++++ +. ++.+..+|+.. +....++||+|++.-
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 4569999999999999999988864 999999999999988776 33 46777777655 345568899999863
Q ss_pred ccccccc-cHHHHHHHH--HhcccCCcEEEEEeC
Q 012709 117 CGVDWDQ-KDGILLLEV--DRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei--~RvLkPGG~liis~~ 147 (458)
- +.. .....+..+ .++|+|||.+++...
T Consensus 92 P---y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 P---YAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp S---SHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h---hccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 211 122455544 367999999998654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.65 E-value=5.5e-08 Score=91.48 Aligned_cols=132 Identities=11% Similarity=0.087 Sum_probs=93.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..+|||||||+|.++..++++. |..+++..|. +..++.+.. ..++.+..+|... +.+ .+|++++.+++++|.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWT 152 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSC
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCC
Confidence 455799999999999999999874 7889999998 444544432 3478888888754 333 579999999999998
Q ss_pred ccHH-HHHHHHHhcccCC---cEEEEEeCCCCcccccccHHH---------------HHHHHHHHHHHHhhccEEEE
Q 012709 123 QKDG-ILLLEVDRVLKPG---GYFVWTSPLTNPQAFLRNKEN---------------QKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 123 ~~~~-~~L~ei~RvLkPG---G~liis~~~~~~~~~~~~~e~---------------~~~w~~i~~l~~~~~w~~v~ 180 (458)
++.. ++|+++++.|+|| |++++.+.............. ....++.++++++.+|+.+.
T Consensus 153 d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~ 229 (244)
T d1fp2a2 153 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 229 (244)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEE
Confidence 6543 7999999999998 778888754321110000000 00135677788888887765
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=1.2e-07 Score=86.35 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+.+|||+|||+|.++..++.++. .+|+++|+++.+++.|+++ +....+...|...+ ++.||+|+++--
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP 118 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPP 118 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCc
Confidence 456999999999999999888764 3899999999999999876 56778888877665 367999999854
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.59 E-value=4.3e-08 Score=92.00 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+.++|||||||+|.++..++++. |..+++..|..+ .++.+.+ ..++.+...|... +.|. .|+++...++++|.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~ 153 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIEDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWS 153 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTTTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhhhccc-CCceEEecccccc-cCCC--cceEEEEEEeecCC
Confidence 446799999999999999999975 788999999854 3333322 3467777777643 4453 46677788888887
Q ss_pred cc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 123 QK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 123 ~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++ ...+|+++++.|+|||++++.+..
T Consensus 154 d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 154 DEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp HHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 53 338999999999999999998764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.58 E-value=6.6e-09 Score=94.10 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=70.4
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccCC
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 387 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~ 387 (458)
.|||+|||+|.|+..|. . ++-+|-+ ..+.++-+|++ -.+....+.++..+.+||+|++.+++... .
T Consensus 39 ~vLDiGcG~G~~~~~~~--~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~---~ 105 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLK--I-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFV---D 105 (208)
T ss_dssp CEEEETCTTSTTHHHHT--C-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGS---S
T ss_pred eEEEECCCCcccccccc--e-------EEEEeCChhhccccccccc-ccccccccccccccccccccccccccccc---c
Confidence 59999999999999987 2 2334443 77778888874 35566667777777999999999999887 3
Q ss_pred CCCCcchhhhhhcccccCCceEEEe
Q 012709 388 HRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 388 ~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+...+|-|+-|+|+|||.+++.
T Consensus 106 ---d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 106 ---DPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---ccccchhhhhhcCCCCceEEEE
Confidence 3678899999999999999985
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.55 E-value=4.3e-08 Score=95.74 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCC----CCCCCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ----LPYPSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~----Lpfp~~sFD~I 112 (458)
.+++|||+.||+|.++.+++..+. .+|+++|+|+.+++.|+++ ++ ++.+..+|+.. +.-..++||+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 356999999999999999887654 3799999999999998876 33 46788887633 22244689999
Q ss_pred Eecccc--------ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCG--------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l--------~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++---. .....+-..++..+.++|+|||.++++....
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 984211 1111123368889999999999999988643
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.52 E-value=8.3e-08 Score=88.45 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC------CCCCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL------PYPSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L------pfp~~sFD 110 (458)
..+++|||+|||+|..+..+++.-.+..+++++|.++.+++.|+++ +. ++.+..+++... .+..++||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 3457999999999999999987533457999999999999998765 44 578888776442 24557899
Q ss_pred EEEecccccccccc--HHHHHHHHHhcccCCcEEEE
Q 012709 111 MLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 111 ~I~~~~~l~~~~~~--~~~~L~ei~RvLkPGG~lii 144 (458)
+|+.-. .... ....+.+..++|||||.+++
T Consensus 135 ~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 135 MVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeecc----cccccccHHHHHHHhCccCCCcEEEE
Confidence 999753 2222 22457788899999997655
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.2e-07 Score=83.15 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEe
Q 012709 23 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGS 96 (458)
Q Consensus 23 ~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~ 96 (458)
.|.+.+.+.+... ........++||+|||+|..+..|+.+. +..+++|+|+|+.+++.|+++ ++ ++.+..
T Consensus 43 ~~~~~i~~l~~~~---~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~ 118 (250)
T d2h00a1 43 NYIHWVEDLIGHQ---DSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK 118 (250)
T ss_dssp HHHHHHHHHHCCC---CGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHhhhh---ccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeee
Confidence 3445555554321 1123445699999999999999998864 577999999999999999887 33 344444
Q ss_pred eccCCC------CCCCCCeeEEEeccccc
Q 012709 97 FASKQL------PYPSLSFDMLHCARCGV 119 (458)
Q Consensus 97 ~d~~~L------pfp~~sFD~I~~~~~l~ 119 (458)
.+.... ...+++||+|+|+--++
T Consensus 119 ~~~~~~~~~~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 119 VPQKTLLMDALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp CCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred eccHHhhhhhhhhcccCceeEEEecCccc
Confidence 332221 23456899999986544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=1.6e-07 Score=85.17 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCC-----CCCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL-----PYPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~L-----pfp~~sFD~I~ 113 (458)
....++||++||+|..+..++++. +..+++|+|.++.|++.|+++ +.++.+..++...+ .+..++||.|+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl 100 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 100 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceee
Confidence 345699999999999999999874 678999999999999999887 44677887766553 24457899998
Q ss_pred ecccc--cccc------ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCG--VDWD------QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l--~~~~------~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-... .++. ......|..+.++|+|||.+++...
T Consensus 101 ~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 101 MDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp EECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred eccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 54221 1111 1223688999999999999999875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.43 E-value=1.4e-07 Score=91.58 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC----CCCCCCeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL----PYPSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L----pfp~~sFD~I 112 (458)
...+|||++||+|.++.+++..+. +|+++|.|+.+++.|+++ +. ++.+...|+... ....+.||+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 456999999999999999998764 899999999999999876 33 477888876432 1234789999
Q ss_pred Eeccccc-------cc--cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGV-------DW--DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~-------~~--~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++.--.+ .+ ..+...++..+.++|+|||.+++...
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 9842111 11 12223566778899999997666554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.6e-07 Score=84.39 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=77.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCC-C-----CCCCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQ-L-----PYPSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~-L-----pfp~~sFD 110 (458)
.++++|||||||+|..+.+++..-....+++.+|.++...+.|++. + ..+.+..+++.. + ....++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 4568999999999999999987533357999999999999998876 3 357777776533 1 13457899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+.-. ....-...+..+.++|+|||.+++-..
T Consensus 138 ~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 138 VAVVDA----DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEEECS----CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 999652 333445688999999999999998654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.36 E-value=9.3e-07 Score=85.72 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=76.4
Q ss_pred CCCCEEEEECCCCchhHHHHhh----cCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~----~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
....+|||.|||+|.+...+.. ......+++|+|+++.+++.|+.+ +....+...+.... .+...||+|++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-ccccccccccc
Confidence 3456899999999999888753 334456899999999999988755 56666666664433 34578999999
Q ss_pred cccccccccc-----------------HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 115 ARCGVDWDQK-----------------DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 115 ~~~l~~~~~~-----------------~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+--+...... ...++..+.+.|+|||++++..|.
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 8543211110 113688899999999999998873
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=1.5e-06 Score=77.73 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=72.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l 118 (458)
..+|||++||+|.++...+++|.. +|+.+|.++.+++.++++ +. +..+...|+.. +......||+|++.--
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP- 120 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 120 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred hhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCc-
Confidence 358999999999999999999864 899999999999988876 22 55666666443 2345678999998643
Q ss_pred ccccc-cHHHHHHHHH--hcccCCcEEEEEe
Q 012709 119 VDWDQ-KDGILLLEVD--RVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~-~~~~~L~ei~--RvLkPGG~liis~ 146 (458)
+.. ....++..+. .+|+++|.+++..
T Consensus 121 --Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 121 --FRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp --SSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --cccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 222 2345555554 4799999999864
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=1.1e-07 Score=91.01 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=70.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch----hhhccccccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~----~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-.|||+|||.||||..+.++ .++-|.-|... ++++. .+.+.|+......-+.-+...|.+||.|-+.++|.+.
T Consensus 54 ~~VLDiGCG~G~~a~~~a~~-~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~ 130 (280)
T d2fk8a1 54 MTLLDIGCGWGTTMRRAVER-FDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 130 (280)
T ss_dssp CEEEEESCTTSHHHHHHHHH-HCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEecCCchHHHHHHHHh-CceeEEEecch--HHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence 57999999999999888732 24433333222 24444 3555688666555555556667899999999999877
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. =....++=++.|+|+|||.++|++
T Consensus 131 ---~~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 131 ---GH-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp ---CG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ---hh-hhHHHHHHHHHhccCCCceEEEEE
Confidence 22 246678999999999999999863
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| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.31 E-value=8.1e-08 Score=87.77 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=62.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||.|.|+.+|.++... |+-+|-+ +.+..+ -+.|+ +-.++.=++.++.-+.+||+|++..++
T Consensus 17 ~rVLDiGcG~G~~~~~l~~~~~~-----v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l 91 (231)
T d1vl5a_ 17 EEVLDVATGGGHVANAFAPFVKK-----VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA 91 (231)
T ss_dssp CEEEEETCTTCHHHHHHGGGSSE-----EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred CEEEEecccCcHHHHHHHHhCCE-----EEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999855433 2222222 333322 22343 223333334444324799999999988
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
... -+...+|-|+-|+|+|||++++.+
T Consensus 92 ~~~------~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 92 HHF------PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GGC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 766 246678999999999999999853
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.28 E-value=8.5e-08 Score=91.17 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=62.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---ccc-ccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVL-HDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~-~~~~~~~~~yp~t~dl~h~~~ 378 (458)
-.|||+|||.|+++..|.++ ... +|+-++-+ ..+..+-+ .||- -++ .|+++ ++.=+.+||+|.+..
T Consensus 69 ~~vLDiGcG~G~~~~~la~~-~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-l~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRK-FGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIWSQD 143 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEEEES
T ss_pred CEEEEeCCCCcHHHhhhhcc-CCc---EEEEEeccchhhhhhhccccccccccccccccccccc-ccccccccchhhccc
Confidence 58999999999999999743 122 23333322 33433332 3542 222 23333 443348999999998
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+|..+ . +...+|-|+-|+|||||.+++.
T Consensus 144 ~l~h~---~---d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 144 AFLHS---P---DKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp CGGGC---S---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhc---c---CHHHHHHHHHHhcCCCcEEEEE
Confidence 88776 3 3467899999999999999985
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.25 E-value=2.3e-06 Score=81.51 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------------CCCeEEEeeccCCCCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------------GLPAMIGSFASKQLPYPSL 107 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------------~~~~~~~~~d~~~Lpfp~~ 107 (458)
..+++||-+|+|.|.....+++.. ..+++.+|+++.+++.|++. ..++.+...|+...--.++
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~--~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCceEEEecCCchHHHHHHHHhC--CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 556899999999999999988754 34899999999999999863 2457777777543211347
Q ss_pred CeeEEEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+||+|++-. ..+.... ..++++.+.+.|+|||.+++...
T Consensus 149 ~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 149 GFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp CEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 899999742 2322211 13689999999999999998654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=3.3e-07 Score=84.37 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=64.7
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc--ccccccccccCCCCCCcccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-|||+|||.|.++..|.+... +|+-+|-+ +.|.++- ++|+ +-.+..=.+.++.=..+||+|.+.++|.
T Consensus 19 rILDiGcGtG~~~~~la~~~~-----~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 93 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred EEEEeCCcCcHHHHHHHHhCC-----eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceee
Confidence 489999999999999984432 45555544 4555432 3443 2233322344443247999999998887
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. .+...+|=|+.|+|||||++++.+
T Consensus 94 ~~------~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 94 HF------SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GC------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc------cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 65 246789999999999999999853
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.21 E-value=3e-06 Score=82.17 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------CCCeEEEeeccCCC-CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQL-PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------~~~~~~~~~d~~~L-pfp~~sFD~ 111 (458)
..+++||.||.|.|.....+++.. +..+++.+|+++..++.|++. ..++.+...|+... .-.+++||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 456899999999999999998753 456899999999999999875 24677887776542 223468999
Q ss_pred EEeccccccccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~-------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++-. .-.+.. ...++++.+.+.|+|||.+++...
T Consensus 155 Ii~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 155 VIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 99642 122211 114689999999999999988653
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.19 E-value=3.2e-06 Score=75.49 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC----CCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL----PYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L----pfp~~sFD~I~ 113 (458)
...+|||++||+|.++...+++|.. +++.+|.++.+++.++++ +. ++.+...|+... .-....||+|+
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 3569999999999999999999864 899999999999998876 33 567777775432 12346799999
Q ss_pred eccccccccccHHHHHHHHH--hcccCCcEEEEEe
Q 012709 114 CARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTS 146 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~--RvLkPGG~liis~ 146 (458)
+--- +. .......+..+. .+|+|+|.+++..
T Consensus 119 lDPP-Y~-~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 119 LDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp ECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echh-hh-hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 7632 11 123345677764 4799999988754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=3e-06 Score=80.51 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lpfp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|..+..++.. +..+|+++|+|+.+++.|+++ +. ...+...+... ++...++||+|+|+-
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 187 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence 3468999999999999888753 577999999999999999887 33 34455555433 222336899999983
Q ss_pred cccccc--------ccHH----------HHHHH-HHhcccCCcEEEEEeC
Q 012709 117 CGVDWD--------QKDG----------ILLLE-VDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~--------~~~~----------~~L~e-i~RvLkPGG~liis~~ 147 (458)
-.+.-. -+|. .++++ +.+.|+|||.+++-..
T Consensus 188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211100 0111 22323 5678999999888653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.12 E-value=1.8e-06 Score=79.97 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=76.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C------CCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P------YPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p------fp~~sF 109 (458)
.++++|||||+++|..+.++++.-....+++.+|.++...+.|++. |. .+.+..+++... + ...++|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3567999999999999999987533457999999999999998876 33 467777765321 1 124689
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|+.-. ....-...+..+.++|+|||.+++-..
T Consensus 138 D~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 138 DFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp SEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred eEEEecc----chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 9999642 344455789999999999999998643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.11 E-value=4.7e-07 Score=84.80 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=68.8
Q ss_pred CCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhcccccccccccc-ccCCCCCCccccccc
Q 012709 302 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWC-EAFPTYPRTYDLVHA 376 (458)
Q Consensus 302 ~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl~g~~~~~~-~~~~~yp~t~dl~h~ 376 (458)
.+|+.++.|||+|||.|.++.+|.++...+-+.- .+-+..+.. +-+.|+..-+.--+ ..|...|..||++.+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 4678899999999999999999985543443322 122333332 33456533221111 124445678999999
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
..+|-.+. + -....+|=++=|.|||||.++|-|
T Consensus 153 ~~vlh~~~---d-~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 153 SFVLLNWP---D-HDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ESCGGGSC---H-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCC---c-hhhHHHHHHHHHhcCCCcEEEEEe
Confidence 98887762 1 123467899999999999999853
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=7.9e-07 Score=81.25 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=76.5
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--ccccccccccCCCCCCcccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-..|||+|||.|.++..|+ .+-.. .|+-+|-+ +.|..+-++ |. +-.++.=.+.++.-+.+||+|.+.++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~--~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLL--LPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CSEEEEETCTTTHHHHHTT--TTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCEEEEeccCCCHhhHHHH--HhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 4679999999999999886 33221 22223332 444443322 32 11111111234544689999999999
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccHH---------------HHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR---------------LIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~---------------~~~~~~~~~~~~~w~~~~~~ 436 (458)
+..+ .+. .+..+|-++=|+|||||.+++.|... ..++++++++.--+++.-.+
T Consensus 137 l~h~---~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 137 IGHL---TDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GGGS---CHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cccc---hhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 8876 221 24568999999999999999852211 25778888887777755443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.11 E-value=9.5e-07 Score=80.73 Aligned_cols=94 Identities=26% Similarity=0.361 Sum_probs=64.8
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCcccccccc-ccccccccC
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAE-GLLSLESGH 386 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~-~~~~~~~~~ 386 (458)
.|||+|||.|.++-.|. +... .|+=+|-+ ..+..+-++|..-.+..=.+.++.-+.+||+|-+. +++...
T Consensus 45 ~vLDiGcG~G~~~~~l~--~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~--- 116 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQ--ERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV--- 116 (246)
T ss_dssp EEEEETCTTCHHHHHHH--TTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC---
T ss_pred EEEEECCCCchhccccc--ccce---EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhh---
Confidence 58999999999999999 5433 33344443 67778888876322221223455434799998864 466654
Q ss_pred CCCCCcchhhhhhcccccCCceEEEec
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
. +...+|=|+-|+|+|||.+++..
T Consensus 117 ~---d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 117 E---NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h---hHHHHHHHHHhhcCcCcEEEEEE
Confidence 2 23557889999999999999863
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=1.4e-05 Score=76.80 Aligned_cols=105 Identities=14% Similarity=0.042 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC-CCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL-PYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L-pfp~~sFD~I 112 (458)
..+++||-||.|.|.....+++.. +..+++.+|+++.+++.|++. ..++.+...|+... .-.++.||+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 456899999999999999998753 356899999999999999875 34677777775432 2234689999
Q ss_pred Eeccccccccc-----cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQ-----KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~-----~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++-. ..+... ...++++.+.+.|+|||.++.....+
T Consensus 167 i~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp 207 (295)
T d1inla_ 167 IIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 207 (295)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence 9742 222211 12479999999999999999976543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=6.5e-07 Score=82.99 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=65.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhc----cccc----cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILD----RGFV----GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~----rgl~----g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-.|||+|||.|+++..|.+ ..+.-|.-|=+. +..+..+-+ .|+- -...|+.+-+ .+.+||+|++.++
T Consensus 35 ~~VLDiGCG~G~~~~~la~-~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v~~~~~ 109 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWAR-DHGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVAACVGA 109 (245)
T ss_dssp CEEEEETCTTCHHHHHHHH-HTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEEEEESC
T ss_pred CEEEEEcCCCCHHHHHHHH-hcCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEEEEEeh
Confidence 4699999999999998873 245666554332 234433333 3542 1334554433 3589999999998
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+... . +...+|-||-|+|||||.+++.+
T Consensus 110 ~~~~---~---d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 110 TWIA---G---GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GGGT---S---SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhcc---C---CHHHHHHHHHHHcCcCcEEEEEe
Confidence 8766 2 45778999999999999999953
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.00 E-value=7e-06 Score=74.01 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||.|||+|.+...+.++......+.|+|+++..+..+. ...+...+..... ....||+|+++.......
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----~~~~~~~~~~~~~-~~~~fd~ii~npP~~~~~ 92 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----WAEGILADFLLWE-PGEAFDLILGNPPYGIVG 92 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----TEEEEESCGGGCC-CSSCEEEEEECCCCCCBS
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----cceeeeeehhccc-cccccceecccCcccccc
Confidence 34579999999999999888766544568999999987654332 3455555544443 347899999875432210
Q ss_pred c---------------------------c-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 123 Q---------------------------K-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 123 ~---------------------------~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. + ...++..+.+.|+|||++++..|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 93 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 0 0 124567888999999999999873
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=4.7e-05 Score=72.74 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=78.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
..+++||=||-|.|...+.+++.. +..+++.+|++++.++.|++. ..++.+...|+... ..++++||+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 456899999999999999998753 345899999999999999874 35677777775432 234568999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.- +.-..... ...+++.+.+.|+|||.++......
T Consensus 158 Ii~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 158 VIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9964 22222111 1368999999999999999987533
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.99 E-value=1.3e-05 Score=74.39 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=59.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
...++|||||||+|.++..|++.+. +++++|+++.+++.++++. .++.+..+|+..++++......|+++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~N 92 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGN 92 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccceeeee
Confidence 4567999999999999999998764 8999999999999998873 46899999999888876655567766
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.99 E-value=1.2e-06 Score=78.85 Aligned_cols=95 Identities=22% Similarity=0.207 Sum_probs=64.4
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccc---cCCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCE---AFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~---~~~~yp~t~dl~h~~~~~ 380 (458)
.|||+|||.|.++..|.+.+. +|+-+|-+ +.+..+-++ |+.-. ..|. .++....+||+|.+.++|
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~-----~v~giD~S~~~i~~ak~~~~~~~~~~~--~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVE--FIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCE--EEECCTTSCCSCTTCEEEEEEESCG
T ss_pred EEEEECCCcchhhhhHhhhhc-----ccccccccccchhhhhhhhcccccccc--ccccccccccccCcCceEEEEecch
Confidence 589999999999999984433 34444544 556555443 33111 1222 233334899999999988
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
..+ . ..++..+|-|+-|+|+|||.+++...
T Consensus 113 ~~~---~-~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 113 VHF---E-PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp GGC---C-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhC---C-hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 866 1 23466789999999999999998753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=2e-06 Score=82.59 Aligned_cols=102 Identities=10% Similarity=0.119 Sum_probs=68.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhccccccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-.|||+|||.||++..|.++ .++=|..|.... +++.. +-+.||....+--+.-+.+.+.+||-|=+-+.|.+.
T Consensus 63 ~~VLDiGCG~G~~~~~~a~~-~g~~v~git~s~--~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~ 139 (291)
T d1kpia_ 63 MTLLDIGCGWGSTMRHAVAE-YDVNVIGLTLSE--NQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF 139 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHH-HCCEEEEEESCH--HHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEecCcchHHHHHHHHh-cCcceeeccchH--HHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhc
Confidence 46999999999999888642 355443332222 34333 455688666554455555556789999888888877
Q ss_pred ccCCCCC---CcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRC---STLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c---~~~~~~~e~drilrp~g~~~~~ 412 (458)
....... +...++=++.|+|+|||.+++.
T Consensus 140 ~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 140 ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp TCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred chhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 2111111 2457899999999999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=2.7e-06 Score=81.47 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=65.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC--CCchhhhccccccccccccccCCCCCCcccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~--~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
-.|||+|||.||+|-.+.+ ..++-|.-|...... ---..+.+.|+.+-..--+.-+...|-+||-|=+-+.|.+.
T Consensus 64 ~~VLDiGCG~G~~a~~~a~-~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh~-- 140 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVE-KYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHF-- 140 (285)
T ss_dssp CEEEEETCTTSHHHHHHHH-HHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGT--
T ss_pred CEEEEecCcchHHHHHHHh-cCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhhc--
Confidence 4599999999999987653 234444433332221 11124566777655443344444556789988888888765
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEe
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+ =+...++=|+.|+|+|||.+++.
T Consensus 141 -~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 141 -GH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp -CT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred -Cc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 21 23456889999999999999974
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=2.1e-06 Score=79.09 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=64.2
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----ccccccccc--cccccCCCCCCcccccccc-
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLH--DWCEAFPTYPRTYDLVHAE- 377 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl~g~~~--~~~~~~~~yp~t~dl~h~~- 377 (458)
..+.|||+|||.|.++..|.. +.. +|+-+|-+ +-|..+- ++|+-..++ |. +.++ ++.+||+|.+.
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~--~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~-~~l~-~~~~fD~I~~~~ 113 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAE--RGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV-LEIA-FKNEFDAVTMFF 113 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHH--TTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-GGCC-CCSCEEEEEECS
T ss_pred CCCEEEEeCCCCCccchhhcc--cce---EEEEEeeccccccccccccccccccchheehhh-hhcc-cccccchHhhhh
Confidence 357899999999999999984 432 44444543 4444433 345422222 33 3343 57899999875
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+.|... +..+....|-++-|+|+|||++|+.
T Consensus 114 ~~~~~~----~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 114 STIMYF----DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SGGGGS----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcC----ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 455554 1235667899999999999999984
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=4.4e-05 Score=72.75 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=76.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC-CCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL-PYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L-pfp~~sFD~I 112 (458)
..+++||-+|-|.|..+..+++.. +..+++.+|+.++.++.|++. ..++.+...|+... .-..++||+|
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 456899999999999999998753 346999999999999999875 35778887775432 2234689999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 113 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 113 ~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++-. ....... ..++++.+.+.|+|||.+++....
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 9752 2222111 125899999999999999997653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.92 E-value=3.1e-05 Score=74.71 Aligned_cols=105 Identities=11% Similarity=0.027 Sum_probs=75.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC-CCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L-pfp~~sFD~I 112 (458)
..+++||-||-|.|...+.+++.. +..+++.+|+++..++.|++.- .++.+...|+... .-..++||+|
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 456899999999999999999853 3458999999999999998852 4566776665432 2235789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++-. ....... ...+++.+.+.|+|||.++......
T Consensus 184 I~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 184 ITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EECC-C-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 9752 2221111 1368999999999999999986543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=7.8e-06 Score=75.34 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=48.0
Q ss_pred CCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccce
Q 012709 368 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWD 431 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~ 431 (458)
+.+||+|-+..++..+. ..+-....++=+|-|+|||||++|+.+-. -..+.++++++.--++
T Consensus 150 ~~~fD~i~~~~~l~~~~--~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 227 (257)
T d2a14a1 150 LPLADCVLTLLAMECAC--CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFD 227 (257)
T ss_dssp CCCEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred CCcccEEeehhhHHHhc--ccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCE
Confidence 46899999888887661 11224456888999999999999985321 1267888888888887
Q ss_pred EEEEe
Q 012709 432 ARVIE 436 (458)
Q Consensus 432 ~~~~~ 436 (458)
+.-.+
T Consensus 228 v~~~~ 232 (257)
T d2a14a1 228 IEQLL 232 (257)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=97.88 E-value=2.2e-06 Score=78.38 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=61.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc---ccccccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR---GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r---gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.|+..|.+....|..+...| +.+..+-.| ++-=+..+. +.++. |.+||+|-+.++|...
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~----~~i~~a~~~~~~~~~~~~~~~-~~~~~-~~~fD~I~~~~vleh~- 94 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFNDITCVEASE----EAISHAQGRLKDGITYIHSRF-EDAQL-PRRYDNIVLTHVLEHI- 94 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESCH----HHHHHHHHHSCSCEEEEESCG-GGCCC-SSCEEEEEEESCGGGC-
T ss_pred CcEEEEeCCCcHHHHHHHHcCCeEEEEeCcH----HHhhhhhcccccccccccccc-ccccc-ccccccccccceeEec-
Confidence 4699999999999999985444555443322 333333222 221112222 33333 7899999999999876
Q ss_pred cCCCCCCcchhhhhh-cccccCCceEEEe
Q 012709 385 GHRHRCSTLDIFTEI-DRILRPEGWVIIR 412 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~-drilrp~g~~~~~ 412 (458)
. +...+|.|+ +|+|+|||.+++.
T Consensus 95 --~---d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 95 --D---DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp --S---SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --C---CHHHHHHHHHHHhcCCCceEEEE
Confidence 2 345678888 6999999999984
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.87 E-value=1.4e-06 Score=81.94 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch----hhhcccccccccccc-ccCCCCCCccccccc
Q 012709 302 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFVGVLHDWC-EAFPTYPRTYDLVHA 376 (458)
Q Consensus 302 ~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~----~~~~rgl~g~~~~~~-~~~~~yp~t~dl~h~ 376 (458)
.+|+.+|.|||+|||.|.++.+|.+....+ +++-.|-+..+. .+-+.|+-....-.. ..|..-|-+||++..
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~---~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCc---EEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 468899999999999999999999542222 122222222232 233455533211111 123445678999999
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
..+|-.+.. -....+|=++=|.|||||.++|-|.
T Consensus 154 ~~vLh~~~d----~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSD----EDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCH----HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCc----HHHHHHHHHHHhhcCCcceeEEEEe
Confidence 988877621 1234678899999999999998653
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.87 E-value=3.6e-06 Score=78.83 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
...+|||||||+|.++..|++.+. +++++|+++.+++.++++. .++.+..+|+..++++...++.|+++.- ++
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~vv~NLP-Y~ 104 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIP-YH 104 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEEEEECC-SS
T ss_pred CCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeeeEeeeee-hh
Confidence 456899999999999999999764 8999999999998887763 3688889999999998888888887743 55
Q ss_pred cc
Q 012709 121 WD 122 (458)
Q Consensus 121 ~~ 122 (458)
+.
T Consensus 105 Is 106 (245)
T d1yuba_ 105 LS 106 (245)
T ss_dssp SC
T ss_pred hh
Confidence 55
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=4.2e-06 Score=78.93 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=57.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccccccccccCCCCCCccccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
-.+|||+|||.|.|+.+|.+....+-+.-| |-+ ..+..+-+|+- +.....=.+.++.-+.+||+|.+...+..
T Consensus 85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~gi---D~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-- 159 (268)
T d1p91a_ 85 ATAVLDIGCGEGYYTHAFADALPEITTFGL---DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-- 159 (268)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEE---ESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCEEEEe---cchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence 468999999999999999854334433333 332 45555555432 11111112334444589999985433221
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+-||-|+|||||++++..
T Consensus 160 -----------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 160 -----------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp -----------HHHHHHHEEEEEEEEEEE
T ss_pred -----------HHHHHHHhCCCcEEEEEe
Confidence 569999999999999853
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.86 E-value=4.2e-05 Score=72.50 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC-CCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL-PYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L-pfp~~sFD~I 112 (458)
..+++||-||-|.|..++.+++.. +..+++.+|++++.++.|++. ..++.+...|+... .-.+++||+|
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 456799999999999999998753 345899999999999999875 24677777775432 2335789999
Q ss_pred Eeccccccccc----cHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 113 HCARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 113 ~~~~~l~~~~~----~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+.-. ..+... -..++++.+.+.|+|||.++.....
T Consensus 153 i~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 153 MVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp EESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 9652 222211 1246899999999999999987653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.84 E-value=3.2e-06 Score=78.65 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=65.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccc---c-cccccc-ccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV---G-VLHDWC-EAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~---g-~~~~~~-~~~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|+++..+.+. ..- +|+=+|-+ ..|..+-+| +.. - ...|-. +++. -..+||+|.+.
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~--~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~V~~~ 100 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERA--GIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVISSQ 100 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHH--TCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEEEE
T ss_pred CEEEEecccCcHHHHHHHHc--CCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceEEEEc
Confidence 57999999999999888733 221 34444544 566666554 221 1 112221 2222 24589999887
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe--ccHHHHHHH
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESA 421 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~--d~~~~~~~~ 421 (458)
+.+-..- .+.-.+..+|-||.|+|+|||++|+. |...++...
T Consensus 101 ~~l~~~~--~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~ 144 (252)
T d1ri5a_ 101 FSFHYAF--STSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 144 (252)
T ss_dssp SCGGGGG--SSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHH
T ss_pred ceeeecC--CCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHH
Confidence 7665541 11223557899999999999999974 443444433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.83 E-value=2.1e-06 Score=80.57 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=76.3
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccccccccccccCCCCCCccccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.-.+|||+|||.|.++..|+++.-. +|.-++.. ..|..+-+ ++.+-.++.=-+.|+.=+.+||+|.+..+|
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~----~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYA----TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCS----EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCeEEEecccCChhhHHHHhhcCc----eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccc
Confidence 3568999999999999988732111 23233332 33333322 222222221123344335799999999998
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEeccHH----------------HHHHHHHHHhhccceEEEEee
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR----------------LIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~----------------~~~~~~~~~~~~~w~~~~~~~ 437 (458)
..+. + =.+..+|-++-|+|+|||+++|.|... ..++++++.+.--+++.-.+.
T Consensus 169 ~hl~---d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 169 IYLT---D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp GGSC---H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred cccc---h-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 8762 1 135577999999999999999964321 135677777766676654443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=0.00011 Score=66.70 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=73.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH----cCC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e----r~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|+|+|+|.|.-|..|+-. .|..+++.+|.+..-+.+.++ -++ ++.+....++.+. +..+||+|+|..+ -
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-~ 142 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-A 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS-S
T ss_pred CCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh-c
Confidence 358999999999999988864 367799999999876665543 355 6778877777764 3468999997643 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
....++.-+...+++||.+++.-
T Consensus 143 ----~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ----SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEC
Confidence 44568888999999999999875
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.80 E-value=2.9e-06 Score=75.94 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=64.4
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc---ccccccccccCCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.|||+|||.|.++-.|.++... |+-+|-+ ..|.. +-+.|+ -....|.++.. ++.+||+|.+..+|
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~-----v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYD-----VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVM 105 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCE-----EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCG
T ss_pred cEEEECCCCCHHHHHHHHHhhh-----hccccCcHHHHHHHHHHhhhccccchhhhheeccccc--ccccccEEEEeeee
Confidence 4999999999999999954333 3333333 33443 233444 23444555433 46899999999998
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
... ..=....+|=++-|.|+|||++++.
T Consensus 106 ~~~----~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 106 MFL----EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GGS----CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ecC----CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 765 2335667899999999999999984
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=5.4e-06 Score=78.00 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=59.7
Q ss_pred EEeeccccchhhhhhhhc----cCCCeEEEEeecCCCC-CCchhhhcc-----ccccccccccc------------cCCC
Q 012709 309 NVLDMNAHFGGFNSALLE----KGKSVWVMNVVPTIGT-NHLPMILDR-----GFVGVLHDWCE------------AFPT 366 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~----~~~~~~~m~v~~~~~~-~~l~~~~~r-----gl~g~~~~~~~------------~~~~ 366 (458)
+|||+|||.|.|+..|+. ...+. ...++-++.+ ..|..+-+| .+-.+-.+|.. +++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~-~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 120 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE- 120 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS-
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCC-ceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC-
Confidence 599999999999777652 11122 2233444433 334433322 22222223321 222
Q ss_pred CCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 367 YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 367 yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+.+||+|++.++|... . ++...|-+|-|+|+|||++++.
T Consensus 121 -~~~fD~I~~~~~l~~~---~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 121 -LQKWDFIHMIQMLYYV---K---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp -CCCEEEEEEESCGGGC---S---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred -CCceeEEEEccceecC---C---CHHHHHHHHHhhCCCCCEEEEE
Confidence 4799999999998876 2 3678999999999999998873
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=8.1e-05 Score=66.02 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=69.4
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccC---CCCCCCCCeeEEEec
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASK---QLPYPSLSFDMLHCA 115 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~---~Lpfp~~sFD~I~~~ 115 (458)
.+|||+.||+|.++...+++|.. +++.+|.+...++..+++ +. ...+...+.. ........||+|++-
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 58999999999999999999964 899999999999888776 22 2444444322 223345679999986
Q ss_pred ccccccccc-HHHHHHHHH--hcccCCcEEEEEeC
Q 012709 116 RCGVDWDQK-DGILLLEVD--RVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~-~~~~L~ei~--RvLkPGG~liis~~ 147 (458)
-- +..+ ...++..+. .+|+++|.+++-..
T Consensus 123 PP---Y~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PP---FHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CC---SSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hh---HhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 33 2222 335666654 47999999998653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.72 E-value=9.9e-06 Score=73.72 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=73.2
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccCCCCC-Cccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~~~yp-~t~dl~h~~~~~ 380 (458)
..|||+|||+|..+.+|.+. ..|-+ +|+-.|-+ .-|..+-++ +....++-.|..+..+| ..+|++.+..++
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 47999999999998887632 12222 55556654 666665543 67778887777776666 488999988877
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
... +.=+...+|=||=|.|+|||.+|+.|
T Consensus 119 ~~~----~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 119 QFL----PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GGS----CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc----ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 654 23355678999999999999999864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.68 E-value=5.8e-06 Score=78.42 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=60.6
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhh----ccccc-c-ccccccccCCCCCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMIL----DRGFV-G-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~----~rgl~-g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
=++|||+|||.|.++..|.+. ....-| +-+|-+ +.+..+- +.|+- - ...|.. .++ ++.+||+|++.+
T Consensus 28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v---~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~-~~~-~~~~fD~v~~~~ 102 (281)
T d2gh1a1 28 PVHIVDYGCGYGYLGLVLMPLLPEGSKY---TGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHA 102 (281)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTCEE---EEEECCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEES
T ss_pred cCEEEEecCcCCHHHHHHHHhCCCCCEE---EEEecchhHhhhhhcccccccccccccccccc-ccc-ccCCceEEEEeh
Confidence 467999999999999887632 112222 222322 2233222 22321 1 122333 333 467999999999
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+|... . +...+|-||-|+|||||++++.+
T Consensus 103 ~l~~~---~---d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 103 FLLHM---T---TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp CGGGC---S---SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcC---C---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99876 2 24578999999999999999854
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.62 E-value=1.5e-05 Score=73.23 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=63.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-cccc-ccccccCCCCCCcccccccc-cc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVL-HDWCEAFPTYPRTYDLVHAE-GL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~-~~~~~~~~~yp~t~dl~h~~-~~ 379 (458)
++|||+|||.|.++-.|.++.. +|+=+|.+ ..|.++-+| |+ +-++ .|..+ |+. +.+||+|=+. +.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~-----~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LNI-NRKFDLITCCLDS 111 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CCC-SCCEEEEEECTTG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC-----ccEeeccchhhhhhccccccccCccceeeccchhh-hcc-cccccccceeeee
Confidence 6799999999999999995433 44555655 556665554 43 2222 13332 443 6899987643 45
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
|... .+.-....+|=+|-|.|+|||.+|+
T Consensus 112 ~~~~---~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 112 TNYI---IDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGC---CSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eecc---CCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 5544 3334556689999999999999997
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=97.60 E-value=3.8e-05 Score=69.63 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=70.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CC----chhhhccccccc--c----ccccccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NH----LPMILDRGFVGV--L----HDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~----l~~~~~rgl~g~--~----~~~~~~~~~yp~t~dl~h~ 376 (458)
..|||+|||.|.|+.+|.++....- ++-++-. +. ..-+-++||=.+ + .+.-+.|+ +.++|.++.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~---~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i 105 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDIN---YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYL 105 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSE---EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCc---EEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhcccc
Confidence 3699999999999999976555543 3333432 22 223555666211 1 11112244 368888775
Q ss_pred cccccccccC-CCCCCc-chhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccc
Q 012709 377 EGLLSLESGH-RHRCST-LDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKW 430 (458)
Q Consensus 377 ~~~~~~~~~~-~~~c~~-~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w 430 (458)
....-..+.. ..+.-+ ..+|=||-|+|+|||.+.|+ |..+..+.+.......-.
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~ 162 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL 162 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence 4443322111 123333 36888999999999999885 777777777777654443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.56 E-value=2.4e-05 Score=69.81 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=75.9
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc-----ccccccccCCCCCCccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG-----VLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g-----~~~~~~~~~~~yp~t~dl~h~ 376 (458)
-.+|+|+|||.|.++.+|..... +|.-++-. ..+..+-+ .|+-. +..|+-+.++ +.+||+|-+
T Consensus 53 ~~~VLDiGcG~G~~~~~la~~~~-----~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii~ 125 (194)
T d1dusa_ 53 DDDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIIT 125 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEE
T ss_pred CCeEEEEeecCChhHHHHHhhcc-----ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--cCCceEEEE
Confidence 46899999999999999985444 33333432 33333322 23311 2235545443 579999998
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEEeeccCCCccEEEEEe
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
+..|... .=.++.++=++.|+|+|||.+++- .....-+.+...++..-+++...... + .=+|+-++|
T Consensus 126 ~~p~~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~-~-gf~vl~a~K 193 (194)
T d1dusa_ 126 NPPIRAG-----KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK-G-GYRVLKSKK 193 (194)
T ss_dssp CCCSTTC-----HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE-T-TEEEEEEEC
T ss_pred cccEEec-----chhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec-C-CcEEEEEEE
Confidence 7765422 112346788899999999987663 22222345555556665665554321 1 134666665
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.56 E-value=1.6e-05 Score=74.60 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=69.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhh----cccccc--ccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMIL----DRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~----~rgl~g--~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
..|||+|||+|.++.++......|.-+-+-| .-+..+- ..|+-. +..|.-+.++. .+||+|.|+-++.
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~----~av~~A~~na~~n~~~~~~~~~d~~~~~~~--~~fD~V~ani~~~ 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDP----MVLPQAEANAKRNGVRPRFLEGSLEAALPF--GPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCG----GGHHHHHHHHHHTTCCCEEEESCHHHHGGG--CCEEEEEEECCHH
T ss_pred CEEEEcccchhHHHHHHHhcCCEEEEEECCh----HHHHHHHHHHHHcCCceeEEeccccccccc--cccchhhhccccc
Confidence 4799999999999988874444443332222 3333222 234311 11223333443 5799998765444
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEEEe
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
.. ..++=++-|+|+|||++|+.+- .+-.+.+.+.++...|+..-..
T Consensus 196 ~l---------~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 LH---------AALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp HH---------HHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEE
T ss_pred cH---------HHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEE
Confidence 33 3456689999999999998642 1224667777777778765443
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.52 E-value=4.1e-05 Score=69.55 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=57.1
Q ss_pred EEeeccccchhhhhhhhccCC--CeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 309 NVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~--~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
.|||+|||.|+++.+|.+.-. .|.-+-+.|.--..-...+-.|+.+-..+.=++....|+..+|.+- -+|...
T Consensus 59 ~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd--~v~~~~--- 133 (209)
T d1nt2a_ 59 RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD--LIYQDI--- 133 (209)
T ss_dssp EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE--EEEECC---
T ss_pred EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE--EEEecc---
Confidence 899999999999998873211 2333322221100111223345544444333333445566655433 344433
Q ss_pred CCCCCcchhhhhhcccccCCceEEEec
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
-+......++.|+.|+|+|||++++-+
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 234455678999999999999999853
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=8e-05 Score=66.11 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~~ 114 (458)
.+..+|||+||++|.|+.++.++......+.++|..+- +.-..+.+..++..... ...+.||+|+|
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS 94 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhhhhhhhccCcceeEEEe
Confidence 44579999999999999999876545568999998762 12235666666654321 23467999998
Q ss_pred ccccccccccH-----------HHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~-----------~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.+ .+...+. ...+.-+.++|++||.|++-..
T Consensus 95 D~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 95 DMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 643 3333221 1356667899999999999875
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=2e-05 Score=73.80 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhcc
Q 012709 366 TYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLK 429 (458)
Q Consensus 366 ~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~ 429 (458)
..+..||+|-+..+++... .++.++..+|=++-|+|||||++|+.+-. -..+.|+++++.--
T Consensus 153 ~~~~~fD~V~~~~~l~~i~--~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aG 230 (263)
T d2g72a1 153 PAPLPADALVSAFCLEAVS--PDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG 230 (263)
T ss_dssp SSCSSEEEEEEESCHHHHC--SSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT
T ss_pred cCcCccCeeeeHHHHHHHc--cCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCC
Confidence 3356899999888888773 34567788999999999999999984221 12477888877766
Q ss_pred ceEEE
Q 012709 430 WDARV 434 (458)
Q Consensus 430 w~~~~ 434 (458)
-++.-
T Consensus 231 f~v~~ 235 (263)
T d2g72a1 231 YKVRD 235 (263)
T ss_dssp EEEEE
T ss_pred CeEEE
Confidence 66443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.50 E-value=3.3e-05 Score=74.31 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=61.8
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhccccc---cccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~rgl~---g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
++|||+|||.|.++-.+...+ +.|..+- +.... .....+-..|+. -+.+.--+.++.-+..+|+|-+.-+...
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd--~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIE--CSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEE--CSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEc--CcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 579999999998876555323 3233222 11111 122344445663 3333333334544578999987766665
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEE
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
. ...-.++.++-+++|.|+|||.+|
T Consensus 113 l---~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 113 L---FYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp B---TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred e---ccHHHHHHHHHHHHhcCCCCeEEE
Confidence 5 455667889999999999999988
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=1.6e-05 Score=73.01 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=59.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc------cccccccccccCCCCC-Ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG------FVGVLHDWCEAFPTYP-RTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg------l~g~~~~~~~~~~~yp-~t~dl~h~~~~ 379 (458)
.+|||+|||.|.+|.+|. +... -+|+-++-+ ..+..+-++. +..+.+++..-....| .+||+|-.+..
T Consensus 55 ~~VLdIGcG~G~~a~~~a--~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQ--EAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp EEEEEECCTTSHHHHHHH--TSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEeeccchHHHHHHH--HcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 689999999999999998 4432 134434433 4454443322 2233444433322223 57888754433
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+.... .+.-....++-|+=|+|||||.+++-
T Consensus 131 ~~~~~~-~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 131 PLSEET-WHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCBGGG-TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccc-ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 332210 22333456888999999999999883
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=3.1e-05 Score=74.13 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=62.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCC----Cchhhhcccc---ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTN----HLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~----~l~~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||+|.++..+...+- --| +-.+.+. ....+-+.|+ |-+.+.-.+.+..-+..||+|=+.-++
T Consensus 37 ~~VLDiGcG~G~lsl~aa~~Ga-~~V---~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 37 KVVLDVGCGTGILSMFAAKAGA-KKV---LGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-SEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CEEEEECCCCCHHHHHHHHcCC-CEE---EEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 5799999999999877763332 122 2223222 2234555565 344444445555545899999877666
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+.. ...-.++.++-.++|.|+|||.+|-
T Consensus 113 ~~~---~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFL---LFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTB---TTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eec---ccccccHHHHHHHHhcCCCCcEEec
Confidence 655 3344566778889999999999983
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.47 E-value=4.7e-05 Score=70.26 Aligned_cols=118 Identities=12% Similarity=0.103 Sum_probs=71.8
Q ss_pred EEeeccccchhhhhhhhccCC--CeEEEEeecCCCCCCchhhhcccc-ccccccccccCCCCCCcccccccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGK--SVWVMNVVPTIGTNHLPMILDRGF-VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~--~~~~m~v~~~~~~~~l~~~~~rgl-~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
.|||+|||.|.++.+|.+.-. .|+-+.+.|.--..-...+-.|+. +-+.+|...+...-+.++|.+-+ |...
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i---~~~~-- 151 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI---YEDV-- 151 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE---EECC--
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe---eccc--
Confidence 799999999999999984322 355555544322222223444553 44556666654433445554332 3333
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEec----------cHHHHHHHHHHHhhccceE
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIRD----------TARLIESARALTTRLKWDA 432 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~d----------~~~~~~~~~~~~~~~~w~~ 432 (458)
........++.|+.|+|+|||++++-+ .....+++.+.++.-..+.
T Consensus 152 -~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 -AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp -CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred -cchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 234556678999999999999999842 2234566666666655654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.45 E-value=4.9e-06 Score=79.06 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccccccc-------ccc---ccCCCCCCcc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLH-------DWC---EAFPTYPRTY 371 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~-------~~~---~~~~~yp~t~ 371 (458)
.++|||+|||.|.++..|.+++. +|+-+|-+ +-|.++-+ ++.-..++ +|- ..++ +..+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 130 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGF 130 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC-----eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCc
Confidence 47899999999999999995433 45555554 44544332 23322111 221 1222 24689
Q ss_pred cccccc-ccccccccC-CCCCCcchhhhhhcccccCCceEEEe
Q 012709 372 DLVHAE-GLLSLESGH-RHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 372 dl~h~~-~~~~~~~~~-~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
|+|-+. ..|..+... ...-.+..+|-||-|+|+|||.+|+.
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 998754 355554210 01112446899999999999999984
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.43 E-value=0.00056 Score=65.61 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=76.7
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEe--
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHC-- 114 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~-- 114 (458)
...+.+|||+.||.|.=+.+++........+++.|.++.-++...++ +. ++.+...|...++.....||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 34557999999999998888876544456899999999887766544 44 455666666666666688999996
Q ss_pred --ccc--c-----ccccccH----------HHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 115 --ARC--G-----VDWDQKD----------GILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 115 --~~~--l-----~~~~~~~----------~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+.. + ..|.... .++|..+.+.|||||+++.++-...
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 211 1 0011111 2578899999999999999997553
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.43 E-value=0.00039 Score=61.63 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=74.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeeccCCCC-----CCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLP-----YPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~~~Lp-----fp~~sFD~I~~~~ 116 (458)
.....++|..||.|..+..+++++ .+|+|+|..+.++..|+++. .+..+.......+. +..+.+|.|+.-.
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 445699999999999999999875 38999999999999998763 35666665544331 3346799998643
Q ss_pred ccccc--cc------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDW--DQ------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~--~~------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+-.. .. .....|.....+|+|||.+++...
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 21111 11 112468888999999999999885
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.42 E-value=0.0011 Score=61.17 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCC-CeEEEeeccCCCCC---CCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLPY---PSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~-~~~~~~~d~~~Lpf---p~~sFD~I~~~ 115 (458)
...+++|||+|.|.-|..|+=. .+..+++.+|.+..-+.+.+ +-++ ++.+....++.+.. ..++||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~-~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHh-CCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3468999999999988888753 35679999999987665543 2255 55666655554432 13679999986
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ - ....++.-....+++||.+++.--
T Consensus 149 Av-a----~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 149 AV-A----RLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp CC-S----CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred hh-h----CHHHHHHHHhhhcccCCEEEEECC
Confidence 43 2 456689999999999999998753
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.40 E-value=4.5e-05 Score=73.65 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhccCC-CeEEEEeecCCCCCC----chhhhcccccc---ccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGTNH----LPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~~~----l~~~~~rgl~g---~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||+|.++-.+....- .|.. .+.... ...+-+.|+.. +++.-.+.++.-+..+|+|-+.-+
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~a-----vd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIG-----VDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEE-----EESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEE-----EeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence 5799999999998776663332 2322 222222 23455567633 333333334433478999988777
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
+... ...-.+..++.+++|+|+|||.+|
T Consensus 115 ~~~~---~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 115 GYFL---LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTB---STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceee---ccchhHHHHHHHHHhccCCCeEEE
Confidence 7665 445567788999999999999987
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.37 E-value=0.00014 Score=65.74 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC--CCchhhhcccc--ccccc-c---ccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGF--VGVLH-D---WCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~--~~l~~~~~rgl--~g~~~-~---~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|.|...|..+....-++-|=+.... ..+.-+-+.|| |-+++ | .-+-|+ +.++|.||...-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~--~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE--DGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC--TTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhcc--CCceehhccccc
Confidence 47999999999999999765555544433322211 12223445665 22222 2 222233 368898884322
Q ss_pred cccccc--CCCCCCc-chhhhhhcccccCCceEEE-eccHHHHHHHHHHHhhccceEEE
Q 012709 380 LSLESG--HRHRCST-LDIFTEIDRILRPEGWVII-RDTARLIESARALTTRLKWDARV 434 (458)
Q Consensus 380 ~~~~~~--~~~~c~~-~~~~~e~drilrp~g~~~~-~d~~~~~~~~~~~~~~~~w~~~~ 434 (458)
..|-. ..+|--+ ..+|=++-|+|+|||.+.+ .|..+..+.+........|....
T Consensus 111 -dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 111 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred -ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 12210 0112233 4678889999999999988 57777777776666666665443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00048 Score=66.66 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC----CCCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL----PYPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L----pfp~~sFD~I~ 113 (458)
.+..+|||+-||+|.++..|+++.. +|+|+|.++.+++.|+++ ++ ++.+..++.... +.....||+|+
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 3456999999999999999998654 899999999999988776 44 677887776542 22346799998
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..--. ..- ...+..+.+ ++|.-.+++|..
T Consensus 288 lDPPR---~G~-~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 288 LDPAR---AGA-AGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp ECCCT---TCC-HHHHHHHHH-HCCSEEEEEESC
T ss_pred eCCCC---ccH-HHHHHHHHH-cCCCEEEEEeCC
Confidence 65321 111 245666655 367766777653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.32 E-value=9.4e-05 Score=68.06 Aligned_cols=134 Identities=13% Similarity=0.267 Sum_probs=73.8
Q ss_pred EEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcccc-cccccccccc--CCCCCCccccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF-VGVLHDWCEA--FPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl-~g~~~~~~~~--~~~yp~t~dl~h~~~~~~~ 382 (458)
.|||+|||.|+++.+|.+. +-.|..+-+.|.-.......+-.|+. ..+..|=..+ ++...-.+|.++.+
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d----- 150 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED----- 150 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC-----
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE-----
Confidence 7999999999999999732 12344443333222222333444553 3344333322 22222356666532
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe----------ccHHHHHHHHHHHhhccceE-EEEeeccCC-CccEEEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR----------DTARLIESARALTTRLKWDA-RVIEIESNS-DERLLICQK 450 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~----------d~~~~~~~~~~~~~~~~w~~-~~~~~~~~~-~~~~~~~~k 450 (458)
. .+.=....++-++.|.|+|||++++. +...+..+++++.+. .++. ...+.+.-. +--++|++|
T Consensus 151 ~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 151 V---AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp C---CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSSSEEEEEEEC
T ss_pred c---cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCCceEEEEEEe
Confidence 2 11112345799999999999999984 224555666666554 4553 233333322 245677887
Q ss_pred c
Q 012709 451 P 451 (458)
Q Consensus 451 ~ 451 (458)
+
T Consensus 227 ~ 227 (227)
T d1g8aa_ 227 T 227 (227)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.0011 Score=62.56 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCC--CCCCCCeeEEEe-
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQL--PYPSLSFDMLHC- 114 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~L--pfp~~sFD~I~~- 114 (458)
.....+|||+.||.|.=+.+++... ....|+++|.++.-++..+++ +.+......+.... ....+.||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 3455799999999999998888764 346899999998776655443 66655444433222 133468999995
Q ss_pred ---ccc--c-------cccccc--------HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 115 ---ARC--G-------VDWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 115 ---~~~--l-------~~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
+.. + ..+... ..++|..+.+.|||||+++.++-...+
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 221 1 011111 125788999999999999999986543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.18 E-value=0.00024 Score=65.48 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCchhHHHHhh---cCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC----CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~---~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp----fp~~sFD~I~~~~ 116 (458)
.+++|||||++.|..+..++. ......+++++|+.+.....+.....++.+..+|..... +....+|+|+.-.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 356999999999976655542 112356899999987655444444567888888765432 3345688887543
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. |+ .......+ ++..+|+|||++++-+.
T Consensus 160 ~-H~-~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 160 A-HA-NTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp S-CS-SHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred C-cc-hHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 2 33 21212223 46689999999999875
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.00021 Score=65.00 Aligned_cols=121 Identities=11% Similarity=-0.040 Sum_probs=73.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----------------------ccc-cc-ccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----------------------RGF-VG-VLHDWCE 362 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----------------------rgl-~g-~~~~~~~ 362 (458)
..|||+|||.|-.+-.|.+++.. |+-+|.+ .-+..+.+ .|. +- ...|.-+
T Consensus 47 ~rvLd~GCG~G~~a~~LA~~G~~-----V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFADRGHS-----VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CEEEETTCTTCTHHHHHHHTTCE-----EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CEEEEeCCCCcHHHHHHHhCCCc-----EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 46999999999999999955443 3444433 22221111 111 10 1112222
Q ss_pred cCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH------------HHHHHHHHHHhhccc
Q 012709 363 AFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA------------RLIESARALTTRLKW 430 (458)
Q Consensus 363 ~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~------------~~~~~~~~~~~~~~w 430 (458)
--+.+..+||+|...++|-.+. .=....++-+|-|+|||||++++-... -.-++++.+... .|
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~----~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~ 196 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAIN----PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-IC 196 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSC----GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TE
T ss_pred ccccccCceeEEEEEEEEEecc----chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CC
Confidence 1244557899999888887652 223457889999999999987763110 124667788766 47
Q ss_pred eEEEEeec
Q 012709 431 DARVIEIE 438 (458)
Q Consensus 431 ~~~~~~~~ 438 (458)
++...+..
T Consensus 197 ~i~~le~~ 204 (229)
T d2bzga1 197 NIRCLEKV 204 (229)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 77665543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00058 Score=63.61 Aligned_cols=59 Identities=8% Similarity=0.024 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPY 104 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpf 104 (458)
...+.|||||||+|.++..|++++. +++++|+++.+++..+++. .++.+..+|+..+++
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 3457899999999999999998764 8999999999999988763 357778777766543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.98 E-value=8.4e-05 Score=64.62 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=58.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc----------ccc----ccccc-cccc-CCC--CC-
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR----------GFV----GVLHD-WCEA-FPT--YP- 368 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r----------gl~----g~~~~-~~~~-~~~--yp- 368 (458)
..|||+|||.|.+|..|.+++-.|+.+.+.+ +.|..+-+| +-. +...+ .|-. +.. ++
T Consensus 22 ~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~----~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLSGQGYHVVGAELSE----AAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CEEEETTTCCSHHHHHHHHHCCEEEEEEECH----HHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CEEEEecCcCCHHHHHHHHcCCceEeecccH----HHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence 5899999999999999997776666554432 223322221 100 00000 1111 121 11
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
.+||+|....+|..+. .-....++-+|-|.|+|||.+++
T Consensus 98 ~~~D~i~~~~~l~~l~----~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALP----ADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp HSEEEEEEESCGGGSC----HHHHHHHHHHHHHHSCSEEEEEE
T ss_pred cceeEEEEEeeeEecc----hhhhHHHHHHHHHhcCCCcEEEE
Confidence 4689998888876551 22344678889999999999877
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.97 E-value=0.0014 Score=60.56 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH--HH-HHcCCCe-EEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ--LT-LERGLPA-MIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~--~A-~er~~~~-~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|+|+|||.|.++.+++.+. ....+.|+++--..-+ .. ...+-++ .+... ..-.-.+.+..|+|+|--+ .+
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~-~dv~~l~~~~~D~vlcDm~-es 143 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIG-ES 143 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCC-CC
T ss_pred CCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchhh-hhHHhcCCCcCCEEEeeCC-CC
Confidence 3589999999999999999874 3457777776322100 00 0001111 12111 1112245678999999642 22
Q ss_pred ccccHH-------HHHHHHHhcccCCcEEEEEeCCC
Q 012709 121 WDQKDG-------ILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 121 ~~~~~~-------~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..++. ++|.-+.+.|+|||.|++-...+
T Consensus 144 -s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 144 -SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred -CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 21211 46677789999999999987755
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0019 Score=60.92 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--C----CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--G----LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~----~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
..+.|||||+|+|.++..|++++. +++++|+++.+++..+++ . .++.+..+|+...+++ .++.|+++
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~--~~~~vV~N 93 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP--FFDTCVAN 93 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC--CCSEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh--hhhhhhcc
Confidence 457999999999999999999764 899999999999988775 1 3577888887776655 35677776
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.83 E-value=0.0022 Score=63.68 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcC----C--------ccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKE----L--------LTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP 103 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~----~--------~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lp 103 (458)
....+|+|-.||+|.+...+.++- . ....+.|+|+++.+...|+-+ +. ...+...|....
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~- 239 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK- 239 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS-
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh-
Confidence 345689999999999987775431 0 023589999999999888765 22 233444554332
Q ss_pred CCCCCeeEEEecccccc-c---------------cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 104 YPSLSFDMLHCARCGVD-W---------------DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 104 fp~~sFD~I~~~~~l~~-~---------------~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+...||+|+++--+-. + ......++..+...|++||++++..|
T Consensus 240 ~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 240 EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 34578999999854311 0 00112588899999999999999987
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.76 E-value=0.00028 Score=62.16 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=66.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-.|||+|||+|+++.+|......|. -+|-. +-+..+-+ .|+- =+++.-.+...+=..+||++=+.+.
T Consensus 35 ~~VLDiGcGsG~~s~~lA~~~~~V~-----avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTLELAGRVRRVY-----AIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS 109 (186)
T ss_dssp CEEEEESCTTSHHHHHHHTTSSEEE-----EEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred CEEEEEECCeEcccccccccceEEE-----EecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc
Confidence 4799999999999999984433333 33433 44444332 3431 1222111111111256787754332
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~~ 435 (458)
.=.+..++-++-+.|||||++++..- .+...++.+.+....|+..+.
T Consensus 110 ---------~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~~ 157 (186)
T d1l3ia_ 110 ---------GGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (186)
T ss_dssp ---------TTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred ---------cccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEEE
Confidence 12356788899999999999998643 344556666677766764433
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.0059 Score=57.63 Aligned_cols=107 Identities=8% Similarity=-0.019 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC---CCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp---~~sFD~I~~ 114 (458)
..+.+|||+.||.|.-+.+++..-.....++++|+++.-++..+++ |. ++.+...|...++-. .+.||.|++
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence 4457999999999998888876532345899999999877766554 54 466666666555322 257999995
Q ss_pred c----cccc-------cc--ccc----------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 115 A----RCGV-------DW--DQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 115 ~----~~l~-------~~--~~~----------~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
- ..-. .| ... ..+++..+. .|+|||.++.++-...
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 2 1100 01 000 012444444 4799999999987553
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.62 E-value=0.00062 Score=63.29 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=60.1
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cc----ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF----VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl----~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-+|||+|||.|+++.+|... ...-= |.-++-. .-+..+-++ +. --...|.++.++ ..+||.|..+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~fD~V~ld 161 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIAD 161 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEEC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--cceeeeeeec
Confidence 47999999999999888631 11111 1222222 334443331 22 223356777665 3789998732
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 428 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~ 428 (458)
+-+. ..++=++-|+|||||.+++--- .++.++++...|
T Consensus 162 -~p~p----------~~~l~~~~~~LKpGG~lv~~~P--~i~Qv~~~~~~l 199 (250)
T d1yb2a1 162 -IPDP----------WNHVQKIASMMKPGSVATFYLP--NFDQSEKTVLSL 199 (250)
T ss_dssp -CSCG----------GGSHHHHHHTEEEEEEEEEEES--SHHHHHHHHHHS
T ss_pred -CCch----------HHHHHHHHHhcCCCceEEEEeC--CcChHHHHHHHH
Confidence 2222 2468889999999999997422 134444444444
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.00021 Score=64.77 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=47.2
Q ss_pred EEeeccccchhhhhhhhcc-CCC--eEEEEeecCCCCCCchhh---hc-cccccccccccccCCCCC--Ccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEK-GKS--VWVMNVVPTIGTNHLPMI---LD-RGFVGVLHDWCEAFPTYP--RTYDLVHAEGL 379 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~-~~~--~~~m~v~~~~~~~~l~~~---~~-rgl~g~~~~~~~~~~~yp--~t~dl~h~~~~ 379 (458)
+|||+|||+|.++|.|... +.. |...-.-| ..+..+ ++ .|+-.+..-.......+| .+||.|++.+.
T Consensus 78 ~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~----~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 78 RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR----KICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred eEEEecCccchhHHHHHHHhCCCCcEEEeecch----hhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 8999999999999888521 222 33332211 122221 11 222121111122222233 57999997766
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+... .-++=|.|||||.+|+
T Consensus 154 ~~~~------------p~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 154 VDEV------------PETWFTQLKEGGRVIV 173 (213)
T ss_dssp BSCC------------CHHHHHHEEEEEEEEE
T ss_pred HHHh------------HHHHHHhcCCCcEEEE
Confidence 5433 2233467999999987
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.24 E-value=0.0079 Score=58.80 Aligned_cols=100 Identities=14% Similarity=0.012 Sum_probs=70.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC----------------eEEEeeccCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----------------AMIGSFASKQLP 103 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~----------------~~~~~~d~~~Lp 103 (458)
+..+|||..||+|..+..++... ...+|+..|+|+.+++.++++ +.. +.+...|+..+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 34689999999999999655432 234899999999999999876 221 122223322221
Q ss_pred -CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 104 -YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 104 -fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
-....||+|..- ++- .+..+|..+.+.++.||.+.++....
T Consensus 124 ~~~~~~fDvIDiD----PfG-s~~pfldsAi~a~~~~Gll~vTaTD~ 165 (375)
T d2dula1 124 AERHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTATDG 165 (375)
T ss_dssp HHSTTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred HhhcCcCCcccCC----CCC-CcHHHHHHHHHHhccCCEEEEEecCc
Confidence 123569999854 233 45679999999999999999997644
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0019 Score=60.39 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=61.3
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhh----cccccc----ccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMIL----DRGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~----~rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-.|||+|||.|+++++|... ...-=|. -++-. ..+..+- .-|+.. ...|-++.|.. ..+|.+.
T Consensus 105 ~~VLDiG~GsG~lt~~lA~~~~~~G~V~---~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~D~V~-- 177 (266)
T d1o54a_ 105 DRIIDTGVGSGAMCAVLARAVGSSGKVF---AYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALF-- 177 (266)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTTCEEE---EECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEE--
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCcEEE---EEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc--cceeeeE--
Confidence 47999999999999988632 1111122 22222 3333321 124322 22344455543 6677665
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccce
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWD 431 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~ 431 (458)
.+-.+...+|=++-|+|||||.+++- -..+-++++-+.++.-.|.
T Consensus 178 ---------~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 178 ---------LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp ---------ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ---------ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 23345567899999999999999863 3333344444444444563
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0039 Score=63.57 Aligned_cols=104 Identities=12% Similarity=0.001 Sum_probs=66.8
Q ss_pred CCCEEEEECCCCchhHHHHhhc----CC-------------ccceEEEEcCCHHHHHHHHHc----CCCeE------EEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSK----EL-------------LTMCIANYEASGSQVQLTLER----GLPAM------IGS 96 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~----~~-------------~~~~v~gvD~S~~~i~~A~er----~~~~~------~~~ 96 (458)
...+|+|-.||+|.|.....+. .. ....+.|.|+++.+...|+-+ +.... +..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 3468999999999998765432 10 012589999999999888754 22211 122
Q ss_pred eccCCC-CCCCCCeeEEEecccccc-c-----------cccH-HHHHHHHHhcccCCcEEEEEeC
Q 012709 97 FASKQL-PYPSLSFDMLHCARCGVD-W-----------DQKD-GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 97 ~d~~~L-pfp~~sFD~I~~~~~l~~-~-----------~~~~-~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.... ......||+|+++--+-. + ..+. -.++..+.+.|+|||++++..|
T Consensus 244 ~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 244 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 211111 123467999999843211 0 1111 2588999999999999999987
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.05 E-value=0.00076 Score=62.35 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCceeEEeeccccchhhhhhhhccCCC--eEEEEeecCCCCCCchhhhccc----cccccccccccCCCCCCcccccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~--~~~m~v~~~~~~~~l~~~~~rg----l~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
|+.++.|+|+|||.|.++++|.++... +.++.. | .+|-+.+ +--+-+|.=+++ | ..|++...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p---~vi~~~~~~~ri~~~~gd~~~~~---p-~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----P---QVIENAPPLSGIEHVGGDMFASV---P-QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H---HHHTTCCCCTTEEEEECCTTTCC---C-CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----h---hhhhccCCCCCeEEecCCccccc---c-cceEEEEe
Confidence 567999999999999999999865332 333322 1 1222222 222335553444 4 36999988
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+++-.|..+ .| ..||-.+=+.|+|||.++|-|
T Consensus 147 ~vLh~~~de--~~--~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSDE--KC--IEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCHH--HH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCHH--HH--HHHHHHHHHHcCCCcEEEEEE
Confidence 888887321 23 357888889999999999854
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.03 E-value=0.013 Score=49.85 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=68.4
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC---------CCCCCeeEE
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---------YPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp---------fp~~sFD~I 112 (458)
....+||=+||| .|.++..+++.. ..+++++|.++.-++.|++.+....+..-...... ...+.+|+|
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 445689999999 667777676642 35899999999999999998876555432211110 012468988
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+-.- .....+..+.++|+|+|++++.....
T Consensus 103 id~~-------g~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 103 IDCS-------GNEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp EECS-------CCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred eecC-------CChHHHHHHHHHHhcCCceEEEecCC
Confidence 7431 11357889999999999999987543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0029 Score=54.41 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=65.8
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-CCCCCCeeEEEecccccc
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-PYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-pfp~~sFD~I~~~~~l~~ 120 (458)
.+..+||-+|+| .|.++..+++. ...+++++|.+++-++.|++.|....+...+.... .-..+.||+|+..-...+
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred CCCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 455799999998 67777777764 24589999999999999999886644432221111 112357998876421111
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ..+....++|+|+|++++...
T Consensus 104 -~----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 -D----IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp -T----CCTTTGGGGEEEEEEEEECCC
T ss_pred -c----chHHHHHHHhhccceEEEecc
Confidence 1 124567899999999999864
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.48 E-value=0.0044 Score=56.73 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=58.9
Q ss_pred CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc-ccccccccccccCCCCCCcccccccccccccc
Q 012709 305 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 305 ~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
+.+|.|+|+|||.|.++.+|.++-..+ .++-.|-|.++..+-+. .+-.+-||..+++|. .|..-..+++-.|
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~~vlh~~ 152 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTI---KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPK----ADAVFMKWICHDW 152 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTS---EEEEEECTTTTTTCCCCTTEEEEECCTTTCCCC----CSCEECSSSSTTS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCC---eEEEcccHHhhhhcccCCceEEecccccccCCC----cceEEEEEEeecC
Confidence 469999999999999999998653322 12222333333322222 255667887777664 2333223343333
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.. .. ...||=.+=+.|+|||.++|-
T Consensus 153 ~d--~~--~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 153 SD--EH--CLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp CH--HH--HHHHHHHHHHHCCSSSCEEEE
T ss_pred CH--HH--HHHHHHHHHHhcCCCceEEEE
Confidence 11 12 235788899999999999884
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.004 Score=58.41 Aligned_cols=134 Identities=11% Similarity=0.184 Sum_probs=80.9
Q ss_pred EeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cc---cccccccccccCCCCCCcccccccccccc
Q 012709 310 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 310 ~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rg---l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
|+|+|||+|.-|.+|....... .|+-+|-+ ..|.++-+ -| +-=+..||-++++. ..||+|=++-=+-
T Consensus 112 vlDlGtGSG~I~i~la~~~p~~---~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPYi 186 (274)
T d2b3ta1 112 ILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVSNPPYI 186 (274)
T ss_dssp EEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEECCCCB
T ss_pred eeeeehhhhHHHHHHHhhCCcc---eeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEecchhh
Confidence 8999999999999886433333 34444433 33333211 12 22245677777664 6899987653221
Q ss_pred c------------cccCCCCCC-------cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccce-EEEEeeccCC
Q 012709 382 L------------ESGHRHRCS-------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD-ARVIEIESNS 441 (458)
Q Consensus 382 ~------------~~~~~~~c~-------~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~-~~~~~~~~~~ 441 (458)
. +.+...-.. +..++-+.-+.|+|||++++-=..+--+.+++++..-.|. +.+.+ +-.+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~k-Dl~g 265 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR-DYGD 265 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE-CTTS
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEE-CCCC
Confidence 1 100001111 1257888899999999999953333357888898888885 55554 2234
Q ss_pred CccEEEEE
Q 012709 442 DERLLICQ 449 (458)
Q Consensus 442 ~~~~~~~~ 449 (458)
.+++++++
T Consensus 266 ~~R~v~~r 273 (274)
T d2b3ta1 266 NERVTLGR 273 (274)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEe
Confidence 58888875
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0062 Score=55.07 Aligned_cols=132 Identities=13% Similarity=0.103 Sum_probs=73.2
Q ss_pred ceeEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcccc---cccc-ccccccCC-----CCCCcccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFP-----TYPRTYDL 373 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl---~g~~-~~~~~~~~-----~yp~t~dl 373 (458)
+-++|+++|+++|-=+.+|.+. +-.|.+.=.-|......-..+-.-|+ |-+. .+-.+..+ -.+.+||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 4689999999999877777631 11222221111111011111222232 1111 12223222 12568999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEee
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
|..++--+.| ...+-++=+.|||||.+|+.|-. .+-+-.+.|.+.-+|++.+.-.
T Consensus 139 ifiD~dk~~y---------~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPi 209 (219)
T d2avda1 139 AVVDADKENC---------SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209 (219)
T ss_dssp EEECSCSTTH---------HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred EEEeCCHHHH---------HHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeec
Confidence 9966543333 34455566899999999985431 1223345567788899887743
Q ss_pred ccCCCccEEEEEe
Q 012709 438 ESNSDERLLICQK 450 (458)
Q Consensus 438 ~~~~~~~~~~~~k 450 (458)
. ++++||+|
T Consensus 210 g----dGl~ia~K 218 (219)
T d2avda1 210 G----DGLTLAFK 218 (219)
T ss_dssp T----TCEEEEEE
T ss_pred C----CeeEEEEe
Confidence 2 57999988
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.027 Score=48.08 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=65.7
Q ss_pred CCCCEEEEECC--CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEE
Q 012709 43 AGVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGC--G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I 112 (458)
.+..+||-.|+ |.|..+..+++.. ..++++++.+++..+.+++.|....+ +..+.. ...+.||+|
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d~v 101 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDII 101 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEecccccccccccccccc--CcccccccccccccccccccCccccc---ccccccHHHHhhhhhccCCceEE
Confidence 45579999997 3667777777642 35899999899989999988865433 222211 234679999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+..- ....+.+..++|+|+|+++....
T Consensus 102 ~d~~--------g~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 102 IEML--------ANVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp EESC--------HHHHHHHHHHHEEEEEEEEECCC
T ss_pred eecc--------cHHHHHHHHhccCCCCEEEEEec
Confidence 9752 13478889999999999999753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.81 E-value=0.03 Score=48.17 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---------CCCCCCCCeeEE
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLPYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---------~Lpfp~~sFD~I 112 (458)
..+.+||-+||| .|.+...+++... ..+|+++|.+++.++.|++.|....+-..+.. ++ .....||+|
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~Dvv 104 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGADFI 104 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEEEE
T ss_pred CCCCEEEEECCCccchhheecccccc-cccccccccccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCceEE
Confidence 345799999998 4677777776421 23799999999999999998865433221110 01 123459998
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+-.-. . ...++...+.|+|||++++...
T Consensus 105 id~vG------~-~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 105 LEATG------D-SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EECSS------C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred eecCC------c-hhHHHHHHHHhcCCCEEEEEee
Confidence 85421 1 2367889999999999988764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.64 E-value=0.003 Score=56.94 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=64.5
Q ss_pred ceeEEeeccccchhhhhhhhcc-CC--CeEEEEeecCCCCCCchhhhcccc---cccc-ccccccCCC-----CCCcccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEK-GK--SVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPT-----YPRTYDL 373 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~-~~--~~~~m~v~~~~~~~~l~~~~~rgl---~g~~-~~~~~~~~~-----yp~t~dl 373 (458)
+-++|+++|||+|..+.+|.+. .. .|+.+=+-|......-..+-.-|+ |-++ .+..+-.+. ...+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 4689999999999888877631 12 244332222111111112223354 1111 122222222 1257999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccceEEEE
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
++.++-.+.+ .....+.|.-|+|||||.+|+.| ..+.++.|++ .=+|+....
T Consensus 136 ifiD~~~~~~-------~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~~ 192 (214)
T d2cl5a1 136 VFLDHWKDRY-------LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHY 192 (214)
T ss_dssp EEECSCGGGH-------HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEEE
T ss_pred eeeccccccc-------ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehhh
Confidence 9866544433 12234677789999999888754 3455665554 446665554
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.57 E-value=0.036 Score=51.08 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=74.4
Q ss_pred cccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhccCC-CeEEEEeecCCC
Q 012709 263 EEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIG 341 (458)
Q Consensus 263 ~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~ 341 (458)
-.|..+....+.++.. . +..+ .+|+||+||.|+|+-.+..+.. .|+.+=+-|
T Consensus 88 ~~f~~~~~~er~ri~~---~----~~~g-----------------~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~--- 140 (260)
T d2frna1 88 IMFSPANVKERVRMAK---V----AKPD-----------------ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--- 140 (260)
T ss_dssp SCCCGGGHHHHHHHHH---H----CCTT-----------------CEEEETTCTTTTTHHHHHHHTCCEEEEECCCH---
T ss_pred ccEecCCHHHHHHHHh---h----cCCc-----------------cEEEECcceEcHHHHHHHHhCCcEEEEecCCH---
Confidence 3466677777776644 2 2233 5899999999999877663332 233222211
Q ss_pred CCCchhh----hcccc---ccccccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEec-
Q 012709 342 TNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD- 413 (458)
Q Consensus 342 ~~~l~~~----~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d- 413 (458)
+.+..+ -.-|+ |=+++.=+..|+. ...||.|..+-.. .-.+.|=+.=++|+|||++.+-+
T Consensus 141 -~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p~----------~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 141 -YTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV----------RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp -HHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS----------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCCC----------chHHHHHHHHhhcCCCCEEEEEec
Confidence 222222 11244 3333221222221 2368877633221 22344556678999999986532
Q ss_pred ---c---HHHHHHHHHHHhhccceEEEEe
Q 012709 414 ---T---ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 414 ---~---~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+ .+..+.+++++....+++....
T Consensus 209 ~~~~~~~~~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 209 VPEKLMPREPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp EEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHcCCceEEEE
Confidence 1 2346778888888888876654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.39 E-value=0.0072 Score=56.26 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=49.6
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCC-CCchhhhc---c---cccccc----ccccc-cCCCCCCccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGT-NHLPMILD---R---GFVGVL----HDWCE-AFPTYPRTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~-~~l~~~~~---r---gl~g~~----~~~~~-~~~~yp~t~d 372 (458)
-+|||.|||.|+++.+|... . -.|+.. +-. ..+..+-+ + +..... .|-++ +|+ ..+||
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~--~~~fD 170 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP--DGSVD 170 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--TTCEE
T ss_pred CEEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc--CCCcc
Confidence 37999999999999999632 1 123333 222 33333322 1 111111 12222 233 36899
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
.+.. ++-+.| .++=++-|+|||||.+++
T Consensus 171 aV~l-dlp~P~----------~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 171 RAVL-DMLAPW----------EVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp EEEE-ESSCGG----------GGHHHHHHHEEEEEEEEE
T ss_pred eEEE-ecCCHH----------HHHHHHHhccCCCCEEEE
Confidence 8763 122323 467789999999999887
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.35 E-value=0.035 Score=46.86 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=62.6
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
.+.++||=+||| .|.....+++.. ..+++++|.++.-++.+++.|....+...+ .+. ....+.+|.|.++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~~~~ 102 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLVTAV 102 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEECCS
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccccc-hhHHHHHHHhhcCCcccccccc
Confidence 345688889998 456666666543 358999999999999999988654332111 110 01123355555442
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+....+.|+|||++++...
T Consensus 103 ~--------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 103 S--------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp C--------HHHHHHHHTTEEEEEEEEECCC
T ss_pred c--------chHHHHHHHHhcCCcEEEEEEe
Confidence 1 3478889999999999999764
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.0069 Score=58.05 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.8
Q ss_pred EEeeccccchhhhhhhh
Q 012709 309 NVLDMNAHFGGFNSALL 325 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~ 325 (458)
.|+|+|||.|+++.+|.
T Consensus 101 rVLE~GtGsG~lt~~LA 117 (324)
T d2b25a1 101 TVLEAGSGSGGMSLFLS 117 (324)
T ss_dssp EEEEECCTTSHHHHHHH
T ss_pred EEEEecccccHHHHHHH
Confidence 69999999999999886
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.33 E-value=0.025 Score=49.81 Aligned_cols=101 Identities=13% Similarity=-0.007 Sum_probs=67.4
Q ss_pred CCCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCC--------CCCCeeEEE
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY--------PSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpf--------p~~sFD~I~ 113 (458)
....+||-+|||. |..+..+++.. -...|+.+|.++.-++.|++.|....+ +....++ ....+|+++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcEEEE
Confidence 4557999999997 55666666532 234899999999999999998854322 1111111 234689988
Q ss_pred ecccc------cc--ccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCG------VD--WDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l------~~--~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.-.. .. ........+..+.++++|||++++...
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 43110 00 111224689999999999999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.12 E-value=0.051 Score=46.67 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC------CCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp------fp~~sFD~I~~~ 115 (458)
....+||=+|||. |..+..+++... ..+|+++|.++.-++.|++.|....+..-+ .... .....||+|+-.
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhccCcceEEEc
Confidence 3456888899995 788888877521 237999999999999999988643332111 1110 123459998854
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-. . ...+.+..++|||+|.+++...
T Consensus 104 ~g------~-~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 104 GG------G-SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp SS------C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred cC------C-HHHHHHHHHHHhcCCEEEEEee
Confidence 21 1 2367888999999999999764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=94.06 E-value=0.006 Score=58.20 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=69.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----ccccc------cccccccccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFV------GVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl~------g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
+.|||++||.|||+.++. ..- -.|+-+|.. .-|..+- .-|+- +-.-+|.+.+...-.+||+|-.
T Consensus 147 ~rVLDl~~gtG~~s~~~a--~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLA--LGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEETCTTTHHHHHHH--HHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeeeccCCCCcHHHHHHH--hcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 789999999999998886 221 245555554 3333322 23441 1112333334444468999875
Q ss_pred ccc-ccccccC--CCCCCcchhhhhhcccccCCceEEEec------cHHHHHHHHHHHhhccceEEEEe
Q 012709 377 EGL-LSLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRD------TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 377 ~~~-~~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~~d------~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+-= |+.-+.. ........++-..=++|+|||.+++.. ..++.+.|.+-+..-..+.++..
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 431 2111000 000112367778889999999999853 23445555555666666666654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.00 E-value=0.016 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=18.3
Q ss_pred EEeeccccchhhhhhhhccCCCe
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSV 331 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~ 331 (458)
.|||+|||+|-++|.|......|
T Consensus 73 ~VLdIG~GsGy~ta~La~l~~~V 95 (224)
T d1vbfa_ 73 KVLEIGTGIGYYTALIAEIVDKV 95 (224)
T ss_dssp EEEEECCTTSHHHHHHHHHSSEE
T ss_pred eEEEecCCCCHHHHHHHHHhccc
Confidence 79999999999998886444433
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.64 E-value=0.14 Score=49.20 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=64.1
Q ss_pred CEEEEECCCCchhHHHHhh---------------cCCccceEEEEcCCHHHHHHHHHc------CCCeEEEe---eccCC
Q 012709 46 RTILDIGCGYGSFGAHLFS---------------KELLTMCIANYEASGSQVQLTLER------GLPAMIGS---FASKQ 101 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~---------------~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~---~d~~~ 101 (458)
-+|.|+||.+|..+..+.+ ...+..+|.-.|.-.+-....-+. ..+.-+.. +....
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 5799999999977744322 123456777777655433322211 11112222 22222
Q ss_pred CCCCCCCeeEEEecccccccccc---------------------------------HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 102 LPYPSLSFDMLHCARCGVDWDQK---------------------------------DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 102 Lpfp~~sFD~I~~~~~l~~~~~~---------------------------------~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
==||+++.|++||+.+ +||... -..+|+-=.+-|+|||+++++...
T Consensus 133 rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 2389999999999986 666321 024677777889999999998865
Q ss_pred CC
Q 012709 149 TN 150 (458)
Q Consensus 149 ~~ 150 (458)
..
T Consensus 212 r~ 213 (359)
T d1m6ex_ 212 RR 213 (359)
T ss_dssp CS
T ss_pred cC
Confidence 53
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.077 Score=44.95 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC-------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp-------fp~~sFD~I~~ 114 (458)
....+||=+|||. |..+..+++.. -..+|+++|.++.-++.|++.|....+...+..... .....+|+|+-
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 4456899999985 45555555432 123799999999999999998866544322111000 01246898886
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.-. . ...+....+.+++||++++.....
T Consensus 104 ~~G------~-~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG------A-EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC------C-HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC------C-chhHHHHHHHhcCCCEEEEEecCC
Confidence 421 2 447889999999999999987543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.017 Score=52.07 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=22.3
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
..||.|+..+.... +.-++=|.|+|||.+|+
T Consensus 149 ~~fD~I~~~~~~~~------------ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 149 APYDAIHVGAAAPV------------VPQALIDQLKPGGRLIL 179 (224)
T ss_dssp CCEEEEEECSBBSS------------CCHHHHHTEEEEEEEEE
T ss_pred hhhhhhhhhcchhh------------cCHHHHhhcCCCcEEEE
Confidence 47999996655443 23345578999999997
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.15 Score=48.17 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--CCCeEEEeecc
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFAS 99 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~~~~~~~~~d~ 99 (458)
....+.+.+.+..... .......+|||||.|.|.++..|++.+. ..+++++|+++..++..+++ +.+..+...|.
T Consensus 23 ~~i~~~Iv~~~~l~~~--~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKT--YKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGT--CCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHHhcCCcc--ccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 3445555555532211 1122456899999999999999987642 23799999999999888776 33566666654
Q ss_pred C
Q 012709 100 K 100 (458)
Q Consensus 100 ~ 100 (458)
.
T Consensus 100 l 100 (322)
T d1i4wa_ 100 Y 100 (322)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.25 E-value=0.07 Score=45.51 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=63.7
Q ss_pred CCCCEEEEECCCC-chhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~ 115 (458)
....+||=+|||. |..+..+++. +. ..++.+|.++.-++.|++.|..-.+. .+..+. .+.++.||+|+-.
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~--~~v~~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGA--SIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTC--SEEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCCEEEEeCCCHHHhhhhhccccccc--ceeeeeccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEEEEc
Confidence 4557899999984 3455555543 33 36788999999999999988643332 221111 1224579998843
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
- -....+.+..++++|+|++++...
T Consensus 104 ~-------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 104 T-------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp S-------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred C-------CcHHHHHHHHhcccCceEEEEEee
Confidence 1 113578899999999999999764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.85 E-value=0.15 Score=43.62 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC------CCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L------pfp~~sFD~I~~~ 115 (458)
....+||=+|||. |..+..+++.. -...|+.+|.++.-++.|++.|....+........ -...+.+|+|+-.
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 4457899999996 77777777753 13479999999999999999886554432111111 0123568998743
Q ss_pred cccccccccHHHHHHHHHhcccCC-cEEEEEeCC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPG-GYFVWTSPL 148 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPG-G~liis~~~ 148 (458)
- -....+.+..+.|+|| |.+++....
T Consensus 106 ~-------G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 106 A-------GTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp S-------CCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred c-------ccchHHHHHHHHhhcCCeEEEecCCC
Confidence 1 1245899999999996 999998753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.67 E-value=0.095 Score=43.83 Aligned_cols=97 Identities=9% Similarity=0.043 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC---C-CCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ---L-PYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~---L-pfp~~sFD~I~~~~~ 117 (458)
...++||=.|||.- .....+++.. ..+++++|.++.-++++++.|....+...+... + ....+.+|+|++..
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 102 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV- 102 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence 34568999999854 5555555542 348999999999999999987654433221100 0 01123455555431
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ...+....+.|+|||.+++.....
T Consensus 103 ------~-~~~~~~a~~~l~~~G~i~~~g~~~ 127 (168)
T d1rjwa2 103 ------S-KPAFQSAYNSIRRGGACVLVGLPP 127 (168)
T ss_dssp ------C-HHHHHHHHHHEEEEEEEEECCCCS
T ss_pred ------C-HHHHHHHHHHhccCCceEeccccc
Confidence 1 457889999999999999986533
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.087 Score=44.52 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...++||=+||| .|.++..+++.. ..+++.+|.+++-.+.+++.|....+...+........+.||+++-.-. -
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g---~ 103 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---A 103 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS---S
T ss_pred CCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee---c
Confidence 445788889998 467777777642 3477889999998899998886544332111111122357999885421 1
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...+....++|+|+|++++...
T Consensus 104 ----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 ----PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ----CCCHHHHHTTEEEEEEEEECCC
T ss_pred ----chhHHHHHHHHhcCCEEEEecc
Confidence 1246788899999999999864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=0.014 Score=57.57 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=19.4
Q ss_pred CcchhhhhhcccccCCceEEEec
Q 012709 391 STLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 391 ~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+...|-||=|+|||||.+|..+
T Consensus 311 ~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 311 DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHHhcCCCcEEEEec
Confidence 35577999999999999999854
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.79 E-value=0.11 Score=43.64 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=64.6
Q ss_pred CCCCEEEEECC-C-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGC-G-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGC-G-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp------fp~~sFD~I~~ 114 (458)
....+||=+|| | .|..+..+++.. -...|+.+|.++.-++++++.|....+- .+..+.. ...+.||+|+.
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~-g~~~V~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCEEEEEeccccceeeeeeccccc-ccccccccccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhcccchhhhc
Confidence 45579999997 3 555555555532 1248999999999999999988654332 2211110 12356999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-. ....+....+.|+|||.+++...
T Consensus 104 ~~g-------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 104 LNN-------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp SCC-------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred ccc-------cchHHHhhhhhcccCCEEEEecc
Confidence 421 24477888999999999998864
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=91.52 E-value=0.094 Score=48.55 Aligned_cols=154 Identities=11% Similarity=0.079 Sum_probs=87.4
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCc
Q 012709 267 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL 345 (458)
Q Consensus 267 ~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l 345 (458)
.||+.+-..+-.+.+.. ....|+|+|||.|..+.++.+. .+. +|+-+|-. .-+
T Consensus 93 peTE~lv~~~~~~~~~~----------------------~~~~vld~g~GsG~i~~~la~~-~~~---~v~a~Dis~~Al 146 (271)
T d1nv8a_ 93 PETEELVELALELIRKY----------------------GIKTVADIGTGSGAIGVSVAKF-SDA---IVFATDVSSKAV 146 (271)
T ss_dssp TTHHHHHHHHHHHHHHH----------------------TCCEEEEESCTTSHHHHHHHHH-SSC---EEEEEESCHHHH
T ss_pred hhhhhhhhhhhhhhccc----------------------cccEEEEeeeeeehhhhhhhhc-ccc---eeeechhhhhHH
Confidence 57788888776654432 2467999999999988888632 233 23444433 344
Q ss_pred hhhhc----ccc---cccc-ccccccCCCCCCccccccccccc-------cc---cccC----CCCCCcchhhhhhcccc
Q 012709 346 PMILD----RGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL-------SL---ESGH----RHRCSTLDIFTEIDRIL 403 (458)
Q Consensus 346 ~~~~~----rgl---~g~~-~~~~~~~~~yp~t~dl~h~~~~~-------~~---~~~~----~~~c~~~~~~~e~dril 403 (458)
.++-. -|+ +-++ .||-++++...-.||+|=++==. .. +.+. ...-++..+--=+-++|
T Consensus 147 ~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L 226 (271)
T d1nv8a_ 147 EIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD 226 (271)
T ss_dssp HHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhc
Confidence 43322 243 2333 35666665444578887654211 10 0000 00111221100035889
Q ss_pred cCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccCCCccEEEEEec
Q 012709 404 RPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 404 rp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
+|||++++-=..+--++|+++++...| ++ +-.+.+++++++|+
T Consensus 227 ~~~G~l~~Eig~~Q~~~v~~l~~~~g~----~k-Dl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 227 TSGKIVLMEIGEDQVEELKKIVSDTVF----LK-DSAGKYRFLLLNRR 269 (271)
T ss_dssp CTTCEEEEECCTTCHHHHTTTSTTCEE----EE-CTTSSEEEEEEECC
T ss_pred CCCCEEEEEECHHHHHHHHHHHHhCCE----Ee-ccCCCcEEEEEEEc
Confidence 999999996444446778888887665 21 23455899999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.03 Score=53.29 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=18.1
Q ss_pred cchhhhhhcccccCCceEEEe
Q 012709 392 TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 392 ~~~~~~e~drilrp~g~~~~~ 412 (458)
+...|.||=|.|+|||.+|.-
T Consensus 245 ~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 245 VDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHHHHTTCCTTCEEEES
T ss_pred HHHHHHHHHHhCCCCcEEEEe
Confidence 446789999999999999974
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.46 E-value=0.21 Score=43.73 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||+|+++.++..++.. .|+-++-. ..+.++.+ -|+- ..-.|.-...++..||+|=++-=|..
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~~----~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~~~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDVSEFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CEEEECcCcchHHHHHHHHcCCC----EEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECchhhhCCcCcEEEEcCcccc
Confidence 47999999999998766533321 22333332 33333332 1221 11112223445678999876666543
Q ss_pred cccCCCCCCcchhhhhhcccccCCce--EEEeccHHHHHHHHHHHhhccceEEEE
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGW--VIIRDTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~--~~~~d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
. ...+.+..+. +.+.+++. .+-.......+.+++++....|.+...
T Consensus 122 ~---~~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 122 Q---RKHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp S---STTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred c---cccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 3 3334443322 23344443 344556666677888888888876554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.11 E-value=0.033 Score=49.96 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=46.2
Q ss_pred EEeeccccchhhhhhhhcc-CCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCC--Ccccccccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP--RTYDLVHAEGLLSLESG 385 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp--~t~dl~h~~~~~~~~~~ 385 (458)
+|||+|||+|-.+|-|... +..|..+-+.+.-....-..+.+.|+-.+.--....+..+| ..||.|+..+-....
T Consensus 81 ~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~i-- 158 (215)
T d1jg1a_ 81 NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKI-- 158 (215)
T ss_dssp CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBSSC--
T ss_pred eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccccC--
Confidence 8999999999998877532 32344443322100000001122233211111122222222 469999965444332
Q ss_pred CCCCCCcchhhhhhcccccCCceEEE
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
..-|++ -|+|||.+|+
T Consensus 159 -------p~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 159 -------PEPLIE---QLKIGGKLII 174 (215)
T ss_dssp -------CHHHHH---TEEEEEEEEE
T ss_pred -------CHHHHH---hcCCCCEEEE
Confidence 334554 4899999986
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.88 E-value=0.046 Score=49.80 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=57.8
Q ss_pred CCceeEEeeccccchhhhhhhhccCCC--eEEEEeecCCCCCCchhhhccccccccccccccCCCCCCcccccccccccc
Q 012709 304 YNMVRNVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 304 ~~~~r~~~d~~~~~g~faa~l~~~~~~--~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
|+.+++|+|+|+|.|.++.++.++... +-|...-++-.. .+. -+ .+--+-||.=++. -.+|++...+++-
T Consensus 78 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~--~~~-~~-rv~~~~gD~f~~~----p~aD~~~l~~vLH 149 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN--LSG-SN-NLTYVGGDMFTSI----PNADAVLLKYILH 149 (244)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT--CCC-BT-TEEEEECCTTTCC----CCCSEEEEESCGG
T ss_pred ccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh--Ccc-cC-ceEEEecCcccCC----CCCcEEEEEeecc
Confidence 557899999999999999999865322 333332211111 110 01 1222334543332 3589999999998
Q ss_pred ccccCCCCCCcchhhhhhcccccCC---ceEEEe
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPE---GWVIIR 412 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~---g~~~~~ 412 (458)
.|..+ .| ..||=-+=+.|+|| |.++|-
T Consensus 150 dw~d~--~~--~~iL~~~~~al~pgg~~~~lli~ 179 (244)
T d1fp2a2 150 NWTDK--DC--LRILKKCKEAVTNDGKRGKVTII 179 (244)
T ss_dssp GSCHH--HH--HHHHHHHHHHHSGGGCCCEEEEE
T ss_pred cCChH--HH--HHHHHHHHHHcCcccCCcEEEEE
Confidence 88422 22 24566677889998 556653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.49 E-value=0.53 Score=39.97 Aligned_cols=99 Identities=9% Similarity=-0.090 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC------CCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp------fp~~sFD~I~~~ 115 (458)
....+||=+|||.. ..+..+++.. -..+|+++|.+++-++.|++.|....+-.-+..... ...+.+|+++-.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 45579999999844 4455554432 234899999999999999999876555322221110 123568877743
Q ss_pred cccccccccHHHHHHHH-HhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQKDGILLLEV-DRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei-~RvLkPGG~liis~~~~ 149 (458)
-. .+. .+.+. ..+++++|.+++.....
T Consensus 107 ~g------~~~-~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 107 IG------HLE-TMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp SC------CHH-HHHHHHTTSCTTTCEEEECSCCC
T ss_pred CC------chH-HHHHHHHHhhcCCeEEEEEEccc
Confidence 21 223 44444 44556669999987543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.30 E-value=0.34 Score=44.08 Aligned_cols=43 Identities=16% Similarity=0.046 Sum_probs=38.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
.....|||.=||+|+.+......|- +.+|+|++++.++.|++|
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFR 291 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGG
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHH
Confidence 3457999999999999998888764 899999999999999988
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.92 E-value=0.29 Score=41.28 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCCEEEEECC--CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGC--G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp------fp~~sFD~I~~ 114 (458)
.+.++||=.|+ |.|.++..+++.. ..+++++..+++..+.+++.|....+. ....++. .....||+|+.
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccccccccccc-CCccCHHHHHHHHhCCCCEEEEEe
Confidence 34578998774 3567777777652 358888888888889999887654332 1111110 13467999997
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.-. ...+.++.++|+|+|+++...
T Consensus 101 ~~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 101 SLA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp CCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred ccc--------chHHHHHHHHhcCCCEEEEEc
Confidence 532 236788899999999999875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=88.23 E-value=0.087 Score=46.45 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=51.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
++|+|+|||+|.+|-++...+-. +|+-++-. ..+.++-+. +.-..--|.-+...|..||+|=++=-|...
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~----~V~~vDid~~a~~~ar~N--~~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~--- 120 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRN--CGGVNFMVADVSEISGKYDTWIMNPPFGSV--- 120 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHH--CTTSEEEECCGGGCCCCEEEEEECCCC------
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC----cccccccCHHHHHHHHHc--cccccEEEEehhhcCCcceEEEeCcccchh---
Confidence 79999999999887544422321 34444432 444443321 111111122334457889998776655433
Q ss_pred CCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhh
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTR 427 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~ 427 (458)
....+. .+ ++..+.+++.+...-+....+-+++....
T Consensus 121 ~~~~D~--~f--l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 121 VKHSDR--AF--IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp ----CH--HH--HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred hhhchH--HH--HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 112222 22 34456666655443333444445554443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=88.10 E-value=0.098 Score=49.35 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=73.8
Q ss_pred ceeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCCCCchhhhc------cc------cccccccccccCCCCCCccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGTNHLPMILD------RG------FVGVLHDWCEAFPTYPRTYD 372 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~~~l~~~~~------rg------l~g~~~~~~~~~~~yp~t~d 372 (458)
.-|+||.+|.|.|+.+..++ .. ++--+=+|-.+. .-+.++-+ .| +==++.|.-+-....+++||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll--~~~~~~~v~~VEiD~-~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVL--KHPTVEKAVMVDIDG-ELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHT--TSTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CcceEEEeCCCchHHHHHHH--hcCCcceEEEecCCH-HHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 36899999999999998887 43 332222222221 11111100 00 00112233332234468899
Q ss_pred cccccccccccccCCCCCCc--chhhhhhcccccCCceEEEe------ccHHHHHHHHHHHhhccceEEEEeec--c-CC
Q 012709 373 LVHAEGLLSLESGHRHRCST--LDIFTEIDRILRPEGWVIIR------DTARLIESARALTTRLKWDARVIEIE--S-NS 441 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~--~~~~~e~drilrp~g~~~~~------d~~~~~~~~~~~~~~~~w~~~~~~~~--~-~~ 441 (458)
+|-.+. +..+........+ ...+-.+-|+|+|||.++.+ ...++...+.+.+++.=..+.....- + ++
T Consensus 154 vIi~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~ 232 (312)
T d1uira_ 154 VVIIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFL 232 (312)
T ss_dssp EEEEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTE
T ss_pred EEEEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCC
Confidence 998543 2222000001111 24567789999999999974 23345667766666655555554321 1 11
Q ss_pred CccEEEEEec
Q 012709 442 DERLLICQKP 451 (458)
Q Consensus 442 ~~~~~~~~k~ 451 (458)
.-.+++|.|.
T Consensus 233 ~w~f~~aS~~ 242 (312)
T d1uira_ 233 NFGFLLASDA 242 (312)
T ss_dssp EEEEEEEESS
T ss_pred CCEeEEEeCC
Confidence 2457777775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.88 E-value=1.2 Score=36.68 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=60.1
Q ss_pred EEEEECCCC-c-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 47 TILDIGCGY-G-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 47 ~VLDVGCG~-G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
+|+=||||. | +++..|.+.+. ..+|+++|.+++.++.|++.+.-........ ...+...|+|+..- +. ..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~dlIila~---p~-~~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTTSIA---KVEDFSPDFVMLSS---PV-RT 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEESCGG---GGGGTCCSEEEECS---CH-HH
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhhhhh---hhhccccccccccC---Cc-hh
Confidence 577799984 4 56666766653 5689999999999999999875433332111 11223578888652 11 12
Q ss_pred HHHHHHHHHhcccCCcEEEEEe
Q 012709 125 DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 125 ~~~~L~ei~RvLkPGG~liis~ 146 (458)
-..++.++...++++-.+.-..
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~~ 96 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQG 96 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEECC
T ss_pred hhhhhhhhhccccccccccccc
Confidence 3468889999999886555443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.70 E-value=0.55 Score=39.35 Aligned_cols=94 Identities=7% Similarity=0.008 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCc-hhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC-----CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYG-SFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G-~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp-----fp~~sFD~I~~~~ 116 (458)
+..+||=+|||.. ..+..+++. +. ..++++|.++.-++.+++.+....+. .+.+... ...+.+|+|+-.-
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~--~~vv~~~~~~~k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcC--cccccccchhHHHHHHhhcccceeec-CcccHHHHHHHhhCCCCceEEEEec
Confidence 4568999999854 444555543 32 37899999999999999887543322 1111100 1234699888542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ....+....+.|++||++++...
T Consensus 109 g-------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 109 G-------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp C-------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred C-------cchHHHHHHHHHhCCCEEEEEeC
Confidence 1 23478899999999999999874
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.66 E-value=0.12 Score=48.72 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=59.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccccccc-------cccccCCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLH-------DWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~-------~~~~~~~~yp~t~dl~h 375 (458)
.+|||++||.|+|+.++...+ .--|. -+|.. ..+..+ -.-|+-...+ +|-+.+..-..+||+|=
T Consensus 147 ~~VLDl~~g~G~~si~~a~~g-a~~V~---~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAG-ADEVI---GIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTT-CSEEE---EEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CeeecccCcccchhhhhhhcC-CcEEE---eecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 589999999999998776322 11222 22332 223322 1123322222 22222222346789886
Q ss_pred ccccc-cccccC--CCCCCcchhhhhhcccccCCceEEEecc------HHHHHHHHHHHhhc
Q 012709 376 AEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRL 428 (458)
Q Consensus 376 ~~~~~-~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~~d~------~~~~~~~~~~~~~~ 428 (458)
.+--- +.-+.. ........++...=++|+|||.+++... .++.+.|.+-+...
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~ 284 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKA 284 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHc
Confidence 43321 111000 0001233577788899999999998532 23445554444433
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.50 E-value=0.019 Score=48.34 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=50.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cccccccccc-CCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEA-FPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~~~~~~~~-~~~yp~t~dl~h~~~ 378 (458)
.+|+|++||+|+|+-..+.++-. +|.-++.. ..+..+-+ -|+ +-+++.=+.. +......||+|.++-
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~----~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP 91 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS----AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 91 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC----EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEcCCccCHHHHHHHHhCcc----eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence 57999999999999543311221 34444443 33332211 232 2233322222 233346899998764
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
=|... .....+ +.+.+ .++|+|+|.+|+..
T Consensus 92 Py~~~---~~~~~l-~~i~~-~~~L~~~g~iiiE~ 121 (152)
T d2esra1 92 PYAKE---TIVATI-EALAA-KNLLSEQVMVVCET 121 (152)
T ss_dssp SSHHH---HHHHHH-HHHHH-TTCEEEEEEEEEEE
T ss_pred hhccc---hHHHHH-HHHHH-CCCcCCCeEEEEEe
Confidence 43321 001111 22333 48999999999853
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.10 E-value=1 Score=37.89 Aligned_cols=99 Identities=9% Similarity=-0.097 Sum_probs=61.1
Q ss_pred cCCCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC------CCCCCCeeEEEe
Q 012709 42 LAGVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHC 114 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L------pfp~~sFD~I~~ 114 (458)
.....+||=+|||.. ..+..+++.. -..+|+++|.++.-++.|++.|....+-..+.... ....+.+|+|+-
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid 103 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 103 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence 345579999999854 4444455432 12489999999999999999886554422211110 012346888874
Q ss_pred ccccccccccHHHHHHHHHhccc-CCcEEEEEeCC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLK-PGGYFVWTSPL 148 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLk-PGG~liis~~~ 148 (458)
.-. . ...+.+....++ ++|.+++....
T Consensus 104 ~~g------~-~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 104 CAG------R-IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp CSC------C-HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred cCC------C-chHHHHHHHHHHHhcCceEEEEEe
Confidence 321 2 335666666665 56999987753
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.45 E-value=0.34 Score=41.82 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.6
Q ss_pred eEEeeccccchhhhhhhhc
Q 012709 308 RNVLDMNAHFGGFNSALLE 326 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~ 326 (458)
-+|+|.+||.|+|..++.+
T Consensus 21 ~~IlDp~~G~G~fl~~~~~ 39 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFRE 39 (223)
T ss_dssp CEEEEETCTTCHHHHHHHH
T ss_pred CEEEECCCchHHHHHHHHH
Confidence 3799999999999988864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.27 E-value=0.13 Score=43.59 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=61.3
Q ss_pred CCCCEEEEECC-C-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 43 AGVRTILDIGC-G-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 43 ~~~~~VLDVGC-G-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
.+.++||=.|+ | .|..+..+++.. .+++++++.+++..+.+++.|....+-..+....--..+.+|+|+-. + -
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~-~--G 100 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV-R--G 100 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC-S--C
T ss_pred CCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccccccceeeehhhhhhhhhccccccccccc-c--c
Confidence 34578998885 3 457777777652 35899999999999999998875444322211000112569998852 1 1
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
..+....+.|+|+|+++...
T Consensus 101 ------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 101 ------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp ------TTHHHHHTTEEEEEEEEEC-
T ss_pred ------hhHHHHHHHHhcCCcEEEEe
Confidence 13677889999999999865
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=86.08 E-value=0.6 Score=39.11 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=65.2
Q ss_pred CCCCEEEEECCC--CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG--~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp------fp~~sFD~I~~ 114 (458)
.+.++||=.|+| .|.....+++. ...++++++.|++-.+.+++.|....+- ....++. .....+|+|+.
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~-~~~~d~~~~v~~~t~g~g~d~v~d 103 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVIN-YREEDLVERLKEITGGKKVRVVYD 103 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEE-CCCCCHHHHHHHHhCCCCeEEEEe
Confidence 345789998666 56777777775 2459999999999999999988654332 1111110 12467999886
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-. ...+......|+|+|++++...
T Consensus 104 ~~g--------~~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 104 SVG--------RDTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp CSC--------GGGHHHHHHTEEEEEEEEECCC
T ss_pred Ccc--------HHHHHHHHHHHhcCCeeeeccc
Confidence 521 2257789999999999888654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=85.84 E-value=0.25 Score=42.64 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=72.3
Q ss_pred eeEEeeccccchhhhhhhhccC-C--CeEEEEeecCCCCCCchhhhcccccccccc---ccccCCCCCCccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKG-K--SVWVMNVVPTIGTNHLPMILDRGFVGVLHD---WCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~-~--~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~---~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-.+|+|.||+-|||.-++.+.- . .|+..-..|.+.-+. +.+-.|-++.... ..+.+. ...+|+|=+++.+
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~--~~~~~~d~~~~~~~~~~~~~~~--~~~~DlVlSD~ap 98 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVG--VDFLQGDFRDELVMKALLERVG--DSKVQVVMSDMAP 98 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTT--EEEEESCTTSHHHHHHHHHHHT--TCCEEEEEECCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCC--ceEeecccccchhhhhhhhhcc--CcceeEEEecccc
Confidence 4689999999999988776421 2 233333333322111 1122232222111 111111 2458998888877
Q ss_pred cccccCCCCCC--------cchhhhhhcccccCCceEEEe--ccHHHHHHHHHHHhhccceEEEEeecc---CCCccEEE
Q 012709 381 SLESGHRHRCS--------TLDIFTEIDRILRPEGWVIIR--DTARLIESARALTTRLKWDARVIEIES---NSDERLLI 447 (458)
Q Consensus 381 ~~~~~~~~~c~--------~~~~~~e~drilrp~g~~~~~--d~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~~~ 447 (458)
... .++-. ....|.=..++|+|||.||+. +..+ .+.+...++..=-++.+.+... .+.|.-+|
T Consensus 99 ~~s---g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv 174 (180)
T d1ej0a_ 99 NMS---GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 174 (180)
T ss_dssp CCC---SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEE
T ss_pred hhc---ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCEEEEECCCCcccCCceEEEE
Confidence 542 11100 112233356899999999984 3222 2334444554444567776553 34599999
Q ss_pred EEe
Q 012709 448 CQK 450 (458)
Q Consensus 448 ~~k 450 (458)
|+.
T Consensus 175 ~~g 177 (180)
T d1ej0a_ 175 ATG 177 (180)
T ss_dssp EEE
T ss_pred Eec
Confidence 974
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.64 E-value=0.4 Score=44.16 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC---CCCCCeeEEEecccccc-
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARCGVD- 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp---fp~~sFD~I~~~~~l~~- 120 (458)
+.+|+|+-||.|.+..-|.+.|+..-.+.++|+.+.+++.-+.+.....+...|+..+. ++...+|+++.+.-=-.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeecccccc
Confidence 35899999999998888877676333467999999999988887666666666766553 22236899987532011
Q ss_pred --------ccccHHHHHHHHHhcc-----cCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 121 --------WDQKDGILLLEVDRVL-----KPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 121 --------~~~~~~~~L~ei~RvL-----kPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..+....++.++.+++ ||- +++.+...... ....++.+...++++++....
T Consensus 82 S~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~-------~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T d1g55a_ 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFE-------VSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGG-------GSHHHHHHHHHHHHTTEEEEE
T ss_pred cccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcc-------cchhhHHHHhhhhccccccce
Confidence 1111223555666654 465 34444433221 112356667777778876543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=85.58 E-value=0.89 Score=39.80 Aligned_cols=43 Identities=12% Similarity=-0.059 Sum_probs=37.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
..+..|||-=||+|+.+....+.+- +.+|+|+++.-++.|++|
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 3457999999999999998888763 899999999999999886
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.49 E-value=0.99 Score=38.01 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=66.9
Q ss_pred CCCCEEEEECCCC--chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~--G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~ 115 (458)
.+.++||=.|++. |..+..+++.. .++++++..+++..+.+++.+....+...+.... -...+.+|+|+-.
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence 4567899888854 57777777753 4599999999999999999886655432221110 0123569999854
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
- ....+.+..++|+|||.+++...
T Consensus 106 v--------G~~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 106 V--------GGEFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp S--------CHHHHHHHGGGEEEEEEEEECCC
T ss_pred c--------CchhhhhhhhhccCCCeEEeecc
Confidence 1 14578999999999999999753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.92 E-value=1.3 Score=36.58 Aligned_cols=95 Identities=9% Similarity=-0.095 Sum_probs=62.4
Q ss_pred CCCCEEEEECCC-CchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC------CCCCCCeeEEEe
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L------pfp~~sFD~I~~ 114 (458)
.+..+||=+||| .|.++..+++. +. ..|+++|.++.-.+.+++.|....+...+.... ....+.+|+|+-
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~--~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid 104 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGA--SRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 104 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhc--CceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeee
Confidence 455789999998 33555555543 32 378999999999999999886554432221111 011356899985
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.- -...+++....++++||.+++..
T Consensus 105 ~~-------G~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 105 CI-------GNVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp CS-------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred cC-------CCHHHHHHHHHhhcCCceeEEEE
Confidence 42 12357888999999998877654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=84.68 E-value=0.39 Score=43.68 Aligned_cols=71 Identities=15% Similarity=0.011 Sum_probs=51.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHH---HHHc----C-------CCeEEEeeccCC-CCCCCCCe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL---TLER----G-------LPAMIGSFASKQ-LPYPSLSF 109 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~---A~er----~-------~~~~~~~~d~~~-Lpfp~~sF 109 (458)
..+|||.=||.|..+..++..|. +|+++|-++.+... +.++ . .++.+..+|+.. +.-...+|
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~ 165 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP 165 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred CCEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence 34899999999999999999875 89999999865433 2222 1 146778777544 33335679
Q ss_pred eEEEecccc
Q 012709 110 DMLHCARCG 118 (458)
Q Consensus 110 D~I~~~~~l 118 (458)
|+|+.--.+
T Consensus 166 DvIYlDPMF 174 (250)
T d2oyra1 166 QVVYLDPMF 174 (250)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999976543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=84.45 E-value=2.3 Score=34.89 Aligned_cols=87 Identities=16% Similarity=0.071 Sum_probs=57.8
Q ss_pred EEEEECCC--CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 47 TILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 47 ~VLDVGCG--~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
+|.=||+| -+.++..|.+.++ +|+++|.+++.++.|++.+.-.... -+.+.+ ...|+|+.+ .+.. .
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~DiIila---vp~~-~ 69 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQSTCEKAVERQLVDEAG-QDLSLL----QTAKIIFLC---TPIQ-L 69 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTSCSEEE-SCGGGG----TTCSEEEEC---SCHH-H
T ss_pred EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHhhccceee-eecccc----ccccccccc---CcHh-h
Confidence 56668887 3356677777776 8999999999999998887422221 111111 457888854 2222 3
Q ss_pred HHHHHHHHHhcccCCcEEEEE
Q 012709 125 DGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 125 ~~~~L~ei~RvLkPGG~liis 145 (458)
-..+++++...|+++-.++-.
T Consensus 70 ~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 70 ILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHHHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhhhhhcccccceeec
Confidence 347889999888888866544
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=84.43 E-value=1.7 Score=38.98 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=90.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccch--hhhhhhhccCCCeEEEEeecCCCC--
Q 012709 267 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 342 (458)
Q Consensus 267 ~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g--~faa~l~~~~~~~~~m~v~~~~~~-- 342 (458)
...+.|.+++-.=..++. . ++.+.-.+++|+|+|-| |.--|+. ... + +|.-+++.
T Consensus 47 ~~~~i~~rHi~DSl~~~~-~---------------~~~~~~~~ilDiGSGaGfPGi~laI~--~p~-~--~v~Lves~~K 105 (239)
T d1xdza_ 47 EKKEVYLKHFYDSITAAF-Y---------------VDFNQVNTICDVGAGAGFPSLPIKIC--FPH-L--HVTIVDSLNK 105 (239)
T ss_dssp SHHHHHHHTHHHHHGGGG-T---------------SCGGGCCEEEEECSSSCTTHHHHHHH--CTT-C--EEEEEESCHH
T ss_pred CHHHHHHHhccchhhhhh-h---------------hcccCCCeEEeecCCCchHHHHHHHh--CCC-c--cceeecchHH
Confidence 345778887765333332 2 22335678999999866 3333433 221 1 34434442
Q ss_pred --CCch-hhhcccc--ccccccccccCCC---CCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE---
Q 012709 343 --NHLP-MILDRGF--VGVLHDWCEAFPT---YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII--- 411 (458)
Q Consensus 343 --~~l~-~~~~rgl--~g~~~~~~~~~~~---yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~--- 411 (458)
+=|. ++-+=|| +=++|+..|.+.. +.-.||+|=|-. =.++..++-=....|+|||.+++
T Consensus 106 K~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA----------va~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 106 RITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA----------VARLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp HHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC----------CSCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh----------hhCHHHHHHHHhhhcccCCEEEEECC
Confidence 2233 4555577 4568888887643 345789886322 24445555556899999999998
Q ss_pred eccHHHHHHHHHHHhhccceEEEE-eec---cCCCccEEEEEecc
Q 012709 412 RDTARLIESARALTTRLKWDARVI-EIE---SNSDERLLICQKPF 452 (458)
Q Consensus 412 ~d~~~~~~~~~~~~~~~~w~~~~~-~~~---~~~~~~~~~~~k~~ 452 (458)
++-.+.+++.++..+.+.++.... ..+ .+++-.+++.+|.=
T Consensus 176 ~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 176 ASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp C-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred CChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECC
Confidence 355566777777778888875433 222 22334677777653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.07 E-value=0.77 Score=39.14 Aligned_cols=96 Identities=13% Similarity=0.117 Sum_probs=66.0
Q ss_pred CCCEEEEECCC--CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc--CC-CCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG--~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~--~~-Lpfp~~sFD~I~~~~~l 118 (458)
..++||=.|++ .|.++..|++.. ..+++++-.|++-.+.+++.|....+-.-+. +. .....+.||+|+=+-.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg- 107 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG- 107 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST-
T ss_pred CCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC-
Confidence 34689998864 668888888652 4588999999988999998877654421111 11 1223467999885421
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...+.+..++|+|||+++......
T Consensus 108 -------g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 108 -------GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp -------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred -------chhHHHHHHHhCCCceEEEeeccc
Confidence 236889999999999999987643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.75 E-value=1.9 Score=35.78 Aligned_cols=98 Identities=10% Similarity=-0.085 Sum_probs=61.8
Q ss_pred cCCCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC------CCCCCCeeEEEe
Q 012709 42 LAGVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHC 114 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L------pfp~~sFD~I~~ 114 (458)
....++||=+|||.+ .....+++. .-...|+++|.++.-.+.+++.+....+...+..+. -...+.+|+|+-
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid 104 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE 104 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEe
Confidence 345679999999744 344444443 224589999999999999999986654433322211 012357899885
Q ss_pred ccccccccccHHHHHHHHHhcccCC-cEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPG-G~liis~~ 147 (458)
.-. ....+......+++| |.+++...
T Consensus 105 ~~G-------~~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 105 VIG-------RLDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp CSC-------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred cCC-------chhHHHHHHHHHhcCCcceEEecC
Confidence 422 133667777788886 56666544
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=81.19 E-value=8.5 Score=34.56 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=74.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-CCCeeEEEeccccccc-
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDW- 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~- 121 (458)
...+|||+=||-|.+..-|.+.|+. .+.++|+.+.+++.-+.+..... ..|...+... -..+|+++.+.-=-.+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~--~v~a~e~d~~a~~~~~~N~~~~~--~~Di~~~~~~~~~~~Dll~ggpPCq~fS 85 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CCCeEEEECccccHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHHCCCCC--cCchhcCchhhcceeeeeecccccchhh
Confidence 4579999999999999999888873 46789999999988877744332 3455554321 1358999975310001
Q ss_pred -------cccHH-HHHH---HHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 122 -------DQKDG-ILLL---EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 122 -------~~~~~-~~L~---ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..++. .++. ++.+.++|.= ++.+..... ...+....++.+...++++++....
T Consensus 86 ~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~--~~lENV~~~----~~~~~~~~~~~i~~~l~~lGY~~~~ 149 (327)
T d2c7pa1 86 ISGKQKGFEDSRGTLFFDIARIVREKKPKV--VFMENVKNF----ASHDNGNTLEVVKNTMNELDYSFHA 149 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHHHHHHHCCSE--EEEEEEGGG----GTGGGGHHHHHHHHHHHHTTBCCEE
T ss_pred hhhhhcCCcccchhHHHHHHHHHhccCCcE--Eecccchhh----hhhccchhhHHhhhHHHhcCCccee
Confidence 11211 2344 4445578863 333332211 1122334456666667777765443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.19 E-value=1.2 Score=39.34 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=37.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
..+..|||-=||+|..+......+- +.+|+|+++..++.|++|
T Consensus 206 ~~gdiVLDpF~GSGTT~~Aa~~lgR---~~ig~El~~~y~~~a~~R 248 (279)
T d1eg2a_ 206 HPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQ 248 (279)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHH
T ss_pred CCCCEEEecCCCCcHHHHHHHHhCC---eEEEEeCCHHHHHHHHHH
Confidence 3456999999999999888877663 899999999999999987
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.80 E-value=0.26 Score=42.22 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=62.6
Q ss_pred CCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-CCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
.+.+|+=+|+|+. ..+...+.+ ....|+.+|.+++.++..... +........+.+.+.-.-...|+|+++ ++.+-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~a-alipG 107 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGA-VLVPG 107 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEEC-CCCTT
T ss_pred CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEe-eecCC
Confidence 4679999999965 444444443 245899999999988776654 223444333322221111358999987 44554
Q ss_pred cccHHHHHHHHHhcccCCcEEEE
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~lii 144 (458)
...|.-+=+++.+..|||..++=
T Consensus 108 ~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 108 RRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp SSCCCCBCHHHHTTSCTTCEEEE
T ss_pred cccCeeecHHHHhhcCCCcEEEE
Confidence 44445556789999999987664
|