Citrus Sinensis ID: 012717

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRTK
cEEEEEccccccccccEEEEEEccEEEEEEccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHcccccccccccccccHHHHHHHHHccEEEccccEEEEcccEEEEEEccccccccEEEEEEccccEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHccccccccccccccccEEccccccccccccccccEEEEEcccEEEEEEEEEEcc
cEEEEEccccccccccEEEEEEcccEEEEcccccHHHHHHcccccccccccccccccccHHHHHcHHHHHccccEEEccccccccccccccHccEEEEEEEccHHHcccHHHHEccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccHHHHHHccccHHHccccccccccccccccHHHHHHHHccEEEEEccEEEEEccEEEEEEEccccEEcHHEEEEEEcccEEEEEccccccccccccHHHcccccccEEEEEEccccccccccccccEccccccccccEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccEEEEEcccHHHccccHHHHHHHcccccccEEEEEEEEccc
mkftclcqgggfnfppchilnvsgfhvlfdcpldlsaltvfsplpndFYKAICKensdsqnrqkvekpldandlifaepwyktvnnlhlWNVSFIDVVLisspmgmlglpfltrmegfsAKIYITEAAARIGQLMMEELICMNMEYrqfygaeessgpqwmkwEELELLPSALRKIalgedgselgggcpciaHVKDCISKVqtlrfgeeacYNGILIIKAFSsgldigacnwiisgakgniayisgsnfasghamdfdyraiqgsdlilysdlssldstedidqssfsddnnNWEELMNSLSNYDESVEEMEKLAFICSCAIdsvkaggsvlipiNRVGVFLQLLEQIAIFMEcsslkipiYIISSVAEELLAYTNTIPEWLCKQRqeklfsgdplFAHVKLIKekkihvfpavhspkllnlascflptgvcglvppficfdaGVGIITLYLFLRTK
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKEnsdsqnrqkvekPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDidqssfsddnnnWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRTK
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGsdlilysdlssldstedidQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRTK
**FTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICK***************DANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDL*************************************MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFL***
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYR*****************************ALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNS**********MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRT*
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRTK
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRT*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIITLYLFLRTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query458 2.2.26 [Sep-21-2011]
A7SBF0 660 Integrator complex subuni N/A no 0.814 0.565 0.286 3e-40
Q6DFF4 658 Integrator complex subuni N/A no 0.812 0.565 0.273 1e-39
Q5ZKK2 658 Integrator complex subuni yes no 0.807 0.562 0.272 2e-39
Q4R5Z4 637 Integrator complex subuni N/A no 0.777 0.558 0.276 6e-39
Q2KJA6 658 Integrator complex subuni yes no 0.807 0.562 0.272 3e-38
Q9NV88 658 Integrator complex subuni yes no 0.807 0.562 0.269 5e-38
Q8K114 658 Integrator complex subuni yes no 0.807 0.562 0.269 8e-37
Q54SH0 712 Integrator complex subuni yes no 0.818 0.526 0.247 5e-28
Q9CWS4 600 Integrator complex subuni no no 0.534 0.408 0.215 8e-05
Q3MHC2 600 Integrator complex subuni no no 0.534 0.408 0.215 9e-05
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1 Back     alignment and function desciption
 Score =  166 bits (421), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 207/429 (48%), Gaps = 56/429 (13%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLP---NDFYKAICKENS 57
           MK  C+   G     PC +L     +++ DC LD+S +  F+PL    N+ +  +  ++ 
Sbjct: 1   MKLYCV---GHSVSSPCLVLQFKQTNIMLDCGLDMSTVNQFTPLSLVNNEKFSQL--KSW 55

Query: 58  DSQNRQKVEKPLDANDL--------IFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGL 109
            S+  Q++E     N+L        I AEP         L + S +DV+LIS+   ML L
Sbjct: 56  SSRELQEIEGFTAQNNLKEAGGRLFIDAEPEV-CPPETGLIDFSMVDVILISNYHHMLAL 114

Query: 110 PFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 169
           PF+T   GF+ KIY TE   +IG+ +M EL+            +  +G  W     +  L
Sbjct: 115 PFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNVIRCL 169

Query: 170 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIG 229
           P+ L ++A  +    L         VK CISK+Q + + E+    GIL + A SSG  +G
Sbjct: 170 PAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSGFCLG 225

Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
           + NW++      I+Y+S S+  + H +  +   ++ SD+++ + ++              
Sbjct: 226 SSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA------------ 273

Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
                       + N D  + E       C+    +++AGG+VL+P    GV   L E +
Sbjct: 274 -----------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDLFECL 316

Query: 350 AIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKK 408
             +++ + L  +PIY IS VA+  LAY+N   EWLC+ +Q K++  +P F H +L+KE +
Sbjct: 317 YTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELLKEAR 376

Query: 409 IHVFPAVHS 417
           + VF  +H+
Sbjct: 377 LKVFSNLHN 385
Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing.
Nematostella vectensis (taxid: 45351)
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1 Back     alignment and function description
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2 Back     alignment and function description
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1 Back     alignment and function description
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1 Back     alignment and function description
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
255558732 705 conserved hypothetical protein [Ricinus 0.919 0.597 0.607 1e-152
359495046 774 PREDICTED: integrator complex subunit 9 0.923 0.546 0.633 1e-151
356541557 794 PREDICTED: LOW QUALITY PROTEIN: integrat 0.921 0.531 0.586 1e-145
297829304 699 hypothetical protein ARALYDRAFT_896920 [ 0.919 0.602 0.550 1e-136
449457454 693 PREDICTED: integrator complex subunit 9 0.917 0.606 0.585 1e-136
30680341 699 integrator complex subunit 9 [Arabidopsi 0.919 0.602 0.543 1e-129
449520481 680 PREDICTED: integrator complex subunit 9 0.779 0.525 0.604 1e-117
147863921 665 hypothetical protein VITISV_004722 [Viti 0.652 0.449 0.589 1e-100
218192422 713 hypothetical protein OsI_10713 [Oryza sa 0.877 0.563 0.426 2e-95
222624545 713 hypothetical protein OsJ_10103 [Oryza sa 0.877 0.563 0.426 2e-95
>gi|255558732|ref|XP_002520390.1| conserved hypothetical protein [Ricinus communis] gi|223540437|gb|EEF42006.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/448 (60%), Positives = 352/448 (78%), Gaps = 27/448 (6%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENS--- 57
           MKFTCL +G GF+FPPC IL++SG+ +LFDCPLDLS+LT+FSP+P DF   + +E+    
Sbjct: 1   MKFTCLSKGNGFHFPPCCILDMSGYRILFDCPLDLSSLTIFSPVPADFCPILPEEHPNCS 60

Query: 58  ---------DSQNRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLG 108
                    ++     +EKPLD  +LI+AEPWYKT  NLHLW+ S ID+VLISS MGMLG
Sbjct: 61  LHDSLRVELETGKMWGMEKPLDVQNLIYAEPWYKTAKNLHLWDPSSIDIVLISSTMGMLG 120

Query: 109 LPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 168
           LPFLT+ +GFSAKIY TEA AR+GQL+ME+L+ M++E+RQFYG+EES  PQWM+WEELEL
Sbjct: 121 LPFLTQCKGFSAKIYATEATARVGQLIMEDLVSMHVEFRQFYGSEESD-PQWMRWEELEL 179

Query: 169 LPSALRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKAFSSGL 226
           LPS LR++ LG+DGSELG   P  +   VKDC+ K++ L++ E ACYNG L+IKAFSSG+
Sbjct: 180 LPSELREVTLGKDGSELGAWFPLYSSVDVKDCMQKIEMLKYAEAACYNGELVIKAFSSGI 239

Query: 227 DIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ- 285
           +IG+CNW+I G K N+A++S S F S HAM+FDY A++G+DLILYSD SS D  ED++Q 
Sbjct: 240 EIGSCNWLIEGPKENMAWVSSSIFLSTHAMEFDYHALRGTDLILYSDFSSQDVIEDVEQH 299

Query: 286 -----------SSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLI 334
                      SS S D +NW+EL + L + DES+EE +KLAF+CSC + SVKAGGSVL+
Sbjct: 300 ESYFVSANHNLSSLSADGDNWKELNDCLLSNDESIEESDKLAFLCSCVVGSVKAGGSVLV 359

Query: 335 PINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSG 394
           P+NR+G+ +QLLEQI+IF+E S++K+PIY+ISSVA ELLA+TN IPEWLCK RQEKLFSG
Sbjct: 360 PLNRLGIIMQLLEQISIFLESSAIKVPIYVISSVAAELLAFTNIIPEWLCKFRQEKLFSG 419

Query: 395 DPLFAHVKLIKEKKIHVFPAVHSPKLLN 422
           +PLF+HV+L+K+KK+HVFPAVHSP L+ 
Sbjct: 420 EPLFSHVELMKDKKLHVFPAVHSPNLIT 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495046|ref|XP_002265081.2| PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera] gi|296081277|emb|CBI17721.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541557|ref|XP_003539241.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like [Glycine max] Back     alignment and taxonomy information
>gi|297829304|ref|XP_002882534.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] gi|297328374|gb|EFH58793.1| hypothetical protein ARALYDRAFT_896920 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449457454|ref|XP_004146463.1| PREDICTED: integrator complex subunit 9 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|30680341|ref|NP_187409.2| integrator complex subunit 9 [Arabidopsis thaliana] gi|332641036|gb|AEE74557.1| integrator complex subunit 9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449520481|ref|XP_004167262.1| PREDICTED: integrator complex subunit 9 homolog, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|147863921|emb|CAN78953.1| hypothetical protein VITISV_004722 [Vitis vinifera] Back     alignment and taxonomy information
>gi|218192422|gb|EEC74849.1| hypothetical protein OsI_10713 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222624545|gb|EEE58677.1| hypothetical protein OsJ_10103 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query458
TAIR|locus:2079696 699 AT3G07530 "AT3G07530" [Arabido 0.919 0.602 0.522 8.3e-122
ZFIN|ZDB-GENE-061013-129 658 ints9 "integrator complex subu 0.543 0.378 0.287 3.9e-36
UNIPROTKB|G3XAN1525 INTS9 "Integrator complex subu 0.539 0.470 0.278 2.9e-33
UNIPROTKB|Q5ZKK2 658 INTS9 "Integrator complex subu 0.539 0.375 0.271 4.4e-33
UNIPROTKB|Q9NV88 658 INTS9 "Integrator complex subu 0.539 0.375 0.278 8.4e-33
UNIPROTKB|F1MMA6 658 INTS9 "Integrator complex subu 0.539 0.375 0.278 1.4e-32
UNIPROTKB|Q2KJA6 658 INTS9 "Integrator complex subu 0.539 0.375 0.278 1.4e-32
UNIPROTKB|F6XI08 658 INTS9 "Uncharacterized protein 0.539 0.375 0.278 2.2e-32
MGI|MGI:1098533 658 Ints9 "integrator complex subu 0.539 0.375 0.278 9.7e-32
RGD|1311539 659 Ints9 "integrator complex subu 0.513 0.356 0.279 2.2e-31
TAIR|locus:2079696 AT3G07530 "AT3G07530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 228/436 (52%), Positives = 306/436 (70%)

Query:     1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPN----DFYKAICKEN 56
             M+ TCL +G GF++PPCH+LN+ GF +L DCPLDLSA+ +FSP+P+    +  + +  E+
Sbjct:     1 MELTCLSKGDGFHYPPCHMLNLCGFRILIDCPLDLSAIKIFSPVPSGVGSEASEYLSDES 60

Query:    57 SDSQN----RQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSPMGMLGLPFL 112
              D+QN    +QK+E+ L   DL+  EPWYKTV  LHLW  SFID+VLIS+PMG+LGLPFL
Sbjct:    61 LDAQNPIQKKQKLERQLTCADLVCEEPWYKTVKALHLWEASFIDIVLISNPMGLLGLPFL 120

Query:   113 TRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172
             T+  GF AKIY+TE  A+IGQLMME+++ M+ E+R F+G + SS P W+K  + E +P+ 
Sbjct:   121 TQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPGWIKNLDSEQVPAL 180

Query:   173 LRKIALGEDGSELGGGCPCIA--HVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGA 230
             L+K+  GE G +LG      +   ++ C+ KVQ ++F EE CYNG LIIKA SSGLDIGA
Sbjct:   181 LKKVVFGESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNGTLIIKALSSGLDIGA 240

Query:   231 CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGXXXXXXXXXXXXXXXXXXXQSSFS- 289
             CNW+I+G  G+++Y+S S F S HA  FD+  ++                        S 
Sbjct:   241 CNWLINGPNGSLSYVSDSIFVSHHARSFDFHGLKETDVLIYSDFSSLQSAEVTEDGCISP 300

Query:   290 DDNNNW----EELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQL 345
             D +NN+     +  +SL N ++S+EEMEKLAF+CSCA +S  AGGS LI I R+G+ LQL
Sbjct:   301 DSDNNYISTISDNKDSLLNTEDSLEEMEKLAFVCSCAAESADAGGSTLITITRIGIVLQL 360

Query:   346 LEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIK 405
             LE ++  +E SSLK+PI++ISSVAEELLAYTNTIPEWLC+QRQEKL SG+P F H+K IK
Sbjct:   361 LELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWLCEQRQEKLISGEPSFGHLKFIK 420

Query:   406 EKKIHVFPAVHSPKLL 421
              KKIH+FPA+HSP L+
Sbjct:   421 NKKIHLFPAIHSPNLI 436
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-061013-129 ints9 "integrator complex subunit 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3XAN1 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKK2 INTS9 "Integrator complex subunit 9" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NV88 INTS9 "Integrator complex subunit 9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJA6 INTS9 "Integrator complex subunit 9" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6XI08 INTS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1098533 Ints9 "integrator complex subunit 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311539 Ints9 "integrator complex subunit 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 3e-06
smart01027126 smart01027, Beta-Casp, Beta-Casp domain 4e-06
pfam10996124 pfam10996, Beta-Casp, Beta-Casp domain 5e-05
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 84/296 (28%)

Query: 95  IDVVLISS----PMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY 150
           +D VL++      +G   LP+L R  GF   +Y T   A + ++++ + + +     +  
Sbjct: 50  VDAVLLTHAHLDHIG--ALPYLVR-NGFEGPVYATPPTAALLKVLLGDSLKLAEGPDKPP 106

Query: 151 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEE 210
            +EE                                        V+     ++ L +GE 
Sbjct: 107 YSEED---------------------------------------VERVPDLIRPLPYGEP 127

Query: 211 ACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDF---DYRAIQGSD 267
               G+  +  +++G  +G+   ++    G I Y       +G   D      R + G++
Sbjct: 128 VEVGGV-KVTFYNAGHILGSAAILLEVDGGRILY-------TG---DVKRRKDRLLNGAE 176

Query: 268 LILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVK 327
           L    D+  ++ST       + D         N        +E ++  A +         
Sbjct: 177 LPPCIDVLIVEST-------YGDR-----LHPNRDEVERRFIESVK--AALER------- 215

Query: 328 AGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 383
            GG+VLIP   +G   +LL  +       +   PIY+   +A   LAY        
Sbjct: 216 -GGTVLIPAFALGRAQELLLILRELG--FAGDYPIYVDGPIARVALAYAKYPIGLD 268

Length = 427
>gnl|CDD|214983 smart01027, Beta-Casp, Beta-Casp domain Back     alignment and domain information
>gnl|CDD|220932 pfam10996, Beta-Casp, Beta-Casp domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 458
COG1782637 Predicted metal-dependent RNase, consists of a met 100.0
KOG1138 653 consensus Predicted cleavage and polyadenylation s 100.0
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1136 501 consensus Predicted cleavage and polyadenylation s 100.0
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 100.0
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 100.0
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 100.0
TIGR00649422 MG423 conserved hypothetical protein. Contains an 99.94
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.81
PF10996126 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T 99.71
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.66
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.57
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.53
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.53
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.52
PRK02113252 putative hydrolase; Provisional 99.52
PRK00055270 ribonuclease Z; Reviewed 99.43
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.37
PRK00685228 metal-dependent hydrolase; Provisional 99.32
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.27
PRK04286298 hypothetical protein; Provisional 99.25
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.22
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.08
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.0
PRK02126334 ribonuclease Z; Provisional 98.95
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 98.9
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 98.86
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 98.68
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 98.65
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 98.55
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.45
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 98.43
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.33
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 98.32
PRK11539755 ComEC family competence protein; Provisional 98.29
PLN02469258 hydroxyacylglutathione hydrolase 98.26
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.15
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.12
PLN02398329 hydroxyacylglutathione hydrolase 98.12
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 98.02
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 97.92
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 97.89
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 97.88
KOG1361481 consensus Predicted hydrolase involved in interstr 97.84
PLN02962251 hydroxyacylglutathione hydrolase 97.73
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 97.71
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 97.2
KOG0813265 consensus Glyoxylase [General function prediction 96.44
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 94.58
PF1369163 Lactamase_B_4: tRNase Z endonuclease 92.88
KOG1137668 consensus mRNA cleavage and polyadenylation factor 92.33
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 90.82
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-64  Score=502.66  Aligned_cols=343  Identities=20%  Similarity=0.268  Sum_probs=285.1

Q ss_pred             EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717            2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY   81 (458)
Q Consensus         2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~   81 (458)
                      ++|+|||. .|||+||+||++.+.+||||||++.+..                                .   .++.|++
T Consensus       182 Rvt~LGg~-~EVGRSa~lv~T~eSrVLlDcG~n~a~~--------------------------------~---~~~~Pyl  225 (637)
T COG1782         182 RVTALGGF-REVGRSALLVSTPESRVLLDCGVNVAGN--------------------------------G---EDAFPYL  225 (637)
T ss_pred             EEEeeccc-hhccceeEEEecCCceEEEeccccCCCC--------------------------------c---cccCccc
Confidence            68999999 5999999999999999999999997630                                0   1236776


Q ss_pred             cccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcc
Q 012717           82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQ  159 (458)
Q Consensus        82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~~  159 (458)
                      +.|.    +.+..+|||+||||  ||||.||+|++ +||+||||||.||++|.-+++.|++.+.+.              
T Consensus       226 ~vpE----~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~k--------------  286 (637)
T COG1782         226 DVPE----FQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEK--------------  286 (637)
T ss_pred             cccc----ccccccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHh--------------
Confidence            6552    45568999999999  99999999998 799999999999999999999999987652              


Q ss_pred             chhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEeC
Q 012717          160 WMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA  238 (458)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~~  238 (458)
                                           +|..    -|+ ..||++++.+..+++|++..++..++++|||+|||+||||+.++.++
T Consensus       287 ---------------------eg~~----ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIG  341 (637)
T COG1782         287 ---------------------EGGE----PPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIG  341 (637)
T ss_pred             ---------------------cCCC----CCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEec
Confidence                                 1111    256 89999999999999999999999999999999999999999998886


Q ss_pred             C--eeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHH
Q 012717          239 K--GNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLA  316 (458)
Q Consensus       239 ~--~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~  316 (458)
                      +  .+|+||||+........+..-..++.++.||+|   +||   |.+      +..+            .++++  ..+
T Consensus       342 dGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimE---sTY---Gg~------~d~q------------~~R~e--aE~  395 (637)
T COG1782         342 DGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIME---STY---GGR------DDVQ------------PPREE--AEK  395 (637)
T ss_pred             CCceeEEEecccccceeeecChhhccCcchhheeee---ecc---CCc------cccC------------ccHHH--HHH
Confidence            4  799999999865422222222346789999999   787   543      2222            22233  446


Q ss_pred             HHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhh-cC
Q 012717          317 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLF-SG  394 (458)
Q Consensus       317 ~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~-~~  394 (458)
                      +|++.|.+|+++||+||||+||+||+||++..|++++.++.++ +|||+ ++|..++++++..|+|||+...|+.++ .+
T Consensus       396 ~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYl-DGMI~EatAIhtaYPEyL~~~lr~~I~~~g  474 (637)
T COG1782         396 ELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYL-DGMIWEATAIHTAYPEYLNKELRERIFHEG  474 (637)
T ss_pred             HHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceee-eeeeeehhhhhhcCHHhhhHHHHHHHhcCC
Confidence            7999999999999999999999999999999999999999998 99996 679999999999999999999999998 48


Q ss_pred             CCCCCceeeeec----cccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCeEE-EEE
Q 012717          395 DPLFAHVKLIKE----KKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGII-TLY  452 (458)
Q Consensus       395 ~~pF~~~~~~~~----~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~~~-~~~  452 (458)
                      +|||....|.+-    .+-.+..+ ..|+||+|+||||++|++=.++-.++-|++|-|| -+|
T Consensus       475 ~NPF~se~f~~V~~~~~r~~i~~~-~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgY  536 (637)
T COG1782         475 ENPFLSEIFKRVEGSDERQEIIES-DEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGY  536 (637)
T ss_pred             CCCccccceeecCChhHHHHHhcC-CCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEe
Confidence            999976655322    12444444 4899999999999999999999999999999954 555

>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query458
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 6e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2i7t_A459 Cleavage and polyadenylation specificity factor 73 2e-07
3af5_A651 Putative uncharacterized protein PH1404; archaeal 2e-05
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Back     alignment and structure
 Score =  104 bits (259), Expect = 6e-24
 Identities = 52/426 (12%), Positives = 115/426 (26%), Gaps = 115/426 (26%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
           M +   C   G       ++      +L D   + S ++    +                
Sbjct: 1   MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEK----------- 49

Query: 61  NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP----MGMLGLPFLTRME 116
                                          +  IDV+++S P    +G   L +     
Sbjct: 50  ------------------------------VIPEIDVIILSQPTIECLGAHSLLYYNFTS 79

Query: 117 --GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALR 174
                 ++Y T     +G++   +                S+G                 
Sbjct: 80  HFISRIQVYATLPVINLGRVSTIDSY-------------ASAGVIGPYDTNKL------- 119

Query: 175 KIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIKAFSSGLDIGAC 231
                            +  ++     +  L++ +          L + A+++G+  G  
Sbjct: 120 ----------------DLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGS 163

Query: 232 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDD 291
            W IS     + Y    N             +  + ++        D+T     +     
Sbjct: 164 IWCISTYSEKLVYAKRWNHT-------RDNILNAASIL--------DATGKPLSTLMRPS 208

Query: 292 NNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAI 351
                 ++ +L  +  S    ++           + + GSV+IP++  G FL L  Q+  
Sbjct: 209 A-----IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHE 263

Query: 352 FMECSS-----LKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGD----PLFAHVK 402
            +  S+      ++P+ I+S      L Y  ++ EWL     +   + +           
Sbjct: 264 LLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRI 323

Query: 403 LIKEKK 408
            I    
Sbjct: 324 KIIAPN 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 100.0
2i7t_A459 Cleavage and polyadenylation specificity factor 73 100.0
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 100.0
3af5_A651 Putative uncharacterized protein PH1404; archaeal 100.0
2xr1_A640 Cleavage and polyadenylation specificity factor 1 100.0
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 100.0
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.97
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.96
2az4_A429 Hypothetical protein EF2904; structural genomics, 99.92
4b87_A367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.86
3zdk_A336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.85
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.71
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.69
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.68
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.67
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.62
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.57
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.54
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.52
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.49
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.39
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.29
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.27
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.26
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.24
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.24
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.23
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.22
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.21
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.19
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.18
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.16
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.15
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.09
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.09
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.07
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.07
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.05
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.04
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.01
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.01
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 98.99
4efz_A298 Metallo-beta-lactamase family protein; structural 98.99
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.99
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 98.98
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 98.98
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.97
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 98.96
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 98.96
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 98.95
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 98.95
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 98.95
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 98.94
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 98.93
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 98.93
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 98.91
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 98.9
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 98.86
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 98.85
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.84
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 98.79
1xm8_A254 Glyoxalase II; structural genomics, protein struct 98.78
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 98.76
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 98.72
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 98.7
3r2u_A466 Metallo-beta-lactamase family protein; structural 98.69
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 98.37
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.26
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.03
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 96.92
3h3e_A267 Uncharacterized protein TM1679; structural genomic 97.44
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-56  Score=466.91  Aligned_cols=334  Identities=19%  Similarity=0.226  Sum_probs=278.6

Q ss_pred             CEEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCc
Q 012717            1 MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPW   80 (458)
Q Consensus         1 mkl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~   80 (458)
                      ||+++||+++ ++++|||||+.++.+||+|||++++..                               ....+   .++
T Consensus         1 M~i~~LG~~~-~vg~s~~li~~~~~~iLID~G~~~~~~-------------------------------~~~~~---~~~   45 (431)
T 3iek_A            1 MRIVPFGAAR-EVTGSAHLLLAGGRRVLLDCGMFQGKE-------------------------------EARNH---APF   45 (431)
T ss_dssp             CEEEECSCSS-SSSCCCEEEEETTEEEEECCCCCCGGG-------------------------------GGGGG---SCC
T ss_pred             CEEEEeCCCC-CCCCcEEEEEECCeEEEEeCCCCcchh-------------------------------hccch---hhc
Confidence            9999999984 899999999999999999999965420                               00111   111


Q ss_pred             ccccccccccCCCcccEEEecCC--CCcchhhhhhcccCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCc
Q 012717           81 YKTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGP  158 (458)
Q Consensus        81 ~~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~~~~  158 (458)
                              .+++.+||+|||||+  ||+|+||+|.+ .+|++|||||++|+++.+.++.|..++++.             
T Consensus        46 --------~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~-------------  103 (431)
T 3iek_A           46 --------GFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGPVYATRATVLLMEIVLEDALKVMDE-------------  103 (431)
T ss_dssp             --------SSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSCEEECHHHHHHHHHHHHHHHHHCSS-------------
T ss_pred             --------CCCcccCCEEEECCCChHHhccHHHHHH-cCCCCeEEEcHHHHHHHHHHHHHHHhhccc-------------
Confidence                    146789999999999  99999999998 588999999999999999999887643210             


Q ss_pred             cchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCCcEEEEEecCCCCCCceEEEEEe
Q 012717          159 QWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISG  237 (458)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g~l~i~~~~aGH~lGsa~~~I~~  237 (458)
                                                    ..+ .+|++.++.++++++|++++++ ++++++++++||++||++|.|+.
T Consensus       104 ------------------------------~~y~~~~~~~~~~~~~~l~~~~~~~l-~g~~v~~~~agH~~Gs~~~~i~~  152 (431)
T 3iek_A          104 ------------------------------PFFGPEDVEEALGHLRPLEYGEWLRL-GALSLAFGQAGHLPGSAFVVAQG  152 (431)
T ss_dssp             ------------------------------CSSCHHHHHHHHHTEEECCTTCCEEE-TTEEEEEEECCSSTTCEEEEEEE
T ss_pred             ------------------------------CCCCHHHHHHHHhccEEcCCCCeEEe-CCEEEEEEeCCCCcCceEEEEEE
Confidence                                          012 7889999999999999999999 78999999999999999999999


Q ss_pred             CCeeEEEecCCCCCCCCCCcCCCCCCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccCCCcccHHHHHHHHH
Q 012717          238 AKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAF  317 (458)
Q Consensus       238 ~~~~i~ytgD~~~~~~~~~~~d~~~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~~~~~~~~~~erl~~  317 (458)
                      ++++|+|+||+....... ..++..+.++|+||+|   +||   +++        .+            .+  +.++.++
T Consensus       153 ~~~~ilfsGD~~~~~~~~-l~~~~~~~~~D~LI~E---sTy---~~~--------~h------------~~--~~~~~~~  203 (431)
T 3iek_A          153 EGRTLVYSGDLGNREKDV-LPDPSLPPLADLVLAE---GTY---GDR--------PH------------RP--YRETVRE  203 (431)
T ss_dssp             TTEEEEECCCCCCTTSSS-SCCCCBCCCCSEEEEE---CTT---TTC--------CC------------CC--HHHHHHH
T ss_pred             CCEEEEEeCCCCCCCCcc-cCCccccCCccEEEEE---ccc---CCc--------CC------------CC--hHHHHHH
Confidence            999999999997543211 1234456789999999   676   322        11            11  1224567


Q ss_pred             HHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCCCc-ccEEEEchhHHHHHHHHHhhHHhhhHHHHHhhhcCCC
Q 012717          318 ICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP  396 (458)
Q Consensus       318 l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~l~-~pIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~  396 (458)
                      |++.|.+++++||+||||+|++||+|||+++|+++|++  ++ +|||++||||.+++++|+.++|||+++.++.+..+++
T Consensus       204 l~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (431)
T 3iek_A          204 FLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKN  281 (431)
T ss_dssp             HHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999988  55 9999999999999999999999999999998888788


Q ss_pred             CC--Cceeeeeccc-cccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCe-EEEEEE
Q 012717          397 LF--AHVKLIKEKK-IHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVG-IITLYL  453 (458)
Q Consensus       397 pF--~~~~~~~~~~-l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~-~~~~~~  453 (458)
                      ||  ++++++++.+ ++.++...+||||||+||||++|.+.....-+|-|++|. |+|||-
T Consensus       282 pf~~~~~~~~~~~~~~~~~~~~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq  342 (431)
T 3iek_A          282 PFRPAGLEVVEHTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQ  342 (431)
T ss_dssp             TTCCTTEEECCSHHHHHHHHHSCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCC
T ss_pred             CCCCCCeEEeCCHHHHHHHhcCCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCC
Confidence            75  7777787765 677777779999999999999999999988999999999 667774
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 458
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 2e-20
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 7e-05
d2dkfa1431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 0.001
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.0 bits (225), Expect = 2e-20
 Identities = 47/428 (10%), Positives = 110/428 (25%), Gaps = 119/428 (27%)

Query: 1   MKFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQ 60
           M +   C   G       ++      +L D   + S ++    +                
Sbjct: 1   MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEK----------- 49

Query: 61  NRQKVEKPLDANDLIFAEPWYKTVNNLHLWNVSFIDVVLISSP----MGMLGLPFLTRME 116
                                          +  IDV+++S P    +G      L    
Sbjct: 50  ------------------------------VIPEIDVIILSQPTIECLG--AHSLLYYNF 77

Query: 117 ----GFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSA 172
                   ++Y T     +G++   +          +   +                   
Sbjct: 78  TSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLD----------------- 120

Query: 173 LRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI---LIIKAFSSGLDIG 229
                              +  ++     +  L++ +          L + A+++G+  G
Sbjct: 121 -------------------LEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPG 161

Query: 230 ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFS 289
              W IS     + Y       +          +  + ++  +                 
Sbjct: 162 GSIWCISTYSEKLVY-------AKRWNHTRDNILNAASILDATGKPLSTLMRPSA----- 209

Query: 290 DDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQI 349
                   ++ +L  +  S    ++           + + GSV+IP++  G FL L  Q+
Sbjct: 210 --------IITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQV 261

Query: 350 AIFMECSSL-----KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPL----FAH 400
              +  S+      ++P+ I+S      L Y  ++ EWL     +   + +         
Sbjct: 262 HELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGS 321

Query: 401 VKLIKEKK 408
              I    
Sbjct: 322 RIKIIAPN 329
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query458
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 100.0
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 100.0
d2i7ta1451 Cleavage and polyadenylation specificity factor su 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.72
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.54
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.45
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.41
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.33
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.2
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.06
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.05
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.02
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 98.99
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 98.99
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 98.96
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 98.91
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.74
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 98.63
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 98.6
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.49
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.39
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.37
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 98.35
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.22
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.03
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.98
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 97.98
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 97.82
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.77
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 97.59
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 97.22
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-55  Score=459.93  Aligned_cols=336  Identities=16%  Similarity=0.219  Sum_probs=255.4

Q ss_pred             EEEEecCCCCcCCCceEEEEECCEEEEEcCCCCCccccccCCCCCcccccccccCccchhhhcccCCCCccccccccCcc
Q 012717            2 KFTCLCQGGGFNFPPCHILNVSGFHVLFDCPLDLSALTVFSPLPNDFYKAICKENSDSQNRQKVEKPLDANDLIFAEPWY   81 (458)
Q Consensus         2 kl~~Lg~~~~~v~~sc~LLe~~~~~ILlDCG~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~   81 (458)
                      +++|+|.+++  ++||||||+++.+|||||||+++...                              ..+.    .+++
T Consensus         4 ~~~~~~~g~g--~~sc~ll~~~~~~iLlDcG~~~~~~~------------------------------~~~~----~~~~   47 (514)
T d2i7xa1           4 KYNCCDDGSG--TTVGSVVRFDNVTLLIDPGWNPSKVS------------------------------YEQC----IKYW   47 (514)
T ss_dssp             EEEECCSSSS--SCCCEEEEETTEEEEECCCCCTTTSC------------------------------HHHH----HHHH
T ss_pred             EEEEecCCCc--eeeEEEEEECCeEEEEECCCCcCccc------------------------------hhhh----hhhh
Confidence            4667765543  78999999999999999999865200                              0011    1111


Q ss_pred             cccccccccCCCcccEEEecCC--CCcchhhhhhcc----cCCcceEEEehHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 012717           82 KTVNNLHLWNVSFIDVVLISSP--MGMLGLPFLTRM----EGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES  155 (458)
Q Consensus        82 ~~~~~~~~~d~~~IDaVlISHa--DH~g~LP~L~~~----~gf~g~Iy~T~pT~~l~~~~L~d~~~~~~~~~~~~~~~~~  155 (458)
                      .       .++++||||||||+  ||+|+||+|+++    .+|++|||||+||++|++++|.|+++.++..    + +  
T Consensus        48 ~-------~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~----~-~--  113 (514)
T d2i7xa1          48 E-------KVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVI----G-P--  113 (514)
T ss_dssp             H-------TTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHHHHHHHHHTTSS----S-S--
T ss_pred             h-------cCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEEeCHHHHHHHHHHHHHHHHHhhhh----c-c--
Confidence            1       35789999999999  999999999874    3679999999999999999999988654310    0 0  


Q ss_pred             CCccchhhhHhhhchhhhhhhhcCCCCCCCCCCCch-HHHHHHHHhcceeeCCCCEEEeCC---cEEEEEecCCCCCCce
Q 012717          156 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPC-IAHVKDCISKVQTLRFGEEACYNG---ILIIKAFSSGLDIGAC  231 (458)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dv~~~~~~i~~v~y~e~v~i~g---~l~i~~~~aGH~lGsa  231 (458)
                          +                          ....+ .+||+.+++++++++|+|++++.+   ++++++++|||++|||
T Consensus       114 ----~--------------------------~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGsa  163 (514)
T d2i7xa1         114 ----Y--------------------------DTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGS  163 (514)
T ss_dssp             ----B--------------------------TTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCE
T ss_pred             ----c--------------------------ccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCce
Confidence                0                          01133 899999999999999999999953   6999999999999999


Q ss_pred             EEEEEeCCeeEEEecCCCCCC-CCCCcCCCC-------CCCCCcEEEEcCCCCCCccccCCCCcccCCCCchhhhhhccC
Q 012717          232 NWIISGAKGNIAYISGSNFAS-GHAMDFDYR-------AIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLS  303 (458)
Q Consensus       232 ~~~I~~~~~~i~ytgD~~~~~-~~~~~~d~~-------~l~~~D~Li~e~~~st~~~~~~~ps~~~~~~~~~~~~~~s~~  303 (458)
                      +|.|+.++++|+||||.+... ++....+..       .....|.++++   +++   +++        .+         
T Consensus       164 ~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~---~t~---~~~--------~~---------  220 (514)
T d2i7xa1         164 IWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIIT---TLD---RFG--------SS---------  220 (514)
T ss_dssp             EEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEE---CCS---CCC--------CS---------
T ss_pred             EEEEEECCeEEEEEeccCCCCCccCCCccccccccccccccCCCEEEEE---cCC---CCC--------CC---------
Confidence            999999999999999997653 332222211       11134555565   343   111        11         


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHHcCCeEEEecCchhhHHHHHHHHHHHHHhCC----C-cccEEEEchhHHHHHHHHHh
Q 012717          304 NYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS----L-KIPIYIISSVAEELLAYTNT  378 (458)
Q Consensus       304 ~~~~~~~~~erl~~l~~~I~~tl~~gG~VLIPv~a~Gr~qELl~~L~~~~~~~~----l-~~pIy~~s~~a~~~~~~~~~  378 (458)
                         ..  ..++.+.|++.|.+++++||+||||+|++||+||||++|.++|.+..    + ++|||++|++|.+++++|++
T Consensus       221 ---~~--~~~~~~~l~~~i~~~~~~gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~  295 (514)
T d2i7xa1         221 ---QP--FKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKS  295 (514)
T ss_dssp             ---SC--HHHHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHT
T ss_pred             ---CC--hHHHHHHHHHHHHHHHhCCCEEEEEEcCchHHHHHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHH
Confidence               11  12245679999999999999999999999999999999999998753    3 48999999999999999999


Q ss_pred             hHHhhhHHHHHhhh--cCCCCC--CceeeeeccccccCCCCCCCcEEEecCCCCCCCCCCCCCCeeeecCCCeEEE
Q 012717          379 IPEWLCKQRQEKLF--SGDPLF--AHVKLIKEKKIHVFPAVHSPKLLNLASCFLPTGVCGLVPPFICFDAGVGIIT  450 (458)
Q Consensus       379 ~~ewl~~~~~~~~~--~~~~pF--~~~~~~~~~~l~~~~~~~~p~vi~a~~~~l~~G~s~~~~~~~~~~~~~~~~~  450 (458)
                      +.|||+++.++.+.  .+.+||  ++++.+++.+  .+....+||||||+++|   |.++.....++.|++|.||.
T Consensus       296 ~~e~~~~~~~~~~~~~~~~~pf~~~~~~~i~~~~--~l~~~~~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~  366 (514)
T d2i7xa1         296 MLEWLSPSLLKTWENRNNTSPFEIGSRIKIIAPN--ELSKYPGSKICFVSEVG---ALINEVIIKVGNSEKTTLIL  366 (514)
T ss_dssp             CGGGSCHHHHHHHHSSSSCCTTCCTTTEEECCGG--GGGGCCSCEEEEEESCH---HHHHHHHHHHSSCTTEEEEE
T ss_pred             hHhhcCHHHHHHHhhhcCCCchhccCceeccCHH--HHHhccCCcEEEEcCCC---chHHHHHHHHhcCCCCEEEE
Confidence            99999999888764  345664  6666666653  23334589999999986   88877777889999999765
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure